AlfalfaGEDB | Msa0706160

M. sativa cultivar zhongmu-4 / Msa0706160

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706160	XP_003630424.1	88.924	316	31	2	1	316	1	312	6.98e-169	481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706160	sp\|P81393\|MYB08_ANTMA	65.363	179	56	1	1	173	1	179	2.53e-81	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706160	G7LGH2	88.924	316	31	2	1	316	1	312	3.33e-169	481

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TFs/TRs:

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Gene ID	Type	Classification
Msa0706160	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0660100	Msa0706160	0.911681	4.615846e-83	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706160	MtrunA17_Chr8g0385321	88.924	316	31	2	1	316	1	312	6.42e-173	481
Msa0706160	MtrunA17_Chr3g0131121	49.026	308	98	7	1	282	1	275	3.13e-89	268
Msa0706160	MtrunA17_Chr4g0037141	48.758	322	114	10	1	312	1	281	1.02e-86	261
Msa0706160	MtrunA17_Chr5g0435101	61.644	146	51	1	3	148	2	142	6.01e-66	206
Msa0706160	MtrunA17_Chr7g0270891	57.862	159	67	0	1	159	1	159	8.28e-65	208
Msa0706160	MtrunA17_Chr4g0058631	42.629	251	118	3	1	225	1	251	2.22e-64	207
Msa0706160	MtrunA17_Chr1g0193371	68.217	129	41	0	1	129	1	129	5.78e-64	206
Msa0706160	MtrunA17_Chr1g0193801	52.247	178	78	1	1	178	1	171	1.17e-63	206
Msa0706160	MtrunA17_Chr4g0048511	66.667	129	42	1	1	128	1	129	1.93e-63	204
Msa0706160	MtrunA17_Chr2g0281071	67.442	129	41	1	1	128	1	129	3.67e-63	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706160	AT4G38620.1	76.510	149	34	1	1	149	1	148	6.37e-82	249
Msa0706160	AT2G16720.1	82.171	129	23	0	1	129	1	129	7.89e-81	246
Msa0706160	AT4G09460.1	63.483	178	50	2	1	176	1	165	1.65e-78	239
Msa0706160	AT4G34990.1	67.296	159	44	1	1	159	1	151	2.65e-78	240
Msa0706160	AT1G22640.1	80.315	127	25	0	1	127	1	127	1.68e-77	238
Msa0706160	AT1G35515.1	78.571	126	27	0	1	126	1	126	4.99e-74	227
Msa0706160	AT4G12350.1	49.495	198	90	2	1	198	1	188	1.66e-66	210
Msa0706160	AT5G26660.1	60.248	161	61	1	1	161	1	158	4.88e-66	211
Msa0706160	AT5G16770.4	61.644	146	56	0	1	146	1	146	8.83e-66	210
Msa0706160	AT5G16770.3	61.644	146	56	0	1	146	1	146	8.83e-66	210

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Find 85 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTCCCGACGCCGG+TGG	0.648900	4_4:-79113404	None:intergenic
AAACAAAGGTGCTTGGTCCA+AGG	0.588189	4_4:+79112228	Msa0706160:CDS
AAACGCAAACTCTATAGCCG+TGG	0.599125	4_4:+79112842	Msa0706160:CDS
AAACTTGACAATCCCGGCCC+CGG	0.577725	4_4:-79113437	None:intergenic
AAATTTATAGCCCAAAATAT+TGG	0.315592	4_4:-79113739	None:intergenic
AACAACAAGGTGAAGGTTGC+TGG	0.363863	4_4:+79112281	Msa0706160:CDS
AACACACAAACAAAGGTGCT+TGG	0.551791	4_4:+79112221	Msa0706160:CDS
AACACAGGCTTGGCAAGATG+TGG	0.575098	4_4:+79112433	Msa0706160:intron
AAGCGGCAGCGGCGCCGGAG+AGG	0.551698	4_4:-79112898	None:intergenic
AAGGCGTTCATCTTCTTCCT+TGG	0.409969	4_4:-79112245	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAACAACACACAAACAA+AGG	+	chr4_4:79112214-79112233	Msa0706160:CDS	30.0%
ACAATGAGATCAAGAACTAT+TGG	+	chr4_4:79112807-79112826	Msa0706160:CDS	30.0%
CAGTTATTCAGTAATTTCAG+TGG	+	chr4_4:79113082-79113101	Msa0706160:CDS	30.0%
AATCAACTTGGAACTTTCAT+TGG	+	chr4_4:79113216-79113235	Msa0706160:CDS	30.0%
CTTTGTCGTCAAATATCTTT+AGG	+	chr4_4:79113283-79113302	Msa0706160:CDS	30.0%
GAAAAACAACACACAAACAA+AGG	+	chr4_4:79112214-79112233	Msa0706160:CDS	30.0%
ACAATGAGATCAAGAACTAT+TGG	+	chr4_4:79112807-79112826	Msa0706160:CDS	30.0%
CAGTTATTCAGTAATTTCAG+TGG	+	chr4_4:79113082-79113101	Msa0706160:CDS	30.0%
AATCAACTTGGAACTTTCAT+TGG	+	chr4_4:79113216-79113235	Msa0706160:CDS	30.0%
CTTTGTCGTCAAATATCTTT+AGG	+	chr4_4:79113283-79113302	Msa0706160:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79112167	79113786	79112167	ID=Msa0706160;Name=Msa0706160
chr4_4	mRNA	79112167	79113786	79112167	ID=Msa0706160-mRNA-1;Parent=Msa0706160;Name=Msa0706160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=26\|1\|1\|1\|1\|1\|3\|324\|318
chr4_4	exon	79112167	79112325	79112167	ID=Msa0706160-mRNA-1:exon:25387;Parent=Msa0706160-mRNA-1
chr4_4	exon	79112440	79112569	79112440	ID=Msa0706160-mRNA-1:exon:25388;Parent=Msa0706160-mRNA-1
chr4_4	exon	79112769	79113786	79112769	ID=Msa0706160-mRNA-1:exon:25389;Parent=Msa0706160-mRNA-1
chr4_4	five_prime_UTR	79112167	79112192	79112167	ID=Msa0706160-mRNA-1:five_prime_utr;Parent=Msa0706160-mRNA-1
chr4_4	CDS	79112193	79112325	79112193	ID=Msa0706160-mRNA-1:cds;Parent=Msa0706160-mRNA-1
chr4_4	CDS	79112440	79112569	79112440	ID=Msa0706160-mRNA-1:cds;Parent=Msa0706160-mRNA-1
chr4_4	CDS	79112769	79113462	79112769	ID=Msa0706160-mRNA-1:cds;Parent=Msa0706160-mRNA-1
chr4_4	three_prime_UTR	79113463	79113786	79113463	ID=Msa0706160-mRNA-1:three_prime_utr;Parent=Msa0706160-mRNA-1

Gene Sequence

>Msa0706160

ATGGGTAGATCTCCTTGCTGTGAAAAACAACACACAAACAAAGGTGCTTGGTCCAAGGAAGAAGATGAACGCCTTATTAACTACATCAAACAACAAGGTGAAGGTTGCTGGCGTTCTCTTCCTAAAGCCGCAGGCTTGGCAAGATGTGGAAAAAGCTGTAGATTGAGATGGATCAATTATCTCAGACCTGATCTTAAACGTGGAAACTTCACTCACGAGGAAGATGAACTTATCATTAGCCTCCACGCTATGGTTGGAAACAAATGGTCTCAGATTGCTCAAAAATTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACTCACATAAAACGCAAACTCTATAGCCGTGGAATTGATCCTACAACACATCAGCCACTCAAAACCCTCTCCGGCGCCGCTGCCGCTTCAGCCGGTACTTCCTCAGCAGCAACCACCTCTGCAGAAGCTGCTTCTCCTTCAATGGTTGTTAATAATAATTCATCCGTATTACCTGTAGTACCCTCAACCAACGAGAGCAGTACTAGTAGCAGCATGAGCCACCACCACAACAAGATTAAGAGTGAGTTTCAGTTATTCAGTAATTTCAGTGGCTCTCGGCTTAAAAAGTTTGTTGCAACTGATTCTGTCCATGGTGGTGTCGAAGAATCAGTTTCAAACAGTAGCAGTGGTGTTACCGTTGAGGATATAGCTTATCCTCCTCCAATCAACTTGGAACTTTCATTGGCTATATCCTCTCCCTCTCAACAGCCACAGCAAAAAGCTTTGTGTCTTTGTCGTCAAATATCTTTAGGGTTACATGGTAGTAGCCAACAACCTTGTTGCTGCAATAATACCATGCCTATCGTTGGTGTTTCAACTTCTTATGCTGTTACTGCTCCACCACCTGCTACCACCGGCGTCGGGAATGGTTTTTTCAAATTTTCCGGGGCCGGGATTGTCAAGTTTTGA

Protein sequence

>Msa0706160

MGRSPCCEKQHTNKGAWSKEEDERLINYIKQQGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTHEEDELIISLHAMVGNKWSQIAQKLPGRTDNEIKNYWNTHIKRKLYSRGIDPTTHQPLKTLSGAAAASAGTSSAATTSAEAASPSMVVNNNSSVLPVVPSTNESSTSSSMSHHHNKIKSEFQLFSNFSGSRLKKFVATDSVHGGVEESVSNSSSGVTVEDIAYPPPINLELSLAISSPSQQPQQKALCLCRQISLGLHGSSQQPCCCNNTMPIVGVSTSYAVTAPPPATTGVGNGFFKFSGAGIVKF*