Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731140 | Msa1317450 | 0.808000 | 3.838777e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGCAGTGTTAGATTTC+TGG | 0.127374 | 5_1:-41441550 | Msa0731140:CDS |
| TGAAATTACTTTAACTTTGC+TGG | 0.202034 | 5_1:-41439598 | Msa0731140:three_prime_UTR |
| ATTGAAAATGGCATTCCTTT+TGG | 0.317909 | 5_1:-41439665 | Msa0731140:three_prime_UTR |
| TATTGTTTGTACAGCTACTA+TGG | 0.337262 | 5_1:-41439572 | Msa0731140:three_prime_UTR |
| AATCCTGTTTGTATAGTTGT+AGG | 0.390974 | 5_1:-41440993 | Msa0731140:CDS |
| ATAAATTACTTTAACATTGG+TGG | 0.401088 | 5_1:-41441017 | Msa0731140:CDS |
| GTCAAAGCGTTTATAATCTT+AGG | 0.411584 | 5_1:+41441044 | None:intergenic |
| CACATAAATTACTTTAACAT+TGG | 0.412278 | 5_1:-41441020 | Msa0731140:CDS |
| TCTGGCACTTGGCACTTGTA+AGG | 0.413011 | 5_1:-41441532 | Msa0731140:intron |
| AATCCTACAACTATACAAAC+AGG | 0.458695 | 5_1:+41440990 | None:intergenic |
| ATTAGAAATGGCAGTCCTCT+TGG | 0.470406 | 5_1:-41441083 | Msa0731140:intron |
| ACTATGAAGCTTAATTAAGA+TGG | 0.498251 | 5_1:-41439526 | Msa0731140:three_prime_UTR |
| TGTTTGTATAGTTGTAGGAT+TGG | 0.507730 | 5_1:-41440988 | Msa0731140:CDS |
| AGTGTTAGATTTCTGGCACT+TGG | 0.518080 | 5_1:-41441543 | Msa0731140:CDS |
| TAGTTTGCAACAACACCAAA+AGG | 0.524174 | 5_1:+41439650 | None:intergenic |
| CTCATCAATAATCATAGACT+TGG | 0.543201 | 5_1:+41440090 | None:intergenic |
| CAAGTCTATGATTATTGATG+AGG | 0.569020 | 5_1:-41440089 | Msa0731140:intron |
| AACTATTGCTGAGATTGCAA+AGG | 0.621358 | 5_1:-41439632 | Msa0731140:three_prime_UTR |
| GTAGTAACAACAACACCAAG+AGG | 0.695444 | 5_1:+41441068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTACATCAATTTAAATT+AGG | - | chr5_1:41439699-41439718 | Msa0731140:intron | 10.0% |
| !! | AATTGCATAAAATAAATTTA+TGG | + | chr5_1:41439801-41439820 | None:intergenic | 10.0% |
| !!! | TATTTTTCATATTATATTGA+TGG | - | chr5_1:41439970-41439989 | Msa0731140:intron | 10.0% |
| !! | TTCTCTATGATTAAAATTAA+TGG | + | chr5_1:41439894-41439913 | None:intergenic | 15.0% |
| !!! | TAATTTGTATATACACATTT+TGG | - | chr5_1:41439916-41439935 | Msa0731140:intron | 15.0% |
| !!! | TTCAAATTTATGAAATTTTG+TGG | + | chr5_1:41440002-41440021 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTTTCATGTG+AGG | - | chr5_1:41441228-41441247 | Msa0731140:intron | 15.0% |
| !! | TAGTAGTTAATTATTAGAAA+TGG | - | chr5_1:41442210-41442229 | Msa0731140:intron | 15.0% |
| !!! | TTTTCATACATTTAATTGTT+AGG | - | chr5_1:41442765-41442784 | Msa0731140:intron | 15.0% |
| !!! | AATTAGGGTTTTGAAAATTT+GGG | + | chr5_1:41439637-41439656 | None:intergenic | 20.0% |
| !! | GTTGTTAAATAGTATCTTAA+AGG | + | chr5_1:41439944-41439963 | None:intergenic | 20.0% |
| !!! | CCTCTTAATTTTTAAAACAT+AGG | + | chr5_1:41440058-41440077 | None:intergenic | 20.0% |
| !!! | CCTATGTTTTAAAAATTAAG+AGG | - | chr5_1:41440055-41440074 | Msa0731140:intron | 20.0% |
| !!! | GTAAGATTTTATTTAGTAGT+TGG | - | chr5_1:41440124-41440143 | Msa0731140:intron | 20.0% |
| !!! | ATTTTATTTAGTAGTTGGAT+TGG | - | chr5_1:41440129-41440148 | Msa0731140:intron | 20.0% |
| !! | AATAACATAAATAGAGTTAG+AGG | + | chr5_1:41440231-41440250 | None:intergenic | 20.0% |
| !!! | CAGTTGAAATTTTACAATTA+AGG | - | chr5_1:41440353-41440372 | Msa0731140:intron | 20.0% |
| !!! | CTAATAGATTTTCTTTCATA+AGG | - | chr5_1:41440435-41440454 | Msa0731140:intron | 20.0% |
| !! | GAAGAGAAATTAAAAAGTAA+AGG | + | chr5_1:41440640-41440659 | None:intergenic | 20.0% |
| !! | TTTATGATTTACCTAAAAAG+AGG | + | chr5_1:41440923-41440942 | None:intergenic | 20.0% |
| !! | ACTAAAAATATGCAAATTAG+TGG | + | chr5_1:41441291-41441310 | None:intergenic | 20.0% |
| !! | GAGAATTTCTTCAAATTATA+TGG | + | chr5_1:41441506-41441525 | None:intergenic | 20.0% |
| !! | AATTTGAAGAAATTCTCAAT+TGG | - | chr5_1:41441509-41441528 | Msa0731140:intron | 20.0% |
| !! | ACAACAAAATATTTAAGAGA+AGG | - | chr5_1:41441545-41441564 | Msa0731140:CDS | 20.0% |
| !! | CAACAAAATATTTAAGAGAA+GGG | - | chr5_1:41441546-41441565 | Msa0731140:CDS | 20.0% |
| !!! | TTTAAATGTTTCACAAGTTT+TGG | + | chr5_1:41441572-41441591 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTTACTTAGTCTA+TGG | - | chr5_1:41441586-41441605 | Msa0731140:intron | 20.0% |
| !!! | TCACTATAATTTTTACACTT+GGG | - | chr5_1:41441694-41441713 | Msa0731140:intron | 20.0% |
| !! | CAATGGAATATTATTATATC+TGG | + | chr5_1:41441810-41441829 | None:intergenic | 20.0% |
| !! | AATATAGACATATAGAAACA+GGG | + | chr5_1:41441880-41441899 | None:intergenic | 20.0% |
| !! | TGTCTATATTGTATTGAATT+TGG | - | chr5_1:41441890-41441909 | Msa0731140:intron | 20.0% |
| !!! | TTTCTGATTATCTAAGTTTT+AGG | - | chr5_1:41441977-41441996 | Msa0731140:intron | 20.0% |
| !! | CACATAAATTACTTTAACAT+TGG | - | chr5_1:41442285-41442304 | Msa0731140:intron | 20.0% |
| !! | ATAAATTACTTTAACATTGG+TGG | - | chr5_1:41442288-41442307 | Msa0731140:intron | 20.0% |
| !! | AATGTAATAATAGAAAAGAG+TGG | - | chr5_1:41442348-41442367 | Msa0731140:intron | 20.0% |
| !! | ATGTAATAATAGAAAAGAGT+GGG | - | chr5_1:41442349-41442368 | Msa0731140:intron | 20.0% |
| !! | CAAAGACAAATATAAATGTA+AGG | - | chr5_1:41442402-41442421 | Msa0731140:intron | 20.0% |
| !! | CATTAATCTTAAATGGAAAA+AGG | + | chr5_1:41442436-41442455 | None:intergenic | 20.0% |
| !! | TCTTATGCATTAATCTTAAA+TGG | + | chr5_1:41442443-41442462 | None:intergenic | 20.0% |
| !! | AAAAGAAGAATAAAAGAATC+AGG | + | chr5_1:41442826-41442845 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTACTTTTTGTT+GGG | - | chr5_1:41442839-41442858 | Msa0731140:intron | 20.0% |
| !!! | TTTTTTTTTTGAGGGATTAT+AGG | + | chr5_1:41443394-41443413 | None:intergenic | 20.0% |
| !!! | GGATATCTTTTTTTTTTTGA+GGG | + | chr5_1:41443402-41443421 | None:intergenic | 20.0% |
| !!! | TGGATATCTTTTTTTTTTTG+AGG | + | chr5_1:41443403-41443422 | None:intergenic | 20.0% |
| !! | GAATCAAAATATGACAAAAT+AGG | + | chr5_1:41443435-41443454 | None:intergenic | 20.0% |
| ! | TCACATTTAGAAGCAATTAT+AGG | + | chr5_1:41439609-41439628 | None:intergenic | 25.0% |
| !!! | GAATTAGGGTTTTGAAAATT+TGG | + | chr5_1:41439638-41439657 | None:intergenic | 25.0% |
| ! | TTAAATTAGGATTTGTCCAT+TGG | - | chr5_1:41439712-41439731 | Msa0731140:intron | 25.0% |
| !!! | TTTATTTTATGCAATTCGTG+TGG | - | chr5_1:41439805-41439824 | Msa0731140:intron | 25.0% |
| ! | TTAACTTATACTTTGGGTAT+TGG | - | chr5_1:41439828-41439847 | Msa0731140:intron | 25.0% |
| ! | TCTATAACAAAGTAATCTTG+TGG | - | chr5_1:41440023-41440042 | Msa0731140:intron | 25.0% |
| ! | CTAAATAAAATCTTACCAAG+TGG | + | chr5_1:41440120-41440139 | None:intergenic | 25.0% |
| ! | AATTATTGAGCCAAATAACT+TGG | - | chr5_1:41440173-41440192 | Msa0731140:intron | 25.0% |
| !!! | ATCGTTTGTTTTCAAGATAT+TGG | - | chr5_1:41440750-41440769 | Msa0731140:intron | 25.0% |
| ! | TGGTGTAAGAATCTTAATTT+GGG | - | chr5_1:41440869-41440888 | Msa0731140:intron | 25.0% |
| ! | AAGTCATTATTGCAATTTGA+AGG | - | chr5_1:41440941-41440960 | Msa0731140:intron | 25.0% |
| !!! | AAAACTGTTCTGAAAAGAAA+GGG | + | chr5_1:41441030-41441049 | None:intergenic | 25.0% |
| !!! | AAAAACTGTTCTGAAAAGAA+AGG | + | chr5_1:41441031-41441050 | None:intergenic | 25.0% |
| ! | ATTAAACCTTTCTTATGTAC+TGG | - | chr5_1:41441167-41441186 | Msa0731140:intron | 25.0% |
| ! | ATACATACATTCACAAAAAG+TGG | + | chr5_1:41441207-41441226 | None:intergenic | 25.0% |
| ! | ATTAAACTAGAGTAACTAGT+TGG | + | chr5_1:41441451-41441470 | None:intergenic | 25.0% |
| !!! | CTCTTAAATATTTTGTTGTG+AGG | + | chr5_1:41441544-41441563 | None:intergenic | 25.0% |
| !! | CTCACTATAATTTTTACACT+TGG | - | chr5_1:41441693-41441712 | Msa0731140:intron | 25.0% |
| ! | ACATCACATTAAAGTAACAA+TGG | + | chr5_1:41441827-41441846 | None:intergenic | 25.0% |
| ! | TTACTATTACATGTGCAATT+TGG | - | chr5_1:41441852-41441871 | Msa0731140:intron | 25.0% |
| ! | TACTATTACATGTGCAATTT+GGG | - | chr5_1:41441853-41441872 | Msa0731140:intron | 25.0% |
| ! | CAATATAGACATATAGAAAC+AGG | + | chr5_1:41441881-41441900 | None:intergenic | 25.0% |
| !!! | CCATAAATGTCTTATTTGTA+GGG | + | chr5_1:41442138-41442157 | None:intergenic | 25.0% |
| !!! | ACCATAAATGTCTTATTTGT+AGG | + | chr5_1:41442139-41442158 | None:intergenic | 25.0% |
| ! | TGTAATAATAGAAAAGAGTG+GGG | - | chr5_1:41442350-41442369 | Msa0731140:intron | 25.0% |
| !!! | CTTCTTTTTCTACTTTTTGT+TGG | - | chr5_1:41442838-41442857 | Msa0731140:intron | 25.0% |
| ! | ATGAAACAACAAGATAAAAC+AGG | + | chr5_1:41442867-41442886 | None:intergenic | 25.0% |
| ! | TATTATGCAACCAAACAAAT+AGG | + | chr5_1:41442938-41442957 | None:intergenic | 25.0% |
| !! | GTTAGTTTCATCAATTGTTA+TGG | - | chr5_1:41443290-41443309 | Msa0731140:intron | 25.0% |
| ! | AATTGTTATGGTATGACTTA+TGG | - | chr5_1:41443302-41443321 | Msa0731140:intron | 25.0% |
| ! | ATTGTTATGGTATGACTTAT+GGG | - | chr5_1:41443303-41443322 | Msa0731140:intron | 25.0% |
| ! | CAATAATGAACATAATTGTC+TGG | + | chr5_1:41443585-41443604 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTGAATTTGCTTT+TGG | - | chr5_1:41443611-41443630 | Msa0731140:intron | 25.0% |
| !! | TGAAATTACTTTAACTTTGC+TGG | - | chr5_1:41443707-41443726 | Msa0731140:intron | 25.0% |
| ! | ACTATGAAGCTTAATTAAGA+TGG | - | chr5_1:41443779-41443798 | Msa0731140:intron | 25.0% |
| TGGAACGAAATTGAGAATTA+GGG | + | chr5_1:41439652-41439671 | None:intergenic | 30.0% | |
| TTGGAACGAAATTGAGAATT+AGG | + | chr5_1:41439653-41439672 | None:intergenic | 30.0% | |
| ! | TCATGTTTTGCTTCTGTTTT+TGG | - | chr5_1:41439675-41439694 | Msa0731140:intron | 30.0% |
| GTGTGGTTAACTTATACTTT+GGG | - | chr5_1:41439822-41439841 | Msa0731140:intron | 30.0% | |
| TACCTTTAAGCCAAGTTATT+TGG | + | chr5_1:41440186-41440205 | None:intergenic | 30.0% | |
| ! | GATATGACTTCTAAGAAACT+TGG | + | chr5_1:41440258-41440277 | None:intergenic | 30.0% |
| TTAGAAGTCATATCAGTCTT+TGG | - | chr5_1:41440264-41440283 | Msa0731140:intron | 30.0% | |
| !!! | CATATCAGTCTTTGGTTTTA+TGG | - | chr5_1:41440272-41440291 | Msa0731140:intron | 30.0% |
| GCAAATTGTTGCATTAACAA+GGG | + | chr5_1:41440536-41440555 | None:intergenic | 30.0% | |
| AGCAAATTGTTGCATTAACA+AGG | + | chr5_1:41440537-41440556 | None:intergenic | 30.0% | |
| !!! | TTTTAGCTTCTCTGCATTAT+TGG | - | chr5_1:41440596-41440615 | Msa0731140:intron | 30.0% |
| !! | TTCTAGTTTCTCTGCATTAT+TGG | - | chr5_1:41440694-41440713 | Msa0731140:intron | 30.0% |
| TTCTTACACCAGATTGATAT+GGG | + | chr5_1:41440860-41440879 | None:intergenic | 30.0% | |
| ATTCTTACACCAGATTGATA+TGG | + | chr5_1:41440861-41440880 | None:intergenic | 30.0% | |
| CTGGTGTAAGAATCTTAATT+TGG | - | chr5_1:41440868-41440887 | Msa0731140:intron | 30.0% | |
| ! | TTCTTCTATGTCCTCTTTTT+AGG | - | chr5_1:41440909-41440928 | Msa0731140:intron | 30.0% |
| !! | ATGAAGATCATTTGGTGTTT+GGG | + | chr5_1:41440980-41440999 | None:intergenic | 30.0% |
| TGATGAAGATGAAGATCATT+TGG | + | chr5_1:41440988-41441007 | None:intergenic | 30.0% | |
| !! | AAACTGTTCTGAAAAGAAAG+GGG | + | chr5_1:41441029-41441048 | None:intergenic | 30.0% |
| ! | TATTTTACACCTGTTGTTCT+CGG | - | chr5_1:41441125-41441144 | Msa0731140:intron | 30.0% |
| TATCTTCCAGTACATAAGAA+AGG | + | chr5_1:41441176-41441195 | None:intergenic | 30.0% | |
| TTAAACTAGTTGCTAACAAG+TGG | - | chr5_1:41441362-41441381 | Msa0731140:intron | 30.0% | |
| ATGACTTACTAGCAATTAGT+TGG | + | chr5_1:41441398-41441417 | None:intergenic | 30.0% | |
| !! | TATTTTGTTGTGAGGATTTC+AGG | + | chr5_1:41441536-41441555 | None:intergenic | 30.0% |
| GTTTACTTAGTCTATGGTAA+AGG | - | chr5_1:41441592-41441611 | Msa0731140:intron | 30.0% | |
| GTAAAAATTATAGTGAGCTG+TGG | + | chr5_1:41441690-41441709 | None:intergenic | 30.0% | |
| ! | AATTTGGAATGACATGTCTT+TGG | - | chr5_1:41441906-41441925 | Msa0731140:intron | 30.0% |
| TATCTTGTTCTCTGTTATTG+TGG | - | chr5_1:41441954-41441973 | Msa0731140:intron | 30.0% | |
| TGGAAAGAACAAAACAAGTT+AGG | + | chr5_1:41442008-41442027 | None:intergenic | 30.0% | |
| CCCTACAAATAAGACATTTA+TGG | - | chr5_1:41442135-41442154 | Msa0731140:intron | 30.0% | |
| ! | GTCAAAGCGTTTATAATCTT+AGG | + | chr5_1:41442264-41442283 | None:intergenic | 30.0% |
| AATCCTGTTTGTATAGTTGT+AGG | - | chr5_1:41442312-41442331 | Msa0731140:intron | 30.0% | |
| AATCCTACAACTATACAAAC+AGG | + | chr5_1:41442318-41442337 | None:intergenic | 30.0% | |
| TGTTTGTATAGTTGTAGGAT+TGG | - | chr5_1:41442317-41442336 | Msa0731140:intron | 30.0% | |
| TCGTACAAATTCTGATTCTT+AGG | + | chr5_1:41442542-41442561 | None:intergenic | 30.0% | |
| AAGAATCAGAATTTGTACGA+TGG | - | chr5_1:41442542-41442561 | Msa0731140:intron | 30.0% | |
| ATGTCTCTATTCAAAGCTAT+TGG | - | chr5_1:41442600-41442619 | Msa0731140:intron | 30.0% | |
| ! | AACATTTTACAACTCATAGC+AGG | + | chr5_1:41442627-41442646 | None:intergenic | 30.0% |
| GCTATGAGTTGTAAAATGTT+AGG | - | chr5_1:41442627-41442646 | Msa0731140:intron | 30.0% | |
| GAATAAAAGAATCAGGAATG+TGG | + | chr5_1:41442819-41442838 | None:intergenic | 30.0% | |
| !!! | GATCTTCTGCTATTTTTTTC+TGG | - | chr5_1:41442958-41442977 | Msa0731140:intron | 30.0% |
| !!! | TTCTGCTATTTTTTTCTGGT+GGG | - | chr5_1:41442962-41442981 | Msa0731140:intron | 30.0% |
| !! | TGTTTTTCTGGTGTATCATT+TGG | - | chr5_1:41443019-41443038 | Msa0731140:intron | 30.0% |
| TAATAAACACAATGAGCTGA+AGG | + | chr5_1:41443063-41443082 | None:intergenic | 30.0% | |
| CTCATTGTGTTTATTATTGC+AGG | - | chr5_1:41443067-41443086 | Msa0731140:intron | 30.0% | |
| !! | TATTGCAGGACTTTTGTTTA+AGG | - | chr5_1:41443081-41443100 | Msa0731140:intron | 30.0% |
| !! | TTGTGGCTAATTTGTTACAT+GGG | - | chr5_1:41443147-41443166 | Msa0731140:intron | 30.0% |
| AAATTTGATTCCATGTAGGT+TGG | - | chr5_1:41443170-41443189 | Msa0731140:intron | 30.0% | |
| CTCATCAATAATCATAGACT+TGG | + | chr5_1:41443218-41443237 | None:intergenic | 30.0% | |
| CAAGTCTATGATTATTGATG+AGG | - | chr5_1:41443216-41443235 | Msa0731140:intron | 30.0% | |
| GACAAAATAGGATGCTTTAT+TGG | + | chr5_1:41443423-41443442 | None:intergenic | 30.0% | |
| AAACTACTTGGCAACTATAA+AGG | + | chr5_1:41443469-41443488 | None:intergenic | 30.0% | |
| AGAGCAAGTAATAAACTACT+TGG | + | chr5_1:41443481-41443500 | None:intergenic | 30.0% | |
| TATTCTTTGGCATATACAGT+TGG | + | chr5_1:41443559-41443578 | None:intergenic | 30.0% | |
| AATTGTCTGGAGATATTCTT+TGG | + | chr5_1:41443572-41443591 | None:intergenic | 30.0% | |
| ! | ATTGAAAATGGCATTCCTTT+TGG | - | chr5_1:41443640-41443659 | Msa0731140:intron | 30.0% |
| TATTGTTTGTACAGCTACTA+TGG | - | chr5_1:41443733-41443752 | Msa0731140:intron | 30.0% | |
| ! | ACTGTGCTTCATCACATTTT+GGG | - | chr5_1:41439572-41439591 | Msa0731140:three_prime_UTR | 35.0% |
| ACAGAAGCAAAACATGAGAT+TGG | + | chr5_1:41439672-41439691 | None:intergenic | 35.0% | |
| CGTGTGGTTAACTTATACTT+TGG | - | chr5_1:41439821-41439840 | Msa0731140:intron | 35.0% | |
| AGAGGCTTATGATACACTTT+CGG | - | chr5_1:41440073-41440092 | Msa0731140:intron | 35.0% | |
| !! | ACCAAATAGCTTTATCCACT+TGG | - | chr5_1:41440102-41440121 | Msa0731140:CDS | 35.0% |
| ACCAAGTGGATAAAGCTATT+TGG | + | chr5_1:41440106-41440125 | None:intergenic | 35.0% | |
| AGCCAAATAACTTGGCTTAA+AGG | - | chr5_1:41440181-41440200 | Msa0731140:intron | 35.0% | |
| ATCTTGATGAGTGAAGTACA+CGG | - | chr5_1:41440329-41440348 | Msa0731140:intron | 35.0% | |
| AATTAAGGAGTAGTGCATCA+GGG | - | chr5_1:41440368-41440387 | Msa0731140:intron | 35.0% | |
| TAAGGACAATGCACATACTT+TGG | - | chr5_1:41440453-41440472 | Msa0731140:intron | 35.0% | |
| TGCAGAGAAACTAGAATGTA+AGG | + | chr5_1:41440690-41440709 | None:intergenic | 35.0% | |
| ! | TGTTAATGCTTGCTACTGTT+TGG | - | chr5_1:41440782-41440801 | Msa0731140:intron | 35.0% |
| TCTTACACCAGATTGATATG+GGG | + | chr5_1:41440859-41440878 | None:intergenic | 35.0% | |
| !! | GATGAAGATCATTTGGTGTT+TGG | + | chr5_1:41440981-41441000 | None:intergenic | 35.0% |
| CTTTAGCAGTGTTAGATTTC+TGG | - | chr5_1:41441755-41441774 | Msa0731140:intron | 35.0% | |
| ! | ATCAAGGCACTCTTTCAAAT+GGG | + | chr5_1:41442377-41442396 | None:intergenic | 35.0% |
| ATTTGTCTTTGAGTGCATCA+AGG | + | chr5_1:41442393-41442412 | None:intergenic | 35.0% | |
| TTATAGAGAGAGCGACATAA+TGG | - | chr5_1:41442480-41442499 | Msa0731140:intron | 35.0% | |
| ! | ATGGAGTTGCACTTTTCTAA+TGG | - | chr5_1:41442561-41442580 | Msa0731140:intron | 35.0% |
| !!! | CTTCTGCTATTTTTTTCTGG+TGG | - | chr5_1:41442961-41442980 | Msa0731140:intron | 35.0% |
| !!! | TCTGCTATTTTTTTCTGGTG+GGG | - | chr5_1:41442963-41442982 | Msa0731140:intron | 35.0% |
| !! | CACAACTCTGTTTGTTTTTC+TGG | - | chr5_1:41443007-41443026 | Msa0731140:intron | 35.0% |
| !! | GTTGTGGCTAATTTGTTACA+TGG | - | chr5_1:41443146-41443165 | Msa0731140:intron | 35.0% |
| TGGGAAATTTGATTCCATGT+AGG | - | chr5_1:41443166-41443185 | Msa0731140:intron | 35.0% | |
| TATTATCACTCCAACCTACA+TGG | + | chr5_1:41443183-41443202 | None:intergenic | 35.0% | |
| !! | TTCTTGAATTTGCTTTTGGC+AGG | - | chr5_1:41443615-41443634 | Msa0731140:intron | 35.0% |
| !! | TCTTGAATTTGCTTTTGGCA+GGG | - | chr5_1:41443616-41443635 | Msa0731140:intron | 35.0% |
| !!! | TTTTGGCAGGGTATTGAAAA+TGG | - | chr5_1:41443628-41443647 | Msa0731140:intron | 35.0% |
| ! | TAGTTTGCAACAACACCAAA+AGG | + | chr5_1:41443658-41443677 | None:intergenic | 35.0% |
| AACTATTGCTGAGATTGCAA+AGG | - | chr5_1:41443673-41443692 | Msa0731140:intron | 35.0% | |
| !! | TGAGTTGTTGTTTCATCCAC+CGG | - | chr5_1:41439509-41439528 | Msa0731140:three_prime_UTR | 40.0% |
| TGTGATGAAGCACAGTGTTA+CGG | + | chr5_1:41439568-41439587 | None:intergenic | 40.0% | |
| ! | CACTGTGCTTCATCACATTT+TGG | - | chr5_1:41439571-41439590 | Msa0731140:three_prime_UTR | 40.0% |
| CAATTAAGGAGTAGTGCATC+AGG | - | chr5_1:41440367-41440386 | Msa0731140:intron | 40.0% | |
| ATGACAACCCCATATCAATC+TGG | - | chr5_1:41440849-41440868 | Msa0731140:intron | 40.0% | |
| !! | ATTTGGTGTTTGGGTACATG+TGG | + | chr5_1:41440971-41440990 | None:intergenic | 40.0% |
| TGAACCTCTTATGTACTCGA+AGG | - | chr5_1:41441259-41441278 | Msa0731140:intron | 40.0% | |
| ACAACCTTCGAGTACATAAG+AGG | + | chr5_1:41441266-41441285 | None:intergenic | 40.0% | |
| ATTGACAACCTGCAACAAGA+TGG | + | chr5_1:41441720-41441739 | None:intergenic | 40.0% | |
| !! | AGTGTTAGATTTCTGGCACT+TGG | - | chr5_1:41441762-41441781 | Msa0731140:intron | 40.0% |
| TAGGGTCAACTGTAGTGATA+AGG | + | chr5_1:41442120-41442139 | None:intergenic | 40.0% | |
| ATTAGAAATGGCAGTCCTCT+TGG | - | chr5_1:41442222-41442241 | Msa0731140:intron | 40.0% | |
| GTAGTAACAACAACACCAAG+AGG | + | chr5_1:41442240-41442259 | None:intergenic | 40.0% | |
| ! | CATCAAGGCACTCTTTCAAA+TGG | + | chr5_1:41442378-41442397 | None:intergenic | 40.0% |
| ! | GCGACATAATGGAGAACAAA+AGG | - | chr5_1:41442491-41442510 | Msa0731140:intron | 40.0% |
| ATTGTTGTGCATCTAGTTGC+AGG | - | chr5_1:41442885-41442904 | Msa0731140:intron | 40.0% | |
| CTAGTTGCAGGATTCAAAAG+TGG | - | chr5_1:41442897-41442916 | Msa0731140:intron | 40.0% | |
| TTCTGGTGTATCATTTGGAG+AGG | - | chr5_1:41443024-41443043 | Msa0731140:intron | 40.0% | |
| TCTGGTGTATCATTTGGAGA+GGG | - | chr5_1:41443025-41443044 | Msa0731140:intron | 40.0% | |
| TTTGGAGAGGGTAATTTCTG+TGG | - | chr5_1:41443037-41443056 | Msa0731140:intron | 40.0% | |
| ! | TCCATTGGTAGCAACAGAAG+AGG | - | chr5_1:41439727-41439746 | Msa0731140:intron | 45.0% |
| ! | CCATTGGTAGCAACAGAAGA+GGG | - | chr5_1:41439728-41439747 | Msa0731140:intron | 45.0% |
| AACAGAAGAGGGAAAGGACT+TGG | - | chr5_1:41439739-41439758 | Msa0731140:intron | 45.0% | |
| !! | GTTCTGAAAAGAAAGGGGTG+AGG | + | chr5_1:41441024-41441043 | None:intergenic | 45.0% |
| ! | CAAGACAAGAAGTGCAAGCA+TGG | + | chr5_1:41442028-41442047 | None:intergenic | 45.0% |
| !!! | GGCGATTATGTTTTGGTGCT+TGG | - | chr5_1:41442984-41443003 | Msa0731140:intron | 45.0% |
| AATGGAGAGGACGGTAGAAG+CGG | + | chr5_1:41439537-41439556 | None:intergenic | 50.0% | |
| CTTCTACCGTCCTCTCCATT+AGG | - | chr5_1:41439537-41439556 | Msa0731140:three_prime_UTR | 50.0% | |
| AGTGTTACGGCCTGACCTAA+TGG | + | chr5_1:41439555-41439574 | None:intergenic | 50.0% | |
| CCCTCTTCTGTTGCTACCAA+TGG | + | chr5_1:41439731-41439750 | None:intergenic | 50.0% | |
| GGTAGCAACAGAAGAGGGAA+AGG | - | chr5_1:41439733-41439752 | Msa0731140:intron | 50.0% | |
| ACACCTGTTGTTCTCGGAAG+AGG | - | chr5_1:41441131-41441150 | Msa0731140:intron | 50.0% | |
| CACCTGTTGTTCTCGGAAGA+GGG | - | chr5_1:41441132-41441151 | Msa0731140:intron | 50.0% | |
| TACCCTCTTCCGAGAACAAC+AGG | + | chr5_1:41441137-41441156 | None:intergenic | 50.0% | |
| GTTGTTCTCGGAAGAGGGTA+AGG | - | chr5_1:41441137-41441156 | Msa0731140:intron | 50.0% | |
| TCTGGCACTTGGCACTTGTA+AGG | - | chr5_1:41441773-41441792 | Msa0731140:intron | 50.0% | |
| ! | CTGGTGGGGCGATTATGTTT+TGG | - | chr5_1:41442977-41442996 | Msa0731140:intron | 50.0% |
| TCCCTCTTCTCTCATCGTTG+TGG | - | chr5_1:41443130-41443149 | Msa0731140:intron | 50.0% | |
| GCCACAACGATGAGAGAAGA+GGG | + | chr5_1:41443134-41443153 | None:intergenic | 50.0% | |
| AGCCACAACGATGAGAGAAG+AGG | + | chr5_1:41443135-41443154 | None:intergenic | 50.0% | |
| ACCGTCCTCTCCATTAGGTC+AGG | - | chr5_1:41439542-41439561 | Msa0731140:three_prime_UTR | 55.0% | |
| GCCTGACCTAATGGAGAGGA+CGG | + | chr5_1:41439546-41439565 | None:intergenic | 55.0% | |
| TACGGCCTGACCTAATGGAG+AGG | + | chr5_1:41439550-41439569 | None:intergenic | 55.0% | |
| GGAGTAGTGCATCAGGGCAT+TGG | - | chr5_1:41440374-41440393 | Msa0731140:intron | 55.0% | |
| CACTTGGGCCATCTTGTTGC+AGG | - | chr5_1:41441709-41441728 | Msa0731140:intron | 55.0% | |
| GTGCGCGTCGCCTATTTGTT+TGG | - | chr5_1:41442925-41442944 | Msa0731140:intron | 55.0% | |
| GAGGACGGTAGAAGCGGTTC+CGG | + | chr5_1:41439531-41439550 | None:intergenic | 60.0% | |
| GACGGTAGAAGCGGTTCCGG+TGG | + | chr5_1:41439528-41439547 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 41439508 | 41443819 | 41439508 | ID=Msa0731140;Name=Msa0731140 |
| chr5_1 | mRNA | 41439508 | 41443819 | 41439508 | ID=Msa0731140-mRNA-1;Parent=Msa0731140;Name=Msa0731140-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0|0.25|0.6|1|0.25|0.4|5|194|73 |
| chr5_1 | exon | 41439508 | 41439690 | 41439508 | ID=Msa0731140-mRNA-1:exon:12052;Parent=Msa0731140-mRNA-1 |
| chr5_1 | exon | 41440090 | 41440139 | 41440090 | ID=Msa0731140-mRNA-1:exon:12051;Parent=Msa0731140-mRNA-1 |
| chr5_1 | exon | 41440977 | 41441091 | 41440977 | ID=Msa0731140-mRNA-1:exon:12050;Parent=Msa0731140-mRNA-1 |
| chr5_1 | exon | 41441533 | 41441596 | 41441533 | ID=Msa0731140-mRNA-1:exon:12049;Parent=Msa0731140-mRNA-1 |
| chr5_1 | exon | 41443816 | 41443819 | 41443816 | ID=Msa0731140-mRNA-1:exon:12048;Parent=Msa0731140-mRNA-1 |
| chr5_1 | CDS | 41443816 | 41443819 | 41443816 | ID=Msa0731140-mRNA-1:cds;Parent=Msa0731140-mRNA-1 |
| chr5_1 | CDS | 41441533 | 41441596 | 41441533 | ID=Msa0731140-mRNA-1:cds;Parent=Msa0731140-mRNA-1 |
| chr5_1 | CDS | 41440977 | 41441091 | 41440977 | ID=Msa0731140-mRNA-1:cds;Parent=Msa0731140-mRNA-1 |
| chr5_1 | CDS | 41440101 | 41440139 | 41440101 | ID=Msa0731140-mRNA-1:cds;Parent=Msa0731140-mRNA-1 |
| chr5_1 | three_prime_UTR | 41440090 | 41440100 | 41440090 | ID=Msa0731140-mRNA-1:three_prime_utr;Parent=Msa0731140-mRNA-1 |
| chr5_1 | three_prime_UTR | 41439508 | 41439690 | 41439508 | ID=Msa0731140-mRNA-1:three_prime_utr;Parent=Msa0731140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
