Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721350 | XP_003613086.1 | 92.771 | 166 | 12 | 0 | 1 | 166 | 62 | 227 | 1.03e-105 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721350 | sp|Q9FVC1|SVP_ARATH | 63.687 | 179 | 52 | 2 | 1 | 166 | 62 | 240 | 1.92e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721350 | G7JXQ9 | 92.771 | 166 | 12 | 0 | 1 | 166 | 62 | 227 | 4.90e-106 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0721350 | Msa0847900 | 0.822108 | 2.825560e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721350 | MtrunA17_Chr5g0412461 | 92.771 | 166 | 12 | 0 | 1 | 166 | 62 | 227 | 9.44e-110 | 311 |
| Msa0721350 | MtrunA17_Chr5g0412271 | 81.437 | 167 | 30 | 1 | 1 | 166 | 62 | 228 | 3.88e-93 | 270 |
| Msa0721350 | MtrunA17_Chr5g0427401 | 46.108 | 167 | 82 | 5 | 1 | 164 | 62 | 223 | 2.85e-33 | 117 |
| Msa0721350 | MtrunA17_Chr4g0049901 | 39.157 | 166 | 83 | 3 | 1 | 164 | 88 | 237 | 2.51e-24 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721350 | AT2G22540.2 | 63.687 | 179 | 52 | 2 | 1 | 166 | 57 | 235 | 1.37e-69 | 211 |
| Msa0721350 | AT2G22540.3 | 63.687 | 179 | 52 | 2 | 1 | 166 | 62 | 240 | 1.95e-69 | 210 |
| Msa0721350 | AT2G22540.1 | 63.687 | 179 | 52 | 2 | 1 | 166 | 62 | 240 | 1.95e-69 | 210 |
| Msa0721350 | AT4G24540.1 | 49.701 | 167 | 69 | 6 | 1 | 163 | 62 | 217 | 3.44e-38 | 130 |
Find 75 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGTAAGTTGACTATTTA+TGG | 0.095568 | 5_1:+17934223 | None:intergenic |
| CTCAGACACCTCACTCAAAT+TGG | 0.183454 | 5_1:-17929142 | Msa0721350:CDS |
| CCCTCATCTGCCTTAATTGA+TGG | 0.212199 | 5_1:+17931249 | None:intergenic |
| TGTAATGACTTCAGGTATTC+TGG | 0.229818 | 5_1:-17928297 | Msa0721350:three_prime_UTR |
| TTGGAGAAGTCTCTTGAAAC+TGG | 0.275036 | 5_1:-17931185 | Msa0721350:CDS |
| ATCCAAAAGAGGATAAATTA+AGG | 0.281250 | 5_1:-17934042 | Msa0721350:intron |
| AAGAAAAGAAACTTAGGTTT+TGG | 0.281619 | 5_1:+17934491 | None:intergenic |
| CTCAGAAAAGCCATCAATTA+AGG | 0.306084 | 5_1:-17931259 | Msa0721350:CDS |
| TGTTGTGGGTGGTGAGGGTT+TGG | 0.314850 | 5_1:+17934423 | None:intergenic |
| TTTGTGGAGGCGTTGGTATT+TGG | 0.332464 | 5_1:+17934461 | None:intergenic |
| TATGTATTTGTAATGACTTC+AGG | 0.343086 | 5_1:-17928305 | Msa0721350:three_prime_UTR |
| TCTGGAAGAATTACAACAAT+TGG | 0.380411 | 5_1:-17931204 | Msa0721350:CDS |
| TTTGGACCTGACACTAATTA+GGG | 0.388500 | 5_1:-17932223 | Msa0721350:five_prime_UTR |
| TCAGACACCTCACTCAAATT+GGG | 0.388618 | 5_1:-17929141 | Msa0721350:CDS |
| AAGAAGAGGATTAATCAAAA+AGG | 0.392982 | 5_1:-17933937 | Msa0721350:five_prime_UTR |
| TAGGTGACGGACATGTTTAA+TGG | 0.393822 | 5_1:-17929276 | Msa0721350:CDS |
| GAAATTAACTAGTGAAGAAA+TGG | 0.398177 | 5_1:+17934360 | None:intergenic |
| TCTTTGAATACTCTAACTTA+AGG | 0.399297 | 5_1:-17933848 | Msa0721350:intron |
| TCCATATGCTGGCTGATAGT+AGG | 0.399710 | 5_1:-17928420 | Msa0721350:exon |
| AGAACCGTCGCTAGATTTGC+AGG | 0.407377 | 5_1:-17932085 | Msa0721350:intron |
| ACCTGCAGGCTTCCATATGC+TGG | 0.416131 | 5_1:-17928431 | Msa0721350:intron |
| ACCTACTATCAGCCAGCATA+TGG | 0.423697 | 5_1:+17928419 | None:intergenic |
| GTGGGTGGTGAGGGTTTGGA+AGG | 0.425658 | 5_1:+17934427 | None:intergenic |
| AATTGTGTTGTGGGTGGTGA+GGG | 0.444309 | 5_1:+17934418 | None:intergenic |
| ATGATAAAGAAAAGAAACTT+AGG | 0.463704 | 5_1:+17934485 | None:intergenic |
| TCAGGGAGAGAAGATTATGA+TGG | 0.463773 | 5_1:-17931061 | Msa0721350:intron |
| ATTCTTCCAGACTCAAACCT+TGG | 0.464341 | 5_1:+17931216 | None:intergenic |
| TAATATAGAAATTGTGTTGT+GGG | 0.468801 | 5_1:+17934409 | None:intergenic |
| GGATCTCCAAGGTTTGAGTC+TGG | 0.471068 | 5_1:-17931222 | Msa0721350:CDS |
| AATTAAGGTAAAGAAAGATA+TGG | 0.481532 | 5_1:-17934027 | Msa0721350:five_prime_UTR |
| AAGTCTCTTGAAACTGGGTT+GGG | 0.490075 | 5_1:-17931179 | Msa0721350:CDS |
| ATGTTTAATGGTAAAAGTCT+TGG | 0.495486 | 5_1:-17929264 | Msa0721350:CDS |
| GAAGTCTCTTGAAACTGGGT+TGG | 0.501534 | 5_1:-17931180 | Msa0721350:CDS |
| GAACTTCCCTAATTAGTGTC+AGG | 0.508441 | 5_1:+17932217 | None:intergenic |
| TGGGTGGTGAGGGTTTGGAA+GGG | 0.512771 | 5_1:+17934428 | None:intergenic |
| GTATTCTGGATGATCTCGTT+CGG | 0.514883 | 5_1:-17928283 | Msa0721350:three_prime_UTR |
| TTTAATGGTAAAAGTCTTGG+AGG | 0.517414 | 5_1:-17929261 | Msa0721350:CDS |
| CGTTGAAGAAGGTCAATCTT+CGG | 0.520606 | 5_1:-17929217 | Msa0721350:CDS |
| ATTGTACTTTGTGGAGGCGT+TGG | 0.524049 | 5_1:+17934454 | None:intergenic |
| AGGTTTGTGCGAGGGTCACA+AGG | 0.532973 | 5_1:-17928400 | Msa0721350:three_prime_UTR |
| ATTAACTAGTGAAGAAATGG+TGG | 0.533811 | 5_1:+17934363 | None:intergenic |
| TGGAAACTCGGTAATTGCCA+AGG | 0.543025 | 5_1:-17928175 | None:intergenic |
| GAAGGGTGAATTGTACTTTG+TGG | 0.544904 | 5_1:+17934445 | None:intergenic |
| TTTGTTTGTTTGGCTTTGTG+AGG | 0.550317 | 5_1:+17934518 | None:intergenic |
| GAGAACGTGGTCGTTGAAGA+AGG | 0.551328 | 5_1:-17929228 | Msa0721350:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.554868 | 5_1:-17931250 | Msa0721350:CDS |
| CCATCAATTAAGGCAGATGA+GGG | 0.559358 | 5_1:-17931249 | Msa0721350:CDS |
| GATCAATGAGCTACAAACAA+AGG | 0.563866 | 5_1:-17931037 | Msa0721350:intron |
| AAATTGTGTTGTGGGTGGTG+AGG | 0.566310 | 5_1:+17934417 | None:intergenic |
| AGACCTTGGTTTCAATTACA+CGG | 0.567331 | 5_1:+17931156 | None:intergenic |
| AATTTCGTAGATGAATATTG+TGG | 0.568034 | 5_1:-17928363 | Msa0721350:three_prime_UTR |
| TTCTAGGTTCTGAAGTGATG+AGG | 0.573667 | 5_1:+17934338 | None:intergenic |
| TGGAGAAGTCTCTTGAAACT+GGG | 0.575456 | 5_1:-17931184 | Msa0721350:CDS |
| ACATATACACATTTACTACA+TGG | 0.579362 | 5_1:+17928327 | None:intergenic |
| CAACTCTACTAGTCCTCCAC+AGG | 0.580687 | 5_1:-17929175 | Msa0721350:CDS |
| CTTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5_1:-17929547 | Msa0721350:intron |
| ATTAAGGCAGATGAGGGGAG+AGG | 0.599804 | 5_1:-17931243 | Msa0721350:CDS |
| TTAATATAGAAATTGTGTTG+TGG | 0.601535 | 5_1:+17934408 | None:intergenic |
| GAGCTCTCATAGTCCTGTGG+AGG | 0.606403 | 5_1:+17929162 | None:intergenic |
| GGGTGAATTGTACTTTGTGG+AGG | 0.615816 | 5_1:+17934448 | None:intergenic |
| TCTGAGCTCTCATAGTCCTG+TGG | 0.617975 | 5_1:+17929159 | None:intergenic |
| GCTGATAGTAGGTTTGTGCG+AGG | 0.627050 | 5_1:-17928409 | Msa0721350:exon |
| CAACTGTTCTAGATTGAGCA+AGG | 0.640451 | 5_1:-17931288 | Msa0721350:CDS |
| CTGATAGTAGGTTTGTGCGA+GGG | 0.642532 | 5_1:-17928408 | Msa0721350:exon |
| GGGCCGTGTAATTGAAACCA+AGG | 0.647098 | 5_1:-17931159 | Msa0721350:intron |
| CAGACACCTCACTCAAATTG+GGG | 0.648977 | 5_1:-17929140 | Msa0721350:intron |
| AGATTGAAAACGCAACGGCG+AGG | 0.667280 | 5_1:-17933980 | Msa0721350:five_prime_UTR |
| AACTAACCCCAATTTGAGTG+AGG | 0.674292 | 5_1:+17929134 | None:intergenic |
| AAAGAAGATTGAAAACGCAA+CGG | 0.680027 | 5_1:-17933985 | Msa0721350:five_prime_UTR |
| ATGAGGGGAGAGGATCTCCA+AGG | 0.680871 | 5_1:-17931233 | Msa0721350:CDS |
| TATAGAAATTGTGTTGTGGG+TGG | 0.680894 | 5_1:+17934412 | None:intergenic |
| CCAACCTGCAAATCTAGCGA+CGG | 0.687238 | 5_1:+17932081 | None:intergenic |
| AGGAGTTGAATATGAGAACG+TGG | 0.710909 | 5_1:-17929241 | Msa0721350:CDS |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5_1:-17931248 | Msa0721350:CDS |
| GGTTTGTGCGAGGGTCACAA+GGG | 0.714354 | 5_1:-17928399 | Msa0721350:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATAATATAA+AGG | - | chr5_1:17929439-17929458 | Msa0721350:intron | 0.0% |
| !! | ATTAATAAATAGTTATTGTT+GGG | - | chr5_1:17929893-17929912 | Msa0721350:intron | 10.0% |
| !! | GAAAACAATAAAATAATTTA+AGG | - | chr5_1:17930169-17930188 | Msa0721350:intron | 10.0% |
| !! | TTAAATAATTACAAAATCTT+TGG | - | chr5_1:17931345-17931364 | Msa0721350:intron | 10.0% |
| !! | AAAAAGAATAGAAATTTAAT+AGG | + | chr5_1:17932188-17932207 | None:intergenic | 10.0% |
| !! | TACTTTATATATACTTAATT+AGG | + | chr5_1:17932224-17932243 | None:intergenic | 10.0% |
| !! | ACACAATATTTATATTTATA+AGG | - | chr5_1:17932273-17932292 | Msa0721350:intron | 10.0% |
| !!! | TATTTTTATTTTTGCATATA+TGG | - | chr5_1:17932554-17932573 | Msa0721350:intron | 10.0% |
| !!! | AATTATCTTCTTTTATTTTT+GGG | + | chr5_1:17933919-17933938 | None:intergenic | 10.0% |
| !!! | AAATTATCTTCTTTTATTTT+TGG | + | chr5_1:17933920-17933939 | None:intergenic | 10.0% |
| !! | GATAATTTATTATTATAATG+TGG | - | chr5_1:17933932-17933951 | Msa0721350:five_prime_UTR | 10.0% |
| !! | AATTTATTTAGCAAAAAAAT+GGG | + | chr5_1:17934008-17934027 | None:intergenic | 10.0% |
| !! | TAATTTATTTAGCAAAAAAA+TGG | + | chr5_1:17934009-17934028 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAGTAATGATTTA+GGG | + | chr5_1:17934243-17934262 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAAGTAATGATTT+AGG | + | chr5_1:17934244-17934263 | None:intergenic | 10.0% |
| !! | ATATATGTAGCAAAAAATAA+AGG | - | chr5_1:17928680-17928699 | Msa0721350:intron | 15.0% |
| !! | TTAGTGAAAATAATAGTAAT+GGG | + | chr5_1:17929025-17929044 | None:intergenic | 15.0% |
| !! | TTTAGTGAAAATAATAGTAA+TGG | + | chr5_1:17929026-17929045 | None:intergenic | 15.0% |
| !! | ATAATATAAAGGTTTATTCT+AGG | - | chr5_1:17929450-17929469 | Msa0721350:intron | 15.0% |
| !! | CATTAATAAATAGTTATTGT+TGG | - | chr5_1:17929892-17929911 | Msa0721350:intron | 15.0% |
| !!! | TTTTAATAATAGTACCTAAT+AGG | + | chr5_1:17929967-17929986 | None:intergenic | 15.0% |
| !! | ATTATTTAAACAACTAATGT+CGG | + | chr5_1:17931334-17931353 | None:intergenic | 15.0% |
| !!! | TGTGTACAATAATTTTTATA+TGG | - | chr5_1:17931383-17931402 | Msa0721350:intron | 15.0% |
| !!! | TATATACTTAATTAGGATTT+TGG | + | chr5_1:17932217-17932236 | None:intergenic | 15.0% |
| !!! | TATAAATATTGTGTGTTTTT+CGG | + | chr5_1:17932267-17932286 | None:intergenic | 15.0% |
| !! | TATGTAAAAATGTAAAATTG+AGG | - | chr5_1:17933959-17933978 | Msa0721350:five_prime_UTR | 15.0% |
| !! | ATGATAAAGAAAAGAAACTT+AGG | + | chr5_1:17928293-17928312 | None:intergenic | 20.0% |
| !! | TAATATAGAAATTGTGTTGT+GGG | + | chr5_1:17928369-17928388 | None:intergenic | 20.0% |
| !! | TTAATATAGAAATTGTGTTG+TGG | + | chr5_1:17928370-17928389 | None:intergenic | 20.0% |
| !!! | ATGGTGGATTTATTTATTTT+TGG | + | chr5_1:17928399-17928418 | None:intergenic | 20.0% |
| !!! | AGCTAATTTTAGTTTTGTTT+AGG | + | chr5_1:17928466-17928485 | None:intergenic | 20.0% |
| !!! | TTTTGTCTCATCTTTTTTTT+AGG | - | chr5_1:17928594-17928613 | Msa0721350:intron | 20.0% |
| !!! | ATTATTGTTTTATCCAAAAG+AGG | - | chr5_1:17928722-17928741 | Msa0721350:intron | 20.0% |
| !! | AATTAAGGTAAAGAAAGATA+TGG | - | chr5_1:17928748-17928767 | Msa0721350:intron | 20.0% |
| !! | CTTGATGTAAAATAGATAAT+GGG | + | chr5_1:17929190-17929209 | None:intergenic | 20.0% |
| !! | TCTTGATGTAAAATAGATAA+TGG | + | chr5_1:17929191-17929210 | None:intergenic | 20.0% |
| !! | AATGAGTGAATGAAAATTAA+AGG | - | chr5_1:17929304-17929323 | Msa0721350:intron | 20.0% |
| !!! | TATTTTATTGAAAAGTAGTG+TGG | + | chr5_1:17929842-17929861 | None:intergenic | 20.0% |
| !! | ATCTATCAAAAAGTCTAAAT+GGG | + | chr5_1:17929920-17929939 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | + | chr5_1:17930206-17930225 | None:intergenic | 20.0% |
| !! | AAAGAAAATCTTGAATAGAT+TGG | - | chr5_1:17930829-17930848 | Msa0721350:intron | 20.0% |
| !! | ACTAAACTATTATTTGATAG+AGG | + | chr5_1:17931066-17931085 | None:intergenic | 20.0% |
| !! | GAAAGATTCCATATTATATA+TGG | - | chr5_1:17931135-17931154 | Msa0721350:intron | 20.0% |
| !!! | AAATAATAAGACCTTTTCAT+AGG | - | chr5_1:17931190-17931209 | Msa0721350:CDS | 20.0% |
| !!! | AATAATAAGACCTTTTCATA+GGG | - | chr5_1:17931191-17931210 | Msa0721350:CDS | 20.0% |
| !!! | TCTGTTAGTATTTTTACTAA+AGG | + | chr5_1:17931295-17931314 | None:intergenic | 20.0% |
| !! | TAATTACAAAATCTTTGGAT+AGG | - | chr5_1:17931350-17931369 | Msa0721350:intron | 20.0% |
| !! | TTAAATTTAAGCATCAAACA+TGG | + | chr5_1:17931446-17931465 | None:intergenic | 20.0% |
| !!! | ATTTTTCTATGTCTAAACAA+CGG | + | chr5_1:17931875-17931894 | None:intergenic | 20.0% |
| !! | AGACATAGAAAAATGTTATT+TGG | - | chr5_1:17931881-17931900 | Msa0721350:intron | 20.0% |
| !! | AAAGTAGAGAAAAAATAATG+TGG | - | chr5_1:17931939-17931958 | Msa0721350:intron | 20.0% |
| !! | TGTGATTGAAACTATATATA+AGG | - | chr5_1:17932069-17932088 | Msa0721350:intron | 20.0% |
| !! | TGAAACTATATATAAGGAAA+AGG | - | chr5_1:17932075-17932094 | Msa0721350:intron | 20.0% |
| !! | TATAAAATCTGGATATAGAA+AGG | + | chr5_1:17932598-17932617 | None:intergenic | 20.0% |
| !!! | ATTTTCACAGCTTTTAAAAT+AGG | - | chr5_1:17932656-17932675 | Msa0721350:intron | 20.0% |
| !!! | ATGTGATGTTATATATGTTT+TGG | + | chr5_1:17932988-17933007 | None:intergenic | 20.0% |
| !!! | TTTTGTCACATATCATTATT+AGG | + | chr5_1:17933364-17933383 | None:intergenic | 20.0% |
| !! | TAAAATCACTTGTATATGTT+AGG | - | chr5_1:17933480-17933499 | Msa0721350:intron | 20.0% |
| !! | AAATGTCACATTATATGTTT+GGG | + | chr5_1:17933830-17933849 | None:intergenic | 20.0% |
| !!! | TCTTTTCACTATTAAAGTTT+TGG | + | chr5_1:17933880-17933899 | None:intergenic | 20.0% |
| !! | TTTAATAGTGAAAAGAAGAA+AGG | - | chr5_1:17933884-17933903 | Msa0721350:five_prime_UTR | 20.0% |
| !!! | TTTGGAAGTTTTTTTTTTTG+AGG | + | chr5_1:17934088-17934107 | None:intergenic | 20.0% |
| !!! | ATGTTTAGTCATTTTTTAGT+GGG | + | chr5_1:17934117-17934136 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATTAACTGTCC+TGG | + | chr5_1:17934573-17934592 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTTTGGAAACT+CGG | - | chr5_1:17934588-17934607 | Msa0721350:five_prime_UTR | 20.0% |
| !! | AAGAAAAGAAACTTAGGTTT+TGG | + | chr5_1:17928287-17928306 | None:intergenic | 25.0% |
| ! | GAAATTAACTAGTGAAGAAA+TGG | + | chr5_1:17928418-17928437 | None:intergenic | 25.0% |
| !!! | AGTTTTGTTTAGGAATTTCT+AGG | + | chr5_1:17928456-17928475 | None:intergenic | 25.0% |
| !! | ATGTGTAAGTTGACTATTTA+TGG | + | chr5_1:17928555-17928574 | None:intergenic | 25.0% |
| ! | ATCCAAAAGAGGATAAATTA+AGG | - | chr5_1:17928733-17928752 | Msa0721350:intron | 25.0% |
| !! | TACCTTAATTTATCCTCTTT+TGG | + | chr5_1:17928738-17928757 | None:intergenic | 25.0% |
| ! | AAGAAGAGGATTAATCAAAA+AGG | - | chr5_1:17928838-17928857 | Msa0721350:intron | 25.0% |
| ! | TCTTTGAATACTCTAACTTA+AGG | - | chr5_1:17928927-17928946 | Msa0721350:intron | 25.0% |
| ! | TTTACATCAAGAGATATAGA+TGG | - | chr5_1:17929199-17929218 | Msa0721350:CDS | 25.0% |
| ! | GAAAAAAAAAAATGATGCCA+TGG | - | chr5_1:17929251-17929270 | Msa0721350:CDS | 25.0% |
| ! | AATATGTGAAAGTAAGTTGT+AGG | + | chr5_1:17929560-17929579 | None:intergenic | 25.0% |
| ! | CATCTATCAAAAAGTCTAAA+TGG | + | chr5_1:17929921-17929940 | None:intergenic | 25.0% |
| !! | TTACATTTGAGTTCTTAAAC+GGG | + | chr5_1:17930021-17930040 | None:intergenic | 25.0% |
| !! | CTTACATTTGAGTTCTTAAA+CGG | + | chr5_1:17930022-17930041 | None:intergenic | 25.0% |
| ! | GTTTAAGAACTCAAATGTAA+GGG | - | chr5_1:17930021-17930040 | Msa0721350:intron | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | - | chr5_1:17930241-17930260 | Msa0721350:intron | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr5_1:17930241-17930260 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr5_1:17930316-17930335 | Msa0721350:intron | 25.0% |
| ! | TCATTTCTGTTTCCTTTATT+AGG | - | chr5_1:17930443-17930462 | Msa0721350:intron | 25.0% |
| !!! | AACATATGATTTGTGGTTTT+AGG | + | chr5_1:17930978-17930997 | None:intergenic | 25.0% |
| ! | ATACTTCATGAGAAAATGTT+GGG | - | chr5_1:17931111-17931130 | Msa0721350:intron | 25.0% |
| ! | CAAGCAAACCATATATAATA+TGG | + | chr5_1:17931146-17931165 | None:intergenic | 25.0% |
| !! | ATAATAAGACCTTTTCATAG+GGG | - | chr5_1:17931192-17931211 | Msa0721350:CDS | 25.0% |
| ! | TGAAACATTTCTCATAGTTT+CGG | - | chr5_1:17931406-17931425 | Msa0721350:intron | 25.0% |
| !! | AAAACATCTTTCGAATTTTC+AGG | - | chr5_1:17931696-17931715 | Msa0721350:intron | 25.0% |
| !! | AAACATCTTTCGAATTTTCA+GGG | - | chr5_1:17931697-17931716 | Msa0721350:intron | 25.0% |
| ! | CCAAGTATATAGTAGATATA+TGG | + | chr5_1:17931913-17931932 | None:intergenic | 25.0% |
| ! | CCATATATCTACTATATACT+TGG | - | chr5_1:17931910-17931929 | Msa0721350:intron | 25.0% |
| ! | GCGACAAATTAAATTTCATA+GGG | - | chr5_1:17932408-17932427 | Msa0721350:intron | 25.0% |
| !! | TCTATATCCAGATTTTATAG+AGG | - | chr5_1:17932599-17932618 | Msa0721350:intron | 25.0% |
| !! | TGTCCTTTGTTATGTTATTT+CGG | + | chr5_1:17932732-17932751 | None:intergenic | 25.0% |
| ! | TAACAAAGGACATTGTATAT+AGG | - | chr5_1:17932740-17932759 | Msa0721350:intron | 25.0% |
| !!! | ATATGTTTTGGTTAGTATGA+TGG | + | chr5_1:17932976-17932995 | None:intergenic | 25.0% |
| ! | AACTAAATACAATTAGTGGT+GGG | + | chr5_1:17933080-17933099 | None:intergenic | 25.0% |
| ! | ACACAACTAAATACAATTAG+TGG | + | chr5_1:17933084-17933103 | None:intergenic | 25.0% |
| ! | CTAATTGTATTTAGTTGTGT+TGG | - | chr5_1:17933084-17933103 | Msa0721350:intron | 25.0% |
| ! | AGAAAAAAAAAGTTTGCATG+AGG | + | chr5_1:17933315-17933334 | None:intergenic | 25.0% |
| ! | ATGTTTAATGGTAAAAGTCT+TGG | - | chr5_1:17933511-17933530 | Msa0721350:intron | 25.0% |
| ! | CAAATGTCACATTATATGTT+TGG | + | chr5_1:17933831-17933850 | None:intergenic | 25.0% |
| ! | CAAACATATAATGTGACATT+TGG | - | chr5_1:17933829-17933848 | Msa0721350:intron | 25.0% |
| !!! | TTTTTTAGTGGGTGAAAATT+TGG | + | chr5_1:17934106-17934125 | None:intergenic | 25.0% |
| !!! | CATGTTTAGTCATTTTTTAG+TGG | + | chr5_1:17934118-17934137 | None:intergenic | 25.0% |
| ! | AATTTCGTAGATGAATATTG+TGG | - | chr5_1:17934412-17934431 | Msa0721350:five_prime_UTR | 25.0% |
| ! | ACATATACACATTTACTACA+TGG | + | chr5_1:17934451-17934470 | None:intergenic | 25.0% |
| ! | TATGTATTTGTAATGACTTC+AGG | - | chr5_1:17934470-17934489 | Msa0721350:five_prime_UTR | 25.0% |
| !!! | TTTTGGAGCTTTTGTTTGTT+TGG | + | chr5_1:17928270-17928289 | None:intergenic | 30.0% |
| ATTAACTAGTGAAGAAATGG+TGG | + | chr5_1:17928415-17928434 | None:intergenic | 30.0% | |
| !!! | GTCTCATCTTTTTTTTAGGT+TGG | - | chr5_1:17928598-17928617 | Msa0721350:intron | 30.0% |
| AAAGAAGATTGAAAACGCAA+CGG | - | chr5_1:17928790-17928809 | Msa0721350:intron | 30.0% | |
| !!! | ACTTTTTCAAAGAGAAGAAG+AGG | - | chr5_1:17928824-17928843 | Msa0721350:intron | 30.0% |
| ! | TCATCATTTTCTCTTCTACT+GGG | - | chr5_1:17928900-17928919 | Msa0721350:intron | 30.0% |
| AATCAACATTCAACACAGTT+TGG | + | chr5_1:17929058-17929077 | None:intergenic | 30.0% | |
| CATTTCCTAGATACATTGAA+GGG | + | chr5_1:17929156-17929175 | None:intergenic | 30.0% | |
| TCATTTCCTAGATACATTGA+AGG | + | chr5_1:17929157-17929176 | None:intergenic | 30.0% | |
| TACACCAGTCTATTATTCTT+TGG | - | chr5_1:17929340-17929359 | Msa0721350:intron | 30.0% | |
| TCTACCAAAGAATAATAGAC+TGG | + | chr5_1:17929347-17929366 | None:intergenic | 30.0% | |
| GGTCTTTACCATATAAGATT+CGG | - | chr5_1:17929726-17929745 | Msa0721350:intron | 30.0% | |
| !! | ATTAGGTACCGAATCTTATA+TGG | + | chr5_1:17929737-17929756 | None:intergenic | 30.0% |
| ! | TATAAGATTCGGTACCTAAT+AGG | - | chr5_1:17929737-17929756 | Msa0721350:intron | 30.0% |
| !!! | AATTTTTTTTCCCACATTGG+AGG | + | chr5_1:17929765-17929784 | None:intergenic | 30.0% |
| TCCAATGTGGGAAAAAAAAT+TGG | - | chr5_1:17929764-17929783 | Msa0721350:intron | 30.0% | |
| CCAATGTGGGAAAAAAAATT+GGG | - | chr5_1:17929765-17929784 | Msa0721350:intron | 30.0% | |
| CAATGTGGGAAAAAAAATTG+GGG | - | chr5_1:17929766-17929785 | Msa0721350:intron | 30.0% | |
| AATGTGGGAAAAAAAATTGG+GGG | - | chr5_1:17929767-17929786 | Msa0721350:intron | 30.0% | |
| AAAAAAATGATGTGTCCATG+TGG | - | chr5_1:17929993-17930012 | Msa0721350:intron | 30.0% | |
| AAAAAATGATGTGTCCATGT+GGG | - | chr5_1:17929994-17930013 | Msa0721350:intron | 30.0% | |
| CGTTTAAGAACTCAAATGTA+AGG | - | chr5_1:17930020-17930039 | Msa0721350:intron | 30.0% | |
| CTTAAGTCTGTTCTGATTAA+GGG | - | chr5_1:17930086-17930105 | Msa0721350:intron | 30.0% | |
| ATCACTGTAAAGCCTAATAA+AGG | + | chr5_1:17930458-17930477 | None:intergenic | 30.0% | |
| !! | TATTTTTGCAATGAAGCATG+AGG | - | chr5_1:17930617-17930636 | Msa0721350:intron | 30.0% |
| ! | ATTTTTGCAATGAAGCATGA+GGG | - | chr5_1:17930618-17930637 | Msa0721350:intron | 30.0% |
| ! | TGAGTCAAGTTATCTTTTGT+AGG | + | chr5_1:17930903-17930922 | None:intergenic | 30.0% |
| AAGCTAACTGAGTTTCTATT+CGG | + | chr5_1:17930926-17930945 | None:intergenic | 30.0% | |
| CTCGAAAAACATATGATTTG+TGG | + | chr5_1:17930985-17931004 | None:intergenic | 30.0% | |
| !!! | TTTTTCGAGTATCCTATGTA+TGG | - | chr5_1:17930996-17931015 | Msa0721350:intron | 30.0% |
| GATACTTCATGAGAAAATGT+TGG | - | chr5_1:17931110-17931129 | Msa0721350:intron | 30.0% | |
| ATCTTATATCCCCTATGAAA+AGG | + | chr5_1:17931204-17931223 | None:intergenic | 30.0% | |
| TAGGGGATATAAGATTGATT+TGG | - | chr5_1:17931209-17931228 | Msa0721350:CDS | 30.0% | |
| !! | TATAAGATTGATTTGGTGGT+TGG | - | chr5_1:17931216-17931235 | Msa0721350:CDS | 30.0% |
| !! | ATAAGATTGATTTGGTGGTT+GGG | - | chr5_1:17931217-17931236 | Msa0721350:CDS | 30.0% |
| TTACAAAATCTTTGGATAGG+AGG | - | chr5_1:17931353-17931372 | Msa0721350:intron | 30.0% | |
| TCTGGAAGAATTACAACAAT+TGG | - | chr5_1:17931571-17931590 | Msa0721350:intron | 30.0% | |
| TAATGATGTGATGAAAAGTG+AGG | - | chr5_1:17931967-17931986 | Msa0721350:intron | 30.0% | |
| GTATGTGTATGCATATATGT+AGG | + | chr5_1:17932121-17932140 | None:intergenic | 30.0% | |
| GGGAATCACATAAAGTATAA+AGG | + | chr5_1:17932364-17932383 | None:intergenic | 30.0% | |
| AATTACCACACAAAACTCTT+GGG | + | chr5_1:17932384-17932403 | None:intergenic | 30.0% | |
| AAATTACCACACAAAACTCT+TGG | + | chr5_1:17932385-17932404 | None:intergenic | 30.0% | |
| !! | AGAGTTTTGTGTGGTAATTT+TGG | - | chr5_1:17932385-17932404 | Msa0721350:intron | 30.0% |
| !! | GAGTTTTGTGTGGTAATTTT+GGG | - | chr5_1:17932386-17932405 | Msa0721350:intron | 30.0% |
| GGCGACAAATTAAATTTCAT+AGG | - | chr5_1:17932407-17932426 | Msa0721350:intron | 30.0% | |
| CAAATTCGTTGTAACAATCT+AGG | + | chr5_1:17932506-17932525 | None:intergenic | 30.0% | |
| ! | TGTTACAACGAATTTGTTCA+TGG | - | chr5_1:17932510-17932529 | Msa0721350:intron | 30.0% |
| ! | TTTGTTCATGGAGAGAATTT+TGG | - | chr5_1:17932522-17932541 | Msa0721350:intron | 30.0% |
| TCAATGTCCTCTATAAAATC+TGG | + | chr5_1:17932609-17932628 | None:intergenic | 30.0% | |
| AGACCGAAATAACATAACAA+AGG | - | chr5_1:17932726-17932745 | Msa0721350:intron | 30.0% | |
| !!! | ATGTTTGGAAGTTGTTTTTG+AGG | + | chr5_1:17932914-17932933 | None:intergenic | 30.0% |
| TGTTTATTTGGATTCAGTTG+TGG | + | chr5_1:17933023-17933042 | None:intergenic | 30.0% | |
| ! | TGTTGGAATATGTGTTATTC+GGG | + | chr5_1:17933046-17933065 | None:intergenic | 30.0% |
| ! | GTGTTGGAATATGTGTTATT+CGG | + | chr5_1:17933047-17933066 | None:intergenic | 30.0% |
| CAACTAAATACAATTAGTGG+TGG | + | chr5_1:17933081-17933100 | None:intergenic | 30.0% | |
| !!! | ATCATACATGTCGTTTTAGT+CGG | + | chr5_1:17933264-17933283 | None:intergenic | 30.0% |
| TTTAATGGTAAAAGTCTTGG+AGG | - | chr5_1:17933514-17933533 | Msa0721350:intron | 30.0% | |
| CAATGACACATTGAATGAAA+TGG | + | chr5_1:17933691-17933710 | None:intergenic | 30.0% | |
| !! | TTTTTAGTCATGTAGCTTAG+TGG | - | chr5_1:17933725-17933744 | Msa0721350:intron | 30.0% |
| TGAACTCTAGACTTTACATA+TGG | - | chr5_1:17933793-17933812 | Msa0721350:intron | 30.0% | |
| ! | GATTTAGGGTAAGAAATAAG+AGG | + | chr5_1:17934229-17934248 | None:intergenic | 30.0% |
| ! | ACTCTTTTCTCTCTCTTCAT+TGG | - | chr5_1:17928213-17928232 | Msa0721350:three_prime_UTR | 35.0% |
| !! | TTTGTTTGTTTGGCTTTGTG+AGG | + | chr5_1:17928260-17928279 | None:intergenic | 35.0% |
| TATAGAAATTGTGTTGTGGG+TGG | + | chr5_1:17928366-17928385 | None:intergenic | 35.0% | |
| TCTCTCTTTCAATTATACGC+TGG | - | chr5_1:17928628-17928647 | Msa0721350:intron | 35.0% | |
| ! | CTCATCATTTTCTCTTCTAC+TGG | - | chr5_1:17928899-17928918 | Msa0721350:intron | 35.0% |
| CTCTCTCTAACTCTAACTTA+AGG | - | chr5_1:17928959-17928978 | Msa0721350:intron | 35.0% | |
| ATACTCCCTTCAATGTATCT+AGG | - | chr5_1:17929148-17929167 | Msa0721350:CDS | 35.0% | |
| GGTAGACTATCATTATCTGA+CGG | - | chr5_1:17929361-17929380 | Msa0721350:intron | 35.0% | |
| ! | GGAAAAAGACTTTGGTAATC+TGG | + | chr5_1:17929394-17929413 | None:intergenic | 35.0% |
| TTCTTAGGGGAAAAAGACTT+TGG | + | chr5_1:17929402-17929421 | None:intergenic | 35.0% | |
| ! | TTTTTCCCCTAAGAATCTGA+GGG | - | chr5_1:17929407-17929426 | Msa0721350:intron | 35.0% |
| !! | GTTTATAAGAGCATCCACAT+TGG | - | chr5_1:17929700-17929719 | Msa0721350:intron | 35.0% |
| !!! | CCCAATTTTTTTTCCCACAT+TGG | + | chr5_1:17929768-17929787 | None:intergenic | 35.0% |
| ATAGATGATCTCCATTGAAG+TGG | - | chr5_1:17929934-17929953 | Msa0721350:intron | 35.0% | |
| AAATGTAAGGGTCTCAATTG+TGG | - | chr5_1:17930033-17930052 | Msa0721350:intron | 35.0% | |
| GCTTAAGTCTGTTCTGATTA+AGG | - | chr5_1:17930085-17930104 | Msa0721350:intron | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | + | chr5_1:17930202-17930221 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | + | chr5_1:17930203-17930222 | None:intergenic | 35.0% | |
| AAGTGTGTTAATGTGTGTCA+GGG | + | chr5_1:17930370-17930389 | None:intergenic | 35.0% | |
| AAAGTGTGTTAATGTGTGTC+AGG | + | chr5_1:17930371-17930390 | None:intergenic | 35.0% | |
| !!! | GCATTGTTCAGACCATTTTT+TGG | - | chr5_1:17930534-17930553 | Msa0721350:intron | 35.0% |
| TTAGTGTCAGGTCCAAAAAA+TGG | + | chr5_1:17930549-17930568 | None:intergenic | 35.0% | |
| ! | TTTTGGACCTGACACTAATT+AGG | - | chr5_1:17930551-17930570 | Msa0721350:intron | 35.0% |
| TTTGGACCTGACACTAATTA+GGG | - | chr5_1:17930552-17930571 | Msa0721350:intron | 35.0% | |
| TTGAATCACTTATGTGCTTG+TGG | - | chr5_1:17930737-17930756 | Msa0721350:intron | 35.0% | |
| ACTAACAGTTGTCCATACAT+AGG | + | chr5_1:17931011-17931030 | None:intergenic | 35.0% | |
| TATGTATGGACAACTGTTAG+TGG | - | chr5_1:17931010-17931029 | Msa0721350:intron | 35.0% | |
| ATGTATGGACAACTGTTAGT+GGG | - | chr5_1:17931011-17931030 | Msa0721350:intron | 35.0% | |
| !! | TATATGGTTTGCTTGCGTTA+AGG | - | chr5_1:17931151-17931170 | Msa0721350:intron | 35.0% |
| !! | GGGATATAAGATTGATTTGG+TGG | - | chr5_1:17931212-17931231 | Msa0721350:CDS | 35.0% |
| !! | TAAGATTGATTTGGTGGTTG+GGG | - | chr5_1:17931218-17931237 | Msa0721350:CDS | 35.0% |
| AACAAGTGGAGTGATAAAGT+TGG | - | chr5_1:17931251-17931270 | Msa0721350:CDS | 35.0% | |
| CTCAGAAAAGCCATCAATTA+AGG | - | chr5_1:17931516-17931535 | Msa0721350:intron | 35.0% | |
| AGACCTTGGTTTCAATTACA+CGG | + | chr5_1:17931622-17931641 | None:intergenic | 35.0% | |
| GTAGATAGAATTGAAGACCT+TGG | + | chr5_1:17931636-17931655 | None:intergenic | 35.0% | |
| GATCAATGAGCTACAAACAA+AGG | - | chr5_1:17931738-17931757 | Msa0721350:intron | 35.0% | |
| TTTCTATGTCTAAACAACGG+TGG | + | chr5_1:17931872-17931891 | None:intergenic | 35.0% | |
| TGCATACACATACACAATCT+TGG | - | chr5_1:17932128-17932147 | Msa0721350:CDS | 35.0% | |
| !! | AGTATCCGAGTCTTATTTGA+AGG | - | chr5_1:17932240-17932259 | Msa0721350:intron | 35.0% |
| !! | ATTGGTGTTTTTGATGTACG+AGG | + | chr5_1:17932792-17932811 | None:intergenic | 35.0% |
| !! | TTTGGATTTGTTTTCGGTGT+TGG | + | chr5_1:17932831-17932850 | None:intergenic | 35.0% |
| !! | TGGAGGTTTGGATTTGTTTT+CGG | + | chr5_1:17932837-17932856 | None:intergenic | 35.0% |
| !!! | AGTTGTTTTTGAGGTCATTC+AGG | + | chr5_1:17932905-17932924 | None:intergenic | 35.0% |
| ! | TAGTATGATGGTCTTTTGCA+GGG | + | chr5_1:17932964-17932983 | None:intergenic | 35.0% |
| ! | TTAGTATGATGGTCTTTTGC+AGG | + | chr5_1:17932965-17932984 | None:intergenic | 35.0% |
| GATTCAGTTGTGGAAATTCA+AGG | + | chr5_1:17933013-17933032 | None:intergenic | 35.0% | |
| ! | GTGTTATTCGGGTGTTTATT+TGG | + | chr5_1:17933035-17933054 | None:intergenic | 35.0% |
| CACATATTCCAACACTCATT+CGG | - | chr5_1:17933052-17933071 | Msa0721350:intron | 35.0% | |
| CACTTGTATATGTTAGGTGA+CGG | - | chr5_1:17933486-17933505 | Msa0721350:intron | 35.0% | |
| !! | ACCCTTTGAGATGAATTAGT+AGG | - | chr5_1:17933758-17933777 | Msa0721350:intron | 35.0% |
| CCCTACTAATTCATCTCAAA+GGG | + | chr5_1:17933762-17933781 | None:intergenic | 35.0% | |
| !! | CCCTTTGAGATGAATTAGTA+GGG | - | chr5_1:17933759-17933778 | Msa0721350:intron | 35.0% |
| TCCCTACTAATTCATCTCAA+AGG | + | chr5_1:17933763-17933782 | None:intergenic | 35.0% | |
| CTAGACTTTACATATGGCAA+TGG | - | chr5_1:17933799-17933818 | Msa0721350:intron | 35.0% | |
| ! | ATATTTGCTAACTTGTACCC+AGG | - | chr5_1:17934046-17934065 | Msa0721350:intron | 35.0% |
| GAAAAATACACATGCAACCT+GGG | + | chr5_1:17934066-17934085 | None:intergenic | 35.0% | |
| AGAGGTGGAAGGAATAAAAT+TGG | + | chr5_1:17934211-17934230 | None:intergenic | 35.0% | |
| TTAGGGTAAGAAATAAGAGG+TGG | + | chr5_1:17934226-17934245 | None:intergenic | 35.0% | |
| TGTAATGACTTCAGGTATTC+TGG | - | chr5_1:17934478-17934497 | Msa0721350:five_prime_UTR | 35.0% | |
| !!! | AACTCGCTTTTAGTTTAACC+AGG | - | chr5_1:17934552-17934571 | Msa0721350:five_prime_UTR | 35.0% |
| ! | CTTTTCTCTCTCTTCATTGG+TGG | - | chr5_1:17928216-17928235 | Msa0721350:three_prime_UTR | 40.0% |
| GAAGGGTGAATTGTACTTTG+TGG | + | chr5_1:17928333-17928352 | None:intergenic | 40.0% | |
| !! | TTCTAGGTTCTGAAGTGATG+AGG | + | chr5_1:17928440-17928459 | None:intergenic | 40.0% |
| ! | GACTTTGGTAATCTGGAGTT+TGG | + | chr5_1:17929387-17929406 | None:intergenic | 40.0% |
| ! | CTTTTTCCCCTAAGAATCTG+AGG | - | chr5_1:17929406-17929425 | Msa0721350:intron | 40.0% |
| GTTAACCCTCAGATTCTTAG+GGG | + | chr5_1:17929415-17929434 | None:intergenic | 40.0% | |
| CGTTAACCCTCAGATTCTTA+GGG | + | chr5_1:17929416-17929435 | None:intergenic | 40.0% | |
| !! | ATAAGAGCATCCACATTGGT+AGG | - | chr5_1:17929704-17929723 | Msa0721350:intron | 40.0% |
| !! | TAAGAGCATCCACATTGGTA+GGG | - | chr5_1:17929705-17929724 | Msa0721350:intron | 40.0% |
| CTAATAGGTACCTCCAATGT+GGG | - | chr5_1:17929752-17929771 | Msa0721350:intron | 40.0% | |
| TTAAGACCCTCAATCTTACG+TGG | - | chr5_1:17929813-17929832 | Msa0721350:intron | 40.0% | |
| !! | TAGGTACTGAACCACTTCAA+TGG | + | chr5_1:17929948-17929967 | None:intergenic | 40.0% |
| GAAGTGGTTCAGTACCTATT+AGG | - | chr5_1:17929950-17929969 | Msa0721350:intron | 40.0% | |
| AGGCTGTGTAAGCAATTCAT+TGG | + | chr5_1:17930118-17930137 | None:intergenic | 40.0% | |
| ! | TAAGTCTAGGACACCAAACA+CGG | - | chr5_1:17930137-17930156 | Msa0721350:intron | 40.0% |
| ATTTAAGGGAATACACCCTC+CGG | - | chr5_1:17930184-17930203 | Msa0721350:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr5_1:17930319-17930338 | Msa0721350:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr5_1:17930320-17930339 | Msa0721350:intron | 40.0% | |
| GAACTTCCCTAATTAGTGTC+AGG | + | chr5_1:17930561-17930580 | None:intergenic | 40.0% | |
| GAATAGATTGGTACCACTGA+AGG | - | chr5_1:17930841-17930860 | Msa0721350:intron | 40.0% | |
| TTAGCTTCTCAAATGTGCGA+GGG | - | chr5_1:17930939-17930958 | Msa0721350:intron | 40.0% | |
| ! | CAACTGTTCTAGATTGAGCA+AGG | - | chr5_1:17931487-17931506 | Msa0721350:intron | 40.0% |
| CCATCAATTAAGGCAGATGA+GGG | - | chr5_1:17931526-17931545 | Msa0721350:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | - | chr5_1:17931527-17931546 | Msa0721350:intron | 40.0% | |
| ATTCTTCCAGACTCAAACCT+TGG | + | chr5_1:17931562-17931581 | None:intergenic | 40.0% | |
| TTGGAGAAGTCTCTTGAAAC+TGG | - | chr5_1:17931590-17931609 | Msa0721350:intron | 40.0% | |
| TGGAGAAGTCTCTTGAAACT+GGG | - | chr5_1:17931591-17931610 | Msa0721350:intron | 40.0% | |
| AAGTCTCTTGAAACTGGGTT+GGG | - | chr5_1:17931596-17931615 | Msa0721350:intron | 40.0% | |
| TCAGGGAGAGAAGATTATGA+TGG | - | chr5_1:17931714-17931733 | Msa0721350:intron | 40.0% | |
| TCGGTCCTTCAAATAAGACT+CGG | + | chr5_1:17932248-17932267 | None:intergenic | 40.0% | |
| !! | TGATTCCCAAGAGTTTTGTG+TGG | - | chr5_1:17932376-17932395 | Msa0721350:intron | 40.0% |
| GGCTTGAATGAGGTCTTTAT+TGG | + | chr5_1:17932810-17932829 | None:intergenic | 40.0% | |
| GTCATTCAGGATGAAGTTTG+AGG | + | chr5_1:17932892-17932911 | None:intergenic | 40.0% | |
| ! | AGTATGATGGTCTTTTGCAG+GGG | + | chr5_1:17932963-17932982 | None:intergenic | 40.0% |
| !! | TAGGTGACGGACATGTTTAA+TGG | - | chr5_1:17933499-17933518 | Msa0721350:intron | 40.0% |
| AGGAGTTGAATATGAGAACG+TGG | - | chr5_1:17933534-17933553 | Msa0721350:intron | 40.0% | |
| CGTTGAAGAAGGTCAATCTT+CGG | - | chr5_1:17933558-17933577 | Msa0721350:intron | 40.0% | |
| TCAGACACCTCACTCAAATT+GGG | - | chr5_1:17933634-17933653 | Msa0721350:intron | 40.0% | |
| AACTAACCCCAATTTGAGTG+AGG | + | chr5_1:17933644-17933663 | None:intergenic | 40.0% | |
| GGAAAAATACACATGCAACC+TGG | + | chr5_1:17934067-17934086 | None:intergenic | 40.0% | |
| GGTAAGAAATAAGAGGTGGA+AGG | + | chr5_1:17934222-17934241 | None:intergenic | 40.0% | |
| GTATTCTGGATGATCTCGTT+CGG | - | chr5_1:17934492-17934511 | Msa0721350:five_prime_UTR | 40.0% | |
| !! | TTTGTGGAGGCGTTGGTATT+TGG | + | chr5_1:17928317-17928336 | None:intergenic | 45.0% |
| ! | ATTGTACTTTGTGGAGGCGT+TGG | + | chr5_1:17928324-17928343 | None:intergenic | 45.0% |
| GGGTGAATTGTACTTTGTGG+AGG | + | chr5_1:17928330-17928349 | None:intergenic | 45.0% | |
| AATTGTGTTGTGGGTGGTGA+GGG | + | chr5_1:17928360-17928379 | None:intergenic | 45.0% | |
| AAATTGTGTTGTGGGTGGTG+AGG | + | chr5_1:17928361-17928380 | None:intergenic | 45.0% | |
| TGCCATGGAAAGAGAAAGAC+AGG | - | chr5_1:17929266-17929285 | Msa0721350:CDS | 45.0% | |
| GCCATGGAAAGAGAAAGACA+GGG | - | chr5_1:17929267-17929286 | Msa0721350:CDS | 45.0% | |
| TCCCTGTCTTTCTCTTTCCA+TGG | + | chr5_1:17929271-17929290 | None:intergenic | 45.0% | |
| GCGTTAACCCTCAGATTCTT+AGG | + | chr5_1:17929417-17929436 | None:intergenic | 45.0% | |
| TGGTAAAGACCCTACCAATG+TGG | + | chr5_1:17929717-17929736 | None:intergenic | 45.0% | |
| !! | CCACATTGGAGGTACCTATT+AGG | + | chr5_1:17929754-17929773 | None:intergenic | 45.0% |
| CCTAATAGGTACCTCCAATG+TGG | - | chr5_1:17929751-17929770 | Msa0721350:intron | 45.0% | |
| AGGGTCTTAAGTTAGACCCT+GGG | + | chr5_1:17929803-17929822 | None:intergenic | 45.0% | |
| TGGAGTCCACGTAAGATTGA+GGG | + | chr5_1:17929822-17929841 | None:intergenic | 45.0% | |
| TGCTTACACAGCCTAAGTCT+AGG | - | chr5_1:17930124-17930143 | Msa0721350:intron | 45.0% | |
| !! | GTGTTTGGTGTCCTAGACTT+AGG | + | chr5_1:17930138-17930157 | None:intergenic | 45.0% |
| TTTCCAATCAGCTCCGTGTT+TGG | + | chr5_1:17930153-17930172 | None:intergenic | 45.0% | |
| TTAGTCGCTTATACACCCTC+CGG | + | chr5_1:17930338-17930357 | None:intergenic | 45.0% | |
| ! | GTTAGCTTCTCAAATGTGCG+AGG | - | chr5_1:17930938-17930957 | Msa0721350:intron | 45.0% |
| GCCATCAATTAAGGCAGATG+AGG | - | chr5_1:17931525-17931544 | Msa0721350:intron | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | + | chr5_1:17931529-17931548 | None:intergenic | 45.0% | |
| GAAGTCTCTTGAAACTGGGT+TGG | - | chr5_1:17931595-17931614 | Msa0721350:intron | 45.0% | |
| !! | TTTCGGTGTTGGCTTGAATG+AGG | + | chr5_1:17932820-17932839 | None:intergenic | 45.0% |
| TCTGCTGTTATGTGGAGGTT+TGG | + | chr5_1:17932849-17932868 | None:intergenic | 45.0% | |
| TGGTTTCTGCTGTTATGTGG+AGG | + | chr5_1:17932854-17932873 | None:intergenic | 45.0% | |
| GTGTGGTTTCTGCTGTTATG+TGG | + | chr5_1:17932857-17932876 | None:intergenic | 45.0% | |
| AACAGCAGAAACCACACTTG+AGG | - | chr5_1:17932860-17932879 | Msa0721350:intron | 45.0% | |
| ! | TGGTCTTTTGCAGGGGTTTT+TGG | + | chr5_1:17932956-17932975 | None:intergenic | 45.0% |
| ACAACTCTCACTGAACTTGC+AGG | - | chr5_1:17933213-17933232 | Msa0721350:intron | 45.0% | |
| CAACTCTCACTGAACTTGCA+GGG | - | chr5_1:17933214-17933233 | Msa0721350:intron | 45.0% | |
| CTCAGACACCTCACTCAAAT+TGG | - | chr5_1:17933633-17933652 | Msa0721350:intron | 45.0% | |
| CAGACACCTCACTCAAATTG+GGG | - | chr5_1:17933635-17933654 | Msa0721350:intron | 45.0% | |
| CATGTACTATTTGCACCTGC+AGG | - | chr5_1:17934330-17934349 | Msa0721350:five_prime_UTR | 45.0% | |
| ! | TCCATATGCTGGCTGATAGT+AGG | - | chr5_1:17934355-17934374 | Msa0721350:five_prime_UTR | 45.0% |
| ACCTACTATCAGCCAGCATA+TGG | + | chr5_1:17934359-17934378 | None:intergenic | 45.0% | |
| CTGATAGTAGGTTTGTGCGA+GGG | - | chr5_1:17934367-17934386 | Msa0721350:five_prime_UTR | 45.0% | |
| !! | AAAACAATAAAATAATTTAA+GGG | - | chr5_1:17930170-17930189 | Msa0721350:intron | 5.0% |
| !!! | TAATTTTTTTTTTTTTGTTT+TGG | - | chr5_1:17934580-17934599 | Msa0721350:five_prime_UTR | 5.0% |
| AGATTGAAAACGCAACGGCG+AGG | - | chr5_1:17928795-17928814 | Msa0721350:intron | 50.0% | |
| GAGGGTCTTAAGTTAGACCC+TGG | + | chr5_1:17929804-17929823 | None:intergenic | 50.0% | |
| GTGGAGTCCACGTAAGATTG+AGG | + | chr5_1:17929823-17929842 | None:intergenic | 50.0% | |
| GTTCTTAAACGGGTCCCACA+TGG | + | chr5_1:17930011-17930030 | None:intergenic | 50.0% | |
| ACACCAAACACGGAGCTGAT+TGG | - | chr5_1:17930147-17930166 | Msa0721350:intron | 50.0% | |
| AGAACCGTCGCTAGATTTGC+AGG | - | chr5_1:17930690-17930709 | Msa0721350:intron | 50.0% | |
| CCAACCTGCAAATCTAGCGA+CGG | + | chr5_1:17930697-17930716 | None:intergenic | 50.0% | |
| !! | ACCACTGAAGGTATCTGTGC+TGG | - | chr5_1:17930853-17930872 | Msa0721350:intron | 50.0% |
| !! | TGAAGGTATCTGTGCTGGCA+TGG | - | chr5_1:17930858-17930877 | Msa0721350:intron | 50.0% |
| ATTAAGGCAGATGAGGGGAG+AGG | - | chr5_1:17931532-17931551 | Msa0721350:intron | 50.0% | |
| GGATCTCCAAGGTTTGAGTC+TGG | - | chr5_1:17931553-17931572 | Msa0721350:intron | 50.0% | |
| GGGCCGTGTAATTGAAACCA+AGG | - | chr5_1:17931616-17931635 | Msa0721350:intron | 50.0% | |
| ! | TGAGGCTTTTGCCTCAAGTG+TGG | + | chr5_1:17932874-17932893 | None:intergenic | 50.0% |
| GCGGACGATAGATGGATGTT+TGG | + | chr5_1:17932929-17932948 | None:intergenic | 50.0% | |
| !! | TTGGTGTAGCGGACGATAGA+TGG | + | chr5_1:17932937-17932956 | None:intergenic | 50.0% |
| !!! | TGCAGGGGTTTTTGGTGTAG+CGG | + | chr5_1:17932948-17932967 | None:intergenic | 50.0% |
| TCTCACTGAACTTGCAGGGA+AGG | - | chr5_1:17933218-17933237 | Msa0721350:intron | 50.0% | |
| GAGAACGTGGTCGTTGAAGA+AGG | - | chr5_1:17933547-17933566 | Msa0721350:intron | 50.0% | |
| CAACTCTACTAGTCCTCCAC+AGG | - | chr5_1:17933600-17933619 | Msa0721350:intron | 50.0% | |
| TCTGAGCTCTCATAGTCCTG+TGG | + | chr5_1:17933619-17933638 | None:intergenic | 50.0% | |
| GCTGATAGTAGGTTTGTGCG+AGG | - | chr5_1:17934366-17934385 | Msa0721350:five_prime_UTR | 50.0% | |
| TGGGTGGTGAGGGTTTGGAA+GGG | + | chr5_1:17928350-17928369 | None:intergenic | 55.0% | |
| TGTTGTGGGTGGTGAGGGTT+TGG | + | chr5_1:17928355-17928374 | None:intergenic | 55.0% | |
| TTGGGGGTCTCTTAAGACCC+AGG | - | chr5_1:17929783-17929802 | Msa0721350:intron | 55.0% | |
| TGGGGGTCTCTTAAGACCCA+GGG | - | chr5_1:17929784-17929803 | Msa0721350:intron | 55.0% | |
| CCGTCGCTAGATTTGCAGGT+TGG | - | chr5_1:17930694-17930713 | Msa0721350:intron | 55.0% | |
| GCCAGCACAGATACCTTCAG+TGG | + | chr5_1:17930857-17930876 | None:intergenic | 55.0% | |
| GCTTCTCAAATGTGCGAGGG+TGG | - | chr5_1:17930942-17930961 | Msa0721350:intron | 55.0% | |
| ATGAGGGGAGAGGATCTCCA+AGG | - | chr5_1:17931542-17931561 | Msa0721350:intron | 55.0% | |
| GGTGGGATCCGAATGAGTGT+TGG | + | chr5_1:17933063-17933082 | None:intergenic | 55.0% | |
| CTTGCAGGGAAGGCAACTGA+TGG | - | chr5_1:17933228-17933247 | Msa0721350:intron | 55.0% | |
| GAGCTCTCATAGTCCTGTGG+AGG | + | chr5_1:17933616-17933635 | None:intergenic | 55.0% | |
| ACCTGCAGGCTTCCATATGC+TGG | - | chr5_1:17934344-17934363 | Msa0721350:five_prime_UTR | 55.0% | |
| AGGTTTGTGCGAGGGTCACA+AGG | - | chr5_1:17934375-17934394 | Msa0721350:five_prime_UTR | 55.0% | |
| GGTTTGTGCGAGGGTCACAA+GGG | - | chr5_1:17934376-17934395 | Msa0721350:five_prime_UTR | 55.0% | |
| GTGGGTGGTGAGGGTTTGGA+AGG | + | chr5_1:17928351-17928370 | None:intergenic | 60.0% | |
| GCCAGCATATGGAAGCCTGC+AGG | + | chr5_1:17934348-17934367 | None:intergenic | 60.0% | |
| GGGGCGCGAGAGCTAACAAG+TGG | - | chr5_1:17931237-17931256 | Msa0721350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 17928178 | 17934619 | 17928178 | ID=Msa0721350;Name=Msa0721350 |
| chr5_1 | mRNA | 17928178 | 17934619 | 17928178 | ID=Msa0721350-mRNA-1;Parent=Msa0721350;Name=Msa0721350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=734|1|1|1|0.42|0.5|8|249|166 |
| chr5_1 | exon | 17928178 | 17928445 | 17928178 | ID=Msa0721350-mRNA-1:exon:6856;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17929141 | 17929295 | 17929141 | ID=Msa0721350-mRNA-1:exon:6855;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17929521 | 17929562 | 17929521 | ID=Msa0721350-mRNA-1:exon:6854;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17931038 | 17931079 | 17931038 | ID=Msa0721350-mRNA-1:exon:6853;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17931160 | 17931324 | 17931160 | ID=Msa0721350-mRNA-1:exon:6852;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17932086 | 17932252 | 17932086 | ID=Msa0721350-mRNA-1:exon:6851;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17933849 | 17934055 | 17933849 | ID=Msa0721350-mRNA-1:exon:6850;Parent=Msa0721350-mRNA-1 |
| chr5_1 | exon | 17934182 | 17934619 | 17934182 | ID=Msa0721350-mRNA-1:exon:6849;Parent=Msa0721350-mRNA-1 |
| chr5_1 | five_prime_UTR | 17934182 | 17934619 | 17934182 | ID=Msa0721350-mRNA-1:five_prime_utr;Parent=Msa0721350-mRNA-1 |
| chr5_1 | five_prime_UTR | 17933849 | 17934055 | 17933849 | ID=Msa0721350-mRNA-1:five_prime_utr;Parent=Msa0721350-mRNA-1 |
| chr5_1 | five_prime_UTR | 17932164 | 17932252 | 17932164 | ID=Msa0721350-mRNA-1:five_prime_utr;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17932086 | 17932163 | 17932086 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17931160 | 17931324 | 17931160 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17931038 | 17931079 | 17931038 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17929521 | 17929562 | 17929521 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17929141 | 17929295 | 17929141 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | CDS | 17928427 | 17928445 | 17928427 | ID=Msa0721350-mRNA-1:cds;Parent=Msa0721350-mRNA-1 |
| chr5_1 | three_prime_UTR | 17928178 | 17928426 | 17928178 | ID=Msa0721350-mRNA-1:three_prime_utr;Parent=Msa0721350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
