AlfalfaGEDB | Msa0706810

M. sativa cultivar zhongmu-4 / Msa0706810

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706810	XP_003630611.1	97.719	1096	25	0	1	1096	1	1096	0.0	2216

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706810	sp\|Q6Z2W3\|ARFE_ORYSJ	63.370	546	170	9	22	544	35	573	0.0	674

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706810	G7LIV9	97.719	1096	25	0	1	1096	1	1096	0.0	2216

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0706810	TF	B3-ARF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0706810	Msa0706840	0.951770	1.010555e-109	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706810	MtrunA17_Chr8g0389081	97.721	1097	24	1	1	1096	1	1097	0.0	2213
Msa0706810	MtrunA17_Chr4g0070181	69.474	475	134	7	20	490	15	482	0.0	639
Msa0706810	MtrunA17_Chr2g0285461	59.645	451	168	7	14	457	6	449	2.64e-170	524
Msa0706810	MtrunA17_Chr2g0285461	64.000	100	30	1	984	1083	775	868	3.10e-34	142
Msa0706810	MtrunA17_Chr8g0376771	55.490	510	205	9	14	520	6	496	4.72e-170	524
Msa0706810	MtrunA17_Chr8g0376771	66.667	93	31	0	984	1076	781	873	1.63e-34	143
Msa0706810	MtrunA17_Chr3g0109391	53.676	544	193	11	28	558	23	520	1.29e-168	518
Msa0706810	MtrunA17_Chr3g0109391	64.773	88	31	0	985	1072	724	811	4.68e-31	132
Msa0706810	MtrunA17_Chr5g0433301	57.627	472	181	10	19	480	15	477	3.38e-164	506
Msa0706810	MtrunA17_Chr5g0433301	63.218	87	32	0	986	1072	717	803	1.69e-30	130

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706810	AT5G20730.2	68.722	454	129	7	20	466	16	463	0.0	612
Msa0706810	AT5G20730.2	60.215	186	63	4	912	1096	974	1149	2.98e-55	210
Msa0706810	AT5G20730.3	68.571	455	129	8	20	466	16	464	0.0	607
Msa0706810	AT5G20730.3	60.221	181	61	4	912	1091	975	1145	5.37e-54	206
Msa0706810	AT5G20730.1	68.571	455	129	8	20	466	16	464	0.0	607
Msa0706810	AT5G20730.1	60.215	186	63	4	912	1096	975	1150	3.59e-55	210
Msa0706810	AT1G30330.1	57.684	475	175	9	28	489	20	481	5.22e-166	514
Msa0706810	AT1G30330.1	67.391	92	30	0	985	1076	795	886	8.71e-34	141
Msa0706810	AT1G30330.3	57.684	475	175	9	28	489	22	483	5.45e-166	514
Msa0706810	AT1G30330.3	67.391	92	30	0	985	1076	797	888	8.67e-34	141

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Find 334 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGCATACAAGTGGG+GGG	0.666743	4_4:-79959055	None:intergenic
AAACGCCACTTGCTTACAAC+CGG	0.479247	4_4:+79959373	Msa0706810:CDS
AAATCTTCTCTGCAGCACGG+CGG	0.672265	4_4:-79959031	None:intergenic
AAATTTGCCAGTGTAGAAGC+AGG	0.528558	4_4:-79963299	None:intergenic
AACCAAAGGCACAACAAGAC+TGG	0.412678	4_4:+79962333	Msa0706810:CDS
AACTGTTGATTAATATGATC+TGG	0.547585	4_4:-79961365	None:intergenic
AAGAATACAATGCCTTGGCT+TGG	0.490942	4_4:+79960828	Msa0706810:CDS
AAGACGGCGGCGAGCTTGGC+CGG	0.410830	4_4:-79957921	None:intergenic
AAGAGGTGAGTTTACTTGTT+CGG	0.424251	4_4:-79958394	None:intergenic
AAGGATCCCCAGGCTTTCCC+TGG	0.522760	4_4:+79960867	Msa0706810:CDS

Showing 1 to 10 of 334 entries

Previous1 2 3 4 5…34Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATTAGATGGAAGAAAAGA+CGG	-	chr4_4:79957940-79957959	None:intergenic	30.0%
TGAAGAAGAAACCAAAGTTA+TGG	-	chr4_4:79958140-79958159	None:intergenic	30.0%
AAAAATCCAGCATACATGTA+AGG	-	chr4_4:79958644-79958663	None:intergenic	30.0%
AACATATGAAATGGTGCTTA+CGG	-	chr4_4:79958804-79958823	None:intergenic	30.0%
TCAAACTACACATGTAAAGT+CGG	-	chr4_4:79958894-79958913	None:intergenic	30.0%
TTTACATGTGTAGTTTGACA+TGG	+	chr4_4:79958896-79958915	Msa0706810:intron	30.0%
AAAAATTAGCATACAAGTGG+GGG	-	chr4_4:79959059-79959078	None:intergenic	30.0%
TAGAACTTCAGAGTTTAATC+AGG	+	chr4_4:79959107-79959126	Msa0706810:intron	30.0%
TAAACATACCACGGTATATA+TGG	-	chr4_4:79959221-79959240	None:intergenic	30.0%
AGATGTATGTAAACATACCA+CGG	-	chr4_4:79959230-79959249	None:intergenic	30.0%

Showing 1 to 10 of 459 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79957820	79963655	79957820	ID=Msa0706810;Name=Msa0706810
chr4_4	mRNA	79957820	79963655	79957820	ID=Msa0706810-mRNA-1;Parent=Msa0706810;Name=Msa0706810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=187\|1\|1\|1\|1\|1\|14\|488\|1096
chr4_4	exon	79957820	79958064	79957820	ID=Msa0706810-mRNA-1:exon:25780;Parent=Msa0706810-mRNA-1
chr4_4	exon	79958280	79958401	79958280	ID=Msa0706810-mRNA-1:exon:25781;Parent=Msa0706810-mRNA-1
chr4_4	exon	79958550	79958648	79958550	ID=Msa0706810-mRNA-1:exon:25782;Parent=Msa0706810-mRNA-1
chr4_4	exon	79958746	79958802	79958746	ID=Msa0706810-mRNA-1:exon:25783;Parent=Msa0706810-mRNA-1
chr4_4	exon	79958909	79959064	79958909	ID=Msa0706810-mRNA-1:exon:25784;Parent=Msa0706810-mRNA-1
chr4_4	exon	79959147	79959231	79959147	ID=Msa0706810-mRNA-1:exon:25785;Parent=Msa0706810-mRNA-1
chr4_4	exon	79959365	79959455	79959365	ID=Msa0706810-mRNA-1:exon:25786;Parent=Msa0706810-mRNA-1
chr4_4	exon	79959623	79959787	79959623	ID=Msa0706810-mRNA-1:exon:25787;Parent=Msa0706810-mRNA-1
chr4_4	exon	79959879	79960001	79959879	ID=Msa0706810-mRNA-1:exon:25788;Parent=Msa0706810-mRNA-1
chr4_4	exon	79960297	79960372	79960297	ID=Msa0706810-mRNA-1:exon:25789;Parent=Msa0706810-mRNA-1
chr4_4	exon	79960519	79960657	79960519	ID=Msa0706810-mRNA-1:exon:25790;Parent=Msa0706810-mRNA-1
chr4_4	exon	79960796	79962588	79960796	ID=Msa0706810-mRNA-1:exon:25791;Parent=Msa0706810-mRNA-1
chr4_4	exon	79962714	79962904	79962714	ID=Msa0706810-mRNA-1:exon:25792;Parent=Msa0706810-mRNA-1
chr4_4	exon	79963032	79963655	79963032	ID=Msa0706810-mRNA-1:exon:25793;Parent=Msa0706810-mRNA-1
chr4_4	five_prime_UTR	79957820	79958006	79957820	ID=Msa0706810-mRNA-1:five_prime_utr;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79958007	79958064	79958007	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79958280	79958401	79958280	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79958550	79958648	79958550	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79958746	79958802	79958746	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79958909	79959064	79958909	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79959147	79959231	79959147	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79959365	79959455	79959365	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79959623	79959787	79959623	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79959879	79960001	79959879	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79960297	79960372	79960297	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79960519	79960657	79960519	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79960796	79962588	79960796	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79962714	79962904	79962714	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	CDS	79963032	79963167	79963032	ID=Msa0706810-mRNA-1:cds;Parent=Msa0706810-mRNA-1
chr4_4	three_prime_UTR	79963168	79963655	79963168	ID=Msa0706810-mRNA-1:three_prime_utr;Parent=Msa0706810-mRNA-1

Gene Sequence

>Msa0706810

ATGACCACCGCGCAGGAAGAAGGTCCCTCCGCCGCCATCGCCGCCGTAGCTCCCGCAGGAGAAGACAAGAATGACGGTGGCGTTAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTACCTGGTACCCATGTCGTTTACTTCCCTCAAGGCCACTCCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTCCAAGTACCAAACTATTCCAATCTTCCTTCCAAGTTGCCTTGTACTCTTCACTGTCTCACCTTACATGCAGATCCAGACACAGACGAAGTATATGCCCGGATGACACTTCAGCCAGTGTCTTCCTTTGACATGGATGCCATATTAAGATCAGATATTTCTCTCAAGTCGAACAAGCCACAACCTGAGTTTTTCTGCAAGCAACTGACAGCTAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCCCACTTGATTTCTCAACGCAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGAAATGTTTGGAAGTTCCGCCATATATACCGTGGACAACCGAAACGCCACTTGCTTACAACCGGATGGAGTCTATTTATCAGTGGAAAGAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGACAACCAACTAATTTATCTTCCTCAGTACTCTCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAATTTGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCATCAAATATCACCTGGCATGCGCTTTAGAATGATGTTTGAAACAGAAGACTCAGGAACAAGAAGATATATGGGTACAGTTATTGGTGTTAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAGTGGCGTAATTTGCAGGTTGGTTGGGATGAAGCCACCGCTGGGGAAAGGCGAAGTAGGGTCTCAACCTGGGAAATTGAACCTGTTACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTCAGACCCAAGAGACCAAGACAACCCGGAATGCCTGACGATGAGTCATTTGATTTCAGTAACCTTTTCAAGAATACAATGCCTTGGCTTGGTGATGATATGTGTATGAAGGATCCCCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCTGCTATGGCTAGCTCATTGCAACCAAATCATGTGCCTTCCATGCCTGCATCTGTCGTACAAAATCTTCCTGGATCCGATATTGCCCATCAATTGGGATTTTCCACTCAACAAATCTCTCAATCAAACAATGTAGCCTTCACTGCACCGGGGATGCCTCAGATGCTACCATCCACTTCTAGTGGATTGGGAGCAGTCATGCAGCCAGAACAACATTCTAGACAGAACTTGGCATATCAAACTCTACCGCAGAGTCAAGTTCAGACCCAACTTCTTAATCCCCAGAGTATTGTCCAAACGAACAATATTCTTCAATCACAACAACCGTCCATTCAAAACAATCAACTCCATAGAAGTCTCTCTCAGAACCCACTGCAACAGTTTCAACAGACTATAATTGGGCAAAACCAACCGCAAAATATGATTAGGCCCACTATGCCAGATCATATTAATCAACAGTTACATATGTCTGATAATCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGTCTCAGCAATCTGCATTGCAGCAGCCTGCTCAGATTATTCAAAACCATGACCAGCAGAGGCAAGAATTAGATGTCACACACAACTCTAGGGCAATAACTCCCCGTCAAGTGTTTGAAATTCCTCATACGCTTCAAAACTCACTGCTCGAGGCTAATTCTATGAACCATCAGATGACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCCCATCCAGCCAAGCAACAAAAGCTTCAACATCAACAACAGCAAACACAACCCGGCTCACTGTCTAAAATGTCTAGTCATGTTGGACTTCCTTCTGCAACTACTGCTAATCAGTTATCTGCTTCCGGTTGCAGTATACGGACTGTAGCAACTGGGACAGTACCATCGGTAAATACTGATAATGCTCCATCTTGTTCCACTTCGCCTTCCACAAATAACTGTGTTGGCGCGCTTCCTCCAGTGACCACATCCCAGATCCTTATGAGCACAATAGGGGATGACGTGGCTCAGTCTGCTGCGACCATCTTGAGTCAAAGTTCTAATGCAAATATGGTAAAATATGCACAGCCAAATTATGATGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACCCAGTGAATTTTTACCCTCAGACTTGCTTGAATGGTGCTGCTATCCAGACAGATTGTTTGGATACGTCGTCTTCTTCAACTTCAGTTTGCCTTTCTCAGAGTGATTCACGCTTTCATCAGGCTGACAAACCGTTATCTTACTATCCTCAGTCAATGTTTTCTAGAGACAACATTCAAAACTTGGAAGTTCAGGCTGATGCTAGGTGCAATGTTGCATATGGCAATAGCATGAATGGGCAAATGAAAATGCCACTGAATCTAGATTCTACGGTAACCAAAGGCACAACAAGACTGGGCAAGGATTTGTCAAATGATTTCTCTTCGGGAGGCTTGCTTGGGGGCTATGAAAATAACGGTGATGCCCAGGCAGAACTTTCATCTTCCATGGTTTCACAAACATGGGGAGTCCCTGATATGACCTTTAATTCGATTGATTCCACCATAAATGATAGTGATTTCTTGGATAGTGGTCCATGGGCTCCGCCGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGTTACGATGAGCTTAAACATGATCTGGCACGTAGGTTTGGTATTGAGGGACAACTAGAGGATCGACAACGAGTAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTAGATGGAGATTTTGGCAATGGTGGCCTTCCAAGACAGGCCAGTAGCAGCTCTGATGGCGGGATTGCTTAA

Protein sequence

>Msa0706810

MTTAQEEGPSAAIAAVAPAGEDKNDGGVNSELWQACAGPLVNLPLPGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCTLHCLTLHADPDTDEVYARMTLQPVSSFDMDAILRSDISLKSNKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSTQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDEATAGERRSRVSTWEIEPVTAPFFICPPPFFRPKRPRQPGMPDDESFDFSNLFKNTMPWLGDDMCMKDPQAFPGMSLAQWMNIQQNPAMASSLQPNHVPSMPASVVQNLPGSDIAHQLGFSTQQISQSNNVAFTAPGMPQMLPSTSSGLGAVMQPEQHSRQNLAYQTLPQSQVQTQLLNPQSIVQTNNILQSQQPSIQNNQLHRSLSQNPLQQFQQTIIGQNQPQNMIRPTMPDHINQQLHMSDNQVRLQLLQKLQQQQQTLLSQQSALQQPAQIIQNHDQQRQELDVTHNSRAITPRQVFEIPHTLQNSLLEANSMNHQMTDHSSQNNVQFSHPAKQQKLQHQQQQTQPGSLSKMSSHVGLPSATTANQLSASGCSIRTVATGTVPSVNTDNAPSCSTSPSTNNCVGALPPVTTSQILMSTIGDDVAQSAATILSQSSNANMVKYAQPNYDVKPCLNISENHNPVNFYPQTCLNGAAIQTDCLDTSSSSTSVCLSQSDSRFHQADKPLSYYPQSMFSRDNIQNLEVQADARCNVAYGNSMNGQMKMPLNLDSTVTKGTTRLGKDLSNDFSSGGLLGGYENNGDAQAELSSSMVSQTWGVPDMTFNSIDSTINDSDFLDSGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYDELKHDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPRQASSSSDGGIA*