Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722330 | RHN55072.1 | 86.255 | 502 | 61 | 3 | 1 | 501 | 165 | 659 | 0.0 | 891 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722330 | sp|Q8RXF8|MIRO1_ARATH | 62.427 | 511 | 189 | 2 | 1 | 509 | 139 | 648 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722330 | A0A396HP09 | 86.255 | 502 | 61 | 3 | 1 | 501 | 165 | 659 | 0.0 | 891 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0722330 | Msa1374370 | 0.831221 | 1.887085e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722330 | MtrunA17_Chr5g0413741 | 86.255 | 502 | 61 | 3 | 1 | 501 | 165 | 659 | 0.0 | 891 |
| Msa0722330 | MtrunA17_Chr1g0191811 | 72.549 | 510 | 138 | 2 | 1 | 509 | 138 | 646 | 0.0 | 776 |
| Msa0722330 | MtrunA17_Chr5g0417151 | 68.440 | 545 | 127 | 3 | 2 | 509 | 101 | 637 | 0.0 | 726 |
| Msa0722330 | MtrunA17_Chr5g0413461 | 75.921 | 407 | 92 | 1 | 90 | 496 | 4 | 404 | 0.0 | 622 |
| Msa0722330 | MtrunA17_Chr4g0073381 | 60.279 | 501 | 192 | 3 | 3 | 496 | 81 | 581 | 0.0 | 597 |
| Msa0722330 | MtrunA17_Chr7g0259771 | 52.250 | 511 | 241 | 3 | 1 | 509 | 130 | 639 | 0.0 | 565 |
| Msa0722330 | MtrunA17_Chr4g0073061 | 62.617 | 428 | 153 | 1 | 28 | 455 | 190 | 610 | 0.0 | 526 |
| Msa0722330 | MtrunA17_Chr1g0185591 | 50.209 | 478 | 237 | 1 | 1 | 477 | 134 | 611 | 2.08e-173 | 503 |
| Msa0722330 | MtrunA17_Chr5g0413771 | 71.552 | 232 | 66 | 0 | 278 | 509 | 1 | 232 | 1.57e-106 | 317 |
| Msa0722330 | MtrunA17_Chr5g0413781 | 62.617 | 107 | 13 | 1 | 135 | 241 | 1 | 80 | 5.91e-33 | 120 |
| Msa0722330 | MtrunA17_Chr8g0338031 | 33.775 | 151 | 82 | 3 | 10 | 158 | 178 | 312 | 8.44e-16 | 80.1 |
| Msa0722330 | MtrunA17_Chr4g0069591 | 46.988 | 83 | 20 | 3 | 440 | 504 | 2 | 78 | 1.90e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722330 | AT5G27540.1 | 62.427 | 511 | 189 | 2 | 1 | 509 | 139 | 648 | 0.0 | 636 |
| Msa0722330 | AT5G27540.2 | 62.427 | 511 | 189 | 2 | 1 | 509 | 139 | 648 | 0.0 | 636 |
| Msa0722330 | AT3G63150.1 | 52.148 | 512 | 232 | 4 | 3 | 507 | 138 | 643 | 0.0 | 547 |
| Msa0722330 | AT3G05310.1 | 48.936 | 517 | 248 | 7 | 2 | 507 | 137 | 648 | 4.55e-174 | 505 |
| Msa0722330 | AT3G05310.3 | 48.819 | 508 | 244 | 7 | 11 | 507 | 1 | 503 | 1.82e-172 | 496 |
| Msa0722330 | AT3G05310.2 | 50.206 | 486 | 226 | 7 | 11 | 485 | 1 | 481 | 3.88e-169 | 487 |
Find 105 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAAGCCACTGGCTTTC+AGG | 0.148196 | 5_1:-19577521 | Msa0722330:CDS |
| AAAAGAAGCAATTGATTTCT+TGG | 0.178806 | 5_1:-19579761 | Msa0722330:CDS |
| TCTGCAGCCAGGTGAAATTT+TGG | 0.190174 | 5_1:-19580128 | Msa0722330:CDS |
| CATGCTCTCTTCATAGAAAA+AGG | 0.210173 | 5_1:-19580025 | Msa0722330:CDS |
| CAATCTCTTATGCTTGTTTC+AGG | 0.223974 | 5_1:-19576190 | Msa0722330:intron |
| AATACGGCGAAATATATTAT+TGG | 0.263486 | 5_1:+19576297 | None:intergenic |
| CCCCGTTCATTCACGCCTTC+AGG | 0.280059 | 5_1:+19580076 | None:intergenic |
| AGATTGTAAGCTTCAGAATA+TGG | 0.302202 | 5_1:+19578712 | None:intergenic |
| TGAGGCCAAAGACTTCTTAT+TGG | 0.304808 | 5_1:+19578420 | None:intergenic |
| CGCTATACAAGAGGCAACTA+TGG | 0.315553 | 5_1:-19577449 | Msa0722330:intron |
| GTTGGAGTTGCGGTGGTGTT+TGG | 0.351467 | 5_1:-19575479 | Msa0722330:CDS |
| GCTGGCCAATAAGAAGTCTT+TGG | 0.353517 | 5_1:-19578425 | Msa0722330:CDS |
| TTTGAAGCGTGCGCCTGATC+AGG | 0.370706 | 5_1:-19579921 | Msa0722330:intron |
| TCCTGAAGGCGTGAATGAAC+GGG | 0.372474 | 5_1:-19580077 | Msa0722330:CDS |
| TCCATGCATGCTTCAATCTC+AGG | 0.374101 | 5_1:+19580641 | None:intergenic |
| CATGTCTCCTTTATTTGATC+GGG | 0.391465 | 5_1:-19580461 | Msa0722330:CDS |
| TAAACGTTGTTGATATTTCA+AGG | 0.406923 | 5_1:-19578666 | Msa0722330:CDS |
| CCATGTCTCCTTTATTTGAT+CGG | 0.411512 | 5_1:-19580462 | Msa0722330:CDS |
| TGTGACTCCCGATCAAATAA+AGG | 0.435376 | 5_1:+19580454 | None:intergenic |
| GAACGGGGACTTACTTCAAC+AGG | 0.436063 | 5_1:-19580061 | Msa0722330:CDS |
| GATTCTCCACACTAAAGGTT+GGG | 0.439930 | 5_1:+19578988 | None:intergenic |
| CCCGCACACAACGAGGCGTT+AGG | 0.441878 | 5_1:+19580428 | None:intergenic |
| ACAATCTTTGATGAATTTGA+TGG | 0.452038 | 5_1:-19579736 | Msa0722330:CDS |
| TCATCTAACTTCATACTGAT+TGG | 0.454919 | 5_1:+19576322 | None:intergenic |
| TACAGAATAGCGATCCTTGT+TGG | 0.456760 | 5_1:+19578687 | None:intergenic |
| ATATAAGTTGTCACCTGTCA+TGG | 0.463732 | 5_1:+19578377 | None:intergenic |
| GATATTTGAACATCATGAAC+AGG | 0.465480 | 5_1:-19580765 | Msa0722330:five_prime_UTR |
| AGTTGCAGCCAACGATGATC+CGG | 0.466569 | 5_1:-19577485 | Msa0722330:CDS |
| GTATCACATGATATTGTAGT+TGG | 0.467890 | 5_1:-19575497 | Msa0722330:CDS |
| TTACAACCGACCACTATAAC+CGG | 0.471106 | 5_1:+19580734 | None:intergenic |
| GCTGTAGAAAGGAATTCATC+TGG | 0.482246 | 5_1:-19579314 | Msa0722330:CDS |
| TATTGAACTATTGCATTGGA+AGG | 0.488080 | 5_1:-19578821 | Msa0722330:intron |
| TTCCTGAAGGCGTGAATGAA+CGG | 0.489057 | 5_1:-19580078 | Msa0722330:CDS |
| CATTTAATTCAGCATCACTA+AGG | 0.489291 | 5_1:+19580359 | None:intergenic |
| TCAGGGAACTGCTTCATTAG+TGG | 0.491048 | 5_1:+19580659 | None:intergenic |
| TGGTCGGTTGTAAGCTTGAC+CGG | 0.493508 | 5_1:-19580724 | Msa0722330:five_prime_UTR |
| CTTTGTGATCATGACAAAGA+TGG | 0.493708 | 5_1:-19580385 | Msa0722330:CDS |
| TTCAATGCTCCTCTGCAGCC+AGG | 0.494689 | 5_1:-19580139 | Msa0722330:CDS |
| CTGATGTACATTGGTTATCC+TGG | 0.496434 | 5_1:-19578966 | Msa0722330:CDS |
| GTTGGCTGCAACTATAAGAC+AGG | 0.506073 | 5_1:+19577495 | None:intergenic |
| ATCTTTGTCATGATCACAAA+GGG | 0.507037 | 5_1:+19580387 | None:intergenic |
| GCATTATTGAACTATTGCAT+TGG | 0.509172 | 5_1:-19578825 | Msa0722330:CDS |
| CATCAGATTCTCCACACTAA+AGG | 0.510008 | 5_1:+19578983 | None:intergenic |
| AGATTCTCCACACTAAAGGT+TGG | 0.511154 | 5_1:+19578987 | None:intergenic |
| CCCTAACGCCTCGTTGTGTG+CGG | 0.512774 | 5_1:-19580429 | Msa0722330:CDS |
| AGTTGCGGTGGTGTTTGGAT+TGG | 0.514591 | 5_1:-19575474 | Msa0722330:CDS |
| CATACAAGGATGCTGTAGAA+AGG | 0.518890 | 5_1:-19579325 | Msa0722330:CDS |
| CCCTGAGATTGAAGCATGCA+TGG | 0.526234 | 5_1:-19580642 | Msa0722330:CDS |
| TTAGGTCTGATGAGTCTTCA+CGG | 0.531220 | 5_1:-19577582 | Msa0722330:intron |
| CCGATCAAATAAAGGAGACA+TGG | 0.536488 | 5_1:+19580462 | None:intergenic |
| TAACTTCATACTGATTGGCA+TGG | 0.539248 | 5_1:+19576327 | None:intergenic |
| TGATCAGGCGCACGCTTCAA+AGG | 0.540105 | 5_1:+19579923 | None:intergenic |
| AAAATTTCACCTGGCTGCAG+AGG | 0.540349 | 5_1:+19580130 | None:intergenic |
| GCTACAAGGAAGAATGCGTC+AGG | 0.540850 | 5_1:-19575449 | Msa0722330:CDS |
| TAGTCAAGACATGGGAGTAG+AGG | 0.542994 | 5_1:-19576353 | Msa0722330:CDS |
| CTTGTAGGTTAGTCAAGACA+TGG | 0.545008 | 5_1:-19576362 | Msa0722330:intron |
| CCTAACGCCTCGTTGTGTGC+GGG | 0.549771 | 5_1:-19580428 | Msa0722330:CDS |
| GCTGGTCATGGAGAAGCCAC+TGG | 0.555800 | 5_1:-19577529 | Msa0722330:CDS |
| CTGGATTGAAAATTCATACA+AGG | 0.556128 | 5_1:-19579339 | Msa0722330:CDS |
| CATCTGCTATCCGTGTGACT+AGG | 0.558118 | 5_1:-19578935 | Msa0722330:CDS |
| ATAGCGATAGTAAATGAATC+CGG | 0.560787 | 5_1:+19577466 | None:intergenic |
| AAACGTTGTTGATATTTCAA+GGG | 0.562343 | 5_1:-19578665 | Msa0722330:intron |
| AACAATTCTTCAAGTTCATG+CGG | 0.563680 | 5_1:+19579594 | None:intergenic |
| CCGCACACAACGAGGCGTTA+GGG | 0.564872 | 5_1:+19580429 | None:intergenic |
| TCATGAACAGGTCAAAGCTC+CGG | 0.568849 | 5_1:-19580753 | Msa0722330:five_prime_UTR |
| TGTTTGGATTGGCTGCTACA+AGG | 0.570556 | 5_1:-19575463 | Msa0722330:CDS |
| GGTCAAAGCTCCGGTTATAG+TGG | 0.572160 | 5_1:-19580744 | Msa0722330:five_prime_UTR |
| GCTCTGCAGCAGTTACAATA+CGG | 0.572471 | 5_1:+19576281 | None:intergenic |
| AACTTCATACTGATTGGCAT+GGG | 0.573418 | 5_1:+19576328 | None:intergenic |
| GTCACACGGATAGCAGATGA+TGG | 0.574049 | 5_1:+19578939 | None:intergenic |
| TTTGTGATCATGACAAAGAT+GGG | 0.576839 | 5_1:-19580384 | Msa0722330:CDS |
| ATAGCAGATGATGGATCACC+AGG | 0.577638 | 5_1:+19578948 | None:intergenic |
| CTGCTATCCGTGTGACTAGG+AGG | 0.579280 | 5_1:-19578932 | Msa0722330:CDS |
| ATTTACTATCGCTATACAAG+AGG | 0.579989 | 5_1:-19577458 | Msa0722330:CDS |
| AAATGAATCCGGATCATCGT+TGG | 0.584619 | 5_1:+19577477 | None:intergenic |
| TTTACATCCAAAATTTCACC+TGG | 0.585755 | 5_1:+19580121 | None:intergenic |
| GTTGTGTGCGGGCTTTGAAG+CGG | 0.588125 | 5_1:-19580417 | Msa0722330:CDS |
| TAAGCAAATGAGCCTAGAGC+AGG | 0.588187 | 5_1:-19580690 | Msa0722330:exon |
| AAGGGCCTCTCGAGGCAACA+TGG | 0.590801 | 5_1:-19580006 | Msa0722330:CDS |
| ATGGTCCATGTTGCCTCGAG+AGG | 0.593243 | 5_1:+19580001 | None:intergenic |
| CCATGCATGCTTCAATCTCA+GGG | 0.595175 | 5_1:+19580642 | None:intergenic |
| GTGGTGACATTACCTGCTCT+AGG | 0.596460 | 5_1:+19580678 | None:intergenic |
| GTCTGATGAGTCTTCACGGA+AGG | 0.596947 | 5_1:-19577578 | Msa0722330:CDS |
| ATTTAATTCAGCATCACTAA+GGG | 0.600883 | 5_1:+19580360 | None:intergenic |
| TGTGACTAGGAGGCGACACA+TGG | 0.601925 | 5_1:-19578922 | Msa0722330:CDS |
| TCTAAACCCAACCTTTAGTG+TGG | 0.602990 | 5_1:-19578994 | Msa0722330:CDS |
| AAAGCTCCGGTTATAGTGGT+CGG | 0.605595 | 5_1:-19580740 | Msa0722330:five_prime_UTR |
| CCTGAAGGCGTGAATGAACG+GGG | 0.614204 | 5_1:-19580076 | Msa0722330:CDS |
| CGATCAAATAAAGGAGACAT+GGG | 0.614472 | 5_1:+19580463 | None:intergenic |
| GTGCTGAGAGAGATTTCTGA+AGG | 0.621442 | 5_1:-19578463 | Msa0722330:CDS |
| GAGATTGATCTATGAGTCTG+TGG | 0.624090 | 5_1:+19576206 | None:intergenic |
| TCAGGCGCACGCTTCAAAGG+TGG | 0.626241 | 5_1:+19579926 | None:intergenic |
| CATCTTTGTCATGATCACAA+AGG | 0.635725 | 5_1:+19580386 | None:intergenic |
| TATTGTAGTTGGAGTTGCGG+TGG | 0.642530 | 5_1:-19575486 | Msa0722330:CDS |
| TGATATTGTAGTTGGAGTTG+CGG | 0.649762 | 5_1:-19575489 | Msa0722330:CDS |
| CTGAGAGAGATTTCTGAAGG+CGG | 0.661330 | 5_1:-19578460 | Msa0722330:CDS |
| GTGGAGAATCTGATGTACAT+TGG | 0.678662 | 5_1:-19578975 | Msa0722330:CDS |
| TTCAAAGCCCGCACACAACG+AGG | 0.686928 | 5_1:+19580421 | None:intergenic |
| AGCTTACAATCTAACCAACA+AGG | 0.690532 | 5_1:-19578701 | Msa0722330:CDS |
| ACAGGGCACCTGAAAGCCAG+TGG | 0.691708 | 5_1:+19577513 | None:intergenic |
| GTAGAAAGGAATTCATCTGG+AGG | 0.691857 | 5_1:-19579311 | Msa0722330:CDS |
| TTCGTCATATAAGATTGTCG+AGG | 0.704836 | 5_1:-19580615 | Msa0722330:intron |
| TTGTAGGTTAGTCAAGACAT+GGG | 0.705135 | 5_1:-19576361 | Msa0722330:intron |
| TGTGTCGCCTCCTAGTCACA+CGG | 0.710696 | 5_1:+19578925 | None:intergenic |
| TTGGCTGCAACTATAAGACA+GGG | 0.717275 | 5_1:+19577496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTATAATTA+GGG | + | chr5_1:19579448-19579467 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTATAATT+AGG | + | chr5_1:19579449-19579468 | None:intergenic | 0.0% |
| !! | TTATAAAAAAAAAAAAAAAA+AGG | - | chr5_1:19579451-19579470 | Msa0722330:intron | 0.0% |
| !! | TTTCAATTATAAACAAAAAA+AGG | + | chr5_1:19578394-19578413 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTATAATTGAAAT+CGG | - | chr5_1:19578395-19578414 | Msa0722330:CDS | 10.0% |
| !!! | GTTAACTAAATATTAATTTT+AGG | - | chr5_1:19578609-19578628 | Msa0722330:intron | 10.0% |
| !!! | TTATCTTTGATTTTTTTTTT+TGG | - | chr5_1:19579262-19579281 | Msa0722330:intron | 10.0% |
| !! | AAAAGAAAAAGAATTTGATT+TGG | + | chr5_1:19575640-19575659 | None:intergenic | 15.0% |
| !!! | TTTATTCTCAATTGATTTAA+TGG | - | chr5_1:19576405-19576424 | Msa0722330:intron | 15.0% |
| !! | ATACATATAAATAAACTTCA+TGG | + | chr5_1:19576769-19576788 | None:intergenic | 15.0% |
| !! | ACATTGTTTAACAAAATATA+AGG | + | chr5_1:19576994-19577013 | None:intergenic | 15.0% |
| !! | CAAGAAGAAAAAAAAAAAAA+AGG | + | chr5_1:19577899-19577918 | None:intergenic | 15.0% |
| !!! | TTTTTCTTCTTGTTATTATA+AGG | - | chr5_1:19577907-19577926 | Msa0722330:intron | 15.0% |
| !! | AAATTAAACCGATATTAATT+AGG | - | chr5_1:19578308-19578327 | Msa0722330:intron | 15.0% |
| !! | AATTAAACCGATATTAATTA+GGG | - | chr5_1:19578309-19578328 | Msa0722330:intron | 15.0% |
| !! | TGAAACAAGAAAAATTAAAT+TGG | + | chr5_1:19579014-19579033 | None:intergenic | 15.0% |
| !!! | ATGAAAATGACAATTATTTT+CGG | + | chr5_1:19579525-19579544 | None:intergenic | 15.0% |
| !! | AAAAATTTAAACACGTTAAT+AGG | + | chr5_1:19580148-19580167 | None:intergenic | 15.0% |
| !!! | ATTAACGTGTTTAAATTTTT+CGG | - | chr5_1:19580148-19580167 | Msa0722330:CDS | 15.0% |
| !! | AAATGTAGCAAATAAATAAA+TGG | - | chr5_1:19580448-19580467 | Msa0722330:CDS | 15.0% |
| !! | ATTACAAAAAAATATAAGTG+TGG | - | chr5_1:19580662-19580681 | Msa0722330:CDS | 15.0% |
| !!! | AGAATTTGATTTGGAATATA+AGG | + | chr5_1:19575631-19575650 | None:intergenic | 20.0% |
| !!! | TTTTGACATCTAATATAAGA+AGG | + | chr5_1:19575896-19575915 | None:intergenic | 20.0% |
| !! | ATTATACTCGATAATAAACA+AGG | + | chr5_1:19575924-19575943 | None:intergenic | 20.0% |
| !!! | TTCAATTTGTTGACAATATA+TGG | - | chr5_1:19576375-19576394 | Msa0722330:intron | 20.0% |
| !! | ATAATGCTAAAAAATGATTG+GGG | + | chr5_1:19576521-19576540 | None:intergenic | 20.0% |
| !! | GATAATGCTAAAAAATGATT+GGG | + | chr5_1:19576522-19576541 | None:intergenic | 20.0% |
| !! | AGATAATGCTAAAAAATGAT+TGG | + | chr5_1:19576523-19576542 | None:intergenic | 20.0% |
| !! | TTAATTGCAATCTTATATTG+TGG | - | chr5_1:19576661-19576680 | Msa0722330:intron | 20.0% |
| !!! | ACATACATTTTTTTAAGATG+TGG | - | chr5_1:19576698-19576717 | Msa0722330:intron | 20.0% |
| !! | AATGTTTATAGAAAAGTGAT+GGG | - | chr5_1:19577009-19577028 | Msa0722330:intron | 20.0% |
| !! | ACATATAATGTAAAAATCAG+TGG | + | chr5_1:19577167-19577186 | None:intergenic | 20.0% |
| !! | AAAATGAATACATCAAATGA+AGG | + | chr5_1:19577655-19577674 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTAAATACACCAA+AGG | + | chr5_1:19577956-19577975 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATAATAGAGAC+CGG | + | chr5_1:19578155-19578174 | None:intergenic | 20.0% |
| !! | ATAAATTTAACATGGTGAAA+TGG | - | chr5_1:19578874-19578893 | Msa0722330:CDS | 20.0% |
| !!! | CAATCTATTAACTAAGATTT+TGG | - | chr5_1:19579105-19579124 | Msa0722330:intron | 20.0% |
| !! | ATACCTCATTTACAAAATAA+AGG | - | chr5_1:19579138-19579157 | Msa0722330:intron | 20.0% |
| !! | TAGCAATATTTATGTAAATG+AGG | + | chr5_1:19579171-19579190 | None:intergenic | 20.0% |
| !! | GAAAGTTGTCTAATTAATAA+AGG | + | chr5_1:19579347-19579366 | None:intergenic | 20.0% |
| !!! | GTAAAACTAACATGAATTTT+AGG | - | chr5_1:19579603-19579622 | Msa0722330:CDS | 20.0% |
| !! | AACATATATAATCTTTCTCA+TGG | - | chr5_1:19579805-19579824 | Msa0722330:intron | 20.0% |
| !!! | TTTCAGGTATATTATTTTTC+AGG | - | chr5_1:19580035-19580054 | Msa0722330:CDS | 20.0% |
| !! | TTAATATGTACACAGTAAAA+AGG | + | chr5_1:19580087-19580106 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTTATTTCTTCTT+CGG | - | chr5_1:19580376-19580395 | Msa0722330:CDS | 20.0% |
| !! | TAAAAAATTCAAATGATCAG+TGG | + | chr5_1:19580592-19580611 | None:intergenic | 20.0% |
| ! | TAATTAAGTTTCGTTGTTGA+AGG | - | chr5_1:19575682-19575701 | Msa0722330:intron | 25.0% |
| ! | ATTTAATTCAGCATCACTAA+GGG | + | chr5_1:19575852-19575871 | None:intergenic | 25.0% |
| ! | AATCTAACTAAACTATCTAC+AGG | - | chr5_1:19576039-19576058 | Msa0722330:intron | 25.0% |
| !!! | ATATCCAAACTTTTTTAGCA+TGG | + | chr5_1:19576230-19576249 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAGATGAATTG+TGG | - | chr5_1:19576312-19576331 | Msa0722330:CDS | 25.0% |
| ! | TCAACAAATTGAATACAAAC+AGG | + | chr5_1:19576368-19576387 | None:intergenic | 25.0% |
| !! | AAAAGAAGCAATTGATTTCT+TGG | - | chr5_1:19576448-19576467 | Msa0722330:intron | 25.0% |
| ! | ACAATCTTTGATGAATTTGA+TGG | - | chr5_1:19576473-19576492 | Msa0722330:intron | 25.0% |
| !! | TTGCAATTAATCTACCTTTT+CGG | + | chr5_1:19576651-19576670 | None:intergenic | 25.0% |
| !! | TTGTATGAATTTTCAATCCA+GGG | + | chr5_1:19576871-19576890 | None:intergenic | 25.0% |
| ! | TTAACAAAATATAAGGACGA+GGG | + | chr5_1:19576987-19577006 | None:intergenic | 25.0% |
| ! | TTTAACAAAATATAAGGACG+AGG | + | chr5_1:19576988-19577007 | None:intergenic | 25.0% |
| ! | CAATGTTTATAGAAAAGTGA+TGG | - | chr5_1:19577008-19577027 | Msa0722330:intron | 25.0% |
| !!! | GAAAAGTATTTTGAGAATCA+AGG | - | chr5_1:19577061-19577080 | Msa0722330:intron | 25.0% |
| ! | CAAATAAAATGCTATATGCA+CGG | + | chr5_1:19577139-19577158 | None:intergenic | 25.0% |
| !! | ATTATATGTTTTCCAAACAG+TGG | - | chr5_1:19577178-19577197 | Msa0722330:intron | 25.0% |
| !! | TTATATGTTTTCCAAACAGT+GGG | - | chr5_1:19577179-19577198 | Msa0722330:intron | 25.0% |
| ! | TTTCAATAACAATGAGAAGA+TGG | + | chr5_1:19577464-19577483 | None:intergenic | 25.0% |
| ! | GTTATTGAAATTCATAATGC+AGG | - | chr5_1:19577474-19577493 | Msa0722330:CDS | 25.0% |
| ! | TAAACGTTGTTGATATTTCA+AGG | - | chr5_1:19577543-19577562 | Msa0722330:CDS | 25.0% |
| ! | AAACGTTGTTGATATTTCAA+GGG | - | chr5_1:19577544-19577563 | Msa0722330:CDS | 25.0% |
| ! | CATTTATATCTTCCAATTCA+TGG | - | chr5_1:19577686-19577705 | Msa0722330:intron | 25.0% |
| ! | CAAAATGATAAACCATGAAT+TGG | + | chr5_1:19577701-19577720 | None:intergenic | 25.0% |
| ! | CCATAATTTCTATTATATGC+TGG | + | chr5_1:19577872-19577891 | None:intergenic | 25.0% |
| ! | CCAGCATATAATAGAAATTA+TGG | - | chr5_1:19577869-19577888 | Msa0722330:intron | 25.0% |
| !!! | CTTCTTGTTATTATAAGGAT+AGG | - | chr5_1:19577912-19577931 | Msa0722330:intron | 25.0% |
| !!! | AAAGTTATAACTTGTTTTCG+TGG | - | chr5_1:19577974-19577993 | Msa0722330:intron | 25.0% |
| ! | ATGTCATCCCTAATTAATAT+CGG | + | chr5_1:19578319-19578338 | None:intergenic | 25.0% |
| ! | TGTTCAAATTAACTCATCTA+TGG | - | chr5_1:19578492-19578511 | Msa0722330:intron | 25.0% |
| ! | GTTCAAATTAACTCATCTAT+GGG | - | chr5_1:19578493-19578512 | Msa0722330:intron | 25.0% |
| ! | ACTATAATTTCATGTTCATG+TGG | - | chr5_1:19578527-19578546 | Msa0722330:intron | 25.0% |
| !!! | CATTATTTTGTTCATTTGCA+TGG | - | chr5_1:19578790-19578809 | Msa0722330:intron | 25.0% |
| ! | TAACTATCTGTGTATATCTA+TGG | - | chr5_1:19578948-19578967 | Msa0722330:CDS | 25.0% |
| !!! | ATGCCTTTATTTTGTAAATG+AGG | + | chr5_1:19579144-19579163 | None:intergenic | 25.0% |
| !! | TATCTTTGATTTCTTAACTG+TGG | - | chr5_1:19579293-19579312 | Msa0722330:CDS | 25.0% |
| !!! | CTAATTAGCTTTATTAACTG+TGG | - | chr5_1:19579321-19579340 | Msa0722330:CDS | 25.0% |
| ! | AAAAAAGGTTATTGTGATCA+AGG | - | chr5_1:19579466-19579485 | Msa0722330:intron | 25.0% |
| ! | AAAAAGGTTATTGTGATCAA+GGG | - | chr5_1:19579467-19579486 | Msa0722330:intron | 25.0% |
| !! | ACAGTTATCTTTTACATGTA+TGG | - | chr5_1:19579722-19579741 | Msa0722330:intron | 25.0% |
| ! | GAGAAAGATTATATATGTTG+TGG | + | chr5_1:19579804-19579823 | None:intergenic | 25.0% |
| ! | AATACGGCGAAATATATTAT+TGG | + | chr5_1:19579915-19579934 | None:intergenic | 25.0% |
| !!! | TTTTTGGAATGCTTAAATGA+GGG | + | chr5_1:19579955-19579974 | None:intergenic | 25.0% |
| ! | GGTTATAAGTGATAAATCAT+TGG | + | chr5_1:19580233-19580252 | None:intergenic | 25.0% |
| ! | ATTTATCACTTATAACCTTG+AGG | - | chr5_1:19580236-19580255 | Msa0722330:intron | 25.0% |
| !!! | TCTATTTTAGGATATTCAGT+CGG | - | chr5_1:19580566-19580585 | Msa0722330:intron | 25.0% |
| !! | TTTGCTTATTTTCATCTAGC+CGG | + | chr5_1:19575507-19575526 | None:intergenic | 30.0% |
| ! | AGTTTTCTTCTTTGCACAAA+AGG | - | chr5_1:19575712-19575731 | Msa0722330:intron | 30.0% |
| ATCTTTGTCATGATCACAAA+GGG | + | chr5_1:19575825-19575844 | None:intergenic | 30.0% | |
| TTTGTGATCATGACAAAGAT+GGG | - | chr5_1:19575825-19575844 | Msa0722330:intron | 30.0% | |
| CATTTAATTCAGCATCACTA+AGG | + | chr5_1:19575853-19575872 | None:intergenic | 30.0% | |
| ! | TGCTGAATTAAATGCTTTTC+AGG | - | chr5_1:19575859-19575878 | Msa0722330:intron | 30.0% |
| TTTGCACAAATCTTATATGC+AGG | + | chr5_1:19576020-19576039 | None:intergenic | 30.0% | |
| TTTACATCCAAAATTTCACC+TGG | + | chr5_1:19576091-19576110 | None:intergenic | 30.0% | |
| ! | AGGTGAAATTTTGGATGTAA+AGG | - | chr5_1:19576090-19576109 | Msa0722330:intron | 30.0% |
| ! | TGAAATTTTGGATGTAAAGG+AGG | - | chr5_1:19576093-19576112 | Msa0722330:intron | 30.0% |
| ATGCTCTCTTCATAGAAAAA+GGG | - | chr5_1:19576185-19576204 | Msa0722330:intron | 30.0% | |
| ! | AACAATTCTTCAAGTTCATG+CGG | + | chr5_1:19576618-19576637 | None:intergenic | 30.0% |
| ! | TGCAATTAATCTACCTTTTC+GGG | + | chr5_1:19576650-19576669 | None:intergenic | 30.0% |
| !!! | TTATTTTTAATTGCAGTCCC+TGG | - | chr5_1:19576851-19576870 | Msa0722330:intron | 30.0% |
| ! | CTTGTATGAATTTTCAATCC+AGG | + | chr5_1:19576872-19576891 | None:intergenic | 30.0% |
| CTGGATTGAAAATTCATACA+AGG | - | chr5_1:19576870-19576889 | Msa0722330:intron | 30.0% | |
| TCATACATCATGTAAAACTG+AGG | + | chr5_1:19577090-19577109 | None:intergenic | 30.0% | |
| AAATACACATACCAGATGTA+CGG | + | chr5_1:19577113-19577132 | None:intergenic | 30.0% | |
| !! | TATTGCAGTGCTTCATTTTT+GGG | - | chr5_1:19577340-19577359 | Msa0722330:intron | 30.0% |
| GCATTATTGAACTATTGCAT+TGG | - | chr5_1:19577384-19577403 | Msa0722330:intron | 30.0% | |
| TATTGAACTATTGCATTGGA+AGG | - | chr5_1:19577388-19577407 | Msa0722330:intron | 30.0% | |
| !!! | GTATTTTAGTTGTTACCTTG+AGG | - | chr5_1:19577410-19577429 | Msa0722330:intron | 30.0% |
| AGATTGTAAGCTTCAGAATA+TGG | + | chr5_1:19577500-19577519 | None:intergenic | 30.0% | |
| AATACATCAAATGAAGGCTT+TGG | + | chr5_1:19577649-19577668 | None:intergenic | 30.0% | |
| !! | TGGTTTATCATTTTGTTTGC+AGG | - | chr5_1:19577706-19577725 | Msa0722330:intron | 30.0% |
| AACTTCCTAGAACAACTTAT+CGG | - | chr5_1:19578072-19578091 | Msa0722330:intron | 30.0% | |
| AAAAATCAACCCAGAATTTG+TGG | + | chr5_1:19578105-19578124 | None:intergenic | 30.0% | |
| CAATTGTAAATTACTCCAAC+CGG | - | chr5_1:19578133-19578152 | Msa0722330:intron | 30.0% | |
| TAAGTCATAATGTGTTTGCA+TGG | - | chr5_1:19578460-19578479 | Msa0722330:CDS | 30.0% | |
| AAACTCTTGTCAAAAATTGC+TGG | - | chr5_1:19578662-19578681 | Msa0722330:intron | 30.0% | |
| ATAGCGATAGTAAATGAATC+CGG | + | chr5_1:19578746-19578765 | None:intergenic | 30.0% | |
| ATTTACTATCGCTATACAAG+AGG | - | chr5_1:19578751-19578770 | Msa0722330:intron | 30.0% | |
| AAATGGTAAATGAAACGTGT+TGG | - | chr5_1:19578891-19578910 | Msa0722330:CDS | 30.0% | |
| TTATTGCTGATCAGAAAGTT+TGG | + | chr5_1:19578931-19578950 | None:intergenic | 30.0% | |
| ! | TGTTTTATGTCATCTTCGAA+TGG | - | chr5_1:19579076-19579095 | Msa0722330:intron | 30.0% |
| ACTTTCATGTGCATTTCAAT+AGG | - | chr5_1:19579387-19579406 | Msa0722330:intron | 30.0% | |
| ! | AATGTTTTCCCAAAGTAAAC+TGG | - | chr5_1:19579640-19579659 | Msa0722330:intron | 30.0% |
| ! | ATGTTTTCCCAAAGTAAACT+GGG | - | chr5_1:19579641-19579660 | Msa0722330:intron | 30.0% |
| ! | GAAAGGATTGGCAAATATAA+AGG | + | chr5_1:19579667-19579686 | None:intergenic | 30.0% |
| TCATCTAACTTCATACTGAT+TGG | + | chr5_1:19579890-19579909 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAATGCTTAAATG+AGG | + | chr5_1:19579956-19579975 | None:intergenic | 30.0% |
| TTAAGCATTCCAAAAACTGA+AGG | - | chr5_1:19579959-19579978 | Msa0722330:CDS | 30.0% | |
| ! | TTTATTTCTTCTTCGGTAGA+TGG | - | chr5_1:19580383-19580402 | Msa0722330:CDS | 30.0% |
| TTACCAAGTCTCTACAATAT+AGG | - | chr5_1:19580474-19580493 | Msa0722330:CDS | 30.0% | |
| GTATCACATGATATTGTAGT+TGG | - | chr5_1:19580712-19580731 | Msa0722330:five_prime_UTR | 30.0% | |
| TTCGTCATATAAGATTGTCG+AGG | - | chr5_1:19575594-19575613 | Msa0722330:intron | 35.0% | |
| CGATCAAATAAAGGAGACAT+GGG | + | chr5_1:19575749-19575768 | None:intergenic | 35.0% | |
| ! | CCATGTCTCCTTTATTTGAT+CGG | - | chr5_1:19575747-19575766 | Msa0722330:intron | 35.0% |
| ! | CATGTCTCCTTTATTTGATC+GGG | - | chr5_1:19575748-19575767 | Msa0722330:intron | 35.0% |
| CATCTTTGTCATGATCACAA+AGG | + | chr5_1:19575826-19575845 | None:intergenic | 35.0% | |
| CTTTGTGATCATGACAAAGA+TGG | - | chr5_1:19575824-19575843 | Msa0722330:intron | 35.0% | |
| TGTTCACATCATGTTATGGT+AGG | - | chr5_1:19575975-19575994 | Msa0722330:intron | 35.0% | |
| TGTTATGGTAGGTTATGTTG+TGG | - | chr5_1:19575986-19576005 | Msa0722330:intron | 35.0% | |
| ! | GTGCAAAAGAATTTTCCTGA+AGG | - | chr5_1:19576118-19576137 | Msa0722330:intron | 35.0% |
| CATGCTCTCTTCATAGAAAA+AGG | - | chr5_1:19576184-19576203 | Msa0722330:intron | 35.0% | |
| TGGACCATGCTAAAAAAGTT+TGG | - | chr5_1:19576223-19576242 | Msa0722330:CDS | 35.0% | |
| CTCAAAAGAAAAACCTGATC+AGG | + | chr5_1:19576304-19576323 | None:intergenic | 35.0% | |
| ! | GCAATTAATCTACCTTTTCG+GGG | + | chr5_1:19576649-19576668 | None:intergenic | 35.0% |
| TCCTAATTGACATTCAGACT+CGG | + | chr5_1:19576799-19576818 | None:intergenic | 35.0% | |
| TGAATGTCAATTAGGACTCT+TGG | - | chr5_1:19576803-19576822 | Msa0722330:intron | 35.0% | |
| ! | ACTTGATGCATTTTTGTCAG+AGG | - | chr5_1:19576927-19576946 | Msa0722330:intron | 35.0% |
| GGACTAGAGACAAAGATAAA+AGG | + | chr5_1:19576966-19576985 | None:intergenic | 35.0% | |
| ! | GTATTGCAGTGCTTCATTTT+TGG | - | chr5_1:19577339-19577358 | Msa0722330:intron | 35.0% |
| AGCTTACAATCTAACCAACA+AGG | - | chr5_1:19577508-19577527 | Msa0722330:CDS | 35.0% | |
| AAAAACTGCAATGTCACATG+AGG | + | chr5_1:19577810-19577829 | None:intergenic | 35.0% | |
| ATATAAGTTGTCACCTGTCA+TGG | + | chr5_1:19577835-19577854 | None:intergenic | 35.0% | |
| GAAAAACTCCATAGTGCATT+TGG | - | chr5_1:19578046-19578065 | Msa0722330:intron | 35.0% | |
| AAGTTCATCCAAATGCACTA+TGG | + | chr5_1:19578057-19578076 | None:intergenic | 35.0% | |
| TGTTTATAATAGAGACCGGT+TGG | + | chr5_1:19578151-19578170 | None:intergenic | 35.0% | |
| ACATGTTCCATGAGAACAAA+AGG | - | chr5_1:19578276-19578295 | Msa0722330:intron | 35.0% | |
| CATGTTCCATGAGAACAAAA+GGG | - | chr5_1:19578277-19578296 | Msa0722330:intron | 35.0% | |
| ! | CAATAACCCTTTTGTTCTCA+TGG | + | chr5_1:19578286-19578305 | None:intergenic | 35.0% |
| AATTTCATGTTCATGTGGTC+TGG | - | chr5_1:19578532-19578551 | Msa0722330:intron | 35.0% | |
| GGCAACTTATATTAAGTACC+TGG | - | chr5_1:19578561-19578580 | Msa0722330:intron | 35.0% | |
| TTAAGTACCTGGAAACATGT+TGG | - | chr5_1:19578572-19578591 | Msa0722330:intron | 35.0% | |
| AATACAACCAACATGTTTCC+AGG | + | chr5_1:19578582-19578601 | None:intergenic | 35.0% | |
| TTGTCAAAAATTGCTGGTCA+TGG | - | chr5_1:19578668-19578687 | Msa0722330:CDS | 35.0% | |
| TGCTGCACAGAATTATTGTA+TGG | - | chr5_1:19578839-19578858 | Msa0722330:CDS | 35.0% | |
| GCTGCACAGAATTATTGTAT+GGG | - | chr5_1:19578840-19578859 | Msa0722330:CDS | 35.0% | |
| ! | TTTCAAGCAGAAGTGTGAAT+CGG | - | chr5_1:19579230-19579249 | Msa0722330:intron | 35.0% |
| TGAAATGCACATGAAAGTGA+AGG | + | chr5_1:19579385-19579404 | None:intergenic | 35.0% | |
| TTTCGGAATTACATCATCCT+TGG | + | chr5_1:19579508-19579527 | None:intergenic | 35.0% | |
| ATAAAGGCCCAGTTTACTTT+GGG | + | chr5_1:19579651-19579670 | None:intergenic | 35.0% | |
| TATAAAGGCCCAGTTTACTT+TGG | + | chr5_1:19579652-19579671 | None:intergenic | 35.0% | |
| TATGGTTATAGCTGACTGTT+AGG | - | chr5_1:19579740-19579759 | Msa0722330:CDS | 35.0% | |
| ! | TTGTAGGTTAGTCAAGACAT+GGG | - | chr5_1:19579848-19579867 | Msa0722330:intron | 35.0% |
| ! | AACTTCATACTGATTGGCAT+GGG | + | chr5_1:19579884-19579903 | None:intergenic | 35.0% |
| ! | TAACTTCATACTGATTGGCA+TGG | + | chr5_1:19579885-19579904 | None:intergenic | 35.0% |
| ! | GTTTTCCTACCTTCAGTTTT+TGG | + | chr5_1:19579971-19579990 | None:intergenic | 35.0% |
| CAATCTCTTATGCTTGTTTC+AGG | - | chr5_1:19580019-19580038 | Msa0722330:CDS | 35.0% | |
| GAGAAGTAAAGCAAGCTAAA+CGG | + | chr5_1:19580296-19580315 | None:intergenic | 35.0% | |
| GAAAGCGAAACAAAACAACA+TGG | + | chr5_1:19580361-19580380 | None:intergenic | 35.0% | |
| CTAATTCTTCCTCCAGAAAA+CGG | - | chr5_1:19580499-19580518 | Msa0722330:CDS | 35.0% | |
| AATGGCATGAAAAGAGAGAT+GGG | - | chr5_1:19580538-19580557 | Msa0722330:intron | 35.0% | |
| ! | AGATGGGCATTCTCTATTTT+AGG | - | chr5_1:19580554-19580573 | Msa0722330:intron | 35.0% |
| !!! | ACTTTTGACTAGTTCTGCTT+TGG | - | chr5_1:19580616-19580635 | Msa0722330:CDS | 35.0% |
| TGATATTGTAGTTGGAGTTG+CGG | - | chr5_1:19580720-19580739 | Msa0722330:five_prime_UTR | 35.0% | |
| TTACAACCGACCACTATAAC+CGG | + | chr5_1:19575478-19575497 | None:intergenic | 40.0% | |
| CCGATCAAATAAAGGAGACA+TGG | + | chr5_1:19575750-19575769 | None:intergenic | 40.0% | |
| TGTGACTCCCGATCAAATAA+AGG | + | chr5_1:19575758-19575777 | None:intergenic | 40.0% | |
| ACACCTTGTAGCTTGAATAC+AGG | - | chr5_1:19575950-19575969 | Msa0722330:intron | 40.0% | |
| AAGCCTGTATTCAAGCTACA+AGG | + | chr5_1:19575956-19575975 | None:intergenic | 40.0% | |
| ! | GGCTTGTTCACATCATGTTA+TGG | - | chr5_1:19575971-19575990 | Msa0722330:intron | 40.0% |
| ATGGTAGGTTATGTTGTGGT+AGG | - | chr5_1:19575990-19576009 | Msa0722330:intron | 40.0% | |
| CCTAATTGACATTCAGACTC+GGG | + | chr5_1:19576798-19576817 | None:intergenic | 40.0% | |
| CATACAAGGATGCTGTAGAA+AGG | - | chr5_1:19576884-19576903 | Msa0722330:intron | 40.0% | |
| GCTGTAGAAAGGAATTCATC+TGG | - | chr5_1:19576895-19576914 | Msa0722330:intron | 40.0% | |
| GTAGAAAGGAATTCATCTGG+AGG | - | chr5_1:19576898-19576917 | Msa0722330:intron | 40.0% | |
| !! | AGAAAAGTGATGGGCATCTA+TGG | - | chr5_1:19577018-19577037 | Msa0722330:intron | 40.0% |
| ATGATGTATGACCGTACATC+TGG | - | chr5_1:19577099-19577118 | Msa0722330:intron | 40.0% | |
| TCTAAACCCAACCTTTAGTG+TGG | - | chr5_1:19577215-19577234 | Msa0722330:intron | 40.0% | |
| GATTCTCCACACTAAAGGTT+GGG | + | chr5_1:19577224-19577243 | None:intergenic | 40.0% | |
| AGATTCTCCACACTAAAGGT+TGG | + | chr5_1:19577225-19577244 | None:intergenic | 40.0% | |
| CATCAGATTCTCCACACTAA+AGG | + | chr5_1:19577229-19577248 | None:intergenic | 40.0% | |
| GTGGAGAATCTGATGTACAT+TGG | - | chr5_1:19577234-19577253 | Msa0722330:intron | 40.0% | |
| ! | CTGATGTACATTGGTTATCC+TGG | - | chr5_1:19577243-19577262 | Msa0722330:intron | 40.0% |
| !! | CATTTTTGGGCCTATGAAAG+CGG | - | chr5_1:19577353-19577372 | Msa0722330:intron | 40.0% |
| !! | ATTTTTGGGCCTATGAAAGC+GGG | - | chr5_1:19577354-19577373 | Msa0722330:intron | 40.0% |
| AGTTGTTACCTTGAGGTTCT+TGG | - | chr5_1:19577417-19577436 | Msa0722330:intron | 40.0% | |
| TTGTGTTACCAAGAACCTCA+AGG | + | chr5_1:19577428-19577447 | None:intergenic | 40.0% | |
| TACAGAATAGCGATCCTTGT+TGG | + | chr5_1:19577525-19577544 | None:intergenic | 40.0% | |
| TGAGGCCAAAGACTTCTTAT+TGG | + | chr5_1:19577792-19577811 | None:intergenic | 40.0% | |
| ! | TTGCAGTTTTTGTCCATGAC+AGG | - | chr5_1:19577819-19577838 | Msa0722330:intron | 40.0% |
| GGATAGGTTTCTCCATTACT+TGG | - | chr5_1:19577928-19577947 | Msa0722330:intron | 40.0% | |
| TTCCTAGAACAACTTATCGG+CGG | - | chr5_1:19578075-19578094 | Msa0722330:intron | 40.0% | |
| ATTTCCTATACTGCCCTTCA+TGG | - | chr5_1:19578251-19578270 | Msa0722330:intron | 40.0% | |
| TTTCCTATACTGCCCTTCAT+GGG | - | chr5_1:19578252-19578271 | Msa0722330:intron | 40.0% | |
| ATGGAACATGTTCCCATGAA+GGG | + | chr5_1:19578267-19578286 | None:intergenic | 40.0% | |
| TAGGGATGACATCATTCAAC+AGG | - | chr5_1:19578327-19578346 | Msa0722330:intron | 40.0% | |
| AGGGATGACATCATTCAACA+GGG | - | chr5_1:19578328-19578347 | Msa0722330:intron | 40.0% | |
| ! | TGTTCATGTGGTCTGGATTT+TGG | - | chr5_1:19578539-19578558 | Msa0722330:intron | 40.0% |
| ! | GTTCATGTGGTCTGGATTTT+GGG | - | chr5_1:19578540-19578559 | Msa0722330:intron | 40.0% |
| TTAGGTCTGATGAGTCTTCA+CGG | - | chr5_1:19578627-19578646 | Msa0722330:intron | 40.0% | |
| TTGGCTGCAACTATAAGACA+GGG | + | chr5_1:19578716-19578735 | None:intergenic | 40.0% | |
| AAATGAATCCGGATCATCGT+TGG | + | chr5_1:19578735-19578754 | None:intergenic | 40.0% | |
| TTCACACTTCTGCTTGAAAC+AGG | + | chr5_1:19579229-19579248 | None:intergenic | 40.0% | |
| GGTAGATAAAATGCTAGCCA+AGG | - | chr5_1:19579488-19579507 | Msa0722330:intron | 40.0% | |
| TGACTGTTAGGACAACTTGT+TGG | - | chr5_1:19579752-19579771 | Msa0722330:CDS | 40.0% | |
| TGTTCTTTCTCGATGCTTGT+AGG | - | chr5_1:19579832-19579851 | Msa0722330:intron | 40.0% | |
| ! | CTTGTAGGTTAGTCAAGACA+TGG | - | chr5_1:19579847-19579866 | Msa0722330:intron | 40.0% |
| GCATTCCAAAAACTGAAGGT+AGG | - | chr5_1:19579963-19579982 | Msa0722330:CDS | 40.0% | |
| GAGATTGATCTATGAGTCTG+TGG | + | chr5_1:19580006-19580025 | None:intergenic | 40.0% | |
| ! | GTGGTTCATGTGTTCTCTTT+TGG | - | chr5_1:19580185-19580204 | Msa0722330:intron | 40.0% |
| TTCAGTTGCATAACACCTCA+AGG | + | chr5_1:19580254-19580273 | None:intergenic | 40.0% | |
| ! | TACTTCTCCTGTGTTGTTGT+TGG | - | chr5_1:19580308-19580327 | Msa0722330:intron | 40.0% |
| GGTCCTATATTGTAGAGACT+TGG | + | chr5_1:19580480-19580499 | None:intergenic | 40.0% | |
| !! | CGTTTTCTGGAGGAAGAATT+AGG | + | chr5_1:19580501-19580520 | None:intergenic | 40.0% |
| ! | CATCCTTTGAATCCGTTTTC+TGG | + | chr5_1:19580514-19580533 | None:intergenic | 40.0% |
| ! | GAAAACGGATTCAAAGGATG+AGG | - | chr5_1:19580514-19580533 | Msa0722330:intron | 40.0% |
| CAATGGCATGAAAAGAGAGA+TGG | - | chr5_1:19580537-19580556 | Msa0722330:intron | 40.0% | |
| TCATGAACAGGTCAAAGCTC+CGG | - | chr5_1:19575456-19575475 | Msa0722330:CDS | 45.0% | |
| AAAGCTCCGGTTATAGTGGT+CGG | - | chr5_1:19575469-19575488 | Msa0722330:CDS | 45.0% | |
| TAAGCAAATGAGCCTAGAGC+AGG | - | chr5_1:19575519-19575538 | Msa0722330:intron | 45.0% | |
| TCAGGGAACTGCTTCATTAG+TGG | + | chr5_1:19575553-19575572 | None:intergenic | 45.0% | |
| CCATGCATGCTTCAATCTCA+GGG | + | chr5_1:19575570-19575589 | None:intergenic | 45.0% | |
| TCCATGCATGCTTCAATCTC+AGG | + | chr5_1:19575571-19575590 | None:intergenic | 45.0% | |
| AAAATTTCACCTGGCTGCAG+AGG | + | chr5_1:19576082-19576101 | None:intergenic | 45.0% | |
| ! | TCTGCAGCCAGGTGAAATTT+TGG | - | chr5_1:19576081-19576100 | Msa0722330:intron | 45.0% |
| ! | TTCCTGAAGGCGTGAATGAA+CGG | - | chr5_1:19576131-19576150 | Msa0722330:intron | 45.0% |
| ! | CGATCTCTTTTCCTTCTTCC+AGG | - | chr5_1:19576578-19576597 | Msa0722330:intron | 45.0% |
| CAGCATCTTATCCTGGAAGA+AGG | + | chr5_1:19576592-19576611 | None:intergenic | 45.0% | |
| !! | TGTTTTCTAGTGCCCCGAAA+AGG | - | chr5_1:19576634-19576653 | Msa0722330:intron | 45.0% |
| TTGACATTCAGACTCGGGAA+AGG | + | chr5_1:19576793-19576812 | None:intergenic | 45.0% | |
| CCCGAGTCTGAATGTCAATT+AGG | - | chr5_1:19576795-19576814 | Msa0722330:intron | 45.0% | |
| !! | ATAGCAGATGATGGATCACC+AGG | + | chr5_1:19577264-19577283 | None:intergenic | 45.0% |
| ! | GCAGATTTTCCCGCTTTCAT+AGG | + | chr5_1:19577366-19577385 | None:intergenic | 45.0% |
| GTGCTGAGAGAGATTTCTGA+AGG | - | chr5_1:19577746-19577765 | Msa0722330:intron | 45.0% | |
| ! | CTGAGAGAGATTTCTGAAGG+CGG | - | chr5_1:19577749-19577768 | Msa0722330:intron | 45.0% |
| AGGCGGAGTTGAAAAATTGC+TGG | - | chr5_1:19577766-19577785 | Msa0722330:intron | 45.0% | |
| GCTGGCCAATAAGAAGTCTT+TGG | - | chr5_1:19577784-19577803 | Msa0722330:intron | 45.0% | |
| !! | TCTCCATTACTTGGTGCCTT+TGG | - | chr5_1:19577937-19577956 | Msa0722330:intron | 45.0% |
| !! | ACACCAAAGGCACCAAGTAA+TGG | + | chr5_1:19577943-19577962 | None:intergenic | 45.0% |
| TTCCGCCGATAAGTTGTTCT+AGG | + | chr5_1:19578080-19578099 | None:intergenic | 45.0% | |
| CATGGAACATGTTCCCATGA+AGG | + | chr5_1:19578268-19578287 | None:intergenic | 45.0% | |
| GGGATGACATCATTCAACAG+GGG | - | chr5_1:19578329-19578348 | Msa0722330:intron | 45.0% | |
| GTTGGCTGCAACTATAAGAC+AGG | + | chr5_1:19578717-19578736 | None:intergenic | 45.0% | |
| CGCTATACAAGAGGCAACTA+TGG | - | chr5_1:19578760-19578779 | Msa0722330:intron | 45.0% | |
| TCAATAGGTCTTCCTTGCCT+TGG | - | chr5_1:19579402-19579421 | Msa0722330:intron | 45.0% | |
| TGCGAGTCAGTAGAAAGGAT+TGG | + | chr5_1:19579679-19579698 | None:intergenic | 45.0% | |
| TCGTTTGCGAGTCAGTAGAA+AGG | + | chr5_1:19579684-19579703 | None:intergenic | 45.0% | |
| !! | TTCTACTGACTCGCAAACGA+AGG | - | chr5_1:19579684-19579703 | Msa0722330:intron | 45.0% |
| TAGTCAAGACATGGGAGTAG+AGG | - | chr5_1:19579856-19579875 | Msa0722330:intron | 45.0% | |
| GCTCTGCAGCAGTTACAATA+CGG | + | chr5_1:19579931-19579950 | None:intergenic | 45.0% | |
| ! | GAGGTGTTATGCAACTGAAC+TGG | - | chr5_1:19580255-19580274 | Msa0722330:intron | 45.0% |
| !! | GCTAAACGGAAGCACTGATA+GGG | + | chr5_1:19580282-19580301 | None:intergenic | 45.0% |
| !! | AGCTAAACGGAAGCACTGAT+AGG | + | chr5_1:19580283-19580302 | None:intergenic | 45.0% |
| ! | TCTCCTGTGTTGTTGTTGGA+AGG | - | chr5_1:19580312-19580331 | Msa0722330:intron | 45.0% |
| ATGCCTTCCAACAACAACAC+AGG | + | chr5_1:19580318-19580337 | None:intergenic | 45.0% | |
| CTTCTTCGGTAGATGGTTCT+TGG | - | chr5_1:19580390-19580409 | Msa0722330:CDS | 45.0% | |
| ! | CCTTTGAATCCGTTTTCTGG+AGG | + | chr5_1:19580511-19580530 | None:intergenic | 45.0% |
| ! | CCTCCAGAAAACGGATTCAA+AGG | - | chr5_1:19580508-19580527 | Msa0722330:CDS | 45.0% |
| GGATTCAAAGGATGAGGCAA+TGG | - | chr5_1:19580520-19580539 | Msa0722330:intron | 45.0% | |
| TATTGTAGTTGGAGTTGCGG+TGG | - | chr5_1:19580723-19580742 | Msa0722330:five_prime_UTR | 45.0% | |
| !! | TGTTTGGATTGGCTGCTACA+AGG | - | chr5_1:19580746-19580765 | Msa0722330:five_prime_UTR | 45.0% |
| !! | AATAAAATATAAATTTAACA+TGG | - | chr5_1:19578866-19578885 | Msa0722330:CDS | 5.0% |
| !! | TAATTTAAATTAATATTTCT+CGG | + | chr5_1:19580646-19580665 | None:intergenic | 5.0% |
| GGTCAAAGCTCCGGTTATAG+TGG | - | chr5_1:19575465-19575484 | Msa0722330:CDS | 50.0% | |
| TGGTCGGTTGTAAGCTTGAC+CGG | - | chr5_1:19575485-19575504 | Msa0722330:CDS | 50.0% | |
| GTGGTGACATTACCTGCTCT+AGG | + | chr5_1:19575534-19575553 | None:intergenic | 50.0% | |
| CCCTGAGATTGAAGCATGCA+TGG | - | chr5_1:19575567-19575586 | Msa0722330:intron | 50.0% | |
| ! | TCCTGAAGGCGTGAATGAAC+GGG | - | chr5_1:19576132-19576151 | Msa0722330:intron | 50.0% |
| GAACGGGGACTTACTTCAAC+AGG | - | chr5_1:19576148-19576167 | Msa0722330:intron | 50.0% | |
| CATAGAAAAAGGGCCTCTCG+AGG | - | chr5_1:19576195-19576214 | Msa0722330:CDS | 50.0% | |
| TGTCATGAGTGCCCACTGTT+TGG | + | chr5_1:19577193-19577212 | None:intergenic | 50.0% | |
| GTCACACGGATAGCAGATGA+TGG | + | chr5_1:19577273-19577292 | None:intergenic | 50.0% | |
| CATCTGCTATCCGTGTGACT+AGG | - | chr5_1:19577274-19577293 | Msa0722330:intron | 50.0% | |
| GGCGGAAGACCACAAATTCT+GGG | - | chr5_1:19578093-19578112 | Msa0722330:intron | 50.0% | |
| GTTCCCATGAAGGGCAGTAT+AGG | + | chr5_1:19578258-19578277 | None:intergenic | 50.0% | |
| GTCTGATGAGTCTTCACGGA+AGG | - | chr5_1:19578631-19578650 | Msa0722330:intron | 50.0% | |
| AGTTGCAGCCAACGATGATC+CGG | - | chr5_1:19578724-19578743 | Msa0722330:intron | 50.0% | |
| AGGTCTTCCTTGCCTTGGTT+TGG | - | chr5_1:19579407-19579426 | Msa0722330:intron | 50.0% | |
| TAGTGCTCCAAACCAAGGCA+AGG | + | chr5_1:19579417-19579436 | None:intergenic | 50.0% | |
| GGGAATAGTGCTCCAAACCA+AGG | + | chr5_1:19579422-19579441 | None:intergenic | 50.0% | |
| TTCGGTGATGTGATCTGTCG+TGG | - | chr5_1:19580166-19580185 | Msa0722330:intron | 50.0% | |
| AGTTGCGGTGGTGTTTGGAT+TGG | - | chr5_1:19580735-19580754 | Msa0722330:five_prime_UTR | 50.0% | |
| GCTACAAGGAAGAATGCGTC+AGG | - | chr5_1:19580760-19580779 | Msa0722330:five_prime_UTR | 50.0% | |
| TTCAAAGCCCGCACACAACG+AGG | + | chr5_1:19575791-19575810 | None:intergenic | 55.0% | |
| !! | GTTGTGTGCGGGCTTTGAAG+CGG | - | chr5_1:19575792-19575811 | Msa0722330:intron | 55.0% |
| TTCAATGCTCCTCTGCAGCC+AGG | - | chr5_1:19576070-19576089 | Msa0722330:intron | 55.0% | |
| ! | CCTGAAGGCGTGAATGAACG+GGG | - | chr5_1:19576133-19576152 | Msa0722330:intron | 55.0% |
| ATGGTCCATGTTGCCTCGAG+AGG | + | chr5_1:19576211-19576230 | None:intergenic | 55.0% | |
| TGATCAGGCGCACGCTTCAA+AGG | + | chr5_1:19576289-19576308 | None:intergenic | 55.0% | |
| ! | TTTGAAGCGTGCGCCTGATC+AGG | - | chr5_1:19576288-19576307 | Msa0722330:CDS | 55.0% |
| GCGGTTGCAGCATCTTATCC+TGG | + | chr5_1:19576599-19576618 | None:intergenic | 55.0% | |
| CTGCTATCCGTGTGACTAGG+AGG | - | chr5_1:19577277-19577296 | Msa0722330:intron | 55.0% | |
| TGTGTCGCCTCCTAGTCACA+CGG | + | chr5_1:19577287-19577306 | None:intergenic | 55.0% | |
| TGTGACTAGGAGGCGACACA+TGG | - | chr5_1:19577287-19577306 | Msa0722330:intron | 55.0% | |
| CGGCGGAAGACCACAAATTC+TGG | - | chr5_1:19578092-19578111 | Msa0722330:intron | 55.0% | |
| !! | TGGAGAAGCCACTGGCTTTC+AGG | - | chr5_1:19578688-19578707 | Msa0722330:CDS | 55.0% |
| GTTGGAGTTGCGGTGGTGTT+TGG | - | chr5_1:19580730-19580749 | Msa0722330:five_prime_UTR | 55.0% | |
| ! | CCGCACACAACGAGGCGTTA+GGG | + | chr5_1:19575783-19575802 | None:intergenic | 60.0% |
| CCCTAACGCCTCGTTGTGTG+CGG | - | chr5_1:19575780-19575799 | Msa0722330:intron | 60.0% | |
| CCTAACGCCTCGTTGTGTGC+GGG | - | chr5_1:19575781-19575800 | Msa0722330:intron | 60.0% | |
| CCCCGTTCATTCACGCCTTC+AGG | + | chr5_1:19576136-19576155 | None:intergenic | 60.0% | |
| AAGGGCCTCTCGAGGCAACA+TGG | - | chr5_1:19576203-19576222 | Msa0722330:CDS | 60.0% | |
| TCAGGCGCACGCTTCAAAGG+TGG | + | chr5_1:19576286-19576305 | None:intergenic | 60.0% | |
| GCTGGTCATGGAGAAGCCAC+TGG | - | chr5_1:19578680-19578699 | Msa0722330:CDS | 60.0% | |
| ! | ACAGGGCACCTGAAAGCCAG+TGG | + | chr5_1:19578699-19578718 | None:intergenic | 60.0% |
| ! | CCCGCACACAACGAGGCGTT+AGG | + | chr5_1:19575784-19575803 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19575445 | 19580786 | 19575445 | ID=Msa0722330;Name=Msa0722330 |
| chr5_1 | mRNA | 19575445 | 19580786 | 19575445 | ID=Msa0722330-mRNA-1;Parent=Msa0722330;Name=Msa0722330-mRNA-1;_AED=0.09;_eAED=0.12;_QI=81|0.90|0.91|1|1|1|12|0|509 |
| chr5_1 | exon | 19575445 | 19575518 | 19575445 | ID=Msa0722330-mRNA-1:exon:7391;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19576191 | 19576377 | 19576191 | ID=Msa0722330-mRNA-1:exon:7390;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19577450 | 19577600 | 19577450 | ID=Msa0722330-mRNA-1:exon:7389;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19578391 | 19578503 | 19578391 | ID=Msa0722330-mRNA-1:exon:7388;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19578666 | 19578735 | 19578666 | ID=Msa0722330-mRNA-1:exon:7387;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19578822 | 19579033 | 19578822 | ID=Msa0722330-mRNA-1:exon:7386;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19579283 | 19579364 | 19579283 | ID=Msa0722330-mRNA-1:exon:7385;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19579576 | 19579631 | 19579576 | ID=Msa0722330-mRNA-1:exon:7384;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19579729 | 19579797 | 19579729 | ID=Msa0722330-mRNA-1:exon:7383;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19579922 | 19580170 | 19579922 | ID=Msa0722330-mRNA-1:exon:7382;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19580351 | 19580527 | 19580351 | ID=Msa0722330-mRNA-1:exon:7381;Parent=Msa0722330-mRNA-1 |
| chr5_1 | exon | 19580616 | 19580786 | 19580616 | ID=Msa0722330-mRNA-1:exon:7380;Parent=Msa0722330-mRNA-1 |
| chr5_1 | five_prime_UTR | 19580706 | 19580786 | 19580706 | ID=Msa0722330-mRNA-1:five_prime_utr;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19580616 | 19580705 | 19580616 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19580351 | 19580527 | 19580351 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19579922 | 19580170 | 19579922 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19579729 | 19579797 | 19579729 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19579576 | 19579631 | 19579576 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19579283 | 19579364 | 19579283 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19578822 | 19579033 | 19578822 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19578666 | 19578735 | 19578666 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19578391 | 19578503 | 19578391 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19577450 | 19577600 | 19577450 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19576191 | 19576377 | 19576191 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| chr5_1 | CDS | 19575445 | 19575518 | 19575445 | ID=Msa0722330-mRNA-1:cds;Parent=Msa0722330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
