Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714850 | AES94686.1 | 74.332 | 187 | 14 | 1 | 1 | 153 | 4 | 190 | 2.31e-81 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714850 | sp|P04146|COPIA_DROME | 38.211 | 123 | 69 | 2 | 156 | 271 | 1269 | 1391 | 5.42e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714850 | G7K6M9 | 74.332 | 187 | 14 | 1 | 1 | 153 | 4 | 190 | 1.10e-81 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714850 | Msa0714860 | 0.945987 | 1.086321e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714850 | MtrunA17_Chr5g0402141 | 74.332 | 187 | 14 | 1 | 1 | 153 | 4 | 190 | 3.25e-85 | 257 |
| Msa0714850 | MtrunA17_Chr2g0279121 | 73.797 | 187 | 15 | 1 | 1 | 153 | 4 | 190 | 2.34e-84 | 260 |
| Msa0714850 | MtrunA17_Chr2g0279121 | 92.632 | 95 | 7 | 0 | 270 | 364 | 196 | 290 | 8.33e-45 | 157 |
| Msa0714850 | MtrunA17_Chr1g0182471 | 82.836 | 134 | 17 | 1 | 144 | 271 | 46 | 179 | 2.27e-73 | 226 |
| Msa0714850 | MtrunA17_Chr7g0248591 | 82.090 | 134 | 18 | 1 | 144 | 271 | 94 | 227 | 6.25e-71 | 221 |
| Msa0714850 | MtrunA17_Chr1g0172711 | 93.220 | 59 | 4 | 0 | 213 | 271 | 5 | 63 | 1.11e-33 | 119 |
| Msa0714850 | MtrunA17_Chr3g0101191 | 48.611 | 144 | 68 | 1 | 134 | 271 | 1160 | 1303 | 9.96e-32 | 127 |
| Msa0714850 | MtrunA17_Chr3g0144121 | 40.984 | 122 | 66 | 1 | 156 | 271 | 1211 | 1332 | 1.04e-24 | 106 |
| Msa0714850 | MtrunA17_Chr8g0390891 | 40.984 | 122 | 66 | 1 | 156 | 271 | 842 | 963 | 1.21e-24 | 105 |
| Msa0714850 | MtrunA17_Chr7g0214321 | 44.828 | 116 | 58 | 1 | 156 | 265 | 58 | 173 | 5.86e-24 | 97.8 |
| Msa0714850 | MtrunA17_Chr1g0153361 | 39.167 | 120 | 68 | 1 | 157 | 271 | 1574 | 1693 | 3.69e-22 | 98.6 |
| Msa0714850 | MtrunA17_Chr1g0208691 | 36.552 | 145 | 86 | 1 | 132 | 270 | 1135 | 1279 | 2.79e-21 | 95.9 |
| Msa0714850 | MtrunA17_Chr1g0202521 | 35.593 | 118 | 70 | 1 | 156 | 267 | 58 | 175 | 2.96e-20 | 87.8 |
| Msa0714850 | MtrunA17_Chr3g0085391 | 38.261 | 115 | 66 | 1 | 157 | 266 | 359 | 473 | 4.65e-20 | 91.7 |
| Msa0714850 | MtrunA17_Chr3g0107241 | 39.655 | 116 | 64 | 1 | 132 | 241 | 144 | 259 | 1.86e-19 | 87.0 |
| Msa0714850 | MtrunA17_Chr4g0005281 | 33.613 | 119 | 73 | 1 | 156 | 268 | 39 | 157 | 4.90e-19 | 84.0 |
| Msa0714850 | MtrunA17_Chr6g0480691 | 38.393 | 112 | 63 | 1 | 161 | 266 | 362 | 473 | 6.76e-19 | 88.2 |
| Msa0714850 | MtrunA17_Chr2g0326511 | 36.800 | 125 | 73 | 1 | 156 | 274 | 250 | 374 | 9.39e-19 | 87.0 |
| Msa0714850 | MtrunA17_Chr7g0219281 | 36.800 | 125 | 73 | 1 | 156 | 274 | 358 | 482 | 1.53e-18 | 87.0 |
| Msa0714850 | MtrunA17_Chr2g0302511 | 36.434 | 129 | 76 | 1 | 144 | 266 | 463 | 591 | 1.68e-18 | 87.0 |
| Msa0714850 | MtrunA17_Chr3g0122931 | 31.618 | 136 | 87 | 1 | 144 | 273 | 872 | 1007 | 1.12e-17 | 85.1 |
| Msa0714850 | MtrunA17_Chr1g0162991 | 35.664 | 143 | 81 | 2 | 132 | 268 | 259 | 396 | 1.38e-17 | 83.6 |
| Msa0714850 | MtrunA17_Chr1g0168011 | 37.398 | 123 | 71 | 1 | 156 | 272 | 58 | 180 | 1.63e-17 | 80.1 |
| Msa0714850 | MtrunA17_Chr4g0056611 | 39.252 | 107 | 59 | 1 | 166 | 266 | 834 | 940 | 2.12e-17 | 84.0 |
| Msa0714850 | MtrunA17_Chr1g0208701 | 34.752 | 141 | 85 | 2 | 132 | 266 | 1135 | 1274 | 6.07e-17 | 82.8 |
| Msa0714850 | MtrunA17_Chr5g0447551 | 37.815 | 119 | 64 | 3 | 156 | 266 | 357 | 473 | 4.21e-16 | 80.1 |
| Msa0714850 | MtrunA17_Chr7g0229241 | 37.815 | 119 | 66 | 1 | 156 | 266 | 1152 | 1270 | 5.86e-16 | 79.7 |
| Msa0714850 | MtrunA17_Chr6g0474211 | 34.921 | 126 | 76 | 1 | 146 | 265 | 623 | 748 | 7.12e-16 | 79.3 |
| Msa0714850 | MtrunA17_Chr6g0468801 | 38.261 | 115 | 65 | 1 | 156 | 264 | 644 | 758 | 9.66e-16 | 79.0 |
| Msa0714850 | MtrunA17_Chr1g0213431 | 29.167 | 120 | 80 | 1 | 157 | 271 | 1343 | 1462 | 1.17e-15 | 79.0 |
| Msa0714850 | MtrunA17_Chr3g0122161 | 29.167 | 120 | 80 | 1 | 157 | 271 | 1354 | 1473 | 1.17e-15 | 79.0 |
| Msa0714850 | MtrunA17_Chr8g0337151 | 32.231 | 121 | 76 | 1 | 157 | 271 | 250 | 370 | 1.29e-15 | 77.4 |
| Msa0714850 | MtrunA17_Chr1g0213471 | 34.821 | 112 | 68 | 1 | 160 | 266 | 270 | 381 | 1.87e-15 | 77.4 |
| Msa0714850 | MtrunA17_Chr2g0279231 | 33.628 | 113 | 69 | 1 | 160 | 266 | 775 | 887 | 2.48e-15 | 77.8 |
| Msa0714850 | MtrunA17_Chr3g0117621 | 30.833 | 120 | 78 | 1 | 157 | 271 | 1367 | 1486 | 4.62e-15 | 77.0 |
| Msa0714850 | MtrunA17_Chr7g0271061 | 30.833 | 120 | 78 | 1 | 157 | 271 | 1367 | 1486 | 4.62e-15 | 77.0 |
| Msa0714850 | MtrunA17_Chr2g0320651 | 29.565 | 115 | 76 | 1 | 157 | 266 | 1354 | 1468 | 4.87e-15 | 77.0 |
| Msa0714850 | MtrunA17_Chr8g0363051 | 32.479 | 117 | 73 | 1 | 156 | 266 | 623 | 739 | 5.31e-15 | 76.6 |
| Msa0714850 | MtrunA17_Chr8g0351191 | 31.008 | 129 | 84 | 1 | 143 | 266 | 638 | 766 | 1.34e-14 | 75.5 |
| Msa0714850 | MtrunA17_Chr5g0395921 | 29.032 | 124 | 83 | 1 | 148 | 266 | 1213 | 1336 | 1.46e-14 | 75.5 |
| Msa0714850 | MtrunA17_Chr5g0417451 | 28.099 | 121 | 81 | 1 | 157 | 271 | 133 | 253 | 8.64e-13 | 68.2 |
| Msa0714850 | MtrunA17_Chr7g0235811 | 28.682 | 129 | 86 | 1 | 144 | 266 | 457 | 585 | 1.89e-12 | 68.6 |
| Msa0714850 | MtrunA17_Chr8g0376361 | 37.500 | 80 | 44 | 1 | 193 | 266 | 5 | 84 | 2.01e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714850 | AT5G09390.2 | 40.306 | 196 | 69 | 4 | 1 | 155 | 3 | 191 | 9.16e-28 | 112 |
| Msa0714850 | AT5G09390.2 | 40.373 | 161 | 85 | 5 | 205 | 357 | 123 | 280 | 1.80e-25 | 105 |
| Msa0714850 | AT5G09390.1 | 40.306 | 196 | 69 | 4 | 1 | 155 | 3 | 191 | 9.55e-28 | 112 |
| Msa0714850 | AT5G09390.1 | 40.373 | 161 | 85 | 5 | 205 | 357 | 123 | 280 | 1.91e-25 | 105 |
| Msa0714850 | AT4G23160.3 | 41.975 | 81 | 41 | 1 | 156 | 230 | 463 | 543 | 2.28e-12 | 68.9 |
| Msa0714850 | AT4G23160.2 | 41.975 | 81 | 41 | 1 | 156 | 230 | 463 | 543 | 2.28e-12 | 68.9 |
Find 66 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACACATCTCCATTCTTT+TGG | 0.227463 | 5_1:-7664102 | None:intergenic |
| CCTCCGTTTCACCCGCTCTT+TGG | 0.292313 | 5_1:-7660680 | None:intergenic |
| GCAAGAGAAGAAGGCATATC+TGG | 0.313491 | 5_1:+7664686 | Msa0714850:CDS |
| CGTCAGAGATAATGAGATTA+AGG | 0.313559 | 5_1:+7660879 | Msa0714850:CDS |
| TTCATGATTGCCTCATCTTT+AGG | 0.314399 | 5_1:-7660994 | None:intergenic |
| CAAGGCTTGAGAAGGTTAAA+AGG | 0.319398 | 5_1:+7664500 | Msa0714850:intron |
| TGAGGATGCTATGAAGCTTA+TGG | 0.343326 | 5_1:+7664583 | Msa0714850:CDS |
| GTGGAATCGTCGTTGTCTTC+AGG | 0.345291 | 5_1:-7660532 | None:intergenic |
| AGTTTCCCTTTCTTCCCTTT+CGG | 0.349174 | 5_1:-7660586 | None:intergenic |
| CGCTCTTTGGCAGCAACAAC+CGG | 0.356239 | 5_1:-7660667 | None:intergenic |
| GAAACTAGTTGATGTAATAT+TGG | 0.372127 | 5_1:+7660603 | Msa0714850:CDS |
| TTTACAAAAGCTCTTCCAAT+AGG | 0.373543 | 5_1:+7664163 | Msa0714850:CDS |
| CATCTTTAGGAGAGAGCTCT+TGG | 0.373602 | 5_1:-7660981 | None:intergenic |
| AGCCACAGCAGCTGTTAATC+AGG | 0.395100 | 5_1:+7663919 | Msa0714850:CDS |
| AGCAGATGGATACGAGAAAT+TGG | 0.414644 | 5_1:+7664658 | Msa0714850:CDS |
| AGTAACTCAAACCTGCCTAT+TGG | 0.424995 | 5_1:-7664178 | None:intergenic |
| CAAAAGCTCTTCCAATAGGC+AGG | 0.435502 | 5_1:+7664167 | Msa0714850:CDS |
| CGTTTATCATCAACATAAAG+AGG | 0.447056 | 5_1:+7664622 | Msa0714850:CDS |
| ATCCACTAGCTAAGAGGGTT+AGG | 0.448185 | 5_1:+7660560 | Msa0714850:CDS |
| GAGCTTAATCCAGCATATCT+AGG | 0.448682 | 5_1:-7660931 | None:intergenic |
| TGATTTGCACTTAGAGCAAA+GGG | 0.455228 | 5_1:+7663967 | Msa0714850:CDS |
| ATGGAACAGGGATATTCTCT+TGG | 0.464320 | 5_1:+7663840 | Msa0714850:CDS |
| CTCCGAGATGTCCAAAAGAA+TGG | 0.464615 | 5_1:+7664091 | Msa0714850:CDS |
| CTCTTCATCATTTGTTGCCG+CGG | 0.473818 | 5_1:-7660953 | None:intergenic |
| TGCTAATGTTCTTGAACAAG+AGG | 0.481020 | 5_1:+7661026 | Msa0714850:CDS |
| ATGGATACGAGAAATTGGTC+AGG | 0.503767 | 5_1:+7664663 | Msa0714850:CDS |
| TTGTAAAGATGTCTGACAGC+TGG | 0.511617 | 5_1:-7664147 | None:intergenic |
| CTGCCAAAGAGCGGGTGAAA+CGG | 0.511721 | 5_1:+7660677 | Msa0714850:CDS |
| GAGGCTGATCCTAGATATGC+TGG | 0.516203 | 5_1:+7660922 | Msa0714850:CDS |
| TGTGAATGATTTGTCGAATC+CGG | 0.518003 | 5_1:+7660648 | Msa0714850:CDS |
| TCATAGCATCCTCAGTTAGC+TGG | 0.523032 | 5_1:-7664574 | None:intergenic |
| GGTTGTTGCTGCCAAAGAGC+GGG | 0.527965 | 5_1:+7660669 | Msa0714850:CDS |
| TTGGTCAGGGCAAGAGAAGA+AGG | 0.529893 | 5_1:+7664677 | Msa0714850:CDS |
| GATATGTTTGCCGATGATGA+TGG | 0.532431 | 5_1:+7664725 | Msa0714850:CDS |
| TCGTCGTTGTCTTCAGGAAG+AGG | 0.536819 | 5_1:-7660526 | None:intergenic |
| AGGTTTCCGAAAGGGAAGAA+AGG | 0.538199 | 5_1:+7660580 | Msa0714850:CDS |
| CTGATTTGCACTTAGAGCAA+AGG | 0.539709 | 5_1:+7663966 | Msa0714850:CDS |
| GGTTTCCGAAAGGGAAGAAA+GGG | 0.556107 | 5_1:+7660581 | Msa0714850:CDS |
| CGCGGCAACAAATGATGAAG+AGG | 0.562933 | 5_1:+7660954 | Msa0714850:CDS |
| GGAGAAAGTAATTGCTGAGG+AGG | 0.566385 | 5_1:+7660624 | Msa0714850:CDS |
| AGAGGGTTAGGTTTCCGAAA+GGG | 0.569112 | 5_1:+7660572 | Msa0714850:CDS |
| GCTATGAAGCTTATGGAGAA+TGG | 0.574184 | 5_1:+7664590 | Msa0714850:CDS |
| AACCTAACCCTCTTAGCTAG+TGG | 0.577024 | 5_1:-7660562 | None:intergenic |
| ATAATGAGATTAAGGATGCA+TGG | 0.577768 | 5_1:+7660887 | Msa0714850:CDS |
| GGCAGCTTGTCCATCATCAT+CGG | 0.581969 | 5_1:-7664735 | None:intergenic |
| TTGAGAAGGTTAAAAGGCAG+CGG | 0.601512 | 5_1:+7664506 | Msa0714850:intron |
| CAGGAAGAGGGCGTTTACCG+CGG | 0.606859 | 5_1:-7660513 | None:intergenic |
| GGCAACAAATGATGAAGAGG+AGG | 0.610813 | 5_1:+7660957 | Msa0714850:CDS |
| CGGTTGTTGCTGCCAAAGAG+CGG | 0.611843 | 5_1:+7660668 | Msa0714850:CDS |
| CGTCGTTGTCTTCAGGAAGA+GGG | 0.622259 | 5_1:-7660525 | None:intergenic |
| AGAAGGCATATCTGGAAACT+CGG | 0.624324 | 5_1:+7664694 | Msa0714850:CDS |
| AAGAGGGTTAGGTTTCCGAA+AGG | 0.632998 | 5_1:+7660571 | Msa0714850:CDS |
| GAAGGTTCATCTCGCAGCCG+CGG | 0.645287 | 5_1:+7660496 | Msa0714850:CDS |
| TGGATACGAGAAATTGGTCA+GGG | 0.647057 | 5_1:+7664664 | Msa0714850:CDS |
| AAGATGAGGCAATCATGAAG+AGG | 0.649199 | 5_1:+7660998 | Msa0714850:CDS |
| CCAAAGAGCGGGTGAAACGG+AGG | 0.654484 | 5_1:+7660680 | Msa0714850:CDS |
| AGAGCTCTCTCCTAAAGATG+AGG | 0.657987 | 5_1:+7660984 | Msa0714850:CDS |
| GGCCTGATTAACAGCTGCTG+TGG | 0.658329 | 5_1:-7663921 | None:intergenic |
| TGTATTTGACCAGCTAACTG+AGG | 0.659418 | 5_1:+7664565 | Msa0714850:CDS |
| ATTGGAGAAAGTAATTGCTG+AGG | 0.661864 | 5_1:+7660621 | Msa0714850:CDS |
| TTCATCTGTAGATGGCGTAG+TGG | 0.662999 | 5_1:-7664756 | None:intergenic |
| AGAAGGTTAAAAGGCAGCGG+TGG | 0.665655 | 5_1:+7664509 | Msa0714850:intron |
| CAGCTGTTAATCAGGCCTTG+TGG | 0.666037 | 5_1:+7663927 | Msa0714850:CDS |
| TGCATGGCTTGATAATGTTG+AGG | 0.687569 | 5_1:+7660903 | Msa0714850:CDS |
| AGAGCAAAGGGAAACTACTG+AGG | 0.696043 | 5_1:+7663979 | Msa0714850:CDS |
| ATATGCTGGATTAAGCTCCG+CGG | 0.764140 | 5_1:+7660936 | Msa0714850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAGCTAATAAAGTAG+TGG | + | chr5_1:7661140-7661159 | Msa0714850:intron | 20.0% |
| !!! | TATTTTGGAGATTTAAGAAT+TGG | + | chr5_1:7662211-7662230 | Msa0714850:intron | 20.0% |
| !!! | ATTTTTAAATGGATTTCTAG+AGG | + | chr5_1:7663046-7663065 | Msa0714850:intron | 20.0% |
| !! | GATGTTAAAGAAATTCAATA+TGG | + | chr5_1:7663463-7663482 | Msa0714850:intron | 20.0% |
| !! | TTTACAACATACAAAATATC+TGG | - | chr5_1:7663620-7663639 | None:intergenic | 20.0% |
| !! | AAACTTAATGCCAAAATTTA+TGG | - | chr5_1:7663723-7663742 | None:intergenic | 20.0% |
| !! | TTAATTAGCTAATAAAGTAG+TGG | + | chr5_1:7661140-7661159 | Msa0714850:intron | 20.0% |
| !! | GAAACTAGTTGATGTAATAT+TGG | + | chr5_1:7660603-7660622 | Msa0714850:CDS | 25.0% |
| !! | AATGAGAATTTTGTTGAAGA+CGG | + | chr5_1:7660778-7660797 | Msa0714850:intron | 25.0% |
| ! | TTTCAACCTAGATAAAGAAA+GGG | + | chr5_1:7660816-7660835 | Msa0714850:intron | 25.0% |
| ! | TTATACGTAACTCAGAAAAT+AGG | - | chr5_1:7661268-7661287 | None:intergenic | 25.0% |
| !! | AGATAGTGTTTAAGCTTTTA+TGG | - | chr5_1:7661358-7661377 | None:intergenic | 25.0% |
| ! | ATGGTGAAAACTATCATATA+TGG | + | chr5_1:7661441-7661460 | Msa0714850:intron | 25.0% |
| ! | TGGTGAAAACTATCATATAT+GGG | + | chr5_1:7661442-7661461 | Msa0714850:intron | 25.0% |
| ! | CAAATATCAAAAGTCAGAAT+CGG | + | chr5_1:7661577-7661596 | Msa0714850:intron | 25.0% |
| !! | TTTTTCATTTGATCCAATGA+AGG | + | chr5_1:7661828-7661847 | Msa0714850:intron | 25.0% |
| !! | AGTATTGAATTTGCAAAGAA+AGG | + | chr5_1:7661930-7661949 | Msa0714850:intron | 25.0% |
| ! | AAAATAAATCCAACACATTC+TGG | - | chr5_1:7662163-7662182 | None:intergenic | 25.0% |
| !!! | AACTCATCTTGATTTTGAAA+AGG | - | chr5_1:7662612-7662631 | None:intergenic | 25.0% |
| !! | TTTTAATAAGTTTCCAAGTC+TGG | - | chr5_1:7662791-7662810 | None:intergenic | 25.0% |
| ! | AGACTTGGAAACTTATTAAA+AGG | + | chr5_1:7662790-7662809 | Msa0714850:intron | 25.0% |
| !! | CTATTAAAGAAAGCTTTGTA+TGG | + | chr5_1:7663131-7663150 | Msa0714850:intron | 25.0% |
| ! | TTAAACAGCCAATTAAACTT+CGG | - | chr5_1:7663577-7663596 | None:intergenic | 25.0% |
| ! | TTATACGTAACTCAGAAAAT+AGG | - | chr5_1:7661268-7661287 | None:intergenic | 25.0% |
| ! | ATGAGAATTTTGTTGAAGAC+GGG | + | chr5_1:7660779-7660798 | Msa0714850:intron | 30.0% |
| ! | CTTTCTTTATCTAGGTTGAA+AGG | - | chr5_1:7660817-7660836 | None:intergenic | 30.0% |
| CTTTCAACCTAGATAAAGAA+AGG | + | chr5_1:7660815-7660834 | Msa0714850:intron | 30.0% | |
| !!! | GAAGGTTATTTTGATGCATT+CGG | + | chr5_1:7660841-7660860 | Msa0714850:intron | 30.0% |
| ATAATGAGATTAAGGATGCA+TGG | + | chr5_1:7660887-7660906 | Msa0714850:CDS | 30.0% | |
| AACAAATTCTCCTAAAGACT+TGG | - | chr5_1:7661104-7661123 | None:intergenic | 30.0% | |
| TAAAGTAGTGGCTAAAGATT+AGG | + | chr5_1:7661152-7661171 | Msa0714850:intron | 30.0% | |
| ! | AGTGTTTAAGCTTTTATGGT+GGG | - | chr5_1:7661354-7661373 | None:intergenic | 30.0% |
| ! | TAGTGTTTAAGCTTTTATGG+TGG | - | chr5_1:7661355-7661374 | None:intergenic | 30.0% |
| CTTTCAATTCATCAATCAGA+TGG | + | chr5_1:7661376-7661395 | Msa0714850:intron | 30.0% | |
| !!! | TTTTTTATCTGAGCCATTGT+TGG | - | chr5_1:7661554-7661573 | None:intergenic | 30.0% |
| GCTGAAAATTACCTTATCAT+TGG | - | chr5_1:7661788-7661807 | None:intergenic | 30.0% | |
| TGGTTAATAGTACAGAGATA+TGG | + | chr5_1:7661875-7661894 | Msa0714850:intron | 30.0% | |
| AATTGGATTGAAAAGCAAAG+TGG | + | chr5_1:7662228-7662247 | Msa0714850:intron | 30.0% | |
| !! | GTTGTGTGATTCAAGTTTTA+AGG | + | chr5_1:7662250-7662269 | Msa0714850:intron | 30.0% |
| AAGGAAGAACAGAACAATAA+TGG | + | chr5_1:7662386-7662405 | Msa0714850:intron | 30.0% | |
| ! | GAACAGAACAATAATGGAAA+TGG | + | chr5_1:7662392-7662411 | Msa0714850:intron | 30.0% |
| AAGGATTGCCTAAAGAATAT+TGG | + | chr5_1:7662436-7662455 | Msa0714850:intron | 30.0% | |
| AGGATTGCCTAAAGAATATT+GGG | + | chr5_1:7662437-7662456 | Msa0714850:intron | 30.0% | |
| ATGCAAAAAAAGATCCCAAA+TGG | + | chr5_1:7662724-7662743 | Msa0714850:intron | 30.0% | |
| AAAAAAAGATCCCAAATGGA+GGG | + | chr5_1:7662728-7662747 | Msa0714850:intron | 30.0% | |
| !! | AAAGGGTATGCTCAAATTTT+TGG | + | chr5_1:7662909-7662928 | Msa0714850:intron | 30.0% |
| ! | GTCAAGTCAGCATTTTTAAA+TGG | + | chr5_1:7663035-7663054 | Msa0714850:intron | 30.0% |
| ! | ACATATAAAGTGGATTCACT+TGG | - | chr5_1:7663230-7663249 | None:intergenic | 30.0% |
| GAATCCACTTTATATGTCAA+AGG | + | chr5_1:7663233-7663252 | Msa0714850:intron | 30.0% | |
| ATCACCTTTGACATATAAAG+TGG | - | chr5_1:7663240-7663259 | None:intergenic | 30.0% | |
| !!! | AGGTGATCAAGCTAATTTTT+TGG | + | chr5_1:7663253-7663272 | Msa0714850:intron | 30.0% |
| GAGATATATTCATCTGTCAA+AGG | + | chr5_1:7663426-7663445 | Msa0714850:intron | 30.0% | |
| GCTAAAGAATCTCATTTCAA+AGG | + | chr5_1:7663665-7663684 | Msa0714850:intron | 30.0% | |
| ! | GTTAAGGGAACCATAAATTT+TGG | + | chr5_1:7663710-7663729 | Msa0714850:intron | 30.0% |
| !! | TCGGAAAATTTCAAGTTACA+AGG | + | chr5_1:7663749-7663768 | Msa0714850:intron | 30.0% |
| !!! | TACTGTTTTAGTTATGGAAC+AGG | + | chr5_1:7663827-7663846 | Msa0714850:CDS | 30.0% |
| !!! | ACTGTTTTAGTTATGGAACA+GGG | + | chr5_1:7663828-7663847 | Msa0714850:CDS | 30.0% |
| TTTACAAAAGCTCTTCCAAT+AGG | + | chr5_1:7664163-7664182 | Msa0714850:CDS | 30.0% | |
| AATATCCAACTACTGATACA+AGG | + | chr5_1:7664216-7664235 | Msa0714850:intron | 30.0% | |
| AACAAATTCTCCTAAAGACT+TGG | - | chr5_1:7661104-7661123 | None:intergenic | 30.0% | |
| TAAAGTAGTGGCTAAAGATT+AGG | + | chr5_1:7661152-7661171 | Msa0714850:intron | 30.0% | |
| GGTAGAAAAACAAAAATGTC+TGG | + | chr5_1:7664530-7664549 | Msa0714850:CDS | 30.0% | |
| CGTTTATCATCAACATAAAG+AGG | + | chr5_1:7664622-7664641 | Msa0714850:CDS | 30.0% | |
| ! | GCATTATTTTCATCTGTAGA+TGG | - | chr5_1:7664767-7664786 | None:intergenic | 30.0% |
| CAAAAATCCACTAGCTAAGA+GGG | + | chr5_1:7660555-7660574 | Msa0714850:CDS | 35.0% | |
| ATTGGAGAAAGTAATTGCTG+AGG | + | chr5_1:7660621-7660640 | Msa0714850:CDS | 35.0% | |
| ! | TGTGAATGATTTGTCGAATC+CGG | + | chr5_1:7660648-7660667 | Msa0714850:CDS | 35.0% |
| !! | GAGCTTTTTAGTGACGAAAA+CGG | + | chr5_1:7660718-7660737 | Msa0714850:CDS | 35.0% |
| CTTCTTCCCTTTCTTTATCT+AGG | - | chr5_1:7660825-7660844 | None:intergenic | 35.0% | |
| CTAGATAAAGAAAGGGAAGA+AGG | + | chr5_1:7660823-7660842 | Msa0714850:intron | 35.0% | |
| CGTCAGAGATAATGAGATTA+AGG | + | chr5_1:7660879-7660898 | Msa0714850:CDS | 35.0% | |
| TTCATGATTGCCTCATCTTT+AGG | - | chr5_1:7660997-7661016 | None:intergenic | 35.0% | |
| TGCTAATGTTCTTGAACAAG+AGG | + | chr5_1:7661026-7661045 | Msa0714850:CDS | 35.0% | |
| CGTAACTCAGAAAATAGGAA+GGG | - | chr5_1:7661263-7661282 | None:intergenic | 35.0% | |
| ACGTAACTCAGAAAATAGGA+AGG | - | chr5_1:7661264-7661283 | None:intergenic | 35.0% | |
| ACGTATAAACACCAACAGAT+TGG | + | chr5_1:7661280-7661299 | Msa0714850:intron | 35.0% | |
| !! | ATCAAACACAGGTATTGGTA+GGG | - | chr5_1:7661423-7661442 | None:intergenic | 35.0% |
| ! | TAGTTTTCACCATCAAACAC+AGG | - | chr5_1:7661434-7661453 | None:intergenic | 35.0% |
| ATTGTTGGATTGTCTGACAA+AGG | - | chr5_1:7661539-7661558 | None:intergenic | 35.0% | |
| TTTGTCAGACAATCCAACAA+TGG | + | chr5_1:7661538-7661557 | Msa0714850:intron | 35.0% | |
| TCAAAAGTCAGAATCGGTAA+TGG | + | chr5_1:7661583-7661602 | Msa0714850:intron | 35.0% | |
| !! | AGCAAGTTTTGATCAATCTC+AGG | - | chr5_1:7661694-7661713 | None:intergenic | 35.0% |
| GTGGGTCAATTACTTGATAA+AGG | + | chr5_1:7661718-7661737 | Msa0714850:intron | 35.0% | |
| GATCAAAGATGCCAATGATA+AGG | + | chr5_1:7661774-7661793 | Msa0714850:intron | 35.0% | |
| TTCATTTGATCCAATGAAGG+AGG | + | chr5_1:7661831-7661850 | Msa0714850:intron | 35.0% | |
| TCTGTACTATTAACCATAGC+TGG | - | chr5_1:7661871-7661890 | None:intergenic | 35.0% | |
| GAGATATGGCACAAAAGATT+AGG | + | chr5_1:7661889-7661908 | Msa0714850:intron | 35.0% | |
| ATACTGCTGCATGATGAAAA+TGG | - | chr5_1:7661915-7661934 | None:intergenic | 35.0% | |
| GAATTTGCAAAGAAAGGATC+TGG | + | chr5_1:7661936-7661955 | Msa0714850:intron | 35.0% | |
| GGTAATTCAGCATCTAAATG+AGG | - | chr5_1:7661973-7661992 | None:intergenic | 35.0% | |
| TTAAGTGAAGCTGTTCTTTG+CGG | - | chr5_1:7662102-7662121 | None:intergenic | 35.0% | |
| ATGATTACACCAGAATGTGT+TGG | + | chr5_1:7662151-7662170 | Msa0714850:intron | 35.0% | |
| !!! | CAAGTTTTAAGGTCTGACAA+TGG | + | chr5_1:7662261-7662280 | Msa0714850:intron | 35.0% |
| ACAATTCACTATGTTCTGTG+AGG | + | chr5_1:7662302-7662321 | Msa0714850:intron | 35.0% | |
| AACAAAATGGAGTGAGTGAA+AGG | + | chr5_1:7662367-7662386 | Msa0714850:intron | 35.0% | |
| CAAAAAAAGATCCCAAATGG+AGG | + | chr5_1:7662727-7662746 | Msa0714850:intron | 35.0% | |
| !!! | AGTCTGGTTTTTATCGATCA+TGG | - | chr5_1:7662775-7662794 | None:intergenic | 35.0% |
| TGATCGATAAAAACCAGACT+TGG | + | chr5_1:7662775-7662794 | Msa0714850:intron | 35.0% | |
| CTGAGCATAAAAGAGTCATA+GGG | + | chr5_1:7662814-7662833 | Msa0714850:intron | 35.0% | |
| TGAGCATAAAAGAGTCATAG+GGG | + | chr5_1:7662815-7662834 | Msa0714850:intron | 35.0% | |
| TTAGCTATTGCAGCACAAAA+GGG | + | chr5_1:7662990-7663009 | Msa0714850:intron | 35.0% | |
| ATATATGTTGAGCAACCTGA+AGG | + | chr5_1:7663074-7663093 | Msa0714850:intron | 35.0% | |
| !!! | CTGAAGGTTTTGTTGTGAAA+GGG | + | chr5_1:7663090-7663109 | Msa0714850:intron | 35.0% |
| !! | GGAGAAATGTCTTATTTCCT+TGG | + | chr5_1:7663380-7663399 | Msa0714850:intron | 35.0% |
| !! | AATGTCTTATTTCCTTGGCA+TGG | + | chr5_1:7663385-7663404 | Msa0714850:intron | 35.0% |
| ACACTCTACCGAAGTTTAAT+TGG | + | chr5_1:7663566-7663585 | Msa0714850:intron | 35.0% | |
| !! | AAGAGTGTTGAGGTATGTTA+AGG | + | chr5_1:7663694-7663713 | Msa0714850:intron | 35.0% |
| !! | AGAGTGTTGAGGTATGTTAA+GGG | + | chr5_1:7663695-7663714 | Msa0714850:intron | 35.0% |
| !! | TGGCATTAAGTTTTGTCGAT+CGG | + | chr5_1:7663730-7663749 | Msa0714850:intron | 35.0% |
| AAGGTTACTCAGATAGTGAT+TGG | + | chr5_1:7663768-7663787 | Msa0714850:intron | 35.0% | |
| !!! | TCAGGCTACTGTTTTAGTTA+TGG | + | chr5_1:7663821-7663840 | Msa0714850:intron | 35.0% |
| ! | TAGAACTTTTCTTAGCCACA+AGG | - | chr5_1:7663945-7663964 | None:intergenic | 35.0% |
| ! | TGATTTGCACTTAGAGCAAA+GGG | + | chr5_1:7663967-7663986 | Msa0714850:CDS | 35.0% |
| !! | AAAGACAGGATTTTTGGAGA+TGG | - | chr5_1:7664032-7664051 | None:intergenic | 35.0% |
| TCCAAAAATCCTGTCTTTCA+CGG | + | chr5_1:7664034-7664053 | Msa0714850:CDS | 35.0% | |
| !!! | TTTGTTTTACCGTGAAAGAC+AGG | - | chr5_1:7664046-7664065 | None:intergenic | 35.0% |
| ! | AACACACATCTCCATTCTTT+TGG | - | chr5_1:7664105-7664124 | None:intergenic | 35.0% |
| CGTAACTCAGAAAATAGGAA+GGG | - | chr5_1:7661263-7661282 | None:intergenic | 35.0% | |
| ACGTAACTCAGAAAATAGGA+AGG | - | chr5_1:7661264-7661283 | None:intergenic | 35.0% | |
| !!! | CTTAGCTAGTGGATTTTTGG+TGG | - | chr5_1:7660554-7660573 | None:intergenic | 40.0% |
| !!! | CCTCTTAGCTAGTGGATTTT+TGG | - | chr5_1:7660557-7660576 | None:intergenic | 40.0% |
| CCAAAAATCCACTAGCTAAG+AGG | + | chr5_1:7660554-7660573 | Msa0714850:CDS | 40.0% | |
| AGTTTCCCTTTCTTCCCTTT+CGG | - | chr5_1:7660589-7660608 | None:intergenic | 40.0% | |
| !! | CTTTTTAGTGACGAAAACGG+AGG | + | chr5_1:7660721-7660740 | Msa0714850:CDS | 40.0% |
| !! | CGAAAACGGAGGTATTTCAA+AGG | + | chr5_1:7660732-7660751 | Msa0714850:intron | 40.0% |
| GGTTGCTGAAGTTACATACA+AGG | + | chr5_1:7660753-7660772 | Msa0714850:intron | 40.0% | |
| !! | TGCATGGCTTGATAATGTTG+AGG | + | chr5_1:7660903-7660922 | Msa0714850:CDS | 40.0% |
| GAGCTTAATCCAGCATATCT+AGG | - | chr5_1:7660934-7660953 | None:intergenic | 40.0% | |
| AAGATGAGGCAATCATGAAG+AGG | + | chr5_1:7660998-7661017 | Msa0714850:CDS | 40.0% | |
| ! | CACTGATTGACCAAGTCTTT+AGG | + | chr5_1:7661091-7661110 | Msa0714850:intron | 40.0% |
| ! | CACAAGTCTCTCTAAGAAGA+AGG | - | chr5_1:7661315-7661334 | None:intergenic | 40.0% |
| !! | CATCAAACACAGGTATTGGT+AGG | - | chr5_1:7661424-7661443 | None:intergenic | 40.0% |
| CTACCAATACCTGTGTTTGA+TGG | + | chr5_1:7661422-7661441 | Msa0714850:intron | 40.0% | |
| TCACCATCAAACACAGGTAT+TGG | - | chr5_1:7661428-7661447 | None:intergenic | 40.0% | |
| TCATATATGGGCAGCAAGAA+TGG | + | chr5_1:7661454-7661473 | Msa0714850:intron | 40.0% | |
| ! | AAGAATGGAGGCGTATTTAG+AGG | + | chr5_1:7661469-7661488 | Msa0714850:intron | 40.0% |
| ATTTAGAGGCAAATGACCTC+TGG | + | chr5_1:7661483-7661502 | Msa0714850:intron | 40.0% | |
| TTTAGAGGCAAATGACCTCT+GGG | + | chr5_1:7661484-7661503 | Msa0714850:intron | 40.0% | |
| GGTAAACTGATTGATGTCGA+AGG | + | chr5_1:7661604-7661623 | Msa0714850:intron | 40.0% | |
| CTGATTGATGTCGAAGGAAA+AGG | + | chr5_1:7661610-7661629 | Msa0714850:intron | 40.0% | |
| TGTACCTGTGCAACTTTCAA+TGG | - | chr5_1:7661644-7661663 | None:intergenic | 40.0% | |
| !! | TGATCAAAACTTGCTGAGTG+TGG | + | chr5_1:7661699-7661718 | Msa0714850:intron | 40.0% |
| !! | GATCAAAACTTGCTGAGTGT+GGG | + | chr5_1:7661700-7661719 | Msa0714850:intron | 40.0% |
| GCAAATAGCTTATCCAGCTA+TGG | + | chr5_1:7661855-7661874 | Msa0714850:intron | 40.0% | |
| ! | TTTTCTCAAGTCCAAGTCAG+AGG | + | chr5_1:7662179-7662198 | Msa0714850:intron | 40.0% |
| ATTCACTATGTTCTGTGAGG+AGG | + | chr5_1:7662305-7662324 | Msa0714850:intron | 40.0% | |
| !! | CATTTTGTTGAGGGGTGTAA+GGG | - | chr5_1:7662356-7662375 | None:intergenic | 40.0% |
| ! | ACTCACTCCATTTTGTTGAG+GGG | - | chr5_1:7662364-7662383 | None:intergenic | 40.0% |
| ! | CACTCACTCCATTTTGTTGA+GGG | - | chr5_1:7662365-7662384 | None:intergenic | 40.0% |
| ! | TCACTCACTCCATTTTGTTG+AGG | - | chr5_1:7662366-7662385 | None:intergenic | 40.0% |
| AGATGCATGCTTCATGAGAA+AGG | + | chr5_1:7662417-7662436 | Msa0714850:intron | 40.0% | |
| TGGTGGGAAGTCTATTAAGT+AGG | - | chr5_1:7662488-7662507 | None:intergenic | 40.0% | |
| !!! | GAAGACTCCTTTTGAAGCTT+GGG | + | chr5_1:7662521-7662540 | Msa0714850:intron | 40.0% |
| AATCTAGTACCTCTTACAGG+AGG | - | chr5_1:7662645-7662664 | None:intergenic | 40.0% | |
| AGCAATCTAGTACCTCTTAC+AGG | - | chr5_1:7662648-7662667 | None:intergenic | 40.0% | |
| TCCTTGAACCTGCATGATAT+TGG | + | chr5_1:7662700-7662719 | Msa0714850:intron | 40.0% | |
| CCTTGAACCTGCATGATATT+GGG | + | chr5_1:7662701-7662720 | Msa0714850:intron | 40.0% | |
| TTTGCATCCCAATATCATGC+AGG | - | chr5_1:7662711-7662730 | None:intergenic | 40.0% | |
| ! | CCTATGACTCTTTTATGCTC+AGG | - | chr5_1:7662816-7662835 | None:intergenic | 40.0% |
| CCTGAGCATAAAAGAGTCAT+AGG | + | chr5_1:7662813-7662832 | Msa0714850:intron | 40.0% | |
| AGAACAAAGCTAAACGCAGA+TGG | + | chr5_1:7662852-7662871 | Msa0714850:intron | 40.0% | |
| CAATCAACAAGCATAAAGCC+AGG | + | chr5_1:7662877-7662896 | Msa0714850:intron | 40.0% | |
| AAAGCCAGGTTAGTGGTTAA+AGG | + | chr5_1:7662891-7662910 | Msa0714850:intron | 40.0% | |
| AAGCCAGGTTAGTGGTTAAA+GGG | + | chr5_1:7662892-7662911 | Msa0714850:intron | 40.0% | |
| ATACCCTTTAACCACTAACC+TGG | - | chr5_1:7662898-7662917 | None:intergenic | 40.0% | |
| ATACATTTGCTCCAGTTGCT+AGG | + | chr5_1:7662946-7662965 | Msa0714850:intron | 40.0% | |
| ATAGTATCTTGCCTAGCAAC+TGG | - | chr5_1:7662960-7662979 | None:intergenic | 40.0% | |
| GTTAGCTATTGCAGCACAAA+AGG | + | chr5_1:7662989-7663008 | Msa0714850:intron | 40.0% | |
| CCTTTCACAACAAAACCTTC+AGG | - | chr5_1:7663092-7663111 | None:intergenic | 40.0% | |
| !!! | CCTGAAGGTTTTGTTGTGAA+AGG | + | chr5_1:7663089-7663108 | Msa0714850:intron | 40.0% |
| !! | GTTGATGATCTCCTAGTTAC+TGG | + | chr5_1:7663290-7663309 | Msa0714850:intron | 40.0% |
| ! | TGAACTGATTCAGCAGTTCA+AGG | + | chr5_1:7663322-7663341 | Msa0714850:intron | 40.0% |
| ! | AGTGTTTGAGATGTCAGACT+TGG | + | chr5_1:7663358-7663377 | Msa0714850:intron | 40.0% |
| ! | GTGTTTGAGATGTCAGACTT+GGG | + | chr5_1:7663359-7663378 | Msa0714850:intron | 40.0% |
| ATGGAAGTTGAGCAGAAAAG+TGG | + | chr5_1:7663404-7663423 | Msa0714850:intron | 40.0% | |
| ! | CTGTCAAAGGAAGTATGCAA+AGG | + | chr5_1:7663439-7663458 | Msa0714850:intron | 40.0% |
| !! | AAGGAGCAAAAAGAGTGTTG+AGG | + | chr5_1:7663684-7663703 | Msa0714850:intron | 40.0% |
| ! | TACTCAGATAGTGATTGGTC+AGG | + | chr5_1:7663773-7663792 | Msa0714850:intron | 40.0% |
| ! | TAGTGATTGGTCAGGATCTT+TGG | + | chr5_1:7663781-7663800 | Msa0714850:intron | 40.0% |
| !! | GATGACATGAAAAGCACTTC+AGG | + | chr5_1:7663803-7663822 | Msa0714850:intron | 40.0% |
| ATGGAACAGGGATATTCTCT+TGG | + | chr5_1:7663840-7663859 | Msa0714850:CDS | 40.0% | |
| ! | CTGATTTGCACTTAGAGCAA+AGG | + | chr5_1:7663966-7663985 | Msa0714850:CDS | 40.0% |
| AAGGGAAACTACTGAGGTAA+TGG | + | chr5_1:7663985-7664004 | Msa0714850:intron | 40.0% | |
| !! | AGGATTTTTGGAGATGGCAA+TGG | - | chr5_1:7664026-7664045 | None:intergenic | 40.0% |
| ! | ACCGTGAAAGACAGGATTTT+TGG | - | chr5_1:7664038-7664057 | None:intergenic | 40.0% |
| ! | CTCCATTCTTTTGGACATCT+CGG | - | chr5_1:7664096-7664115 | None:intergenic | 40.0% |
| TTGTAAAGATGTCTGACAGC+TGG | - | chr5_1:7664150-7664169 | None:intergenic | 40.0% | |
| AGTAACTCAAACCTGCCTAT+TGG | - | chr5_1:7664181-7664200 | None:intergenic | 40.0% | |
| ! | TAGGCAGGTTTGAGTTACTA+AGG | + | chr5_1:7664182-7664201 | Msa0714850:intron | 40.0% |
| ! | AGGCAGGTTTGAGTTACTAA+GGG | + | chr5_1:7664183-7664202 | Msa0714850:intron | 40.0% |
| GAGTTACTAAGGGAGAAACT+TGG | + | chr5_1:7664193-7664212 | Msa0714850:intron | 40.0% | |
| ATCCAACTACTGATACAAGG+AGG | + | chr5_1:7664219-7664238 | Msa0714850:intron | 40.0% | |
| ! | CACTGATTGACCAAGTCTTT+AGG | + | chr5_1:7661091-7661110 | Msa0714850:intron | 40.0% |
| CAAGGCTTGAGAAGGTTAAA+AGG | + | chr5_1:7664500-7664519 | Msa0714850:intron | 40.0% | |
| TTGAGAAGGTTAAAAGGCAG+CGG | + | chr5_1:7664506-7664525 | Msa0714850:intron | 40.0% | |
| TGTATTTGACCAGCTAACTG+AGG | + | chr5_1:7664565-7664584 | Msa0714850:CDS | 40.0% | |
| TGAGGATGCTATGAAGCTTA+TGG | + | chr5_1:7664583-7664602 | Msa0714850:CDS | 40.0% | |
| GCTATGAAGCTTATGGAGAA+TGG | + | chr5_1:7664590-7664609 | Msa0714850:CDS | 40.0% | |
| AGCAGATGGATACGAGAAAT+TGG | + | chr5_1:7664658-7664677 | Msa0714850:CDS | 40.0% | |
| ATGGATACGAGAAATTGGTC+AGG | + | chr5_1:7664663-7664682 | Msa0714850:CDS | 40.0% | |
| TGGATACGAGAAATTGGTCA+GGG | + | chr5_1:7664664-7664683 | Msa0714850:CDS | 40.0% | |
| ! | AGAAGGCATATCTGGAAACT+CGG | + | chr5_1:7664694-7664713 | Msa0714850:CDS | 40.0% |
| GATATGTTTGCCGATGATGA+TGG | + | chr5_1:7664725-7664744 | Msa0714850:CDS | 40.0% | |
| ATCCACTAGCTAAGAGGGTT+AGG | + | chr5_1:7660560-7660579 | Msa0714850:CDS | 45.0% | |
| AACCTAACCCTCTTAGCTAG+TGG | - | chr5_1:7660565-7660584 | None:intergenic | 45.0% | |
| AAGAGGGTTAGGTTTCCGAA+AGG | + | chr5_1:7660571-7660590 | Msa0714850:CDS | 45.0% | |
| AGAGGGTTAGGTTTCCGAAA+GGG | + | chr5_1:7660572-7660591 | Msa0714850:CDS | 45.0% | |
| AGGTTTCCGAAAGGGAAGAA+AGG | + | chr5_1:7660580-7660599 | Msa0714850:CDS | 45.0% | |
| GGTTTCCGAAAGGGAAGAAA+GGG | + | chr5_1:7660581-7660600 | Msa0714850:CDS | 45.0% | |
| GGAGAAAGTAATTGCTGAGG+AGG | + | chr5_1:7660624-7660643 | Msa0714850:CDS | 45.0% | |
| ATATGCTGGATTAAGCTCCG+CGG | + | chr5_1:7660936-7660955 | Msa0714850:CDS | 45.0% | |
| ! | CTCTTCATCATTTGTTGCCG+CGG | - | chr5_1:7660956-7660975 | None:intergenic | 45.0% |
| GGCAACAAATGATGAAGAGG+AGG | + | chr5_1:7660957-7660976 | Msa0714850:CDS | 45.0% | |
| ! | CATCTTTAGGAGAGAGCTCT+TGG | - | chr5_1:7660984-7661003 | None:intergenic | 45.0% |
| AGAGCTCTCTCCTAAAGATG+AGG | + | chr5_1:7660984-7661003 | Msa0714850:CDS | 45.0% | |
| !! | GGCTCTAGATACCAATCTGT+TGG | - | chr5_1:7661294-7661313 | None:intergenic | 45.0% |
| !! | AGGTATTGGTAGGGCTTTGT+AGG | - | chr5_1:7661414-7661433 | None:intergenic | 45.0% |
| TATATGGGCAGCAAGAATGG+AGG | + | chr5_1:7661457-7661476 | Msa0714850:intron | 45.0% | |
| TGTGCAACTTTCAATGGCCA+CGG | - | chr5_1:7661638-7661657 | None:intergenic | 45.0% | |
| GCTATTTGCTCCTCCTTCAT+TGG | - | chr5_1:7661844-7661863 | None:intergenic | 45.0% | |
| ! | CAAAGAAAGGATCTGGCTCA+AGG | + | chr5_1:7661943-7661962 | Msa0714850:intron | 45.0% |
| TGCTGAATTACCAAGCTGCA+AGG | + | chr5_1:7661981-7662000 | Msa0714850:intron | 45.0% | |
| ! | GCAACTGATTCACACAGATC+TGG | + | chr5_1:7662071-7662090 | Msa0714850:intron | 45.0% |
| !! | CCATTTTGTTGAGGGGTGTA+AGG | - | chr5_1:7662357-7662376 | None:intergenic | 45.0% |
| CCTTACACCCCTCAACAAAA+TGG | + | chr5_1:7662354-7662373 | Msa0714850:intron | 45.0% | |
| GCCTAAAGAATATTGGGCAG+AGG | + | chr5_1:7662443-7662462 | Msa0714850:intron | 45.0% | |
| GCCTCTGCCCAATATTCTTT+AGG | - | chr5_1:7662447-7662466 | None:intergenic | 45.0% | |
| !!! | GGAAGACTCCTTTTGAAGCT+TGG | + | chr5_1:7662520-7662539 | Msa0714850:intron | 45.0% |
| TGCACATCCCAAGCTTCAAA+AGG | - | chr5_1:7662531-7662550 | None:intergenic | 45.0% | |
| AGTTCATGGAGAATGAGCAG+TGG | + | chr5_1:7662550-7662569 | Msa0714850:intron | 45.0% | |
| !! | GTTGATGATCCTCCTGTAAG+AGG | + | chr5_1:7662633-7662652 | Msa0714850:intron | 45.0% |
| CCCAATATCATGCAGGTTCA+AGG | - | chr5_1:7662704-7662723 | None:intergenic | 45.0% | |
| AAAGAGTCATAGGGGTGAAG+TGG | + | chr5_1:7662823-7662842 | Msa0714850:intron | 45.0% | |
| AAGAGTCATAGGGGTGAAGT+GGG | + | chr5_1:7662824-7662843 | Msa0714850:intron | 45.0% | |
| CAAGCATAAAGCCAGGTTAG+TGG | + | chr5_1:7662884-7662903 | Msa0714850:intron | 45.0% | |
| CTATTGCAGCACAAAAGGGA+TGG | + | chr5_1:7662994-7663013 | Msa0714850:intron | 45.0% | |
| TGAAACAAGCTCCAAGAGCA+TGG | + | chr5_1:7663156-7663175 | Msa0714850:intron | 45.0% | |
| GACGAGTACTTAGTGCAGTT+AGG | + | chr5_1:7663191-7663210 | Msa0714850:intron | 45.0% | |
| AGCTTCTCCTTTGGACACAT+AGG | - | chr5_1:7663512-7663531 | None:intergenic | 45.0% | |
| TCCAAAGGAGAAGCTATGCA+AGG | + | chr5_1:7663517-7663536 | Msa0714850:intron | 45.0% | |
| TCCTTGCATAGCTTCTCCTT+TGG | - | chr5_1:7663521-7663540 | None:intergenic | 45.0% | |
| GGATGTCGAAGAAGAACAAG+TGG | + | chr5_1:7663538-7663557 | Msa0714850:intron | 45.0% | |
| AGAGCAAAGGGAAACTACTG+AGG | + | chr5_1:7663979-7663998 | Msa0714850:CDS | 45.0% | |
| ! | GGAAACTACTGAGGTAATGG+TGG | + | chr5_1:7663988-7664007 | Msa0714850:intron | 45.0% |
| ! | CATTCTTTTGGACATCTCGG+AGG | - | chr5_1:7664093-7664112 | None:intergenic | 45.0% |
| CTCCGAGATGTCCAAAAGAA+TGG | + | chr5_1:7664091-7664110 | Msa0714850:CDS | 45.0% | |
| CAAAAGCTCTTCCAATAGGC+AGG | + | chr5_1:7664167-7664186 | Msa0714850:CDS | 45.0% | |
| CTCCTCCTTGTATCAGTAGT+TGG | - | chr5_1:7664224-7664243 | None:intergenic | 45.0% | |
| !! | CCTTGCAAGACTGTTTCTGT+TGG | - | chr5_1:7664485-7664504 | None:intergenic | 45.0% |
| CCAACAGAAACAGTCTTGCA+AGG | + | chr5_1:7664482-7664501 | Msa0714850:intron | 45.0% | |
| TCATAGCATCCTCAGTTAGC+TGG | - | chr5_1:7664577-7664596 | None:intergenic | 45.0% | |
| ! | GCAAGAGAAGAAGGCATATC+TGG | + | chr5_1:7664686-7664705 | Msa0714850:CDS | 45.0% |
| TTCATCTGTAGATGGCGTAG+TGG | - | chr5_1:7664759-7664778 | None:intergenic | 45.0% | |
| CGTCGTTGTCTTCAGGAAGA+GGG | - | chr5_1:7660528-7660547 | None:intergenic | 50.0% | |
| TCGTCGTTGTCTTCAGGAAG+AGG | - | chr5_1:7660529-7660548 | None:intergenic | 50.0% | |
| GTGGAATCGTCGTTGTCTTC+AGG | - | chr5_1:7660535-7660554 | None:intergenic | 50.0% | |
| GAGGCTGATCCTAGATATGC+TGG | + | chr5_1:7660922-7660941 | Msa0714850:CDS | 50.0% | |
| CGCGGCAACAAATGATGAAG+AGG | + | chr5_1:7660954-7660973 | Msa0714850:CDS | 50.0% | |
| ACTTGGTCAATCAGTGCAGC+TGG | - | chr5_1:7661087-7661106 | None:intergenic | 50.0% | |
| TGTCGAAGGAAAAGGAACCG+TGG | + | chr5_1:7661618-7661637 | Msa0714850:intron | 50.0% | |
| GTGGCCATTGAAAGTTGCAC+AGG | + | chr5_1:7661637-7661656 | Msa0714850:intron | 50.0% | |
| TACTGACATGCCTTGCAGCT+TGG | - | chr5_1:7661994-7662013 | None:intergenic | 50.0% | |
| AGCTGCAAGGCATGTCAGTA+TGG | + | chr5_1:7661994-7662013 | Msa0714850:intron | 50.0% | |
| TACCGTTCAAGCAAGCAACC+TGG | + | chr5_1:7662031-7662050 | Msa0714850:intron | 50.0% | |
| CTCCAGGTTGCTTGCTTGAA+CGG | - | chr5_1:7662036-7662055 | None:intergenic | 50.0% | |
| CTGATTCACACAGATCTGGC+TGG | + | chr5_1:7662075-7662094 | Msa0714850:intron | 50.0% | |
| AAGTCCAAGTCAGAGGTTGC+AGG | + | chr5_1:7662186-7662205 | Msa0714850:intron | 50.0% | |
| AGTCCAAGTCAGAGGTTGCA+GGG | + | chr5_1:7662187-7662206 | Msa0714850:intron | 50.0% | |
| !!! | CAGAGGTTGCAGGGGTATTT+TGG | + | chr5_1:7662196-7662215 | Msa0714850:intron | 50.0% |
| ACTATGTTCTGTGAGGAGGC+AGG | + | chr5_1:7662309-7662328 | Msa0714850:intron | 50.0% | |
| CTTCCCACCAAAGCAGTAGA+CGG | + | chr5_1:7662498-7662517 | Msa0714850:intron | 50.0% | |
| TTCCCACCAAAGCAGTAGAC+GGG | + | chr5_1:7662499-7662518 | Msa0714850:intron | 50.0% | |
| TTCCCGTCTACTGCTTTGGT+GGG | - | chr5_1:7662504-7662523 | None:intergenic | 50.0% | |
| AGTCTTCCCGTCTACTGCTT+TGG | - | chr5_1:7662508-7662527 | None:intergenic | 50.0% | |
| AGCTTGGGATGTGCAGTTCA+TGG | + | chr5_1:7662536-7662555 | Msa0714850:intron | 50.0% | |
| TGGAGAATGAGCAGTGGAAC+TGG | + | chr5_1:7662556-7662575 | Msa0714850:intron | 50.0% | |
| TGCATTGCAGCCCTCCATTT+GGG | - | chr5_1:7662741-7662760 | None:intergenic | 50.0% | |
| ATCCTGCTGTACCATGCTCT+TGG | - | chr5_1:7663170-7663189 | None:intergenic | 50.0% | |
| CAACACTGCTGCCAGTAACT+AGG | - | chr5_1:7663304-7663323 | None:intergenic | 50.0% | |
| TCTGCTCAACTTCCATGCCA+AGG | - | chr5_1:7663400-7663419 | None:intergenic | 50.0% | |
| GAGCACTCCTATGTGTCCAA+AGG | + | chr5_1:7663502-7663521 | Msa0714850:intron | 50.0% | |
| AGCCACAGCAGCTGTTAATC+AGG | + | chr5_1:7663919-7663938 | Msa0714850:CDS | 50.0% | |
| CAGCTGTTAATCAGGCCTTG+TGG | + | chr5_1:7663927-7663946 | Msa0714850:CDS | 50.0% | |
| !! | TGAGGTAATGGTGGACAACC+AGG | + | chr5_1:7663997-7664016 | Msa0714850:intron | 50.0% |
| ACTTGGTCAATCAGTGCAGC+TGG | - | chr5_1:7661087-7661106 | None:intergenic | 50.0% | |
| CAGTCTTGCAAGGCTTGAGA+AGG | + | chr5_1:7664492-7664511 | Msa0714850:intron | 50.0% | |
| AGAAGGTTAAAAGGCAGCGG+TGG | + | chr5_1:7664509-7664528 | Msa0714850:intron | 50.0% | |
| !! | GTTTTTGAGCGCGAAGCAGA+TGG | + | chr5_1:7664644-7664663 | Msa0714850:CDS | 50.0% |
| TTGGTCAGGGCAAGAGAAGA+AGG | + | chr5_1:7664677-7664696 | Msa0714850:CDS | 50.0% | |
| GGCAGCTTGTCCATCATCAT+CGG | - | chr5_1:7664738-7664757 | None:intergenic | 50.0% | |
| CGCTCTTTGGCAGCAACAAC+CGG | - | chr5_1:7660670-7660689 | None:intergenic | 55.0% | |
| CGGTTGTTGCTGCCAAAGAG+CGG | + | chr5_1:7660668-7660687 | Msa0714850:CDS | 55.0% | |
| GGTTGTTGCTGCCAAAGAGC+GGG | + | chr5_1:7660669-7660688 | Msa0714850:CDS | 55.0% | |
| CTGCCAAAGAGCGGGTGAAA+CGG | + | chr5_1:7660677-7660696 | Msa0714850:CDS | 55.0% | |
| ! | TGACCTCTGGGAAGCTGTTG+AGG | + | chr5_1:7661496-7661515 | Msa0714850:intron | 55.0% |
| CAGCTTCTCTGTTGCTCTCC+AGG | - | chr5_1:7662052-7662071 | None:intergenic | 55.0% | |
| GTCCAAGTCAGAGGTTGCAG+GGG | + | chr5_1:7662188-7662207 | Msa0714850:intron | 55.0% | |
| TACCCCTGCAACCTCTGACT+TGG | - | chr5_1:7662193-7662212 | None:intergenic | 55.0% | |
| CTTCCCGTCTACTGCTTTGG+TGG | - | chr5_1:7662505-7662524 | None:intergenic | 55.0% | |
| CTGCATTGCAGCCCTCCATT+TGG | - | chr5_1:7662742-7662761 | None:intergenic | 55.0% | |
| CAAATGGAGGGCTGCAATGC+AGG | + | chr5_1:7662740-7662759 | Msa0714850:intron | 55.0% | |
| ! | CTCCAAGAGCATGGTACAGC+AGG | + | chr5_1:7663165-7663184 | Msa0714850:intron | 55.0% |
| GGCCTGATTAACAGCTGCTG+TGG | - | chr5_1:7663924-7663943 | None:intergenic | 55.0% | |
| GAAGGTTCATCTCGCAGCCG+CGG | + | chr5_1:7660496-7660515 | Msa0714850:CDS | 60.0% | |
| !! | CAGGAAGAGGGCGTTTACCG+CGG | - | chr5_1:7660516-7660535 | None:intergenic | 60.0% |
| CCTCCGTTTCACCCGCTCTT+TGG | - | chr5_1:7660683-7660702 | None:intergenic | 60.0% | |
| CCAAAGAGCGGGTGAAACGG+AGG | + | chr5_1:7660680-7660699 | Msa0714850:CDS | 60.0% | |
| CCTCCTCAACAGCTTCCCAG+AGG | - | chr5_1:7661502-7661521 | None:intergenic | 60.0% | |
| ! | CCTCTGGGAAGCTGTTGAGG+AGG | + | chr5_1:7661499-7661518 | Msa0714850:intron | 60.0% |
| ATGGAGGGCTGCAATGCAGG+AGG | + | chr5_1:7662743-7662762 | Msa0714850:intron | 60.0% | |
| TGGAGATGGCAATGGCTGCC+TGG | - | chr5_1:7664018-7664037 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7660496 | 7664820 | 7660496 | ID=Msa0714850;Name=Msa0714850 |
| chr5_1 | mRNA | 7660496 | 7664820 | 7660496 | ID=Msa0714850-mRNA-1;Parent=Msa0714850;Name=Msa0714850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0|0|5|0|372 |
| chr5_1 | exon | 7660496 | 7660742 | 7660496 | ID=Msa0714850-mRNA-1:exon:3220;Parent=Msa0714850-mRNA-1 |
| chr5_1 | exon | 7660845 | 7661060 | 7660845 | ID=Msa0714850-mRNA-1:exon:3221;Parent=Msa0714850-mRNA-1 |
| chr5_1 | exon | 7663825 | 7664000 | 7663825 | ID=Msa0714850-mRNA-1:exon:3222;Parent=Msa0714850-mRNA-1 |
| chr5_1 | exon | 7664019 | 7664188 | 7664019 | ID=Msa0714850-mRNA-1:exon:3223;Parent=Msa0714850-mRNA-1 |
| chr5_1 | exon | 7664514 | 7664820 | 7664514 | ID=Msa0714850-mRNA-1:exon:3224;Parent=Msa0714850-mRNA-1 |
| chr5_1 | CDS | 7660496 | 7660742 | 7660496 | ID=Msa0714850-mRNA-1:cds;Parent=Msa0714850-mRNA-1 |
| chr5_1 | CDS | 7660845 | 7661060 | 7660845 | ID=Msa0714850-mRNA-1:cds;Parent=Msa0714850-mRNA-1 |
| chr5_1 | CDS | 7663825 | 7664000 | 7663825 | ID=Msa0714850-mRNA-1:cds;Parent=Msa0714850-mRNA-1 |
| chr5_1 | CDS | 7664019 | 7664188 | 7664019 | ID=Msa0714850-mRNA-1:cds;Parent=Msa0714850-mRNA-1 |
| chr5_1 | CDS | 7664514 | 7664820 | 7664514 | ID=Msa0714850-mRNA-1:cds;Parent=Msa0714850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
