AlfalfaGEDB | Msa0730440

M. sativa cultivar zhongmu-4 / Msa0730440

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730440	XP_024639443.1	93.250	400	27	0	1	400	1	400	0.0	747

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730440	sp\|Q9ASS4\|Y5838_ARATH	34.421	337	172	9	89	386	276	602	5.42e-47	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730440	A0A396HRD4	93.250	400	27	0	1	400	1	400	0.0	747

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0730440	Msa0849400	0.821278	4.395578e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730440	MtrunA17_Chr5g0423761	93.250	400	27	0	1	400	1	400	0.0	747
Msa0730440	MtrunA17_Chr4g0049211	70.000	290	82	4	104	390	1	288	1.29e-140	402
Msa0730440	MtrunA17_Chr4g0049161	43.450	313	148	7	99	397	11	308	3.19e-75	236
Msa0730440	MtrunA17_Chr4g0049201	39.494	395	203	11	4	384	48	420	2.05e-72	233
Msa0730440	MtrunA17_Chr4g0049181	37.438	406	220	10	7	397	243	629	1.63e-71	236
Msa0730440	MtrunA17_Chr7g0249841	35.474	327	171	8	90	386	277	593	2.58e-45	165
Msa0730440	MtrunA17_Chr8g0337671	33.429	347	182	10	90	403	281	611	1.66e-44	163
Msa0730440	MtrunA17_Chr6g0452221	31.212	330	191	7	90	393	278	597	3.37e-34	134
Msa0730440	MtrunA17_Chr3g0109461	32.333	300	157	9	98	366	324	608	1.21e-32	129
Msa0730440	MtrunA17_Chr8g0364671	29.720	286	167	6	112	370	59	337	4.85e-32	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730440	AT5G48380.1	34.421	337	172	9	89	386	276	602	5.51e-48	173
Msa0730440	AT5G65700.1	33.981	309	162	13	95	373	672	968	7.19e-31	125
Msa0730440	AT5G65700.2	33.981	309	162	13	95	373	672	968	7.19e-31	125
Msa0730440	AT5G45780.2	32.414	290	162	9	103	366	244	525	8.18e-31	124
Msa0730440	AT5G07280.1	27.877	391	221	13	16	373	830	1192	9.20e-31	125
Msa0730440	AT5G45780.1	32.323	297	166	10	96	366	281	568	1.04e-30	124
Msa0730440	AT3G49670.1	34.304	309	161	13	95	373	668	964	1.49e-30	124
Msa0730440	AT2G33170.2	31.169	308	170	8	103	376	806	1105	5.59e-30	123
Msa0730440	AT2G33170.1	31.169	308	170	8	103	376	806	1105	5.59e-30	123
Msa0730440	AT1G69990.1	29.167	312	185	10	90	376	269	569	1.01e-29	121

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Find 60 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAGAGTGTTTCCTA+TGG	0.561618	5_1:-39582945	Msa0730440:CDS
AAACATAGGACTTGAGAAGA+AGG	0.533180	5_1:-39582258	Msa0730440:CDS
AAGAAGGATGTTTCTGACTT+TGG	0.447602	5_1:-39582242	Msa0730440:CDS
AAGGTTATTAAAATTGCACT+TGG	0.568776	5_1:-39582428	Msa0730440:CDS
AATTCTGACTGTATCTTGTT+AGG	0.214649	5_1:-39582347	Msa0730440:CDS
ACAAAGGCCTACTATGCTTG+AGG	0.644010	5_1:-39581988	Msa0730440:CDS
ACAACAAGATATGCAACATA+GGG	0.538620	5_1:-39581962	Msa0730440:CDS
ACCAATTCAAAGAATCATTT+AGG	0.372981	5_1:-39585238	Msa0730440:CDS
ACCGCCAAGAAACAACCGTT+CGG	0.576108	5_1:+39582656	None:intergenic
ACGTGCAACTCTAAGAAGAG+TGG	0.618834	5_1:+39582034	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCCTAAATGATTCTTTGAAT+TGG	+	chr5_1:39581883-39581902	None:intergenic	30.0%
TTCAAAGAATCATTTAGGCA+TGG	-	chr5_1:39581884-39581903	Msa0730440:CDS	30.0%
CCTAAAAGAAATATGCAGAA+AGG	+	chr5_1:39582135-39582154	None:intergenic	30.0%
TACAAAACAACCAATAGAGT+CGG	-	chr5_1:39582407-39582426	Msa0730440:CDS	30.0%
TTTGCGTTATTAATAGAGTC+AGG	-	chr5_1:39582469-39582488	Msa0730440:CDS	30.0%
TTGCGTTATTAATAGAGTCA+GGG	-	chr5_1:39582470-39582489	Msa0730440:CDS	30.0%
AAAGATAGGGATCAATTTGA+TGG	-	chr5_1:39582514-39582533	Msa0730440:CDS	30.0%
GAGTCTAACATAAGAAATGT+AGG	-	chr5_1:39582587-39582606	Msa0730440:CDS	30.0%
TGATATGATCTTTAATGCGT+TGG	+	chr5_1:39582629-39582648	None:intergenic	30.0%
TGATCTCTTGGTTAAGATAT+AGG	+	chr5_1:39582967-39582986	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	39581866	39585273	39581866	ID=Msa0730440;Name=Msa0730440
chr5_1	mRNA	39581866	39585273	39581866	ID=Msa0730440-mRNA-1;Parent=Msa0730440;Name=Msa0730440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|3\|0\|405
chr5_1	exon	39585061	39585273	39585061	ID=Msa0730440-mRNA-1:exon:11683;Parent=Msa0730440-mRNA-1
chr5_1	exon	39582922	39582987	39582922	ID=Msa0730440-mRNA-1:exon:11682;Parent=Msa0730440-mRNA-1
chr5_1	exon	39581866	39582804	39581866	ID=Msa0730440-mRNA-1:exon:11681;Parent=Msa0730440-mRNA-1
chr5_1	CDS	39585061	39585273	39585061	ID=Msa0730440-mRNA-1:cds;Parent=Msa0730440-mRNA-1
chr5_1	CDS	39582922	39582987	39582922	ID=Msa0730440-mRNA-1:cds;Parent=Msa0730440-mRNA-1
chr5_1	CDS	39581866	39582804	39581866	ID=Msa0730440-mRNA-1:cds;Parent=Msa0730440-mRNA-1

Gene Sequence

>Msa0730440

ATGGAATTCTCTAACCAATTCAAAGAATCATTTAGGCATGGTCTTATTGCTGGGTATTGTTTTACTGCAACTTTTGTCATAGTTTTTTATATGTTCTATTGTCTACCTGCACAACTTATCAAGAATAGAAAAAATAAGAAAGTTGGACATATGAAAACAGAAAAGATGCGCAAATTGCCTTGCCAGAATTTTAAACAGCAAAAGTTCAACCAGAAACTAAAGAAAGTTAGACAAAAAGACAGAGTGTTTCCTATGGAGTTGATAGAGAAAAGCATACAGATCAGTAAAGTTGGACGATTGACTTATAGAATGAACTTCACAAAACTCTGTCATGCAACCAAATATTTTAGCTTCGACAATGTCATTGGCGTCGGAGTAATTGGAATAATGTACAAGGCGACTCTTCCGAACGGTTGTTTCTTGGCGGTTAAGAGACTATATGATTCTCAATCAATTATCAAAAGTTTTGAGTTAGAAATAATGATTTTGGGACAATACAGTCATAGAAACATTGTTTCATTGATTGGTTTCAGCATAGAAGAAGGAAACAATGAAAAAATTTTGGTGTATCAATATATGTCGAACGGAAGGCTATCTGATAGGTTGAAAGAAACTAAAAAATTAGAATGGTCAAAGGTTATTAAAATTGCACTTGGTGTAGCAAGAGGCTTATGTTGCCTCCATCATAGCTTGCATATGGTTCATCTCAATATAAATTCTGACTGTATCTTGTTAGGGAAAAATTTTGAGCCAAAAATATCTAATTTCGGAGGGATCGTGTTTATGAATAATGATCTGGAAAAAAACATAGGACTTGAGAAGAAGGATGTTTCTGACTTTGGTTGTTTGCTTTTTGAGATGATTAATGAGAAAAAATTTGGGGAAATACATGAATATTTTAACAATGTTACAGTTCCTTTTGTGACTTATCCGAATCATGTGAATATGTTGGAGGACGACCCTTCTGGATTCTGTGATGCAGTGGATGAATATCTAGACAAGATAGAATTTGAAGATGAGGAGGTATCCACTCTTCTTAGAGTTGCACGTGAATGTGTTCATCCTTTGTTTGAACAAAGGCCTACTATGCTTGAGGTGTACAACAAGATATGCAACATAGGGGAAAGAGATAGAATTTGTGAAGATGATGACCTCTTGTCTATGGATTTTGTTACTCCTAATGAAGTAGACACCAATATGCTTAATATGACACAATAA

Protein sequence

>Msa0730440

MEFSNQFKESFRHGLIAGYCFTATFVIVFYMFYCLPAQLIKNRKNKKVGHMKTEKMRKLPCQNFKQQKFNQKLKKVRQKDRVFPMELIEKSIQISKVGRLTYRMNFTKLCHATKYFSFDNVIGVGVIGIMYKATLPNGCFLAVKRLYDSQSIIKSFELEIMILGQYSHRNIVSLIGFSIEEGNNEKILVYQYMSNGRLSDRLKETKKLEWSKVIKIALGVARGLCCLHHSLHMVHLNINSDCILLGKNFEPKISNFGGIVFMNNDLEKNIGLEKKDVSDFGCLLFEMINEKKFGEIHEYFNNVTVPFVTYPNHVNMLEDDPSGFCDAVDEYLDKIEFEDEEVSTLLRVARECVHPLFEQRPTMLEVYNKICNIGERDRICEDDDLLSMDFVTPNEVDTNMLNMTQ*