AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726180 MtrunA17_Chr2g0278111 29.915 234 104 5 2 177 54 285 2.21e-27 109
Msa0726180 MtrunA17_Chr5g0411141 29.915 234 104 5 2 177 55 286 2.27e-27 109
Msa0726180 MtrunA17_Chr3g0112231 43.023 86 47 1 92 177 16 99 3.30e-19 84.7
Msa0726180 MtrunA17_Chr1g0206481 48.684 76 37 1 104 179 214 287 3.36e-18 83.6
Msa0726180 MtrunA17_Chr1g0206481 37.234 94 59 0 2 95 54 147 8.35e-18 82.4
Msa0726180 MtrunA17_Chr1g0158831 49.333 75 36 1 103 177 76 148 1.70e-17 79.3
Msa0726180 MtrunA17_Chr5g0423441 28.042 189 78 3 2 132 54 242 4.12e-17 79.7
Msa0726180 MtrunA17_Chr2g0280031 27.551 196 75 3 2 130 35 230 3.69e-16 77.4
Msa0726180 MtrunA17_Chr3g0096071 43.590 78 42 1 103 180 99 174 3.88e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATTCATTCTTCTTCTTT+TGG 0.113194 5_1:-26672451 Msa0726180:five_prime_UTR
TCTCTTCCTTATTGACTTCT+AGG 0.140370 5_1:-26672259 Msa0726180:five_prime_UTR
AAGGAATAGATGAACAATTT+TGG 0.161544 5_1:+26672355 None:intergenic
GACATAGTACCCAACAAATT+TGG 0.235221 5_1:+26670633 None:intergenic
TTTGAAACTTCAGATGTTAT+TGG 0.269314 5_1:-26670684 Msa0726180:intron
TTGTAAAAGACCTCAATCTT+TGG 0.286449 5_1:+26668964 None:intergenic
AAAGGGTTCGACTTATGTTT+TGG 0.288260 5_1:-26670965 Msa0726180:CDS
AATTGAGGTGTTCATTCATT+TGG 0.305182 5_1:+26672512 None:intergenic
GAAGTATAAGTTGGACTTCA+TGG 0.318932 5_1:-26670893 Msa0726180:CDS
ATCTTCACACGCACCAGTTT+TGG 0.326640 5_1:+26668992 None:intergenic
CATGAATCTAACCTCACTTA+TGG 0.327774 5_1:+26669968 None:intergenic
GTTGATAGTGACGGGAGGTT+AGG 0.337916 5_1:+26672313 None:intergenic
ACAAACTTGAAAAGTCGTTC+TGG 0.341903 5_1:+26670832 None:intergenic
TCAGACACTTCAGGTATGTT+AGG 0.344285 5_1:+26670434 None:intergenic
TGTAAAAGACCTCAATCTTT+GGG 0.375483 5_1:+26668965 None:intergenic
GAAGAATGAATCAGTGAAAA+GGG 0.379408 5_1:+26672460 None:intergenic
AGAAGAATGAATCAGTGAAA+AGG 0.385928 5_1:+26672459 None:intergenic
GTATGGTTCATGCAACTATC+AGG 0.391977 5_1:-26671023 Msa0726180:CDS
GACCCTGACTAGCAAACCTT+TGG 0.398946 5_1:-26669085 Msa0726180:intron
TCACAAGGAGGATCGTTTGC+TGG 0.401933 5_1:-26670785 Msa0726180:CDS
TCTATTTGATCCTTGAAGAT+TGG 0.404730 5_1:+26670988 None:intergenic
CACAACAAAGGAGCCAAAAC+TGG 0.410814 5_1:-26669005 Msa0726180:CDS
TTTCCCAATGCCTTGCTAGT+TGG 0.415166 5_1:+26669304 None:intergenic
TTGATAGTGACGGGAGGTTA+GGG 0.415742 5_1:+26672314 None:intergenic
TTGCGAAATTGAATGCCTAT+TGG 0.415901 5_1:-26672145 Msa0726180:five_prime_UTR
TGCTGCTATGGTGGAATCAT+TGG 0.417275 5_1:-26669052 Msa0726180:CDS
TCGAACCCTAGAAGTCAATA+AGG 0.419837 5_1:+26672253 None:intergenic
CTTCAAGGATCAAATAGAAA+AGG 0.421109 5_1:-26670983 Msa0726180:CDS
GGAATCATTGGATCACTTGA+TGG 0.435199 5_1:-26669040 Msa0726180:CDS
TACGGTAAGCCAAATTTGTT+GGG 0.436752 5_1:-26670642 Msa0726180:intron
AAACCTCCTGCCAATCTTCA+AGG 0.439450 5_1:-26670998 Msa0726180:CDS
TGCCTATTGGTAATTGTGAT+AGG 0.443467 5_1:-26672132 Msa0726180:intron
TTTGGCTTTGATGTGTGTCT+TGG 0.444630 5_1:+26672530 None:intergenic
CTCTTCCTTATTGACTTCTA+GGG 0.446225 5_1:-26672258 Msa0726180:five_prime_UTR
CTCTTATAGGAAAACGTTGA+AGG 0.447177 5_1:-26669379 Msa0726180:intron
ACCCTGACTAGCAAACCTTT+GGG 0.448085 5_1:-26669084 Msa0726180:intron
TTTGATCCTTGAAGATTGGC+AGG 0.456735 5_1:+26670992 None:intergenic
GGTTAGGGTTGCGGTGAAGA+AGG 0.458893 5_1:+26672329 None:intergenic
CAAACTTGAAAAGTCGTTCT+GGG 0.465390 5_1:+26670833 None:intergenic
TCTATGTAATCAGACACTTC+AGG 0.465687 5_1:+26670425 None:intergenic
TTACGGTAAGCCAAATTTGT+TGG 0.470486 5_1:-26670643 Msa0726180:CDS
GGGGAAGAGAGCTGCTGCTA+TGG 0.479264 5_1:-26669064 Msa0726180:CDS
GACTCCAACTAGCAAGGCAT+TGG 0.479496 5_1:-26669308 Msa0726180:CDS
AACCTATCACAATTACCAAT+AGG 0.479853 5_1:+26672130 None:intergenic
TGTGAGTAGCCAAGATATCC+AGG 0.482019 5_1:+26670803 None:intergenic
TCGCAACGGAGAGGAGATAG+TGG 0.487699 5_1:+26672162 None:intergenic
TTATTAAATTTCAGGTGTCA+TGG 0.489482 5_1:-26670498 Msa0726180:intron
TTTGATTGAGTAGTGTGGTA+TGG 0.494076 5_1:-26671040 Msa0726180:intron
AATTGCTCAGAAGTATAAGT+TGG 0.497798 5_1:-26670902 Msa0726180:CDS
TTCAAGGATCAAATAGAAAA+GGG 0.499574 5_1:-26670982 Msa0726180:CDS
GGTTGACGGCGGCGAAAGAA+AGG 0.504863 5_1:+26672291 None:intergenic
TTGGAAAATACACGTGAGAA+AGG 0.515192 5_1:+26672549 None:intergenic
TAGCAAGGCATTGGGAAAGA+TGG 0.517908 5_1:-26669299 Msa0726180:CDS
TATTAAATTTCAGGTGTCAT+GGG 0.520803 5_1:-26670497 Msa0726180:intron
AATCAAACCGTCAATGATCA+TGG 0.522602 5_1:+26670200 None:intergenic
TGGTCCAACTGTAGTATCAT+TGG 0.525087 5_1:-26670253 Msa0726180:CDS
GTGACGGGAGGTTAGGGTTG+CGG 0.525896 5_1:+26672320 None:intergenic
ACTCCAACTAGCAAGGCATT+GGG 0.530070 5_1:-26669307 Msa0726180:CDS
CATGTGGTTGAGAAGTATTA+CGG 0.530896 5_1:-26670660 Msa0726180:CDS
CACAAGGAGGATCGTTTGCT+GGG 0.530979 5_1:-26670784 Msa0726180:intron
AGAGACGGCAGCGAGGTTGA+CGG 0.533476 5_1:+26672277 None:intergenic
AAAGAAAGGTTGATAGTGAC+GGG 0.534358 5_1:+26672305 None:intergenic
GTGAAATTGAGAACAAATTG+AGG 0.538104 5_1:+26672497 None:intergenic
AGGATGACCATGATCATTGA+CGG 0.538351 5_1:-26670207 Msa0726180:CDS
TAACCTCACTTATGGCATCA+AGG 0.538434 5_1:+26669976 None:intergenic
ATGAAGTATGGCAGGATGAA+TGG 0.541959 5_1:-26670315 Msa0726180:intron
AAGTATAAGTTGGACTTCAT+GGG 0.543382 5_1:-26670892 Msa0726180:CDS
GAAGAGAGCTGCTGCTATGG+TGG 0.546142 5_1:-26669061 Msa0726180:CDS
CTCACTTATGGCATCAAGGA+AGG 0.547124 5_1:+26669980 None:intergenic
TGTCTCGAGCTGTGGGAAGA+TGG 0.551168 5_1:-26670010 Msa0726180:CDS
AAAGATGGTTGTTTGTGAGC+TGG 0.553610 5_1:-26669284 Msa0726180:CDS
AAGATTGCACCCAAAGATTG+AGG 0.554428 5_1:-26668974 None:intergenic
TCAGCCAATGATACTACAGT+TGG 0.557688 5_1:+26670249 None:intergenic
AAACATCTCAAGAGTTAGAG+AGG 0.565399 5_1:+26672392 None:intergenic
TCGTGTTGTGTCTCGAGCTG+TGG 0.565589 5_1:-26670018 Msa0726180:CDS
GGATATCTTGGCTACTCACA+AGG 0.567031 5_1:-26670800 Msa0726180:CDS
CGTGTTGTGTCTCGAGCTGT+GGG 0.574221 5_1:-26670017 Msa0726180:CDS
CGTCGAGACTGTTTGTGAGT+TGG 0.574832 5_1:-26669513 Msa0726180:CDS
AGAAGTCAATAAGGAAGAGA+CGG 0.584027 5_1:+26672262 None:intergenic
CGGAGAGGAGATAGTGGGAA+GGG 0.595199 5_1:+26672168 None:intergenic
AGGAGTTGATTCAAGTAACA+AGG 0.598003 5_1:-26669359 Msa0726180:CDS
CGGTTTGATTGAGTCGACCG+AGG 0.598261 5_1:-26670187 Msa0726180:intron
TTCAGATGTTATTGGTCATG+TGG 0.599343 5_1:-26670676 Msa0726180:intron
GTTGCGGTGAAGAAGGTGAA+AGG 0.603495 5_1:+26672336 None:intergenic
AACATCTCAAGAGTTAGAGA+GGG 0.605065 5_1:+26672393 None:intergenic
GAAAGAAAGGTTGATAGTGA+CGG 0.609442 5_1:+26672304 None:intergenic
CTTGCTAATGATGAGGAAGA+TGG 0.613159 5_1:-26669542 Msa0726180:CDS
TATATAGCTTGCTAATGATG+AGG 0.617218 5_1:-26669549 Msa0726180:intron
GCAGCAGCTCTCTTCCCCAA+AGG 0.621764 5_1:+26669069 None:intergenic
ATGATTTACTTCAAACTCAG+AGG 0.622816 5_1:-26670227 Msa0726180:CDS
CAAGCTGTTAGTCAGATGAC+TGG 0.625318 5_1:-26670273 Msa0726180:CDS
CCCTGACTAGCAAACCTTTG+GGG 0.626329 5_1:-26669083 Msa0726180:intron
TGTTGTGACTCCAACTAGCA+AGG 0.627219 5_1:-26669314 Msa0726180:CDS
CTTCCTTGATGCCATAAGTG+AGG 0.629909 5_1:-26669979 Msa0726180:intron
CGCAACGGAGAGGAGATAGT+GGG 0.632481 5_1:+26672163 None:intergenic
ATTTGATGCATCCACAACAA+AGG 0.644583 5_1:-26669017 Msa0726180:CDS
AAGTGTCTGATTACATAGAG+AGG 0.648651 5_1:-26670421 Msa0726180:intron
GATCCTTGAAGATTGGCAGG+AGG 0.650870 5_1:+26670995 None:intergenic
CATTCAATTTCGCAACGGAG+AGG 0.652591 5_1:+26672153 None:intergenic
ATAGGCATTCAATTTCGCAA+CGG 0.653709 5_1:+26672148 None:intergenic
ACGGAGAGGAGATAGTGGGA+AGG 0.658176 5_1:+26672167 None:intergenic
GACGGCAGCGAGGTTGACGG+CGG 0.662672 5_1:+26672280 None:intergenic
GAAAGGTTGATAGTGACGGG+AGG 0.664239 5_1:+26672308 None:intergenic
TATAAGTTGGACTTCATGGG+AGG 0.685837 5_1:-26670889 Msa0726180:CDS
TAACAAGGACGAAGTTACTG+TGG 0.689476 5_1:-26669344 Msa0726180:CDS
GCTGGCTAATCAAAATTCAG+CGG 0.718491 5_1:-26669266 Msa0726180:intron
GTTGGCTGATGAAAATGCTG+TGG 0.730608 5_1:-26669495 Msa0726180:intron
TATCTTGGCTACTCACAAGG+AGG 0.740430 5_1:-26670797 Msa0726180:CDS
ATAAGGAAGAGACGGCAGCG+AGG 0.788226 5_1:+26672270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAATTTTTAATTTAT+TGG - chr5_1:26670329-26670348 Msa0726180:intron 0.0%
!!! TGCTATTTATATTATATATT+AGG - chr5_1:26670261-26670280 Msa0726180:CDS 10.0%
!!! AAAATTTGTTATTAAATTTC+AGG - chr5_1:26671033-26671052 Msa0726180:intron 10.0%
!!! TTTTTCTTAAAACAAAAAAA+TGG + chr5_1:26672378-26672397 None:intergenic 10.0%
!! TAAAAATTAGAAATGGTTAA+AGG + chr5_1:26669447-26669466 None:intergenic 15.0%
!!! TTTAACCATTTCTAATTTTT+AGG - chr5_1:26669446-26669465 Msa0726180:intron 15.0%
!!! TTAACCATTTCTAATTTTTA+GGG - chr5_1:26669447-26669466 Msa0726180:intron 15.0%
!! TGAAATAGTACTTATTATTA+AGG - chr5_1:26669782-26669801 Msa0726180:intron 15.0%
!! TATATCTGAAAAATAATCTT+TGG - chr5_1:26670141-26670160 Msa0726180:intron 15.0%
!!! TATTAACTATTTTAGTAGTT+TGG - chr5_1:26670170-26670189 Msa0726180:intron 15.0%
!!! CATTTTTAATTAATATAGCA+TGG + chr5_1:26671382-26671401 None:intergenic 15.0%
!! ATATAGTAAAAAAAAGTCTA+TGG - chr5_1:26671790-26671809 Msa0726180:intron 15.0%
!! AAAACCCTAAAAATTAGAAA+TGG + chr5_1:26669454-26669473 None:intergenic 20.0%
!! TTCAATACAATTACCAAAAA+AGG + chr5_1:26669734-26669753 None:intergenic 20.0%
!!! TAATTGTATTGAACCTTTTT+TGG - chr5_1:26669741-26669760 Msa0726180:intron 20.0%
!! CGCATATATAAGAAATTATA+CGG + chr5_1:26669864-26669883 None:intergenic 20.0%
!! TATAATTTCTTATATATGCG+TGG - chr5_1:26669864-26669883 Msa0726180:intron 20.0%
!! ATATAAATAGCAAAATCCTA+CGG + chr5_1:26670253-26670272 None:intergenic 20.0%
!! CAAAATGATGATTATAAGTA+TGG - chr5_1:26670381-26670400 Msa0726180:intron 20.0%
!!! CAATATGTTATATTTTGTGT+AGG - chr5_1:26671659-26671678 Msa0726180:intron 20.0%
!! TGAAAGAAATGTAAATGAAT+TGG + chr5_1:26672083-26672102 None:intergenic 20.0%
!!! TTTTCCTATAAGAGAAAAAA+GGG + chr5_1:26672154-26672173 None:intergenic 20.0%
!!! TTGTTTTAAGAAAAAATCCA+TGG - chr5_1:26672383-26672402 Msa0726180:five_prime_UTR 20.0%
!! AGGAATAGATGAACAATTTT+GGG + chr5_1:26669186-26669205 None:intergenic 25.0%
!! AAGGAATAGATGAACAATTT+TGG + chr5_1:26669187-26669206 None:intergenic 25.0%
! CCTGCAAAATTAAAATTCAA+TGG + chr5_1:26669487-26669506 None:intergenic 25.0%
!!! CCATTGAATTTTAATTTTGC+AGG - chr5_1:26669484-26669503 Msa0726180:intron 25.0%
!!! ATTTTAATTTTGCAGGTGTA+AGG - chr5_1:26669491-26669510 Msa0726180:intron 25.0%
! GAGAAGATGAGAAAAAAAAA+TGG - chr5_1:26669513-26669532 Msa0726180:CDS 25.0%
! TAGAAACTAAAACTGAGAAT+GGG + chr5_1:26669572-26669591 None:intergenic 25.0%
! ATAGAAACTAAAACTGAGAA+TGG + chr5_1:26669573-26669592 None:intergenic 25.0%
!!! AATTTTTAATTCGAACTTGC+AGG - chr5_1:26670097-26670116 Msa0726180:intron 25.0%
!! TATTGGTGATAATGATAGTA+TGG - chr5_1:26670346-26670365 Msa0726180:intron 25.0%
!! ATTGGTGATAATGATAGTAT+GGG - chr5_1:26670347-26670366 Msa0726180:intron 25.0%
! AAATATATTTAGCTGCTCAT+TGG + chr5_1:26670421-26670440 None:intergenic 25.0%
!!! ATTTTTTTGATTGAGTAGTG+TGG - chr5_1:26670494-26670513 Msa0726180:intron 25.0%
! TTCAAGGATCAAATAGAAAA+GGG - chr5_1:26670557-26670576 Msa0726180:intron 25.0%
!!! TTATGTTTTGGAGAGATTTA+TGG - chr5_1:26670586-26670605 Msa0726180:intron 25.0%
!!! ATTTTTTGCATAGCATTCAA+TGG - chr5_1:26670781-26670800 Msa0726180:intron 25.0%
!! TTTGAAACTTCAGATGTTAT+TGG - chr5_1:26670855-26670874 Msa0726180:CDS 25.0%
!!! GTACTATGTCTACTTTTAAT+TGG - chr5_1:26670919-26670938 Msa0726180:CDS 25.0%
!!! TCTACTTTTAATTGGTGATA+GGG - chr5_1:26670927-26670946 Msa0726180:CDS 25.0%
! ATTCATTAGACTATAATGCT+TGG + chr5_1:26671008-26671027 None:intergenic 25.0%
!! TTATTAAATTTCAGGTGTCA+TGG - chr5_1:26671041-26671060 Msa0726180:intron 25.0%
!! TATTAAATTTCAGGTGTCAT+GGG - chr5_1:26671042-26671061 Msa0726180:intron 25.0%
!!! GGTATTTCTAATGCATTTTA+TGG - chr5_1:26671063-26671082 Msa0726180:intron 25.0%
! ATTATTAATGCCATGAAGTA+TGG - chr5_1:26671212-26671231 Msa0726180:intron 25.0%
!!! TCGAGTTTTATAAATTGAAG+TGG - chr5_1:26671465-26671484 Msa0726180:intron 25.0%
!!! AGTTTTATAAATTGAAGTGG+AGG - chr5_1:26671468-26671487 Msa0726180:intron 25.0%
!!! AAATTATGCAGCTATTTTGA+AGG + chr5_1:26671614-26671633 None:intergenic 25.0%
!!! ACATATATAGCTTGCTAATA+TGG - chr5_1:26671939-26671958 Msa0726180:intron 25.0%
!! GTTTTCCTATAAGAGAAAAA+AGG + chr5_1:26672155-26672174 None:intergenic 25.0%
! AATTGAGGTGTTCATTCATT+TGG + chr5_1:26669030-26669049 None:intergenic 30.0%
GTGAAATTGAGAACAAATTG+AGG + chr5_1:26669045-26669064 None:intergenic 30.0%
GAAGAATGAATCAGTGAAAA+GGG + chr5_1:26669082-26669101 None:intergenic 30.0%
AGAAGAATGAATCAGTGAAA+AGG + chr5_1:26669083-26669102 None:intergenic 30.0%
! CTGATTCATTCTTCTTCTTT+TGG - chr5_1:26669088-26669107 Msa0726180:intron 30.0%
!! GTTGATTTTTGATTCACAAC+GGG + chr5_1:26669347-26669366 None:intergenic 30.0%
!!! CGTTGATTTTTGATTCACAA+CGG + chr5_1:26669348-26669367 None:intergenic 30.0%
CGTTGTGAATCAAAAATCAA+CGG - chr5_1:26669346-26669365 Msa0726180:CDS 30.0%
AACCTATCACAATTACCAAT+AGG + chr5_1:26669412-26669431 None:intergenic 30.0%
GGTTTCTGACATTACTATTA+AGG + chr5_1:26669545-26669564 None:intergenic 30.0%
!!! GCAAAATGATGAACCTTTTT+TGG - chr5_1:26669718-26669737 Msa0726180:intron 30.0%
TAAATAGCTGCTACCAAAAA+AGG + chr5_1:26669757-26669776 None:intergenic 30.0%
TTTCTTATATATGCGTGGAA+TGG - chr5_1:26669869-26669888 Msa0726180:intron 30.0%
! CATGATTAGCTGAACTTATA+CGG + chr5_1:26669942-26669961 None:intergenic 30.0%
!!! CTTAAGCTATTTTCAGGTAA+TGG + chr5_1:26670038-26670057 None:intergenic 30.0%
!!! CTATTTTAGTAGTTTGGCTT+AGG - chr5_1:26670176-26670195 Msa0726180:intron 30.0%
GAATTGGTTGTAATAACCTT+TGG - chr5_1:26670198-26670217 Msa0726180:CDS 30.0%
TCTATTTGATCCTTGAAGAT+TGG + chr5_1:26670554-26670573 None:intergenic 30.0%
CTTCAAGGATCAAATAGAAA+AGG - chr5_1:26670556-26670575 Msa0726180:intron 30.0%
! AATTGCTCAGAAGTATAAGT+TGG - chr5_1:26670637-26670656 Msa0726180:intron 30.0%
! AAGTATAAGTTGGACTTCAT+GGG - chr5_1:26670647-26670666 Msa0726180:CDS 30.0%
!!! TTTCAAGTTTGTTCTTTTCC+TGG - chr5_1:26670718-26670737 Msa0726180:intron 30.0%
!! GTCTACTTTTAATTGGTGAT+AGG - chr5_1:26670926-26670945 Msa0726180:CDS 30.0%
! ATTTTATGGCACGAAAATGA+TGG - chr5_1:26671077-26671096 Msa0726180:intron 30.0%
ATGATTTACTTCAAACTCAG+AGG - chr5_1:26671312-26671331 Msa0726180:intron 30.0%
TCAAACTTGACAAATGACTT+TGG + chr5_1:26671501-26671520 None:intergenic 30.0%
ATTCATGAAACTCAACAGAT+AGG - chr5_1:26671587-26671606 Msa0726180:intron 30.0%
TGGATGATAGTATCATTGAA+CGG - chr5_1:26671810-26671829 Msa0726180:intron 30.0%
AACGGTTTATATCACTACAT+GGG - chr5_1:26671828-26671847 Msa0726180:intron 30.0%
!! TATATAGCTTGCTAATGATG+AGG - chr5_1:26671990-26672009 Msa0726180:intron 30.0%
TTGGAAAATACACGTGAGAA+AGG + chr5_1:26668993-26669012 None:intergenic 35.0%
AACATCTCAAGAGTTAGAGA+GGG + chr5_1:26669149-26669168 None:intergenic 35.0%
AAACATCTCAAGAGTTAGAG+AGG + chr5_1:26669150-26669169 None:intergenic 35.0%
!! AAAGAAAGGTTGATAGTGAC+GGG + chr5_1:26669237-26669256 None:intergenic 35.0%
!! GAAAGAAAGGTTGATAGTGA+CGG + chr5_1:26669238-26669257 None:intergenic 35.0%
AGAAGTCAATAAGGAAGAGA+CGG + chr5_1:26669280-26669299 None:intergenic 35.0%
!! TCTCTTCCTTATTGACTTCT+AGG - chr5_1:26669280-26669299 Msa0726180:CDS 35.0%
!! CTCTTCCTTATTGACTTCTA+GGG - chr5_1:26669281-26669300 Msa0726180:CDS 35.0%
ATAGGCATTCAATTTCGCAA+CGG + chr5_1:26669394-26669413 None:intergenic 35.0%
TTGCGAAATTGAATGCCTAT+TGG - chr5_1:26669394-26669413 Msa0726180:intron 35.0%
! TGCCTATTGGTAATTGTGAT+AGG - chr5_1:26669407-26669426 Msa0726180:intron 35.0%
GAAACAATTATAGAGTCGTG+AGG - chr5_1:26669615-26669634 Msa0726180:intron 35.0%
AAACACAAAACATGTCTGCA+AGG + chr5_1:26669825-26669844 None:intergenic 35.0%
AGTTCAGCTAATCATGTTTG+TGG - chr5_1:26669946-26669965 Msa0726180:intron 35.0%
! TAGTAGTTTGGCTTAGGAAT+TGG - chr5_1:26670182-26670201 Msa0726180:intron 35.0%
CAACTAACACGTTATTCCAA+AGG + chr5_1:26670217-26670236 None:intergenic 35.0%
TGGAATAACGTGTTAGTTGA+TGG - chr5_1:26670218-26670237 Msa0726180:CDS 35.0%
TTTGATTGAGTAGTGTGGTA+TGG - chr5_1:26670499-26670518 Msa0726180:intron 35.0%
! AAAGGGTTCGACTTATGTTT+TGG - chr5_1:26670574-26670593 Msa0726180:intron 35.0%
!!! GAGCAATTGTTTTGAACGTA+GGG + chr5_1:26670625-26670644 None:intergenic 35.0%
!!! TGAGCAATTGTTTTGAACGT+AGG + chr5_1:26670626-26670645 None:intergenic 35.0%
! GAAGTATAAGTTGGACTTCA+TGG - chr5_1:26670646-26670665 Msa0726180:CDS 35.0%
!! GGGAGGAACAAATGTTTTTA+AGG - chr5_1:26670667-26670686 Msa0726180:CDS 35.0%
CAAACTTGAAAAGTCGTTCT+GGG + chr5_1:26670709-26670728 None:intergenic 35.0%
ACAAACTTGAAAAGTCGTTC+TGG + chr5_1:26670710-26670729 None:intergenic 35.0%
! TGTTCTTTTCCTGGATATCT+TGG - chr5_1:26670727-26670746 Msa0726180:intron 35.0%
TTCAGATGTTATTGGTCATG+TGG - chr5_1:26670863-26670882 Msa0726180:CDS 35.0%
!! CATGTGGTTGAGAAGTATTA+CGG - chr5_1:26670879-26670898 Msa0726180:CDS 35.0%
TTACGGTAAGCCAAATTTGT+TGG - chr5_1:26670896-26670915 Msa0726180:CDS 35.0%
! TACGGTAAGCCAAATTTGTT+GGG - chr5_1:26670897-26670916 Msa0726180:CDS 35.0%
GACATAGTACCCAACAAATT+TGG + chr5_1:26670909-26670928 None:intergenic 35.0%
TCTATGTAATCAGACACTTC+AGG + chr5_1:26671117-26671136 None:intergenic 35.0%
AAGTGTCTGATTACATAGAG+AGG - chr5_1:26671118-26671137 Msa0726180:intron 35.0%
AATCAAACCGTCAATGATCA+TGG + chr5_1:26671342-26671361 None:intergenic 35.0%
TAATATAGCATGGTTCACCT+CGG + chr5_1:26671372-26671391 None:intergenic 35.0%
CATGAATCTAACCTCACTTA+TGG + chr5_1:26671574-26671593 None:intergenic 35.0%
! ACAAACATTTTGAGCTCAAG+AGG + chr5_1:26671705-26671724 None:intergenic 35.0%
GAACGGTTTATATCACTACA+TGG - chr5_1:26671827-26671846 Msa0726180:intron 35.0%
ACCATATAGAATTGGTTGAC+AGG + chr5_1:26671895-26671914 None:intergenic 35.0%
TAGCTCAGACCATATAGAAT+TGG + chr5_1:26671903-26671922 None:intergenic 35.0%
!!! TGCACCCTTTTTTCTCTTAT+AGG - chr5_1:26672147-26672166 Msa0726180:five_prime_UTR 35.0%
CTCTTATAGGAAAACGTTGA+AGG - chr5_1:26672160-26672179 Msa0726180:five_prime_UTR 35.0%
! AGGAGTTGATTCAAGTAACA+AGG - chr5_1:26672180-26672199 Msa0726180:five_prime_UTR 35.0%
TAGTAGTAGCAACCATCTAA+AGG - chr5_1:26672346-26672365 Msa0726180:five_prime_UTR 35.0%
AAATGGTGCATTCCTTTAGA+TGG + chr5_1:26672361-26672380 None:intergenic 35.0%
ATTTGATGCATCCACAACAA+AGG - chr5_1:26672522-26672541 Msa0726180:five_prime_UTR 35.0%
!! TTTGGCTTTGATGTGTGTCT+TGG + chr5_1:26669012-26669031 None:intergenic 40.0%
TCGAACCCTAGAAGTCAATA+AGG + chr5_1:26669289-26669308 None:intergenic 40.0%
CTAAAACTGAGAATGGGTGT+TGG + chr5_1:26669566-26669585 None:intergenic 40.0%
ATATATGCGTGGAATGGCTT+CGG - chr5_1:26669875-26669894 Msa0726180:intron 40.0%
!! GACGTGCTTAAGCTATTTTC+AGG + chr5_1:26670044-26670063 None:intergenic 40.0%
GTATGGTTCATGCAACTATC+AGG - chr5_1:26670516-26670535 Msa0726180:intron 40.0%
TTTGATCCTTGAAGATTGGC+AGG + chr5_1:26670550-26670569 None:intergenic 40.0%
! TATAAGTTGGACTTCATGGG+AGG - chr5_1:26670650-26670669 Msa0726180:CDS 40.0%
TCAGACACTTCAGGTATGTT+AGG + chr5_1:26671108-26671127 None:intergenic 40.0%
TTAATGCCATGAAGTATGGC+AGG - chr5_1:26671216-26671235 Msa0726180:intron 40.0%
ATTCATCCTGCCATACTTCA+TGG + chr5_1:26671225-26671244 None:intergenic 40.0%
ATGAAGTATGGCAGGATGAA+TGG - chr5_1:26671224-26671243 Msa0726180:intron 40.0%
TGGTCCAACTGTAGTATCAT+TGG - chr5_1:26671286-26671305 Msa0726180:intron 40.0%
TCAGCCAATGATACTACAGT+TGG + chr5_1:26671293-26671312 None:intergenic 40.0%
AGGATGACCATGATCATTGA+CGG - chr5_1:26671332-26671351 Msa0726180:intron 40.0%
TAACCTCACTTATGGCATCA+AGG + chr5_1:26671566-26671585 None:intergenic 40.0%
ATGCCAACCTCTATCGTAAT+AGG - chr5_1:26671760-26671779 Msa0726180:intron 40.0%
GCCTGTCAACCAATTCTATA+TGG - chr5_1:26671891-26671910 Msa0726180:intron 40.0%
!! TAGCTTGCTAATATGGTCTG+AGG - chr5_1:26671946-26671965 Msa0726180:intron 40.0%
CTTGCTAATGATGAGGAAGA+TGG - chr5_1:26671997-26672016 Msa0726180:intron 40.0%
TAACAAGGACGAAGTTACTG+TGG - chr5_1:26672195-26672214 Msa0726180:five_prime_UTR 40.0%
AAAGATGGTTGTTTGTGAGC+TGG - chr5_1:26672255-26672274 Msa0726180:five_prime_UTR 40.0%
GCTGGCTAATCAAAATTCAG+CGG - chr5_1:26672273-26672292 Msa0726180:five_prime_UTR 40.0%
GGAATCATTGGATCACTTGA+TGG - chr5_1:26672499-26672518 Msa0726180:five_prime_UTR 40.0%
!! TTGATAGTGACGGGAGGTTA+GGG + chr5_1:26669228-26669247 None:intergenic 45.0%
CATTCAATTTCGCAACGGAG+AGG + chr5_1:26669389-26669408 None:intergenic 45.0%
! TTGATGGATGTAACAGCCGT+AGG - chr5_1:26670234-26670253 Msa0726180:CDS 45.0%
AAACCTCCTGCCAATCTTCA+AGG - chr5_1:26670541-26670560 Msa0726180:intron 45.0%
TGTGAGTAGCCAAGATATCC+AGG + chr5_1:26670739-26670758 None:intergenic 45.0%
GGATATCTTGGCTACTCACA+AGG - chr5_1:26670739-26670758 Msa0726180:intron 45.0%
TATCTTGGCTACTCACAAGG+AGG - chr5_1:26670742-26670761 Msa0726180:intron 45.0%
CAAGCTGTTAGTCAGATGAC+TGG - chr5_1:26671266-26671285 Msa0726180:intron 45.0%
CTCACTTATGGCATCAAGGA+AGG + chr5_1:26671562-26671581 None:intergenic 45.0%
CTTCCTTGATGCCATAAGTG+AGG - chr5_1:26671560-26671579 Msa0726180:intron 45.0%
AGTTGCGCCTATTACGATAG+AGG + chr5_1:26671770-26671789 None:intergenic 45.0%
GTTGGCTGATGAAAATGCTG+TGG - chr5_1:26672044-26672063 Msa0726180:intron 45.0%
TGTTGTGACTCCAACTAGCA+AGG - chr5_1:26672225-26672244 Msa0726180:five_prime_UTR 45.0%
! ACTCCAACTAGCAAGGCATT+GGG - chr5_1:26672232-26672251 Msa0726180:five_prime_UTR 45.0%
TTTCCCAATGCCTTGCTAGT+TGG + chr5_1:26672238-26672257 None:intergenic 45.0%
!! TAGCAAGGCATTGGGAAAGA+TGG - chr5_1:26672240-26672259 Msa0726180:five_prime_UTR 45.0%
TATCAGTGGAATCAGCTCCA+TGG + chr5_1:26672403-26672422 None:intergenic 45.0%
! TGGAGCTGATTCCACTGATA+AGG - chr5_1:26672403-26672422 Msa0726180:five_prime_UTR 45.0%
ACCCTGACTAGCAAACCTTT+GGG - chr5_1:26672455-26672474 Msa0726180:five_prime_UTR 45.0%
! TGCTGCTATGGTGGAATCAT+TGG - chr5_1:26672487-26672506 Msa0726180:five_prime_UTR 45.0%
!!! CAGTTTTGGCTCCTTTGTTG+TGG + chr5_1:26672536-26672555 None:intergenic 45.0%
CACAACAAAGGAGCCAAAAC+TGG - chr5_1:26672534-26672553 Msa0726180:five_prime_UTR 45.0%
! ATCTTCACACGCACCAGTTT+TGG + chr5_1:26672550-26672569 None:intergenic 45.0%
GTTGCGGTGAAGAAGGTGAA+AGG + chr5_1:26669206-26669225 None:intergenic 50.0%
!! GTTGATAGTGACGGGAGGTT+AGG + chr5_1:26669229-26669248 None:intergenic 50.0%
!! GAAAGGTTGATAGTGACGGG+AGG + chr5_1:26669234-26669253 None:intergenic 50.0%
GATCCTTGAAGATTGGCAGG+AGG + chr5_1:26670547-26670566 None:intergenic 50.0%
TCACAAGGAGGATCGTTTGC+TGG - chr5_1:26670754-26670773 Msa0726180:intron 50.0%
CACAAGGAGGATCGTTTGCT+GGG - chr5_1:26670755-26670774 Msa0726180:intron 50.0%
GCGCCTATTACGATAGAGGT+TGG + chr5_1:26671766-26671785 None:intergenic 50.0%
CGTCGAGACTGTTTGTGAGT+TGG - chr5_1:26672026-26672045 Msa0726180:intron 50.0%
GACTCCAACTAGCAAGGCAT+TGG - chr5_1:26672231-26672250 Msa0726180:five_prime_UTR 50.0%
AGCGACATCGTCCTTATCAG+TGG + chr5_1:26672417-26672436 None:intergenic 50.0%
GACCCTGACTAGCAAACCTT+TGG - chr5_1:26672454-26672473 Msa0726180:five_prime_UTR 50.0%
!! CCCCAAAGGTTTGCTAGTCA+GGG + chr5_1:26672459-26672478 None:intergenic 50.0%
CCCTGACTAGCAAACCTTTG+GGG - chr5_1:26672456-26672475 Msa0726180:five_prime_UTR 50.0%
!! TCCCCAAAGGTTTGCTAGTC+AGG + chr5_1:26672460-26672479 None:intergenic 50.0%
GGTTAGGGTTGCGGTGAAGA+AGG + chr5_1:26669213-26669232 None:intergenic 55.0%
ATAAGGAAGAGACGGCAGCG+AGG + chr5_1:26669272-26669291 None:intergenic 55.0%
!! CGGAGAGGAGATAGTGGGAA+GGG + chr5_1:26669374-26669393 None:intergenic 55.0%
!! ACGGAGAGGAGATAGTGGGA+AGG + chr5_1:26669375-26669394 None:intergenic 55.0%
CGCAACGGAGAGGAGATAGT+GGG + chr5_1:26669379-26669398 None:intergenic 55.0%
TCGCAACGGAGAGGAGATAG+TGG + chr5_1:26669380-26669399 None:intergenic 55.0%
CGGTTTGATTGAGTCGACCG+AGG - chr5_1:26671352-26671371 Msa0726180:intron 55.0%
TCGTGTTGTGTCTCGAGCTG+TGG - chr5_1:26671521-26671540 Msa0726180:intron 55.0%
CGTGTTGTGTCTCGAGCTGT+GGG - chr5_1:26671522-26671541 Msa0726180:intron 55.0%
TGTCTCGAGCTGTGGGAAGA+TGG - chr5_1:26671529-26671548 Msa0726180:intron 55.0%
GAAGAGAGCTGCTGCTATGG+TGG - chr5_1:26672478-26672497 Msa0726180:five_prime_UTR 55.0%
! GTGACGGGAGGTTAGGGTTG+CGG + chr5_1:26669222-26669241 None:intergenic 60.0%
GGTTGACGGCGGCGAAAGAA+AGG + chr5_1:26669251-26669270 None:intergenic 60.0%
AGAGACGGCAGCGAGGTTGA+CGG + chr5_1:26669265-26669284 None:intergenic 60.0%
GCAGCAGCTCTCTTCCCCAA+AGG + chr5_1:26672473-26672492 None:intergenic 60.0%
GGGGAAGAGAGCTGCTGCTA+TGG - chr5_1:26672475-26672494 Msa0726180:five_prime_UTR 60.0%
GACGGCAGCGAGGTTGACGG+CGG + chr5_1:26669262-26669281 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 26668976 26672585 26668976 ID=Msa0726180;Name=Msa0726180
chr5_1 mRNA 26668976 26672585 26668976 ID=Msa0726180-mRNA-1;Parent=Msa0726180;Name=Msa0726180-mRNA-1;_AED=0.20;_eAED=0.27;_QI=459|0.55|0.6|1|0.88|0.8|10|0|331
chr5_1 exon 26668976 26669095 26668976 ID=Msa0726180-mRNA-1:exon:9486;Parent=Msa0726180-mRNA-1
chr5_1 exon 26669267 26669392 26669267 ID=Msa0726180-mRNA-1:exon:9485;Parent=Msa0726180-mRNA-1
chr5_1 exon 26669496 26669564 26669496 ID=Msa0726180-mRNA-1:exon:9484;Parent=Msa0726180-mRNA-1
chr5_1 exon 26669809 26669880 26669809 ID=Msa0726180-mRNA-1:exon:9483;Parent=Msa0726180-mRNA-1
chr5_1 exon 26669980 26670057 26669980 ID=Msa0726180-mRNA-1:exon:9482;Parent=Msa0726180-mRNA-1
chr5_1 exon 26670188 26670323 26670188 ID=Msa0726180-mRNA-1:exon:9481;Parent=Msa0726180-mRNA-1
chr5_1 exon 26670422 26670506 26670422 ID=Msa0726180-mRNA-1:exon:9480;Parent=Msa0726180-mRNA-1
chr5_1 exon 26670643 26670693 26670643 ID=Msa0726180-mRNA-1:exon:9479;Parent=Msa0726180-mRNA-1
chr5_1 exon 26670785 26671049 26670785 ID=Msa0726180-mRNA-1:exon:9478;Parent=Msa0726180-mRNA-1
chr5_1 exon 26672133 26672585 26672133 ID=Msa0726180-mRNA-1:exon:9477;Parent=Msa0726180-mRNA-1
chr5_1 five_prime_UTR 26672133 26672585 26672133 ID=Msa0726180-mRNA-1:five_prime_utr;Parent=Msa0726180-mRNA-1
chr5_1 five_prime_UTR 26671044 26671049 26671044 ID=Msa0726180-mRNA-1:five_prime_utr;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26670785 26671043 26670785 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26670643 26670693 26670643 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26670422 26670506 26670422 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26670188 26670323 26670188 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26669980 26670057 26669980 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26669809 26669880 26669809 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26669496 26669564 26669496 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26669267 26669392 26669267 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
chr5_1 CDS 26668976 26669095 26668976 ID=Msa0726180-mRNA-1:cds;Parent=Msa0726180-mRNA-1
Gene Sequence

>Msa0726180

ATGGTTCATGCAACTATCAGGAAAAACCTCCTGCCAATCTTCAAGGATCAAATAGAAAAGGGTTCGACTTATGTTTTGGAGAGATTTATGGTTGCTCAGAATGACCCTACGTTCAAAACAATTGCTCAGAAGTATAAGTTGGACTTCATGGGAGGAACAAATGTTTTTAAGGTCAATGCTACTGAAATCCCAGAACGACTTTTCAAGTTTGTTCTTTTCCTGGATATCTTGGCTACTCACAAGGAGGATCGTTTGCTGGATGTTATTGGTCATGTGGTTGAGAAGTATTACGGTAAGCCAAATTTGTTGGGTGTCATGGGTATTTCTAATGCATTTTATGGCACGAAAATGATGGTGAATCCTAACATACCTGAAGTGTCTGATTACATAGAGAGGATGAATGGTGCAAATGTTGAGCTCACACAAGCTGTTAGTCAGATGACTGGTCCAACTGTAGTATCATTGGCTGATGATTTACTTCAAACTCAGAGGATGACCATGATCATTGACGGTTTGATTGAGTCGACCGAGTCATTTGTCAAGTTTGATCGTGTTGTGTCTCGAGCTGTGGGAAGATGGTCACAATCCTTCCTTGATGCCATAAGTGAGGCAAACACTTCTGCTGAATGTCCTCTTGAGCTCAAAATGTTTGTTGACAAGCGAATGTTGTTCAAAGTTGAACTTGCTAATGATGAGGAAGATGGTGCATACGTCGAGACTGTTTGTGAGTTGGCTGATGAAAATGCTGTGGAAAACGTTGAAGGAGTTGATTCAAGTAACAAGGACGAAGTTACTGTGGTTGATTCTGTTGTGACTCCAACTAGCAAGGCATTGGGAAAGATGGTTGTTTGTGAGCTGGCTAATCAAAATTCAGCGCAAACCTTTGGGGAAGAGAGCTGCTGCTATGGTGGAATCATTGGATCACTTGATGGATTTGATGCATCCACAACAAAGGAGCCAAAACTGGTGCGTGTGAAGATTGCACCCAAAGATTGA

Protein sequence

>Msa0726180

MVHATIRKNLLPIFKDQIEKGSTYVLERFMVAQNDPTFKTIAQKYKLDFMGGTNVFKVNATEIPERLFKFVLFLDILATHKEDRLLDVIGHVVEKYYGKPNLLGVMGISNAFYGTKMMVNPNIPEVSDYIERMNGANVELTQAVSQMTGPTVVSLADDLLQTQRMTMIIDGLIESTESFVKFDRVVSRAVGRWSQSFLDAISEANTSAECPLELKMFVDKRMLFKVELANDEEDGAYVETVCELADENAVENVEGVDSSNKDEVTVVDSVVTPTSKALGKMVVCELANQNSAQTFGEESCCYGGIIGSLDGFDASTTKEPKLVRVKIAPKD*