AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705200 MtrunA17_Chr4g0048711 90.323 124 7 1 1 119 99 222 9.49e-78 233
Msa0705200 MtrunA17_Chr4g0048711 83.178 107 13 1 1 102 256 362 6.23e-57 180
Msa0705200 MtrunA17_Chr4g0048661 83.065 124 16 1 1 119 207 330 6.85e-72 218
Msa0705200 MtrunA17_Chr4g0048731 86.325 117 11 1 1 112 216 332 9.27e-69 210
Msa0705200 MtrunA17_Chr4g0048781 78.226 124 22 1 1 119 158 281 5.48e-68 206
Msa0705200 MtrunA17_Chr4g0048681 81.301 123 18 1 1 118 450 572 2.91e-65 207
Msa0705200 MtrunA17_Chr4g0048791 83.607 122 15 1 1 117 702 823 8.50e-65 210
Msa0705200 MtrunA17_Chr4g0048741 82.500 120 16 1 1 115 702 821 1.68e-64 209
Msa0705200 MtrunA17_Chr4g0048641 79.167 120 20 1 1 115 628 747 3.43e-61 199
Msa0705200 MtrunA17_Chr4g0048801 53.782 119 50 1 1 114 688 806 8.69e-37 132
Msa0705200 MtrunA17_Chr4g0048631 47.967 123 58 2 1 117 702 824 5.40e-33 120
Msa0705200 MtrunA17_Chr6g0453561 48.305 118 55 2 1 112 37 154 1.01e-31 110
Msa0705200 MtrunA17_Chr8g0357691 52.066 121 46 5 1 112 648 765 2.92e-31 116
Msa0705200 MtrunA17_Chr2g0280711 46.400 125 61 2 1 119 700 824 2.61e-30 113
Msa0705200 MtrunA17_Chr8g0357631 51.240 121 47 5 1 112 638 755 6.47e-30 112
Msa0705200 MtrunA17_Chr3g0081071 46.552 116 52 2 1 106 99 214 8.30e-30 107
Msa0705200 MtrunA17_Chr3g0082941 47.458 118 56 2 1 112 343 460 1.46e-29 110
Msa0705200 MtrunA17_Chr1g0206321 44.715 123 61 3 1 116 1 123 1.52e-29 104
Msa0705200 MtrunA17_Chr8g0357781 48.305 118 55 2 1 112 1 118 1.77e-29 103
Msa0705200 MtrunA17_Chr8g0357651 50.000 118 53 2 1 112 640 757 2.97e-29 110
Msa0705200 MtrunA17_Chr7g0236531 44.715 123 62 2 1 117 208 330 4.15e-29 107
Msa0705200 MtrunA17_Chr3g0078531 43.220 118 62 1 1 113 697 814 5.09e-29 109
Msa0705200 MtrunA17_Chr3g0081001 48.305 118 55 2 1 112 513 630 5.31e-29 109
Msa0705200 MtrunA17_Chr3g0078541 43.220 118 62 1 1 113 700 817 5.89e-29 109
Msa0705200 MtrunA17_Chr7g0236691 46.341 123 60 2 1 117 670 792 6.10e-29 109
Msa0705200 MtrunA17_Chr8g0357761 50.000 120 50 4 1 112 650 767 7.91e-29 109
Msa0705200 MtrunA17_Chr8g0354331 44.444 126 60 3 1 116 270 395 7.93e-29 107
Msa0705200 MtrunA17_Chr8g0361281 48.739 119 55 2 1 113 683 801 1.17e-28 108
Msa0705200 MtrunA17_Chr8g0357831 52.381 105 45 1 1 100 362 466 1.61e-28 107
Msa0705200 MtrunA17_Chr2g0280701 47.059 119 57 2 1 113 670 788 1.66e-28 108
Msa0705200 MtrunA17_Chr4g0048581 47.414 116 54 3 1 110 701 815 2.06e-28 108
Msa0705200 MtrunA17_Chr2g0280761 45.378 119 59 2 1 113 1 119 2.26e-28 100
Msa0705200 MtrunA17_Chr4g0055011 45.528 123 61 2 1 117 241 363 2.35e-28 106
Msa0705200 MtrunA17_Chr3g0078551 41.525 118 64 1 1 113 694 811 3.03e-28 107
Msa0705200 MtrunA17_Chr2g0280691 45.528 123 60 3 1 117 696 817 3.83e-28 107
Msa0705200 MtrunA17_Chr8g0357921 43.802 121 62 2 1 115 1 121 4.65e-28 100
Msa0705200 MtrunA17_Chr2g0280751 48.276 116 53 3 1 110 696 810 6.10e-28 106
Msa0705200 MtrunA17_Chr3g0092301 45.763 118 59 1 1 113 100 217 6.75e-28 102
Msa0705200 MtrunA17_Chr3g0078521 42.373 118 63 1 1 113 689 806 8.40e-28 106
Msa0705200 MtrunA17_Chr8g0357661 44.915 118 59 2 1 112 33 150 9.06e-28 100
Msa0705200 MtrunA17_Chr4g0042431 40.336 119 65 2 1 113 1 119 9.67e-28 99.4
Msa0705200 MtrunA17_Chr4g0023111 44.800 125 62 3 1 119 884 1007 1.78e-27 105
Msa0705200 MtrunA17_Chr8g0354391 44.068 118 60 2 1 112 104 221 1.83e-27 101
Msa0705200 MtrunA17_Chr8g0358101 47.458 118 56 2 1 112 634 751 1.85e-27 105
Msa0705200 MtrunA17_Chr7g0236561 43.443 122 64 1 1 117 675 796 1.99e-27 105
Msa0705200 MtrunA17_Chr8g0357711 48.760 121 50 5 1 112 647 764 2.05e-27 105
Msa0705200 MtrunA17_Chr4g0042351 43.697 119 61 2 1 113 623 741 2.50e-27 104
Msa0705200 MtrunA17_Chr8g0354281 44.915 118 59 2 1 112 505 622 2.87e-27 104
Msa0705200 MtrunA17_Chr3g0081101 44.860 107 54 1 5 106 12 118 3.30e-27 98.2
Msa0705200 MtrunA17_Chr8g0361141 47.458 118 55 3 1 112 686 802 3.50e-27 104
Msa0705200 MtrunA17_Chr8g0357881 48.305 118 55 2 1 112 646 763 6.12e-27 103
Msa0705200 MtrunA17_Chr8g0361441 41.667 120 65 1 1 115 676 795 6.44e-27 103
Msa0705200 MtrunA17_Chr8g0347571 44.628 121 61 2 1 115 740 860 6.74e-27 103
Msa0705200 MtrunA17_Chr1g0206351 44.444 126 62 4 1 119 523 647 6.99e-27 103
Msa0705200 MtrunA17_Chr7g0236651 45.833 120 59 2 1 114 655 774 7.14e-27 103
Msa0705200 MtrunA17_Chr8g0354271 48.739 119 54 3 1 112 505 623 7.25e-27 103
Msa0705200 MtrunA17_Chr8g0340051 46.341 123 60 2 1 117 199 321 7.42e-27 101
Msa0705200 MtrunA17_Chr1g0154331 46.610 118 56 3 1 112 209 325 7.98e-27 101
Msa0705200 MtrunA17_Chr4g0042361 41.880 117 63 1 1 112 709 825 8.15e-27 103
Msa0705200 MtrunA17_Chr4g0042401 43.697 119 61 2 1 113 673 791 9.31e-27 103
Msa0705200 MtrunA17_Chr4g0042441 43.333 120 61 2 1 113 670 789 9.40e-27 103
Msa0705200 MtrunA17_Chr8g0358061 46.610 118 57 2 1 112 226 343 1.34e-26 101
Msa0705200 MtrunA17_Chr8g0360201 47.458 118 55 3 1 112 576 692 1.49e-26 102
Msa0705200 MtrunA17_Chr8g0358081 46.610 118 57 2 1 112 631 748 1.52e-26 102
Msa0705200 MtrunA17_Chr3g0093161 44.915 118 60 1 1 113 667 784 1.77e-26 102
Msa0705200 MtrunA17_Chr7g0236551 43.902 123 63 2 1 117 658 780 2.14e-26 102
Msa0705200 MtrunA17_Chr8g0354421 46.610 118 57 2 1 112 533 650 2.81e-26 102
Msa0705200 MtrunA17_Chr2g0323231 42.017 119 63 2 1 113 348 466 2.83e-26 101
Msa0705200 MtrunA17_Chr7g0236471 43.089 123 64 2 1 117 510 632 2.86e-26 102
Msa0705200 MtrunA17_Chr1g0206551 45.455 121 58 4 1 114 205 324 3.23e-26 100
Msa0705200 MtrunA17_Chr8g0358071 46.610 118 57 2 1 112 646 763 3.25e-26 101
Msa0705200 MtrunA17_Chr8g0361161 45.763 118 57 3 1 112 214 330 3.40e-26 100
Msa0705200 MtrunA17_Chr3g0084631 41.026 117 64 1 1 112 33 149 3.56e-26 95.9
Msa0705200 MtrunA17_Chr8g0357961 47.458 118 56 2 1 112 654 771 3.69e-26 101
Msa0705200 MtrunA17_Chr8g0358121 44.715 123 62 2 1 117 632 754 4.01e-26 101
Msa0705200 MtrunA17_Chr3g0081011 46.610 118 57 2 1 112 509 626 4.26e-26 101
Msa0705200 MtrunA17_Chr8g0358141 45.763 118 58 2 1 112 248 365 5.42e-26 100
Msa0705200 MtrunA17_Chr8g0357991 46.610 118 57 2 1 112 655 772 6.29e-26 100
Msa0705200 MtrunA17_Chr1g0206331 44.628 121 61 2 1 115 505 625 7.57e-26 100
Msa0705200 MtrunA17_Chr2g0280831 43.200 125 64 3 1 119 265 388 7.73e-26 99.8
Msa0705200 MtrunA17_Chr1g0206261 46.825 126 59 4 1 119 258 382 8.96e-26 99.4
Msa0705200 MtrunA17_Chr8g0354351 46.610 118 57 2 1 112 503 620 9.08e-26 100
Msa0705200 MtrunA17_Chr8g0340111 44.715 123 62 2 1 117 675 797 1.13e-25 100
Msa0705200 MtrunA17_Chr4g0023221 42.857 119 60 3 1 113 900 1016 1.24e-25 100
Msa0705200 MtrunA17_Chr3g0119041 44.068 118 60 2 1 112 510 627 1.25e-25 100
Msa0705200 MtrunA17_Chr8g0354431 45.763 118 58 2 1 112 512 629 1.78e-25 99.8
Msa0705200 MtrunA17_Chr8g0358031 47.458 118 56 2 1 112 649 766 1.81e-25 99.8
Msa0705200 MtrunA17_Chr8g0340071 44.715 123 62 2 1 117 673 795 1.83e-25 99.8
Msa0705200 MtrunA17_Chr8g0357981 45.763 118 58 2 1 112 475 592 1.84e-25 99.4
Msa0705200 MtrunA17_Chr5g0394011 45.455 121 56 4 1 112 521 640 1.91e-25 99.4
Msa0705200 MtrunA17_Chr5g0393981 42.400 125 66 2 1 119 566 690 1.97e-25 99.4
Msa0705200 MtrunA17_Chr8g0354441 44.915 118 59 2 1 112 520 637 2.09e-25 99.4
Msa0705200 MtrunA17_Chr3g0084661 44.167 120 56 3 1 112 203 319 2.51e-25 97.4
Msa0705200 MtrunA17_Chr5g0428581 42.149 121 63 3 1 115 214 333 2.63e-25 97.8
Msa0705200 MtrunA17_Chr8g0340081 44.715 123 62 2 1 117 677 799 2.68e-25 99.0
Msa0705200 MtrunA17_Chr1g0206361 43.966 116 59 2 1 110 513 628 3.02e-25 99.0
Msa0705200 MtrunA17_Chr2g0280731 44.828 116 57 3 1 110 720 834 3.36e-25 99.0
Msa0705200 MtrunA17_Chr5g0428111 44.915 118 60 1 1 113 673 790 3.54e-25 99.0
Msa0705200 MtrunA17_Chr2g0280791 43.200 125 64 3 1 119 691 814 3.58e-25 98.6
Msa0705200 MtrunA17_Chr2g0280801 43.200 125 64 3 1 119 697 820 3.66e-25 98.6
Msa0705200 MtrunA17_Chr7g0236641 43.089 123 64 2 1 117 695 817 4.07e-25 98.6
Msa0705200 MtrunA17_Chr3g0081031 43.220 118 61 2 1 112 522 639 4.29e-25 98.6
Msa0705200 MtrunA17_Chr3g0098781 41.732 127 63 3 1 119 81 204 4.40e-25 94.7
Msa0705200 MtrunA17_Chr4g0042341 39.831 118 66 1 1 113 693 810 5.28e-25 98.2
Msa0705200 MtrunA17_Chr2g0280781 44.000 125 64 2 1 119 680 804 5.33e-25 98.2
Msa0705200 MtrunA17_Chr7g0236341 43.902 123 62 3 1 117 688 809 6.11e-25 98.2
Msa0705200 MtrunA17_Chr4g0042381 42.373 118 62 2 1 112 623 740 6.82e-25 97.8
Msa0705200 MtrunA17_Chr1g0206561 44.628 121 59 4 1 114 499 618 7.65e-25 97.8
Msa0705200 MtrunA17_Chr8g0361341 41.026 117 64 1 1 112 8 124 7.80e-25 92.0
Msa0705200 MtrunA17_Chr5g0426941 45.000 120 58 4 1 113 509 627 1.28e-24 97.1
Msa0705200 MtrunA17_Chr8g0361261 43.590 117 61 1 1 112 707 823 1.63e-24 97.1
Msa0705200 MtrunA17_Chr7g0236121 45.528 123 60 3 1 117 674 795 1.84e-24 96.7
Msa0705200 MtrunA17_Chr1g0154371 44.068 118 59 3 1 112 526 642 1.84e-24 96.7
Msa0705200 MtrunA17_Chr7g0236201 45.528 123 60 3 1 117 640 761 1.93e-24 96.7
Msa0705200 MtrunA17_Chr1g0154321 45.045 111 55 2 1 106 538 647 2.36e-24 96.3
Msa0705200 MtrunA17_Chr2g0280681 43.220 118 60 3 1 111 671 788 2.78e-24 96.3
Msa0705200 MtrunA17_Chr8g0340091 43.697 119 61 2 1 113 702 820 2.98e-24 96.3
Msa0705200 MtrunA17_Chr2g0318841 44.167 120 57 4 1 112 671 788 3.50e-24 95.9
Msa0705200 MtrunA17_Chr2g0318811 44.167 120 57 4 1 112 670 787 3.57e-24 95.9
Msa0705200 MtrunA17_Chr4g0042391 42.735 117 61 2 1 111 623 739 3.69e-24 95.9
Msa0705200 MtrunA17_Chr8g0361301 43.590 117 61 1 1 112 676 792 3.90e-24 95.9
Msa0705200 MtrunA17_Chr1g0154311 45.763 118 57 3 1 112 521 637 5.16e-24 95.5
Msa0705200 MtrunA17_Chr1g0206391 42.857 119 62 2 1 113 210 328 5.27e-24 94.4
Msa0705200 MtrunA17_Chr7g0236231 42.742 124 63 4 1 117 688 810 6.04e-24 95.1
Msa0705200 MtrunA17_Chr3g0084431 41.026 117 64 1 1 112 664 780 6.26e-24 95.1
Msa0705200 MtrunA17_Chr3g0084451 43.750 128 61 4 1 119 676 801 7.32e-24 95.1
Msa0705200 MtrunA17_Chr8g0357871 50.980 102 38 5 1 95 1 97 8.27e-24 88.6
Msa0705200 MtrunA17_Chr1g0205771 43.590 117 60 2 1 111 513 629 8.80e-24 94.7
Msa0705200 MtrunA17_Chr3g0084691 42.373 118 62 2 1 112 692 809 1.88e-23 94.0
Msa0705200 MtrunA17_Chr5g0394021 45.763 118 56 3 1 112 491 606 2.22e-23 93.6
Msa0705200 MtrunA17_Chr1g0154351 44.068 118 59 3 1 112 528 644 2.51e-23 93.6
Msa0705200 MtrunA17_Chr5g0428101 42.373 118 63 1 1 113 671 788 2.56e-23 93.6
Msa0705200 MtrunA17_Chr8g0361431 39.669 121 68 1 1 116 654 774 2.74e-23 93.6
Msa0705200 MtrunA17_Chr4g0065561 41.379 116 62 2 3 112 618 733 2.75e-23 93.2
Msa0705200 MtrunA17_Chr5g0422921 43.220 118 62 1 1 113 668 785 3.14e-23 93.2
Msa0705200 MtrunA17_Chr2g0318831 43.333 120 60 3 1 113 672 790 7.09e-23 92.0
Msa0705200 MtrunA17_Chr4g0065521 41.379 116 62 2 3 112 209 324 7.39e-23 90.9
Msa0705200 MtrunA17_Chr3g0084441 41.525 118 63 2 1 112 676 793 1.18e-22 91.7
Msa0705200 MtrunA17_Chr6g0475111 42.149 121 64 2 1 115 757 877 1.24e-22 91.7
Msa0705200 MtrunA17_Chr3g0084681 40.678 118 64 2 1 112 634 751 1.54e-22 91.3
Msa0705200 MtrunA17_Chr4g0020081 44.444 117 57 4 1 110 681 796 2.23e-22 90.9
Msa0705200 MtrunA17_Chr4g0065541 38.710 124 68 4 3 119 610 732 2.69e-22 90.5
Msa0705200 MtrunA17_Chr6g0475131 41.667 120 63 3 1 113 179 298 3.00e-22 89.0
Msa0705200 MtrunA17_Chr1g0206401 42.017 119 63 2 1 113 520 638 3.67e-22 90.1
Msa0705200 MtrunA17_Chr3g0084421 40.171 117 65 1 1 112 632 748 7.05e-22 89.4
Msa0705200 MtrunA17_Chr8g0361251 40.171 117 65 1 1 112 676 792 7.36e-22 89.4
Msa0705200 MtrunA17_Chr3g0084491 40.678 118 64 2 1 112 676 793 1.21e-21 88.6
Msa0705200 MtrunA17_Chr3g0084411 40.171 117 65 1 1 112 669 785 1.28e-21 88.6
Msa0705200 MtrunA17_Chr6g0474901 41.803 122 64 3 1 115 736 857 1.33e-21 88.6
Msa0705200 MtrunA17_Chr6g0474811 42.623 122 63 3 1 115 743 864 1.68e-21 88.2
Msa0705200 MtrunA17_Chr6g0475091 41.270 126 67 3 1 119 751 876 1.80e-21 88.2
Msa0705200 MtrunA17_Chr5g0394001 40.952 105 57 1 1 100 500 604 2.27e-21 87.8
Msa0705200 MtrunA17_Chr6g0474991 40.984 122 65 3 1 115 33 154 3.64e-21 83.6
Msa0705200 MtrunA17_Chr7g0236571 40.000 115 63 2 6 114 510 624 4.22e-21 87.0
Msa0705200 MtrunA17_Chr6g0475201 40.833 120 64 3 1 113 744 863 5.53e-21 86.7
Msa0705200 MtrunA17_Chr6g0474861 40.984 122 65 3 1 115 456 577 5.93e-21 86.7
Msa0705200 MtrunA17_Chr6g0474871 40.984 122 65 3 1 115 735 856 8.15e-21 86.3
Msa0705200 MtrunA17_Chr7g0236511 40.385 104 61 1 12 114 666 769 3.67e-20 84.3
Msa0705200 MtrunA17_Chr1g0206461 41.880 117 61 3 1 111 503 618 1.31e-19 82.8
Msa0705200 MtrunA17_Chr6g0475181 37.815 119 53 3 1 113 1 104 1.79e-19 77.8
Msa0705200 MtrunA17_Chr6g0474851 40.984 122 65 3 1 115 98 219 1.93e-19 80.5
Msa0705200 MtrunA17_Chr1g0206231 39.316 117 61 2 1 107 516 632 4.13e-19 81.3
Msa0705200 MtrunA17_Chr1g0206521 41.880 117 61 3 1 111 505 620 4.73e-19 81.3
Msa0705200 MtrunA17_Chr1g0206521 41.880 117 61 3 1 111 1147 1262 6.98e-19 80.9
Msa0705200 MtrunA17_Chr8g0376131 36.522 115 68 1 1 110 221 335 2.75e-18 79.0
Msa0705200 MtrunA17_Chr8g0354291 49.296 71 35 1 43 112 2 72 3.09e-18 73.9
Msa0705200 MtrunA17_Chr1g0206431 42.000 100 52 2 1 95 55 153 3.20e-18 76.3
Msa0705200 MtrunA17_Chr1g0206451 43.434 99 50 2 1 94 542 639 8.73e-18 77.8
Msa0705200 MtrunA17_Chr7g0226891 37.815 119 66 3 1 113 218 334 1.99e-17 76.3
Msa0705200 MtrunA17_Chr6g0484231 33.333 117 71 3 1 111 218 333 2.63e-17 75.9
Msa0705200 MtrunA17_Chr7g0236161 38.136 118 57 2 1 117 640 742 4.04e-17 75.9
Msa0705200 MtrunA17_Chr1g0206531 41.000 100 53 2 1 95 507 605 5.89e-17 75.5
Msa0705200 MtrunA17_Chr3g0109411 35.000 120 70 3 2 113 494 613 4.51e-16 72.8
Msa0705200 MtrunA17_Chr2g0312561 33.019 106 66 1 1 101 212 317 1.60e-15 70.9
Msa0705200 MtrunA17_Chr1g0206221 35.398 113 67 2 7 113 1 113 1.60e-15 67.8
Msa0705200 MtrunA17_Chr2g0312571 33.019 106 66 1 1 101 217 322 4.63e-14 67.0
Msa0705200 MtrunA17_Chr2g0281241 41.000 100 42 3 1 95 224 311 4.87e-14 66.6
Msa0705200 MtrunA17_Chr1g0206421 36.752 117 65 3 1 111 398 511 6.37e-14 66.6
Msa0705200 MtrunA17_Chr2g0281971 34.711 121 72 3 1 115 218 337 7.76e-14 66.2
Msa0705200 MtrunA17_Chr3g0109431 33.333 120 72 3 2 113 497 616 2.53e-13 65.1
Msa0705200 MtrunA17_Chr2g0314861 32.258 124 78 2 1 118 89 212 3.99e-13 63.5
Msa0705200 MtrunA17_Chr1g0181341 37.736 106 60 2 1 101 217 321 4.08e-13 64.3
Msa0705200 MtrunA17_Chr8g0359691 33.929 112 69 1 1 107 833 944 6.22e-13 63.9
Msa0705200 MtrunA17_Chr2g0315151 33.036 112 70 1 1 107 835 946 7.48e-13 63.5
Msa0705200 MtrunA17_Chr2g0299041 35.294 119 70 3 2 113 283 401 8.02e-13 63.5
Msa0705200 MtrunA17_Chr7g0239371 33.028 109 68 1 1 104 507 615 8.30e-13 63.5
Msa0705200 MtrunA17_Chr2g0314881 35.922 103 61 1 1 98 398 500 1.74e-12 62.4
Msa0705200 MtrunA17_Chr6g0474961 40.789 76 44 1 41 115 131 206 3.59e-12 60.8
Msa0705200 MtrunA17_Chr3g0102451 31.624 117 72 4 1 110 495 610 4.25e-12 61.2
Msa0705200 MtrunA17_Chr5g0433941 30.894 123 73 3 1 111 536 658 4.50e-12 61.2
Msa0705200 MtrunA17_Chr5g0428511 41.333 75 41 2 44 116 2 75 6.11e-12 57.8
Msa0705200 MtrunA17_Chr2g0314821 33.645 107 66 1 1 102 833 939 6.15e-12 60.8
Msa0705200 MtrunA17_Chr2g0314841 33.645 107 66 1 1 102 830 936 6.58e-12 60.8
Msa0705200 MtrunA17_Chr5g0428551 34.667 75 48 1 43 116 43 117 7.03e-12 58.9
Msa0705200 MtrunA17_Chr2g0314991 34.862 109 62 3 1 102 1346 1452 1.64e-11 59.7
Msa0705200 MtrunA17_Chr5g0446651 29.032 124 80 3 1 117 528 650 4.84e-11 58.5
Msa0705200 MtrunA17_Chr8g0358911 29.060 117 73 2 1 107 215 331 5.44e-11 58.2
Msa0705200 MtrunA17_Chr8g0358781 34.906 106 63 2 1 101 511 615 5.99e-11 58.2
Msa0705200 MtrunA17_Chr7g0275131 31.858 113 71 2 2 108 245 357 7.84e-11 57.8
Msa0705200 MtrunA17_Chr2g0278851 36.449 107 62 2 1 101 441 547 8.55e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705200 AT1G65800.1 50.000 122 51 3 1 112 692 813 2.85e-29 110
Msa0705200 AT1G11340.1 50.420 119 50 4 1 112 684 800 1.36e-28 108
Msa0705200 AT1G65790.1 49.180 122 52 3 1 112 688 809 1.71e-28 108
Msa0705200 AT4G03230.8 45.000 120 59 2 1 113 701 820 2.73e-28 108
Msa0705200 AT4G03230.4 45.000 120 59 2 1 113 859 978 3.20e-28 107
Msa0705200 AT4G03230.1 45.000 120 59 2 1 113 859 978 3.20e-28 107
Msa0705200 AT4G03230.2 44.628 121 60 2 1 114 759 879 3.21e-28 107
Msa0705200 AT4G03230.6 44.628 121 60 2 1 114 759 879 3.21e-28 107
Msa0705200 AT4G03230.5 44.628 121 60 2 1 114 787 907 3.25e-28 107
Msa0705200 AT4G03230.3 44.628 121 60 2 1 114 694 814 3.62e-28 107
Msa0705200 AT4G03230.7 44.628 121 60 2 1 114 702 822 3.62e-28 107
Msa0705200 AT1G11410.3 46.032 126 59 4 1 119 668 791 1.05e-27 106
Msa0705200 AT1G11410.4 46.032 126 59 4 1 119 699 822 1.08e-27 106
Msa0705200 AT1G11410.1 46.032 126 59 4 1 119 692 815 1.09e-27 106
Msa0705200 AT1G11410.2 46.032 126 59 4 1 119 577 700 1.18e-27 106
Msa0705200 AT4G23130.1 43.548 124 63 3 1 117 509 632 1.74e-27 105
Msa0705200 AT4G23130.2 43.548 124 63 3 1 117 513 636 1.74e-27 105
Msa0705200 AT4G23140.1 42.857 119 62 2 1 113 520 638 1.03e-26 103
Msa0705200 AT4G23140.2 42.857 119 62 2 1 113 526 644 1.06e-26 103
Msa0705200 AT3G45860.1 43.307 127 64 3 1 119 520 646 1.12e-26 103
Msa0705200 AT4G23320.2 47.107 121 57 3 1 114 352 472 1.96e-26 102
Msa0705200 AT4G23320.1 47.107 121 57 3 1 114 352 472 1.96e-26 102
Msa0705200 AT1G61500.3 44.167 120 62 1 1 115 665 784 2.17e-26 102
Msa0705200 AT1G61500.2 44.167 120 62 1 1 115 642 761 2.25e-26 102
Msa0705200 AT4G23150.1 44.538 119 60 2 1 113 505 623 2.29e-26 102
Msa0705200 AT1G61500.1 44.167 120 62 1 1 115 660 779 2.41e-26 102
Msa0705200 AT1G61440.2 44.444 117 60 1 1 112 677 793 2.46e-26 102
Msa0705200 AT4G23320.3 47.107 121 57 3 1 114 373 493 2.48e-26 102
Msa0705200 AT1G61440.3 44.444 117 60 1 1 112 652 768 2.50e-26 102
Msa0705200 AT1G61440.1 44.444 117 60 1 1 112 647 763 2.65e-26 102
Msa0705200 AT4G38830.1 45.600 125 60 3 1 117 514 638 2.93e-26 102
Msa0705200 AT1G61430.9 42.742 124 66 1 1 119 658 781 2.95e-26 102
Msa0705200 AT1G61430.1 42.742 124 66 1 1 119 661 784 3.07e-26 102
Msa0705200 AT1G61430.11 42.742 124 66 1 1 119 635 758 3.15e-26 102
Msa0705200 AT1G61430.12 42.742 124 66 1 1 119 635 758 3.15e-26 102
Msa0705200 AT1G61430.13 42.742 124 66 1 1 119 635 758 3.15e-26 102
Msa0705200 AT4G23160.1 42.857 119 62 2 1 113 528 646 4.35e-26 101
Msa0705200 AT4G23180.1 42.500 120 63 2 1 114 517 636 6.09e-26 101
Msa0705200 AT4G11470.2 43.651 126 64 3 1 119 513 638 6.21e-26 101
Msa0705200 AT4G11470.1 43.651 126 64 3 1 119 508 633 6.70e-26 101
Msa0705200 AT4G05200.2 41.600 125 67 2 1 119 534 658 7.38e-26 101
Msa0705200 AT4G05200.1 41.600 125 67 2 1 119 516 640 7.85e-26 100
Msa0705200 AT1G11280.2 43.697 119 60 2 1 112 674 792 9.58e-26 100
Msa0705200 AT1G11280.3 43.697 119 60 2 1 112 662 780 9.95e-26 100
Msa0705200 AT1G11280.4 43.697 119 60 2 1 112 672 790 1.01e-25 100
Msa0705200 AT1G11280.1 43.697 119 60 2 1 112 684 802 1.01e-25 100
Msa0705200 AT4G11480.3 43.651 126 64 3 1 119 493 618 1.60e-25 100
Msa0705200 AT4G11480.1 43.651 126 64 3 1 119 498 623 1.65e-25 100
Msa0705200 AT4G11460.1 43.902 123 62 3 1 116 518 640 1.72e-25 100
Msa0705200 AT4G11480.4 43.651 126 64 3 1 119 490 615 1.74e-25 100
Msa0705200 AT4G11460.3 43.902 123 62 3 1 116 515 637 1.88e-25 100
Msa0705200 AT4G11460.2 43.902 123 62 3 1 116 440 562 1.95e-25 99.8
Msa0705200 AT4G21390.1 44.068 118 59 3 1 112 698 814 4.54e-25 99.0
Msa0705200 AT4G23240.2 45.455 121 59 3 1 114 197 317 6.85e-25 96.7
Msa0705200 AT4G00970.1 45.238 126 62 3 1 119 515 640 8.39e-25 98.2
Msa0705200 AT1G67520.8 47.154 123 52 5 1 112 457 577 8.66e-25 98.2
Msa0705200 AT1G67520.7 47.154 123 52 5 1 112 457 577 8.66e-25 98.2
Msa0705200 AT4G21380.1 45.455 121 57 3 1 112 695 815 8.87e-25 98.2
Msa0705200 AT1G67520.3 47.154 123 52 5 1 112 665 785 1.04e-24 97.8
Msa0705200 AT1G67520.5 47.154 123 52 5 1 112 428 548 1.09e-24 97.8
Msa0705200 AT1G67520.6 47.154 123 52 5 1 112 672 792 1.11e-24 97.8
Msa0705200 AT1G67520.4 47.154 123 52 5 1 112 622 742 1.21e-24 97.8
Msa0705200 AT3G16030.1 47.107 121 55 4 1 112 696 816 1.54e-24 97.4
Msa0705200 AT4G23290.1 46.774 124 57 4 1 116 489 611 1.60e-24 97.4
Msa0705200 AT3G16030.6 47.107 121 55 4 1 112 717 837 1.64e-24 97.4
Msa0705200 AT4G23290.2 46.774 124 57 4 1 116 532 654 1.75e-24 97.1
Msa0705200 AT3G16030.2 47.107 121 55 4 1 112 573 693 2.04e-24 97.1
Msa0705200 AT1G61420.1 40.678 118 65 1 1 113 663 780 3.47e-24 96.3
Msa0705200 AT1G61420.2 40.678 118 65 1 1 113 665 782 3.57e-24 96.3
Msa0705200 AT1G61420.4 40.678 118 65 1 1 113 665 782 3.57e-24 96.3
Msa0705200 AT1G61420.5 40.000 120 67 1 1 115 515 634 3.77e-24 96.3
Msa0705200 AT1G61420.3 40.000 120 67 1 1 115 513 632 3.92e-24 96.3
Msa0705200 AT1G61490.4 41.525 118 64 1 1 113 659 776 4.13e-24 96.3
Msa0705200 AT1G61490.1 41.525 118 64 1 1 113 659 776 4.13e-24 96.3
Msa0705200 AT1G61490.2 41.525 118 64 1 1 113 659 776 4.13e-24 96.3
Msa0705200 AT1G61490.5 41.525 118 64 1 1 113 659 776 4.13e-24 96.3
Msa0705200 AT4G23240.1 45.455 121 59 3 1 114 504 624 4.16e-24 96.3
Msa0705200 AT1G61490.6 41.525 118 64 1 1 113 633 750 4.20e-24 96.3
Msa0705200 AT1G61490.7 41.525 118 64 1 1 113 633 750 4.20e-24 96.3
Msa0705200 AT1G61490.3 41.525 118 64 1 1 113 509 626 4.32e-24 95.9
Msa0705200 AT1G61400.1 41.525 118 64 1 1 113 669 786 5.87e-24 95.9
Msa0705200 AT1G61400.2 41.525 118 64 1 1 113 677 794 6.22e-24 95.5
Msa0705200 AT4G00960.2 46.218 119 57 3 1 112 133 251 8.20e-24 92.8
Msa0705200 AT4G00960.3 46.218 119 57 3 1 112 140 258 9.95e-24 92.8
Msa0705200 AT4G11530.1 43.697 119 60 3 1 112 521 639 1.01e-23 95.1
Msa0705200 AT1G61380.1 43.590 117 61 1 1 112 657 773 1.26e-23 94.7
Msa0705200 AT4G23310.2 41.322 121 64 3 1 114 637 757 1.32e-23 94.7
Msa0705200 AT1G61480.1 38.983 118 67 1 1 113 665 782 1.35e-23 94.7
Msa0705200 AT1G61380.2 43.590 117 61 1 1 112 510 626 1.39e-23 94.7
Msa0705200 AT4G21366.1 47.414 116 44 3 1 105 1 110 1.39e-23 87.8
Msa0705200 AT4G11900.1 42.735 117 62 1 1 112 706 822 1.47e-23 94.7
Msa0705200 AT4G23310.1 41.322 121 64 3 1 114 677 797 1.49e-23 94.7
Msa0705200 AT4G11900.9 42.735 117 62 1 1 112 637 753 1.62e-23 94.4
Msa0705200 AT4G27300.1 43.548 124 62 3 1 117 669 791 1.77e-23 94.4
Msa0705200 AT4G00960.1 46.218 119 57 3 1 112 227 345 2.34e-23 92.8
Msa0705200 AT1G61610.1 38.983 118 65 3 1 112 694 810 2.47e-23 94.0
Msa0705200 AT1G11330.1 40.336 119 65 2 1 113 691 809 2.65e-23 94.0
Msa0705200 AT1G11330.2 40.336 119 65 2 1 113 693 811 2.70e-23 94.0
Msa0705200 AT1G61370.1 41.026 117 64 1 1 112 670 786 3.18e-23 93.6
Msa0705200 AT1G61370.2 41.026 117 64 1 1 112 519 635 3.46e-23 93.6
Msa0705200 AT4G23270.3 40.000 125 68 3 1 118 495 619 5.77e-23 92.8
Msa0705200 AT4G23270.2 40.000 125 68 3 1 118 495 619 5.88e-23 92.8
Msa0705200 AT4G23270.1 40.000 125 68 3 1 118 495 619 5.88e-23 92.8
Msa0705200 AT4G21410.1 43.443 122 60 4 1 114 403 523 9.00e-23 92.0
Msa0705200 AT4G27290.2 45.082 122 60 3 1 116 680 800 9.25e-23 92.4
Msa0705200 AT4G27290.1 45.082 122 60 3 1 116 634 754 1.14e-22 92.0
Msa0705200 AT4G21410.3 43.802 121 59 4 1 113 528 647 1.18e-22 92.0
Msa0705200 AT1G61390.2 43.220 118 58 3 1 112 521 635 1.22e-22 92.0
Msa0705200 AT1G61390.1 43.220 118 58 3 1 112 689 803 1.24e-22 92.0
Msa0705200 AT4G11490.1 41.176 119 63 3 1 112 490 608 1.96e-22 91.3
Msa0705200 AT1G11350.1 37.815 119 68 2 1 113 681 799 2.28e-22 91.3
Msa0705200 AT4G23190.1 40.984 122 63 3 1 113 519 640 3.60e-22 90.5
Msa0705200 AT4G23190.3 40.984 122 63 3 1 113 441 562 3.72e-22 90.5
Msa0705200 AT4G23190.4 40.984 122 63 3 1 113 441 562 3.72e-22 90.5
Msa0705200 AT4G23300.1 40.164 122 64 3 1 113 522 643 4.00e-22 90.5
Msa0705200 AT4G23230.1 40.678 118 64 2 1 112 506 623 5.41e-22 90.1
Msa0705200 AT4G23280.3 37.600 125 71 3 1 118 463 587 6.36e-22 89.7
Msa0705200 AT4G23200.1 40.000 125 68 3 1 118 505 629 6.81e-22 89.7
Msa0705200 AT4G23280.1 37.600 125 71 3 1 118 513 637 7.02e-22 89.7
Msa0705200 AT4G23280.2 37.600 125 71 3 1 118 511 635 7.30e-22 89.7
Msa0705200 AT1G61550.1 39.316 117 66 1 1 112 658 774 1.28e-21 89.0
Msa0705200 AT4G21230.1 40.496 121 63 3 1 113 502 621 1.60e-21 88.6
Msa0705200 AT4G23260.1 40.650 123 66 3 1 116 508 630 2.36e-21 88.2
Msa0705200 AT1G11303.1 42.500 120 54 5 1 113 678 789 2.41e-21 88.2
Msa0705200 AT4G23260.2 40.650 123 66 3 1 116 497 619 2.45e-21 88.2
Msa0705200 AT4G23220.1 38.843 121 67 3 1 114 505 625 7.72e-21 86.7
Msa0705200 AT4G21400.8 42.500 120 60 4 1 112 421 539 8.22e-21 86.7
Msa0705200 AT4G21400.2 42.500 120 60 4 1 112 520 638 9.03e-21 86.7
Msa0705200 AT4G21400.1 42.500 120 60 4 1 112 532 650 9.05e-21 86.7
Msa0705200 AT4G21400.7 42.500 120 60 4 1 112 522 640 1.02e-20 86.3
Msa0705200 AT1G11300.2 40.650 123 60 3 1 117 663 778 1.13e-20 86.3
Msa0705200 AT1G11300.1 40.650 123 60 3 1 117 678 793 1.15e-20 86.3
Msa0705200 AT1G61360.1 41.322 121 64 2 1 114 667 787 6.80e-20 84.0
Msa0705200 AT1G61360.2 41.322 121 64 2 1 114 586 706 6.87e-20 84.0
Msa0705200 AT1G61360.3 41.322 121 64 2 1 114 586 706 6.87e-20 84.0
Msa0705200 AT1G61360.4 41.322 121 64 2 1 114 586 706 6.87e-20 84.0
Msa0705200 AT4G23210.3 41.026 117 58 3 1 110 527 639 2.45e-19 82.4
Msa0705200 AT4G23250.1 37.398 123 70 3 1 116 528 650 7.50e-19 81.3
Msa0705200 AT4G23250.3 37.398 123 70 3 1 116 523 645 8.07e-19 80.9
Msa0705200 AT4G23250.2 37.097 124 71 3 1 117 523 646 8.78e-19 80.9
Msa0705200 AT4G04490.1 40.708 113 57 3 1 108 509 616 5.41e-18 78.6
Msa0705200 AT1G61460.1 39.362 94 57 0 20 113 629 722 7.70e-18 78.2
Msa0705200 AT4G04570.1 39.831 118 60 4 1 112 517 629 1.62e-17 77.4
Msa0705200 AT4G04540.1 39.831 118 60 4 1 112 522 634 4.12e-17 76.3
Msa0705200 AT4G04540.4 39.831 118 60 4 1 112 493 605 4.30e-17 76.3
Msa0705200 AT1G70740.1 35.577 104 62 1 1 99 230 333 1.85e-15 71.2
Msa0705200 AT4G28670.1 35.294 119 71 2 1 113 503 621 4.90e-15 70.1
Msa0705200 AT1G70530.1 33.898 118 71 2 1 113 491 606 5.11e-15 70.1
Msa0705200 AT3G14840.2 38.835 103 58 1 1 98 841 943 8.96e-14 66.6
Msa0705200 AT4G04500.1 37.931 116 63 3 1 107 514 629 1.35e-13 66.2
Msa0705200 AT4G04510.1 36.036 111 62 3 1 106 508 614 3.10e-13 65.1
Msa0705200 AT4G04510.2 36.036 111 62 3 1 106 510 616 3.14e-13 65.1
Msa0705200 AT1G16670.1 31.193 109 70 1 1 104 212 320 3.36e-13 64.7
Msa0705200 AT1G56145.3 32.773 119 73 3 1 113 751 868 3.77e-13 64.7
Msa0705200 AT1G56145.1 32.773 119 73 3 1 113 854 971 4.11e-13 64.7
Msa0705200 AT1G56145.2 32.773 119 73 3 1 113 881 998 5.25e-13 64.3
Msa0705200 AT1G70740.2 32.759 116 61 2 1 99 218 333 7.45e-13 63.9
Msa0705200 AT3G53380.1 29.688 128 77 3 1 115 543 670 2.36e-12 62.4
Msa0705200 AT1G56120.3 31.933 119 74 3 1 113 711 828 2.50e-12 62.4
Msa0705200 AT1G56120.1 31.933 119 74 3 1 113 877 994 3.04e-12 62.4
Msa0705200 AT1G56120.2 31.933 119 74 3 1 113 859 976 3.41e-12 62.0
Msa0705200 AT1G29720.1 33.962 106 65 1 1 101 840 945 3.44e-12 62.0
Msa0705200 AT5G40380.1 38.889 126 60 7 1 113 483 604 9.55e-12 60.8
Msa0705200 AT1G53430.2 33.036 112 70 1 1 107 797 908 1.42e-11 60.5
Msa0705200 AT1G53430.1 33.036 112 70 1 1 107 838 949 1.42e-11 60.5
Msa0705200 AT1G53440.1 33.036 112 70 1 1 107 836 947 1.48e-11 60.5

Find 38 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCCAAAATCTGAGATTT+TGG 0.086616 4_4:+77746354 None:intergenic
AATCCCAAAATCTCAGATTT+TGG 0.095099 4_4:-77746358 Msa0705200:five_prime_UTR
CATACATGTCCAATTAAATT+TGG 0.110039 4_4:+77746071 None:intergenic
TTTGGGATGGCAAGAATATT+TGG 0.209085 4_4:-77746340 Msa0705200:five_prime_UTR
AGAGACTCCCCAAATTTAAT+TGG 0.241778 4_4:-77746080 Msa0705200:CDS
CGTCCTTCCATTGCATATTC+TGG 0.245891 4_4:+77746176 None:intergenic
ATACATGTCCAATTAAATTT+GGG 0.289380 4_4:+77746072 None:intergenic
GTTCTGAGATGCATTCAAAT+TGG 0.299739 4_4:-77745873 Msa0705200:CDS
ATTTATAGGTGTGGACTATA+TGG 0.371461 4_4:-77745959 Msa0705200:intron
AGCATCAAGGAGAACATTGC+TGG 0.376298 4_4:+77746387 None:intergenic
TATATCTTCATCAAGATTCA+AGG 0.386838 4_4:-77746438 Msa0705200:five_prime_UTR
AAAACCACTTCTAACATTGA+TGG 0.407371 4_4:+77745816 None:intergenic
CAAAAGGTCATCACTGGATT+GGG 0.418371 4_4:-77746503 Msa0705200:five_prime_UTR
ACAAAAGGTCATCACTGGAT+TGG 0.425011 4_4:-77746504 Msa0705200:five_prime_UTR
TTACCACTGGAGATTATTGA+TGG 0.428533 4_4:-77746131 Msa0705200:CDS
TGGGATTCATTTCAGCATCA+AGG 0.471101 4_4:+77746374 None:intergenic
ATGGACAGAAGAAAGGGCCT+TGG 0.483933 4_4:-77745940 Msa0705200:CDS
TGGGCAAAGAGGCGTGTCAT+TGG 0.487195 4_4:+77745785 None:intergenic
AGAAACACACATTGTGAGAC+AGG 0.490796 4_4:-77746104 Msa0705200:CDS
GGACTATATGGACAGAAGAA+AGG 0.497215 4_4:-77745947 Msa0705200:CDS
GACTATATGGACAGAAGAAA+GGG 0.498234 4_4:-77745946 Msa0705200:CDS
ATGCATCTCAGAACTATAGC+AGG 0.508510 4_4:+77745882 None:intergenic
TCAAAACAAAAGGTCATCAC+TGG 0.509351 4_4:-77746509 Msa0705200:five_prime_UTR
TCAACTAAGATCAAAACAAA+AGG 0.524958 4_4:-77746519 Msa0705200:five_prime_UTR
ATCCGTTGTGGGATTGATTG+AGG 0.544672 4_4:-77746466 Msa0705200:five_prime_UTR
TAGACCATCAATGTTAGAAG+TGG 0.547573 4_4:-77745820 Msa0705200:CDS
AAAATCTGATGTCTTACCAC+TGG 0.555595 4_4:-77746144 Msa0705200:CDS
TGCTTCATCAACTATATCCA+AGG 0.578658 4_4:+77745923 None:intergenic
AAGCAAGAACAAAGAGTGGT+CGG 0.592250 4_4:-77746303 Msa0705200:five_prime_UTR
TACATGTCCAATTAAATTTG+GGG 0.597127 4_4:+77746073 None:intergenic
TGCATCTCAGAACTATAGCA+GGG 0.601676 4_4:+77745883 None:intergenic
TCACCAGAATATGCAATGGA+AGG 0.620061 4_4:-77746179 Msa0705200:CDS
TATGTCACCAGAATATGCAA+TGG 0.632728 4_4:-77746183 Msa0705200:CDS
ATTTAAGCAAGAACAAAGAG+TGG 0.645143 4_4:-77746307 Msa0705200:five_prime_UTR
TTGCCATCAATAATCTCCAG+TGG 0.651511 4_4:+77746128 None:intergenic
GCATCTCAGAACTATAGCAG+GGG 0.679974 4_4:+77745884 None:intergenic
CACCTCAATCAATCCCACAA+CGG 0.684398 4_4:+77746464 None:intergenic
CATCTCAGAACTATAGCAGG+GGG 0.685391 4_4:+77745885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATGTCCAATTAAATTT+GGG + chr4_4:77746238-77746257 None:intergenic 20.0%
!! GTTATATATCATTAGATTGT+AGG + chr4_4:77746296-77746315 None:intergenic 20.0%
!! ATACATGTCCAATTAAATTT+GGG + chr4_4:77746238-77746257 None:intergenic 20.0%
!! GTTATATATCATTAGATTGT+AGG + chr4_4:77746296-77746315 None:intergenic 20.0%
! TCAACTAAGATCAAAACAAA+AGG - chr4_4:77745788-77745807 Msa0705200:CDS 25.0%
! TATATCTTCATCAAGATTCA+AGG - chr4_4:77745869-77745888 Msa0705200:CDS 25.0%
! TAATCACGAAATTATACAGA+TGG - chr4_4:77746057-77746076 Msa0705200:intron 25.0%
! TACATGTCCAATTAAATTTG+GGG + chr4_4:77746237-77746256 None:intergenic 25.0%
! CATACATGTCCAATTAAATT+TGG + chr4_4:77746239-77746258 None:intergenic 25.0%
! AAACTCTGTTGTGAATTTAT+AGG - chr4_4:77746334-77746353 Msa0705200:five_prime_UTR 25.0%
!!! AATAAAAATGCTGGTTTTTG+AGG + chr4_4:77746548-77746567 None:intergenic 25.0%
! TCAACTAAGATCAAAACAAA+AGG - chr4_4:77745788-77745807 Msa0705200:CDS 25.0%
! TATATCTTCATCAAGATTCA+AGG - chr4_4:77745869-77745888 Msa0705200:CDS 25.0%
! TAATCACGAAATTATACAGA+TGG - chr4_4:77746057-77746076 Msa0705200:intron 25.0%
! TACATGTCCAATTAAATTTG+GGG + chr4_4:77746237-77746256 None:intergenic 25.0%
! CATACATGTCCAATTAAATT+TGG + chr4_4:77746239-77746258 None:intergenic 25.0%
! AAACTCTGTTGTGAATTTAT+AGG - chr4_4:77746334-77746353 Msa0705200:five_prime_UTR 25.0%
!!! AATAAAAATGCTGGTTTTTG+AGG + chr4_4:77746548-77746567 None:intergenic 25.0%
! AATCCCAAAATCTCAGATTT+TGG - chr4_4:77745949-77745968 Msa0705200:CDS 30.0%
! ATCCCAAAATCTCAGATTTT+GGG - chr4_4:77745950-77745969 Msa0705200:CDS 30.0%
!! ATCCCAAAATCTGAGATTTT+GGG + chr4_4:77745955-77745974 None:intergenic 30.0%
ATTTAAGCAAGAACAAAGAG+TGG - chr4_4:77746000-77746019 Msa0705200:intron 30.0%
! ACCATTTTGTATAATTGCAG+TGG - chr4_4:77746098-77746117 Msa0705200:CDS 30.0%
TCCACTGCAATTATACAAAA+TGG + chr4_4:77746102-77746121 None:intergenic 30.0%
! AAAAAGAGTAGCCTTAAAAC+AGG - chr4_4:77746270-77746289 Msa0705200:intron 30.0%
! ATTTATAGGTGTGGACTATA+TGG - chr4_4:77746348-77746367 Msa0705200:five_prime_UTR 30.0%
AAAACCACTTCTAACATTGA+TGG + chr4_4:77746494-77746513 None:intergenic 30.0%
TTGTCGTTGAATAAAAATGC+TGG + chr4_4:77746557-77746576 None:intergenic 30.0%
! AATCCCAAAATCTCAGATTT+TGG - chr4_4:77745949-77745968 Msa0705200:CDS 30.0%
! ATCCCAAAATCTCAGATTTT+GGG - chr4_4:77745950-77745969 Msa0705200:CDS 30.0%
!! ATCCCAAAATCTGAGATTTT+GGG + chr4_4:77745955-77745974 None:intergenic 30.0%
ATTTAAGCAAGAACAAAGAG+TGG - chr4_4:77746000-77746019 Msa0705200:intron 30.0%
! ACCATTTTGTATAATTGCAG+TGG - chr4_4:77746098-77746117 Msa0705200:CDS 30.0%
TCCACTGCAATTATACAAAA+TGG + chr4_4:77746102-77746121 None:intergenic 30.0%
! AAAAAGAGTAGCCTTAAAAC+AGG - chr4_4:77746270-77746289 Msa0705200:intron 30.0%
! ATTTATAGGTGTGGACTATA+TGG - chr4_4:77746348-77746367 Msa0705200:five_prime_UTR 30.0%
AAAACCACTTCTAACATTGA+TGG + chr4_4:77746494-77746513 None:intergenic 30.0%
TTGTCGTTGAATAAAAATGC+TGG + chr4_4:77746557-77746576 None:intergenic 30.0%
TCAAAACAAAAGGTCATCAC+TGG - chr4_4:77745798-77745817 Msa0705200:CDS 35.0%
!! CATCCCAAAATCTGAGATTT+TGG + chr4_4:77745956-77745975 None:intergenic 35.0%
!! CAAAATCTCAGATTTTGGGA+TGG - chr4_4:77745954-77745973 Msa0705200:CDS 35.0%
! TTTGGGATGGCAAGAATATT+TGG - chr4_4:77745967-77745986 Msa0705200:intron 35.0%
TATGTCACCAGAATATGCAA+TGG - chr4_4:77746124-77746143 Msa0705200:CDS 35.0%
AAAATCTGATGTCTTACCAC+TGG - chr4_4:77746163-77746182 Msa0705200:CDS 35.0%
TTACCACTGGAGATTATTGA+TGG - chr4_4:77746176-77746195 Msa0705200:CDS 35.0%
AGAGACTCCCCAAATTTAAT+TGG - chr4_4:77746227-77746246 Msa0705200:intron 35.0%
! TAGATTGTAGGCCTGTTTTA+AGG + chr4_4:77746284-77746303 None:intergenic 35.0%
CTGTTGTGAATTTATAGGTG+TGG - chr4_4:77746339-77746358 Msa0705200:five_prime_UTR 35.0%
GACTATATGGACAGAAGAAA+GGG - chr4_4:77746361-77746380 Msa0705200:five_prime_UTR 35.0%
TGCTTCATCAACTATATCCA+AGG + chr4_4:77746387-77746406 None:intergenic 35.0%
!! GTTCTGAGATGCATTCAAAT+TGG - chr4_4:77746434-77746453 Msa0705200:five_prime_UTR 35.0%
TAGACCATCAATGTTAGAAG+TGG - chr4_4:77746487-77746506 Msa0705200:five_prime_UTR 35.0%
!!! AAAATGCTGGTTTTTGAGGT+GGG + chr4_4:77746544-77746563 None:intergenic 35.0%
!!! AAAAATGCTGGTTTTTGAGG+TGG + chr4_4:77746545-77746564 None:intergenic 35.0%
TCAAAACAAAAGGTCATCAC+TGG - chr4_4:77745798-77745817 Msa0705200:CDS 35.0%
!! CATCCCAAAATCTGAGATTT+TGG + chr4_4:77745956-77745975 None:intergenic 35.0%
!! CAAAATCTCAGATTTTGGGA+TGG - chr4_4:77745954-77745973 Msa0705200:CDS 35.0%
! TTTGGGATGGCAAGAATATT+TGG - chr4_4:77745967-77745986 Msa0705200:intron 35.0%
TATGTCACCAGAATATGCAA+TGG - chr4_4:77746124-77746143 Msa0705200:CDS 35.0%
AAAATCTGATGTCTTACCAC+TGG - chr4_4:77746163-77746182 Msa0705200:CDS 35.0%
TTACCACTGGAGATTATTGA+TGG - chr4_4:77746176-77746195 Msa0705200:CDS 35.0%
AGAGACTCCCCAAATTTAAT+TGG - chr4_4:77746227-77746246 Msa0705200:intron 35.0%
! TAGATTGTAGGCCTGTTTTA+AGG + chr4_4:77746284-77746303 None:intergenic 35.0%
CTGTTGTGAATTTATAGGTG+TGG - chr4_4:77746339-77746358 Msa0705200:five_prime_UTR 35.0%
GACTATATGGACAGAAGAAA+GGG - chr4_4:77746361-77746380 Msa0705200:five_prime_UTR 35.0%
TGCTTCATCAACTATATCCA+AGG + chr4_4:77746387-77746406 None:intergenic 35.0%
!! GTTCTGAGATGCATTCAAAT+TGG - chr4_4:77746434-77746453 Msa0705200:five_prime_UTR 35.0%
TAGACCATCAATGTTAGAAG+TGG - chr4_4:77746487-77746506 Msa0705200:five_prime_UTR 35.0%
!!! AAAATGCTGGTTTTTGAGGT+GGG + chr4_4:77746544-77746563 None:intergenic 35.0%
!!! AAAAATGCTGGTTTTTGAGG+TGG + chr4_4:77746545-77746564 None:intergenic 35.0%
ACAAAAGGTCATCACTGGAT+TGG - chr4_4:77745803-77745822 Msa0705200:CDS 40.0%
CAAAAGGTCATCACTGGATT+GGG - chr4_4:77745804-77745823 Msa0705200:CDS 40.0%
!!! AAGCGTTTTGAAATCCGTTG+TGG - chr4_4:77745829-77745848 Msa0705200:CDS 40.0%
!!! AGCGTTTTGAAATCCGTTGT+GGG - chr4_4:77745830-77745849 Msa0705200:CDS 40.0%
TGGGATTCATTTCAGCATCA+AGG + chr4_4:77745936-77745955 None:intergenic 40.0%
AAGCAAGAACAAAGAGTGGT+CGG - chr4_4:77746004-77746023 Msa0705200:intron 40.0%
TCACCAGAATATGCAATGGA+AGG - chr4_4:77746128-77746147 Msa0705200:CDS 40.0%
TTGCCATCAATAATCTCCAG+TGG + chr4_4:77746182-77746201 None:intergenic 40.0%
AGAAACACACATTGTGAGAC+AGG - chr4_4:77746203-77746222 Msa0705200:intron 40.0%
GGACTATATGGACAGAAGAA+AGG - chr4_4:77746360-77746379 Msa0705200:five_prime_UTR 40.0%
TGCATCTCAGAACTATAGCA+GGG + chr4_4:77746427-77746446 None:intergenic 40.0%
ATGCATCTCAGAACTATAGC+AGG + chr4_4:77746428-77746447 None:intergenic 40.0%
ACAAAAGGTCATCACTGGAT+TGG - chr4_4:77745803-77745822 Msa0705200:CDS 40.0%
CAAAAGGTCATCACTGGATT+GGG - chr4_4:77745804-77745823 Msa0705200:CDS 40.0%
!!! AAGCGTTTTGAAATCCGTTG+TGG - chr4_4:77745829-77745848 Msa0705200:CDS 40.0%
!!! AGCGTTTTGAAATCCGTTGT+GGG - chr4_4:77745830-77745849 Msa0705200:CDS 40.0%
TGGGATTCATTTCAGCATCA+AGG + chr4_4:77745936-77745955 None:intergenic 40.0%
AAGCAAGAACAAAGAGTGGT+CGG - chr4_4:77746004-77746023 Msa0705200:intron 40.0%
TCACCAGAATATGCAATGGA+AGG - chr4_4:77746128-77746147 Msa0705200:CDS 40.0%
TTGCCATCAATAATCTCCAG+TGG + chr4_4:77746182-77746201 None:intergenic 40.0%
AGAAACACACATTGTGAGAC+AGG - chr4_4:77746203-77746222 Msa0705200:intron 40.0%
GGACTATATGGACAGAAGAA+AGG - chr4_4:77746360-77746379 Msa0705200:five_prime_UTR 40.0%
TGCATCTCAGAACTATAGCA+GGG + chr4_4:77746427-77746446 None:intergenic 40.0%
ATGCATCTCAGAACTATAGC+AGG + chr4_4:77746428-77746447 None:intergenic 40.0%
ATCCGTTGTGGGATTGATTG+AGG - chr4_4:77745841-77745860 Msa0705200:CDS 45.0%
CACCTCAATCAATCCCACAA+CGG + chr4_4:77745846-77745865 None:intergenic 45.0%
AGCATCAAGGAGAACATTGC+TGG + chr4_4:77745923-77745942 None:intergenic 45.0%
CGTCCTTCCATTGCATATTC+TGG + chr4_4:77746134-77746153 None:intergenic 45.0%
CATCTCAGAACTATAGCAGG+GGG + chr4_4:77746425-77746444 None:intergenic 45.0%
GCATCTCAGAACTATAGCAG+GGG + chr4_4:77746426-77746445 None:intergenic 45.0%
ATCCGTTGTGGGATTGATTG+AGG - chr4_4:77745841-77745860 Msa0705200:CDS 45.0%
CACCTCAATCAATCCCACAA+CGG + chr4_4:77745846-77745865 None:intergenic 45.0%
AGCATCAAGGAGAACATTGC+TGG + chr4_4:77745923-77745942 None:intergenic 45.0%
CGTCCTTCCATTGCATATTC+TGG + chr4_4:77746134-77746153 None:intergenic 45.0%
CATCTCAGAACTATAGCAGG+GGG + chr4_4:77746425-77746444 None:intergenic 45.0%
GCATCTCAGAACTATAGCAG+GGG + chr4_4:77746426-77746445 None:intergenic 45.0%
ATGGACAGAAGAAAGGGCCT+TGG - chr4_4:77746367-77746386 Msa0705200:five_prime_UTR 50.0%
CTATAGCAGGGGGATAAGAC+TGG + chr4_4:77746415-77746434 None:intergenic 50.0%
!!! GGTTTTTGAGGTGGGCAAAG+AGG + chr4_4:77746536-77746555 None:intergenic 50.0%
ATGGACAGAAGAAAGGGCCT+TGG - chr4_4:77746367-77746386 Msa0705200:five_prime_UTR 50.0%
CTATAGCAGGGGGATAAGAC+TGG + chr4_4:77746415-77746434 None:intergenic 50.0%
!!! GGTTTTTGAGGTGGGCAAAG+AGG + chr4_4:77746536-77746555 None:intergenic 50.0%
! TGGGCAAAGAGGCGTGTCAT+TGG + chr4_4:77746525-77746544 None:intergenic 55.0%
! TGGGCAAAGAGGCGTGTCAT+TGG + chr4_4:77746525-77746544 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77745746 77746583 77745746 ID=Msa0705200;Name=Msa0705200
chr4_4 mRNA 77745746 77746583 77745746 ID=Msa0705200-mRNA-1;Parent=Msa0705200;Name=Msa0705200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=306|1|0.66|1|0.5|0.66|3|0|119
chr4_4 exon 77745746 77745973 77745746 ID=Msa0705200-mRNA-1:exon:24743;Parent=Msa0705200-mRNA-1
chr4_4 exon 77746076 77746211 77746076 ID=Msa0705200-mRNA-1:exon:24742;Parent=Msa0705200-mRNA-1
chr4_4 exon 77746285 77746583 77746285 ID=Msa0705200-mRNA-1:exon:24741;Parent=Msa0705200-mRNA-1
chr4_4 five_prime_UTR 77746285 77746583 77746285 ID=Msa0705200-mRNA-1:five_prime_utr;Parent=Msa0705200-mRNA-1
chr4_4 five_prime_UTR 77746205 77746211 77746205 ID=Msa0705200-mRNA-1:five_prime_utr;Parent=Msa0705200-mRNA-1
chr4_4 CDS 77746076 77746204 77746076 ID=Msa0705200-mRNA-1:cds;Parent=Msa0705200-mRNA-1
chr4_4 CDS 77745746 77745973 77745746 ID=Msa0705200-mRNA-1:cds;Parent=Msa0705200-mRNA-1
Gene Sequence

>Msa0705200

ATGTCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTACCACTGGAGATTATTGATGGCAAGAGAAACACACATTGTGAGACAGGAAGAGACTCCCCAAATTTAATTGGACATGTGTGGACTATATGGACAGAAGAAAGGGCCTTGGATATAGTTGATGAAGCACTAAACCAGTCTTATCCCCCTGCTATAGTTCTGAGATGCATTCAAATTGGACTCTTGTGTGTGCAAGAAAATGCGATGAATAGACCATCAATGTTAGAAGTGGTTTTTATGCTAGCCAATGACACGCCTCTTTGCCCACCTCAAAAACCAGCATTTTTATTCAACGACAACAAAAAT
Protein sequence

>Msa0705200

MSPEYAMEGRYSTKSDVLPLEIIDGKRNTHCETGRDSPNLIGHVWTIWTEERALDIVDEALNQSYPPAIVLRCIQIGLLCVQENAMNRPSMLEVVFMLANDTPLCPPQKPAFLFNDNKN