Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731750 | XP_013454044.1 | 90.252 | 318 | 16 | 1 | 1 | 318 | 1 | 303 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731750 | sp|Q1LZ86|ABHD6_BOVIN | 23.411 | 299 | 180 | 14 | 39 | 318 | 61 | 329 | 9.19e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731750 | A0A072UQE1 | 90.252 | 318 | 16 | 1 | 1 | 318 | 1 | 303 | 0.0 | 594 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731750 | Msa0850570 | 0.847076 | 1.453314e-59 | -8.615850e-47 |
| Msa0731750 | Msa1248400 | 0.800435 | 1.443071e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731750 | MtrunA17_Chr5g0426241 | 90.252 | 318 | 16 | 1 | 1 | 318 | 1 | 303 | 0.0 | 594 |
| Msa0731750 | MtrunA17_Chr2g0279171 | 55.346 | 318 | 124 | 3 | 2 | 318 | 6 | 306 | 2.38e-127 | 367 |
| Msa0731750 | MtrunA17_Chr3g0123881 | 54.633 | 313 | 125 | 2 | 2 | 314 | 4 | 299 | 3.29e-125 | 360 |
| Msa0731750 | MtrunA17_Chr3g0136411 | 37.582 | 306 | 169 | 7 | 12 | 313 | 13 | 300 | 2.38e-62 | 200 |
| Msa0731750 | MtrunA17_Chr8g0381981 | 53.988 | 163 | 71 | 2 | 158 | 318 | 1 | 161 | 6.52e-54 | 174 |
| Msa0731750 | MtrunA17_Chr8g0382001 | 55.970 | 134 | 59 | 0 | 1 | 134 | 1 | 134 | 8.94e-54 | 172 |
| Msa0731750 | MtrunA17_Chr5g0404211 | 33.117 | 308 | 179 | 7 | 13 | 313 | 9 | 296 | 4.30e-52 | 173 |
| Msa0731750 | MtrunA17_Chr8g0373201 | 30.449 | 312 | 172 | 6 | 22 | 313 | 19 | 305 | 1.97e-44 | 154 |
| Msa0731750 | MtrunA17_Chr5g0404141 | 29.221 | 308 | 178 | 6 | 22 | 313 | 19 | 302 | 1.25e-42 | 149 |
| Msa0731750 | MtrunA17_Chr5g0404161 | 30.189 | 212 | 128 | 4 | 12 | 211 | 23 | 226 | 2.04e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731750 | AT5G09430.1 | 55.452 | 321 | 121 | 3 | 1 | 316 | 7 | 310 | 2.70e-128 | 369 |
| Msa0731750 | AT1G78210.1 | 54.088 | 318 | 130 | 2 | 1 | 316 | 1 | 304 | 3.15e-126 | 363 |
| Msa0731750 | AT4G39955.1 | 53.185 | 314 | 129 | 3 | 1 | 313 | 1 | 297 | 7.90e-124 | 358 |
| Msa0731750 | AT5G21950.1 | 39.016 | 305 | 161 | 7 | 16 | 314 | 17 | 302 | 4.82e-62 | 199 |
| Msa0731750 | AT5G21950.6 | 39.016 | 305 | 161 | 7 | 16 | 314 | 69 | 354 | 1.95e-61 | 199 |
| Msa0731750 | AT5G21950.7 | 38.662 | 269 | 140 | 7 | 16 | 278 | 17 | 266 | 7.25e-53 | 175 |
| Msa0731750 | AT1G72620.1 | 37.838 | 296 | 160 | 9 | 24 | 314 | 56 | 332 | 7.88e-52 | 174 |
| Msa0731750 | AT4G33180.1 | 34.740 | 308 | 176 | 8 | 16 | 316 | 18 | 307 | 9.60e-52 | 173 |
| Msa0731750 | AT1G17430.1 | 37.171 | 304 | 157 | 9 | 24 | 316 | 52 | 332 | 1.43e-51 | 173 |
| Msa0731750 | AT2G18360.1 | 31.310 | 313 | 179 | 5 | 22 | 318 | 19 | 311 | 1.61e-49 | 167 |
| Msa0731750 | AT4G36610.1 | 29.904 | 311 | 184 | 5 | 22 | 318 | 19 | 309 | 1.55e-45 | 157 |
| Msa0731750 | AT5G21950.3 | 39.409 | 203 | 116 | 3 | 16 | 214 | 17 | 216 | 8.61e-43 | 147 |
| Msa0731750 | AT5G21950.2 | 39.409 | 203 | 116 | 3 | 16 | 214 | 17 | 216 | 8.61e-43 | 147 |
| Msa0731750 | AT5G21950.5 | 39.409 | 203 | 116 | 3 | 16 | 214 | 69 | 268 | 2.56e-42 | 147 |
| Msa0731750 | AT5G21950.4 | 39.409 | 203 | 116 | 3 | 16 | 214 | 69 | 268 | 2.56e-42 | 147 |
| Msa0731750 | AT2G18360.2 | 30.292 | 274 | 155 | 5 | 22 | 279 | 19 | 272 | 3.72e-41 | 144 |
| Msa0731750 | AT4G33180.2 | 36.275 | 204 | 121 | 5 | 16 | 213 | 18 | 218 | 2.24e-34 | 125 |
Find 121 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTCTTCCGTTCTTT+CGG | 0.143721 | 5_1:-43221260 | None:intergenic |
| TGAAATTCTTCCGTTCTTTC+GGG | 0.171977 | 5_1:-43221259 | None:intergenic |
| GATTTGAATCACAGGCATTT+AGG | 0.187250 | 5_1:+43222930 | Msa0731750:intron |
| TGCAGCCTACATTAATTATC+TGG | 0.212400 | 5_1:+43222779 | Msa0731750:intron |
| ACCAGAGCTTATATCTATTA+TGG | 0.217883 | 5_1:+43223919 | Msa0731750:three_prime_UTR |
| GTTATTTCCTGTTTCTGATT+TGG | 0.256321 | 5_1:+43221459 | Msa0731750:CDS |
| GGATGAAGCTGCTAATATTT+TGG | 0.259695 | 5_1:+43221480 | Msa0731750:CDS |
| GTTGAATTTGGTTTGGAGTT+TGG | 0.270665 | 5_1:-43220807 | None:intergenic |
| CAAGTATTCCCTTTGGAACT+TGG | 0.312549 | 5_1:+43222814 | Msa0731750:CDS |
| ATTTGTCTACCATAGTATTC+AGG | 0.318296 | 5_1:+43222297 | Msa0731750:CDS |
| ATGAGTGGTGAAGTTGAATT+TGG | 0.328096 | 5_1:-43220819 | None:intergenic |
| CGCCAATGCTCTATGGCAAT+GGG | 0.329939 | 5_1:+43221153 | Msa0731750:CDS |
| AAATGAACCTGAGATATCTT+AGG | 0.334634 | 5_1:-43222539 | None:intergenic |
| ATTTGAATCACAGGCATTTA+GGG | 0.337555 | 5_1:+43222931 | Msa0731750:intron |
| GCCTCGGCGCCAATGCTCTA+TGG | 0.341806 | 5_1:+43221146 | Msa0731750:CDS |
| ATTTCATAATGAGGACAAAA+AGG | 0.342856 | 5_1:+43223831 | Msa0731750:three_prime_UTR |
| GTGGAGAAGGTTGTGATTTG+TGG | 0.347811 | 5_1:+43221397 | Msa0731750:CDS |
| TTGGTGAAAGATATGGATTA+AGG | 0.358938 | 5_1:-43220701 | None:intergenic |
| TTGTGGATCAGGGGTGAGTT+TGG | 0.359651 | 5_1:+43221414 | Msa0731750:CDS |
| GGGTTTGTAGCGTATAGTTT+AGG | 0.371628 | 5_1:+43221355 | Msa0731750:CDS |
| AATTATGTTAAGTGAAGATA+TGG | 0.373315 | 5_1:+43224049 | Msa0731750:three_prime_UTR |
| GGTTTGGGTTTGATTCTGTT+CGG | 0.381186 | 5_1:-43221108 | None:intergenic |
| GTGAGGAATGTGAGTGTTGT+GGG | 0.383177 | 5_1:+43221319 | Msa0731750:CDS |
| GTTTGGGTTTGATTCTGTTC+GGG | 0.384223 | 5_1:-43221107 | None:intergenic |
| CCGTGGATTAAGAGTAGGTT+TGG | 0.385168 | 5_1:-43221124 | None:intergenic |
| CTAGTTAAGTTTCAGATAGA+AGG | 0.390848 | 5_1:+43223860 | Msa0731750:three_prime_UTR |
| AGAGAGATTGGTGAAAGATA+TGG | 0.398749 | 5_1:-43220708 | None:intergenic |
| AGCTTATATCTATTATGGTT+AGG | 0.398990 | 5_1:+43223924 | Msa0731750:three_prime_UTR |
| AAGGTTGTGATTTGTGGATC+AGG | 0.400067 | 5_1:+43221403 | Msa0731750:CDS |
| TTCTTCCGTTCTTTCGGGTC+GGG | 0.401004 | 5_1:-43221254 | None:intergenic |
| TATCTTGAAGTCCTTTCTAC+TGG | 0.409707 | 5_1:+43223028 | Msa0731750:CDS |
| TTCGGCCACATCGTTTGGCT+TGG | 0.410504 | 5_1:+43221551 | Msa0731750:CDS |
| TTAAATAATATTGATTTATG+TGG | 0.414564 | 5_1:-43220526 | None:intergenic |
| TGTGAAGTATAAAGAGTTTG+TGG | 0.429449 | 5_1:+43221378 | Msa0731750:CDS |
| GCTTATATCTATTATGGTTA+GGG | 0.432820 | 5_1:+43223925 | Msa0731750:three_prime_UTR |
| TTCTGTCCTTTGCAATGGCT+CGG | 0.437711 | 5_1:-43222502 | None:intergenic |
| ACGGAACAATAATGCATTGT+TGG | 0.437761 | 5_1:+43221074 | Msa0731750:CDS |
| GTTTAACTGAAACAAGAAAC+TGG | 0.439521 | 5_1:+43220993 | Msa0731750:CDS |
| TTGTGGGGTTGAGTTATGGT+GGG | 0.442930 | 5_1:+43221335 | Msa0731750:CDS |
| AGTGTTGTGGGGTTGAGTTA+TGG | 0.443139 | 5_1:+43221331 | Msa0731750:CDS |
| ATATTTCGTCACGTGTTCAA+TGG | 0.444585 | 5_1:-43220662 | None:intergenic |
| ACTGAAACACTGTGTCATAC+TGG | 0.448443 | 5_1:-43220972 | None:intergenic |
| TATGGATTAAGGGAGCAATA+TGG | 0.448740 | 5_1:-43220690 | None:intergenic |
| GTTGTGGGGTTGAGTTATGG+TGG | 0.450760 | 5_1:+43221334 | Msa0731750:CDS |
| GCGCCAATGCTCTATGGCAA+TGG | 0.450793 | 5_1:+43221152 | Msa0731750:CDS |
| TAACATGCTCCTGAATACTA+TGG | 0.451741 | 5_1:-43222306 | None:intergenic |
| GAAGAGAAGGATATTAGAGA+AGG | 0.455398 | 5_1:+43221436 | Msa0731750:CDS |
| GCTTCATCCAAATCAGAAAC+AGG | 0.455482 | 5_1:-43221466 | None:intergenic |
| GAGCATTGGCGCCGAGGCCG+TGG | 0.456989 | 5_1:-43221141 | None:intergenic |
| CACAAACTCCACAAAAGCTT+AGG | 0.460472 | 5_1:+43221506 | Msa0731750:CDS |
| ATTTGAACTAAGACTTGATC+GGG | 0.463700 | 5_1:-43223075 | None:intergenic |
| TGGTGAAAGATATGGATTAA+GGG | 0.467654 | 5_1:-43220700 | None:intergenic |
| AATGAACCTGAGATATCTTA+GGG | 0.467659 | 5_1:-43222538 | None:intergenic |
| ACATGATCAAGTATTCCCTT+TGG | 0.471964 | 5_1:+43222807 | Msa0731750:CDS |
| GTATAAAGAGTTTGTGGAGA+AGG | 0.472110 | 5_1:+43221384 | Msa0731750:CDS |
| TGGTGAAGTTGAATTTGGTT+TGG | 0.477919 | 5_1:-43220814 | None:intergenic |
| CGTGGATTAAGAGTAGGTTT+GGG | 0.478070 | 5_1:-43221123 | None:intergenic |
| GTGCTACCGGTCAACATTCA+CGG | 0.479584 | 5_1:+43221015 | Msa0731750:CDS |
| GCAGCCTACATTAATTATCT+GGG | 0.481732 | 5_1:+43222780 | Msa0731750:intron |
| TGACCTCCCTAAGATATCTC+AGG | 0.482755 | 5_1:+43222532 | Msa0731750:CDS |
| AGGGGTGAGTTTGGAAGAGA+AGG | 0.483774 | 5_1:+43221423 | Msa0731750:CDS |
| CGGTCAACATTCACGGGTGC+AGG | 0.494642 | 5_1:+43221022 | Msa0731750:CDS |
| ATTCTTCCGTTCTTTCGGGT+CGG | 0.496383 | 5_1:-43221255 | None:intergenic |
| AACTTACATGAATGAAATCA+TGG | 0.500805 | 5_1:-43221591 | None:intergenic |
| AGGTTGTGATTTGTGGATCA+GGG | 0.502586 | 5_1:+43221404 | Msa0731750:CDS |
| GTTCAAATGCGAAAAGAGAA+AGG | 0.510708 | 5_1:+43223090 | Msa0731750:three_prime_UTR |
| TGTGAGGAATGTGAGTGTTG+TGG | 0.522425 | 5_1:+43221318 | Msa0731750:CDS |
| ACCATAATAGATATAAGCTC+TGG | 0.524167 | 5_1:-43223920 | None:intergenic |
| TCAAGCCGAGTGTGTGATGA+AGG | 0.524335 | 5_1:+43221279 | Msa0731750:CDS |
| ACAAACTCCACAAAAGCTTA+GGG | 0.525227 | 5_1:+43221507 | Msa0731750:CDS |
| AAGAGAAGGATATTAGAGAA+GGG | 0.525360 | 5_1:+43221437 | Msa0731750:CDS |
| CATTACCTTCATCACACACT+CGG | 0.526290 | 5_1:-43221284 | None:intergenic |
| GTGTTGTGTAAAAGAGAGAT+TGG | 0.526411 | 5_1:-43220720 | None:intergenic |
| AAACAAGAAACTGGTGCTAC+CGG | 0.527329 | 5_1:+43221002 | Msa0731750:CDS |
| TGCTACCGGTCAACATTCAC+GGG | 0.527743 | 5_1:+43221016 | Msa0731750:CDS |
| ATAGAATAAATTTCATAATG+AGG | 0.537987 | 5_1:+43223822 | Msa0731750:three_prime_UTR |
| AGGGGACAATGCTCAAATAG+TGG | 0.539089 | 5_1:+43222950 | Msa0731750:CDS |
| GCTATGTGAATCCAGTAGAA+AGG | 0.543196 | 5_1:-43223039 | None:intergenic |
| AACAACCATGGTGCGACGCA+AGG | 0.546305 | 5_1:+43223115 | Msa0731750:three_prime_UTR |
| CACGTCCCGACCCGAAAGAA+CGG | 0.550232 | 5_1:+43221249 | Msa0731750:CDS |
| CGAAATAAACATGGCCACGC+AGG | 0.551997 | 5_1:+43220742 | Msa0731750:five_prime_UTR |
| ATCTGTGGCCAAGTTCCAAA+GGG | 0.552308 | 5_1:-43222822 | None:intergenic |
| ATAGTGGTGATCAAGAATGC+AGG | 0.552457 | 5_1:+43222966 | Msa0731750:CDS |
| ATTATGAATTTGTGACCACT+TGG | 0.553656 | 5_1:-43220848 | None:intergenic |
| ACCCCATTGCCATAGAGCAT+TGG | 0.559993 | 5_1:-43221155 | None:intergenic |
| TTAGGTCAGTTATTGTGGAA+CGG | 0.561360 | 5_1:-43221048 | None:intergenic |
| CCTCCAAAGAAAACAAGGTC+CGG | 0.562615 | 5_1:-43221220 | None:intergenic |
| CATTTGAACTAAGACTTGAT+CGG | 0.562871 | 5_1:-43223076 | None:intergenic |
| GCCATAGAGCATTGGCGCCG+AGG | 0.565082 | 5_1:-43221147 | None:intergenic |
| CGAGGCCGTGGATTAAGAGT+AGG | 0.565138 | 5_1:-43221129 | None:intergenic |
| AATCTGTGGCCAAGTTCCAA+AGG | 0.566254 | 5_1:-43222823 | None:intergenic |
| AACTTGGCCACAGATTGAAA+AGG | 0.586739 | 5_1:+43222830 | Msa0731750:CDS |
| TCTCCCCAGATAATTAATGT+AGG | 0.604303 | 5_1:-43222784 | None:intergenic |
| CAATTATCATTGTTACACAA+TGG | 0.608138 | 5_1:-43220605 | None:intergenic |
| ACTCTTCAATGTATACGTAC+CGG | 0.608199 | 5_1:+43221201 | Msa0731750:CDS |
| ACAATAACTGACCTAAAAGA+CGG | 0.610006 | 5_1:+43221055 | Msa0731750:CDS |
| CTGCACCCGTGAATGTTGAC+CGG | 0.615254 | 5_1:-43221021 | None:intergenic |
| ACCACTCATTCATTTCCAAG+TGG | 0.622589 | 5_1:+43220833 | Msa0731750:five_prime_UTR |
| TACACAACACGAAATAAACA+TGG | 0.626094 | 5_1:+43220733 | Msa0731750:five_prime_UTR |
| AAGAACCTTGCGTCGCACCA+TGG | 0.627674 | 5_1:-43223120 | None:intergenic |
| TGAGGAATGTGAGTGTTGTG+GGG | 0.629615 | 5_1:+43221320 | Msa0731750:CDS |
| TAGTGGTGATCAAGAATGCA+GGG | 0.631565 | 5_1:+43222967 | Msa0731750:CDS |
| CTACTCTTAATCCACGGCCT+CGG | 0.636289 | 5_1:+43221130 | Msa0731750:CDS |
| ATTGATCCGAGCCATTGCAA+AGG | 0.637787 | 5_1:+43222496 | Msa0731750:CDS |
| TTTGAATCACAGGCATTTAG+GGG | 0.641677 | 5_1:+43222932 | Msa0731750:intron |
| AAATCATGGAGGAAGCAAGA+GGG | 0.642638 | 5_1:-43221577 | None:intergenic |
| CCAAACCTACTCTTAATCCA+CGG | 0.645888 | 5_1:+43221124 | Msa0731750:CDS |
| GGCAACCAAGCCAAACGATG+TGG | 0.653313 | 5_1:-43221556 | None:intergenic |
| ATGACCCTCCAAAGAAAACA+AGG | 0.654054 | 5_1:-43221225 | None:intergenic |
| GAAATCATGGAGGAAGCAAG+AGG | 0.654459 | 5_1:-43221578 | None:intergenic |
| CAGCCTACATTAATTATCTG+GGG | 0.659468 | 5_1:+43222781 | Msa0731750:intron |
| GGTTGTGATTTGTGGATCAG+GGG | 0.662803 | 5_1:+43221405 | Msa0731750:CDS |
| AGATATGGACTCTACAAAGT+CGG | 0.664455 | 5_1:+43224064 | Msa0731750:three_prime_UTR |
| TAATGGAAATGAAGTGTGTG+AGG | 0.683645 | 5_1:+43221302 | Msa0731750:CDS |
| AAACACTGTGTCATACTGGT+TGG | 0.684147 | 5_1:-43220968 | None:intergenic |
| CGAGTGTGTGATGAAGGTAA+TGG | 0.686165 | 5_1:+43221285 | Msa0731750:CDS |
| ACCACTTGGAAATGAATGAG+TGG | 0.688110 | 5_1:-43220834 | None:intergenic |
| AAGAGAAAGGAAAACAACCA+TGG | 0.696861 | 5_1:+43223103 | Msa0731750:three_prime_UTR |
| GCCAATGCTCTATGGCAATG+GGG | 0.700910 | 5_1:+43221154 | Msa0731750:CDS |
| GAACCTGAGATATCTTAGGG+AGG | 0.715923 | 5_1:-43222535 | None:intergenic |
| TTACATGAATGAAATCATGG+AGG | 0.744111 | 5_1:-43221588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATATTGATTTATG+TGG | - | chr5_1:43220529-43220548 | None:intergenic | 10.0% |
| !! | AAAAGTTAAAATAACAAAAA+TGG | - | chr5_1:43220897-43220916 | None:intergenic | 10.0% |
| !!! | TTAAGAATACATTTTTTATA+TGG | + | chr5_1:43224010-43224029 | Msa0731750:three_prime_UTR | 10.0% |
| !!! | TTTAAGTTTTCATTTGATAT+AGG | + | chr5_1:43220560-43220579 | Msa0731750:five_prime_UTR | 15.0% |
| !! | ATTATGTTTAATCATGTTTA+GGG | + | chr5_1:43222038-43222057 | Msa0731750:intron | 15.0% |
| !! | ATAGAATAAATTTCATAATG+AGG | + | chr5_1:43223822-43223841 | Msa0731750:three_prime_UTR | 15.0% |
| !! | CAATGGTAGATAAAAATATT+TGG | - | chr5_1:43220591-43220610 | None:intergenic | 20.0% |
| !!! | TTTTTGGATATGCTTTTTTT+CGG | + | chr5_1:43221533-43221552 | Msa0731750:CDS | 20.0% |
| !! | TTAAAGTATATATAAAGCGT+AGG | + | chr5_1:43221680-43221699 | Msa0731750:intron | 20.0% |
| !! | AACTCATTCATATTATATCA+AGG | - | chr5_1:43221855-43221874 | None:intergenic | 20.0% |
| !! | GATTATGTTTAATCATGTTT+AGG | + | chr5_1:43222037-43222056 | Msa0731750:intron | 20.0% |
| !!! | CAGTTTTTAAAAGTAAAAAC+AGG | - | chr5_1:43222107-43222126 | None:intergenic | 20.0% |
| !! | TTAAATTGATGAATTTGAGT+AGG | + | chr5_1:43222439-43222458 | Msa0731750:intron | 20.0% |
| !! | CCATTACAAAATTATTACAA+CGG | - | chr5_1:43222729-43222748 | None:intergenic | 20.0% |
| !! | TTTGTAATGGTTAAATTAAG+AGG | + | chr5_1:43222739-43222758 | Msa0731750:intron | 20.0% |
| !! | TGTTAAATTGTGAATTTAGA+AGG | + | chr5_1:43222898-43222917 | Msa0731750:intron | 20.0% |
| !! | AATTATGTTAAGTGAAGATA+TGG | + | chr5_1:43224049-43224068 | Msa0731750:three_prime_UTR | 20.0% |
| ! | CAATTATCATTGTTACACAA+TGG | - | chr5_1:43220608-43220627 | None:intergenic | 25.0% |
| !! | TGTATGTTATGTTTTGTGTT+GGG | - | chr5_1:43220781-43220800 | None:intergenic | 25.0% |
| !! | ATGTATGTTATGTTTTGTGT+TGG | - | chr5_1:43220782-43220801 | None:intergenic | 25.0% |
| ! | AACTTACATGAATGAAATCA+TGG | - | chr5_1:43221594-43221613 | None:intergenic | 25.0% |
| !! | ACTAATTTACACCAACATTT+TGG | - | chr5_1:43221828-43221847 | None:intergenic | 25.0% |
| !!! | ACTTTTAAAAACTGAGTCAA+AGG | + | chr5_1:43222113-43222132 | Msa0731750:intron | 25.0% |
| !!! | TTTAGTTCTTAAACTGAATC+TGG | + | chr5_1:43222213-43222232 | Msa0731750:intron | 25.0% |
| !! | AAACTTTTATTACCTGACTA+TGG | + | chr5_1:43222388-43222407 | Msa0731750:intron | 25.0% |
| ! | AACATTAATATCCAACTAAG+AGG | - | chr5_1:43222572-43222591 | None:intergenic | 25.0% |
| !! | CCGTTGTAATAATTTTGTAA+TGG | + | chr5_1:43222726-43222745 | Msa0731750:intron | 25.0% |
| ! | AAAAAACAAAAGTAAAAGCG+CGG | - | chr5_1:43223505-43223524 | None:intergenic | 25.0% |
| ! | GCTTTGATTCAATATTAAGA+TGG | - | chr5_1:43223720-43223739 | None:intergenic | 25.0% |
| !!! | AATTTTGTTGTGTGTTTAAC+AGG | + | chr5_1:43223746-43223765 | Msa0731750:intron | 25.0% |
| ! | ATTTCATAATGAGGACAAAA+AGG | + | chr5_1:43223831-43223850 | Msa0731750:three_prime_UTR | 25.0% |
| ! | AGCTTATATCTATTATGGTT+AGG | + | chr5_1:43223924-43223943 | Msa0731750:three_prime_UTR | 25.0% |
| ! | GCTTATATCTATTATGGTTA+GGG | + | chr5_1:43223925-43223944 | Msa0731750:three_prime_UTR | 25.0% |
| ! | AAAAAAAAAGAGCAGTCAAT+AGG | - | chr5_1:43223952-43223971 | None:intergenic | 25.0% |
| ! | TGGTGAAAGATATGGATTAA+GGG | - | chr5_1:43220703-43220722 | None:intergenic | 30.0% |
| ! | TTGGTGAAAGATATGGATTA+AGG | - | chr5_1:43220704-43220723 | None:intergenic | 30.0% |
| TACACAACACGAAATAAACA+TGG | + | chr5_1:43220733-43220752 | Msa0731750:five_prime_UTR | 30.0% | |
| GAAAAAAAATTATACCTGCG+TGG | - | chr5_1:43220759-43220778 | None:intergenic | 30.0% | |
| ATTATGAATTTGTGACCACT+TGG | - | chr5_1:43220851-43220870 | None:intergenic | 30.0% | |
| GTTTAACTGAAACAAGAAAC+TGG | + | chr5_1:43220993-43221012 | Msa0731750:CDS | 30.0% | |
| ACAATAACTGACCTAAAAGA+CGG | + | chr5_1:43221055-43221074 | Msa0731750:CDS | 30.0% | |
| TTGAAATTCTTCCGTTCTTT+CGG | - | chr5_1:43221263-43221282 | None:intergenic | 30.0% | |
| TGTGAAGTATAAAGAGTTTG+TGG | + | chr5_1:43221378-43221397 | Msa0731750:CDS | 30.0% | |
| AAGAGAAGGATATTAGAGAA+GGG | + | chr5_1:43221437-43221456 | Msa0731750:CDS | 30.0% | |
| !! | GTTATTTCCTGTTTCTGATT+TGG | + | chr5_1:43221459-43221478 | Msa0731750:CDS | 30.0% |
| TTACATGAATGAAATCATGG+AGG | - | chr5_1:43221591-43221610 | None:intergenic | 30.0% | |
| GGTGTCTAATCAAACAATAT+CGG | - | chr5_1:43221719-43221738 | None:intergenic | 30.0% | |
| ! | TTTTTCCTATGTAGACAAAG+TGG | - | chr5_1:43221790-43221809 | None:intergenic | 30.0% |
| CAAGAAAGAAACCAAAATGT+TGG | + | chr5_1:43221814-43221833 | Msa0731750:intron | 30.0% | |
| TTATGAGCAAACATGGTTAT+AGG | + | chr5_1:43222003-43222022 | Msa0731750:intron | 30.0% | |
| ATTTGTCTACCATAGTATTC+AGG | + | chr5_1:43222297-43222316 | Msa0731750:CDS | 30.0% | |
| AATGTGTTGTGTCTATGTTA+TGG | + | chr5_1:43222342-43222361 | Msa0731750:intron | 30.0% | |
| ! | TTATTTTCAACACCATAGTC+AGG | - | chr5_1:43222403-43222422 | None:intergenic | 30.0% |
| ! | CTATGGTGTTGAAAATAAAG+AGG | + | chr5_1:43222405-43222424 | Msa0731750:intron | 30.0% |
| TCATCAATTTAAGCACACTA+TGG | - | chr5_1:43222431-43222450 | None:intergenic | 30.0% | |
| AATGAACCTGAGATATCTTA+GGG | - | chr5_1:43222541-43222560 | None:intergenic | 30.0% | |
| AAATGAACCTGAGATATCTT+AGG | - | chr5_1:43222542-43222561 | None:intergenic | 30.0% | |
| ATTTCTACTTTCCTCTTAGT+TGG | + | chr5_1:43222558-43222577 | Msa0731750:intron | 30.0% | |
| ! | AGATTAACCTTTTCAATCTG+TGG | - | chr5_1:43222840-43222859 | None:intergenic | 30.0% |
| TGAATTTAGAAGGAACTCAT+TGG | + | chr5_1:43222908-43222927 | Msa0731750:intron | 30.0% | |
| ATTTGAATCACAGGCATTTA+GGG | + | chr5_1:43222931-43222950 | Msa0731750:intron | 30.0% | |
| ATTTGAACTAAGACTTGATC+GGG | - | chr5_1:43223078-43223097 | None:intergenic | 30.0% | |
| CATTTGAACTAAGACTTGAT+CGG | - | chr5_1:43223079-43223098 | None:intergenic | 30.0% | |
| ! | TTTGTCACTGTTATTAGTCT+TGG | + | chr5_1:43223236-43223255 | Msa0731750:intron | 30.0% |
| !! | TTTTTCTTTTTTTGCTGCAG+AGG | + | chr5_1:43223526-43223545 | Msa0731750:intron | 30.0% |
| AATCAAGTTCAATTGCATGT+TGG | + | chr5_1:43223675-43223694 | Msa0731750:intron | 30.0% | |
| ATGTTGGATCAATAGACTTT+AGG | + | chr5_1:43223691-43223710 | Msa0731750:intron | 30.0% | |
| TGTTGGATCAATAGACTTTA+GGG | + | chr5_1:43223692-43223711 | Msa0731750:intron | 30.0% | |
| CTAGTTAAGTTTCAGATAGA+AGG | + | chr5_1:43223860-43223879 | Msa0731750:three_prime_UTR | 30.0% | |
| ACCAGAGCTTATATCTATTA+TGG | + | chr5_1:43223919-43223938 | Msa0731750:three_prime_UTR | 30.0% | |
| ACCATAATAGATATAAGCTC+TGG | - | chr5_1:43223923-43223942 | None:intergenic | 30.0% | |
| ATATTTCGTCACGTGTTCAA+TGG | - | chr5_1:43220665-43220684 | None:intergenic | 35.0% | |
| ! | TATGGATTAAGGGAGCAATA+TGG | - | chr5_1:43220693-43220712 | None:intergenic | 35.0% |
| AGAGAGATTGGTGAAAGATA+TGG | - | chr5_1:43220711-43220730 | None:intergenic | 35.0% | |
| GTGTTGTGTAAAAGAGAGAT+TGG | - | chr5_1:43220723-43220742 | None:intergenic | 35.0% | |
| !! | GTTGAATTTGGTTTGGAGTT+TGG | - | chr5_1:43220810-43220829 | None:intergenic | 35.0% |
| TGGTGAAGTTGAATTTGGTT+TGG | - | chr5_1:43220817-43220836 | None:intergenic | 35.0% | |
| ATGAGTGGTGAAGTTGAATT+TGG | - | chr5_1:43220822-43220841 | None:intergenic | 35.0% | |
| TTAGGTCAGTTATTGTGGAA+CGG | - | chr5_1:43221051-43221070 | None:intergenic | 35.0% | |
| !! | GTCTTTTAGGTCAGTTATTG+TGG | - | chr5_1:43221056-43221075 | None:intergenic | 35.0% |
| ! | GCATTATTGTTCCGTCTTTT+AGG | - | chr5_1:43221069-43221088 | None:intergenic | 35.0% |
| ACGGAACAATAATGCATTGT+TGG | + | chr5_1:43221074-43221093 | Msa0731750:CDS | 35.0% | |
| !! | TTTGATTCTGTTCGGGTTTT+AGG | - | chr5_1:43221103-43221122 | None:intergenic | 35.0% |
| ACTCTTCAATGTATACGTAC+CGG | + | chr5_1:43221201-43221220 | Msa0731750:CDS | 35.0% | |
| TGAAATTCTTCCGTTCTTTC+GGG | - | chr5_1:43221262-43221281 | None:intergenic | 35.0% | |
| TAATGGAAATGAAGTGTGTG+AGG | + | chr5_1:43221302-43221321 | Msa0731750:CDS | 35.0% | |
| GTATAAAGAGTTTGTGGAGA+AGG | + | chr5_1:43221384-43221403 | Msa0731750:CDS | 35.0% | |
| GAAGAGAAGGATATTAGAGA+AGG | + | chr5_1:43221436-43221455 | Msa0731750:CDS | 35.0% | |
| ! | GGATGAAGCTGCTAATATTT+TGG | + | chr5_1:43221480-43221499 | Msa0731750:CDS | 35.0% |
| ACAAACTCCACAAAAGCTTA+GGG | + | chr5_1:43221507-43221526 | Msa0731750:CDS | 35.0% | |
| ! | AAAAGTTCCCTAAGCTTTTG+TGG | - | chr5_1:43221517-43221536 | None:intergenic | 35.0% |
| ! | CAAAAGCTTAGGGAACTTTT+TGG | + | chr5_1:43221517-43221536 | Msa0731750:CDS | 35.0% |
| CCTTTACCATTGTTCTAACT+CGG | + | chr5_1:43221737-43221756 | Msa0731750:intron | 35.0% | |
| !! | TGCAGTTTTATGAGCAAACA+TGG | + | chr5_1:43221996-43222015 | Msa0731750:intron | 35.0% |
| TAACATGCTCCTGAATACTA+TGG | - | chr5_1:43222309-43222328 | None:intergenic | 35.0% | |
| ! | AAGTTTTCTGTCCTTTGCAA+TGG | - | chr5_1:43222510-43222529 | None:intergenic | 35.0% |
| ATTCATATTGAACTCGTGTC+CGG | - | chr5_1:43222678-43222697 | None:intergenic | 35.0% | |
| TGCAGCCTACATTAATTATC+TGG | + | chr5_1:43222779-43222798 | Msa0731750:intron | 35.0% | |
| GCAGCCTACATTAATTATCT+GGG | + | chr5_1:43222780-43222799 | Msa0731750:intron | 35.0% | |
| CAGCCTACATTAATTATCTG+GGG | + | chr5_1:43222781-43222800 | Msa0731750:intron | 35.0% | |
| TCTCCCCAGATAATTAATGT+AGG | - | chr5_1:43222787-43222806 | None:intergenic | 35.0% | |
| ACATGATCAAGTATTCCCTT+TGG | + | chr5_1:43222807-43222826 | Msa0731750:CDS | 35.0% | |
| ACTCATTGGATTTGAATCAC+AGG | + | chr5_1:43222922-43222941 | Msa0731750:intron | 35.0% | |
| GATTTGAATCACAGGCATTT+AGG | + | chr5_1:43222930-43222949 | Msa0731750:intron | 35.0% | |
| TTTGAATCACAGGCATTTAG+GGG | + | chr5_1:43222932-43222951 | Msa0731750:intron | 35.0% | |
| ! | ATTTTGTGTGGAAAAGGCTA+AGG | + | chr5_1:43222995-43223014 | Msa0731750:CDS | 35.0% |
| TATCTTGAAGTCCTTTCTAC+TGG | + | chr5_1:43223028-43223047 | Msa0731750:CDS | 35.0% | |
| GTTCAAATGCGAAAAGAGAA+AGG | + | chr5_1:43223090-43223109 | Msa0731750:three_prime_UTR | 35.0% | |
| AAGAGAAAGGAAAACAACCA+TGG | + | chr5_1:43223103-43223122 | Msa0731750:three_prime_UTR | 35.0% | |
| GGAATGCATTGAAAAGATCT+AGG | - | chr5_1:43223192-43223211 | None:intergenic | 35.0% | |
| !! | TAAGATTTTGAGAGCGTAGA+GGG | - | chr5_1:43223213-43223232 | None:intergenic | 35.0% |
| !! | ATAAGATTTTGAGAGCGTAG+AGG | - | chr5_1:43223214-43223233 | None:intergenic | 35.0% |
| !! | TGATCCCCATAGTTGTTTTA+CGG | + | chr5_1:43223332-43223351 | Msa0731750:intron | 35.0% |
| !! | GGAGAGCATTCAAATACAAA+AGG | + | chr5_1:43223558-43223577 | Msa0731750:intron | 35.0% |
| TCATAATGAGGACAAAAAGG+AGG | + | chr5_1:43223834-43223853 | Msa0731750:three_prime_UTR | 35.0% | |
| CATAATGAGGACAAAAAGGA+GGG | + | chr5_1:43223835-43223854 | Msa0731750:three_prime_UTR | 35.0% | |
| ACCACTCATTCATTTCCAAG+TGG | + | chr5_1:43220833-43220852 | Msa0731750:five_prime_UTR | 40.0% | |
| ACCACTTGGAAATGAATGAG+TGG | - | chr5_1:43220837-43220856 | None:intergenic | 40.0% | |
| AAACACTGTGTCATACTGGT+TGG | - | chr5_1:43220971-43220990 | None:intergenic | 40.0% | |
| ACTGAAACACTGTGTCATAC+TGG | - | chr5_1:43220975-43220994 | None:intergenic | 40.0% | |
| !! | AAACAAGAAACTGGTGCTAC+CGG | + | chr5_1:43221002-43221021 | Msa0731750:CDS | 40.0% |
| ! | GTTTGGGTTTGATTCTGTTC+GGG | - | chr5_1:43221110-43221129 | None:intergenic | 40.0% |
| ! | GGTTTGGGTTTGATTCTGTT+CGG | - | chr5_1:43221111-43221130 | None:intergenic | 40.0% |
| ! | CGTGGATTAAGAGTAGGTTT+GGG | - | chr5_1:43221126-43221145 | None:intergenic | 40.0% |
| CCAAACCTACTCTTAATCCA+CGG | + | chr5_1:43221124-43221143 | Msa0731750:CDS | 40.0% | |
| ATGACCCTCCAAAGAAAACA+AGG | - | chr5_1:43221228-43221247 | None:intergenic | 40.0% | |
| CATTACCTTCATCACACACT+CGG | - | chr5_1:43221287-43221306 | None:intergenic | 40.0% | |
| GGGTTTGTAGCGTATAGTTT+AGG | + | chr5_1:43221355-43221374 | Msa0731750:CDS | 40.0% | |
| ! | AAGGTTGTGATTTGTGGATC+AGG | + | chr5_1:43221403-43221422 | Msa0731750:CDS | 40.0% |
| ! | AGGTTGTGATTTGTGGATCA+GGG | + | chr5_1:43221404-43221423 | Msa0731750:CDS | 40.0% |
| GCTTCATCCAAATCAGAAAC+AGG | - | chr5_1:43221469-43221488 | None:intergenic | 40.0% | |
| ! | CTAAGCTTTTGTGGAGTTTG+TGG | - | chr5_1:43221508-43221527 | None:intergenic | 40.0% |
| CACAAACTCCACAAAAGCTT+AGG | + | chr5_1:43221506-43221525 | Msa0731750:CDS | 40.0% | |
| !!! | TTTTTTTCGGCCACATCGTT+TGG | + | chr5_1:43221546-43221565 | Msa0731750:CDS | 40.0% |
| AAATCATGGAGGAAGCAAGA+GGG | - | chr5_1:43221580-43221599 | None:intergenic | 40.0% | |
| CCGAGTTAGAACAATGGTAA+AGG | - | chr5_1:43221740-43221759 | None:intergenic | 40.0% | |
| GGAGTATGCTTCTCTAAACT+CGG | + | chr5_1:43222059-43222078 | Msa0731750:intron | 40.0% | |
| CTTCTCTAAACTCGGTCTTT+AGG | + | chr5_1:43222067-43222086 | Msa0731750:intron | 40.0% | |
| ! | GTATTCAGGAGCATGTTAGT+TGG | + | chr5_1:43222311-43222330 | Msa0731750:intron | 40.0% |
| AATTTGAGTAGGCAATGTGC+AGG | + | chr5_1:43222450-43222469 | Msa0731750:intron | 40.0% | |
| ATTTGAGTAGGCAATGTGCA+GGG | + | chr5_1:43222451-43222470 | Msa0731750:intron | 40.0% | |
| !! | CAAGTATTCCCTTTGGAACT+TGG | + | chr5_1:43222814-43222833 | Msa0731750:CDS | 40.0% |
| AACTTGGCCACAGATTGAAA+AGG | + | chr5_1:43222830-43222849 | Msa0731750:CDS | 40.0% | |
| ATAGTGGTGATCAAGAATGC+AGG | + | chr5_1:43222966-43222985 | Msa0731750:CDS | 40.0% | |
| TAGTGGTGATCAAGAATGCA+GGG | + | chr5_1:43222967-43222986 | Msa0731750:CDS | 40.0% | |
| ! | GCATGCATTTTGTGTGGAAA+AGG | + | chr5_1:43222989-43223008 | Msa0731750:CDS | 40.0% |
| GCTATGTGAATCCAGTAGAA+AGG | - | chr5_1:43223042-43223061 | None:intergenic | 40.0% | |
| !!! | GACGCAAGGTTCTTTGTTTT+CGG | + | chr5_1:43223129-43223148 | Msa0731750:intron | 40.0% |
| !! | TTTGTTTTCGGTCCCTTTCA+AGG | + | chr5_1:43223141-43223160 | Msa0731750:intron | 40.0% |
| AACAGACATGAGCCTTGAAA+GGG | - | chr5_1:43223156-43223175 | None:intergenic | 40.0% | |
| AAACAGACATGAGCCTTGAA+AGG | - | chr5_1:43223157-43223176 | None:intergenic | 40.0% | |
| !! | GATCCCCATAGTTGTTTTAC+GGG | + | chr5_1:43223333-43223352 | Msa0731750:intron | 40.0% |
| GATCCCGTAAAACAACTATG+GGG | - | chr5_1:43223339-43223358 | None:intergenic | 40.0% | |
| GGATCCCGTAAAACAACTAT+GGG | - | chr5_1:43223340-43223359 | None:intergenic | 40.0% | |
| TGGATCCCGTAAAACAACTA+TGG | - | chr5_1:43223341-43223360 | None:intergenic | 40.0% | |
| AATGTGCAGAGATGATAGAG+AGG | - | chr5_1:43223411-43223430 | None:intergenic | 40.0% | |
| CTGCACATTGTCTCCAAAAT+TGG | + | chr5_1:43223422-43223441 | Msa0731750:intron | 40.0% | |
| GCACAATAAAGAAGTTGCAG+AGG | + | chr5_1:43223461-43223480 | Msa0731750:intron | 40.0% | |
| ! | CCGTGGATTAAGAGTAGGTT+TGG | - | chr5_1:43221127-43221146 | None:intergenic | 45.0% |
| !!! | GTACCGGACCTTGTTTTCTT+TGG | + | chr5_1:43221217-43221236 | Msa0731750:CDS | 45.0% |
| CCTCCAAAGAAAACAAGGTC+CGG | - | chr5_1:43221223-43221242 | None:intergenic | 45.0% | |
| !!! | CGGACCTTGTTTTCTTTGGA+GGG | + | chr5_1:43221221-43221240 | Msa0731750:CDS | 45.0% |
| ! | ATTCTTCCGTTCTTTCGGGT+CGG | - | chr5_1:43221258-43221277 | None:intergenic | 45.0% |
| CGAGTGTGTGATGAAGGTAA+TGG | + | chr5_1:43221285-43221304 | Msa0731750:CDS | 45.0% | |
| ! | TGTGAGGAATGTGAGTGTTG+TGG | + | chr5_1:43221318-43221337 | Msa0731750:CDS | 45.0% |
| ! | GTGAGGAATGTGAGTGTTGT+GGG | + | chr5_1:43221319-43221338 | Msa0731750:CDS | 45.0% |
| ! | TGAGGAATGTGAGTGTTGTG+GGG | + | chr5_1:43221320-43221339 | Msa0731750:CDS | 45.0% |
| AGTGTTGTGGGGTTGAGTTA+TGG | + | chr5_1:43221331-43221350 | Msa0731750:CDS | 45.0% | |
| TTGTGGGGTTGAGTTATGGT+GGG | + | chr5_1:43221335-43221354 | Msa0731750:CDS | 45.0% | |
| GTGGAGAAGGTTGTGATTTG+TGG | + | chr5_1:43221397-43221416 | Msa0731750:CDS | 45.0% | |
| ! | GGTTGTGATTTGTGGATCAG+GGG | + | chr5_1:43221405-43221424 | Msa0731750:CDS | 45.0% |
| GAAATCATGGAGGAAGCAAG+AGG | - | chr5_1:43221581-43221600 | None:intergenic | 45.0% | |
| !! | GAGGTACCGAGTTAGAACAA+TGG | - | chr5_1:43221746-43221765 | None:intergenic | 45.0% |
| ! | TGTCGCCACTTTGTCTACAT+AGG | + | chr5_1:43221782-43221801 | Msa0731750:intron | 45.0% |
| ATTGATCCGAGCCATTGCAA+AGG | + | chr5_1:43222496-43222515 | Msa0731750:CDS | 45.0% | |
| TTCTGTCCTTTGCAATGGCT+CGG | - | chr5_1:43222505-43222524 | None:intergenic | 45.0% | |
| TGACCTCCCTAAGATATCTC+AGG | + | chr5_1:43222532-43222551 | Msa0731750:CDS | 45.0% | |
| GAACCTGAGATATCTTAGGG+AGG | - | chr5_1:43222538-43222557 | None:intergenic | 45.0% | |
| CATTAACACGTGTCAGACAC+CGG | + | chr5_1:43222656-43222675 | Msa0731750:intron | 45.0% | |
| ATCTGTGGCCAAGTTCCAAA+GGG | - | chr5_1:43222825-43222844 | None:intergenic | 45.0% | |
| AATCTGTGGCCAAGTTCCAA+AGG | - | chr5_1:43222826-43222845 | None:intergenic | 45.0% | |
| AGGGGACAATGCTCAAATAG+TGG | + | chr5_1:43222950-43222969 | Msa0731750:CDS | 45.0% | |
| AGAGAGGAAGGGAGGAATTA+GGG | - | chr5_1:43223395-43223414 | None:intergenic | 45.0% | |
| TAGAGAGGAAGGGAGGAATT+AGG | - | chr5_1:43223396-43223415 | None:intergenic | 45.0% | |
| GCAGAGATGATAGAGAGGAA+GGG | - | chr5_1:43223406-43223425 | None:intergenic | 45.0% | |
| TGCAGAGATGATAGAGAGGA+AGG | - | chr5_1:43223407-43223426 | None:intergenic | 45.0% | |
| TCTCCAAAATTGGACCCTCT+AGG | + | chr5_1:43223432-43223451 | Msa0731750:intron | 45.0% | |
| CTCCAAAATTGGACCCTCTA+GGG | + | chr5_1:43223433-43223452 | Msa0731750:intron | 45.0% | |
| ! | AGTAAAAGCGCGGTGAGAAT+GGG | - | chr5_1:43223495-43223514 | None:intergenic | 45.0% |
| ! | AAGTAAAAGCGCGGTGAGAA+TGG | - | chr5_1:43223496-43223515 | None:intergenic | 45.0% |
| TTGCTGCAGAGGTAGAATGT+AGG | + | chr5_1:43223537-43223556 | Msa0731750:intron | 45.0% | |
| CGAAATAAACATGGCCACGC+AGG | + | chr5_1:43220742-43220761 | Msa0731750:five_prime_UTR | 50.0% | |
| GTGCTACCGGTCAACATTCA+CGG | + | chr5_1:43221015-43221034 | Msa0731750:CDS | 50.0% | |
| TGCTACCGGTCAACATTCAC+GGG | + | chr5_1:43221016-43221035 | Msa0731750:CDS | 50.0% | |
| CTACTCTTAATCCACGGCCT+CGG | + | chr5_1:43221130-43221149 | Msa0731750:CDS | 50.0% | |
| CGCCAATGCTCTATGGCAAT+GGG | + | chr5_1:43221153-43221172 | Msa0731750:CDS | 50.0% | |
| GCCAATGCTCTATGGCAATG+GGG | + | chr5_1:43221154-43221173 | Msa0731750:CDS | 50.0% | |
| ACCCCATTGCCATAGAGCAT+TGG | - | chr5_1:43221158-43221177 | None:intergenic | 50.0% | |
| !!! | CCGGACCTTGTTTTCTTTGG+AGG | + | chr5_1:43221220-43221239 | Msa0731750:CDS | 50.0% |
| ! | TTCTTCCGTTCTTTCGGGTC+GGG | - | chr5_1:43221257-43221276 | None:intergenic | 50.0% |
| TCAAGCCGAGTGTGTGATGA+AGG | + | chr5_1:43221279-43221298 | Msa0731750:CDS | 50.0% | |
| GTTGTGGGGTTGAGTTATGG+TGG | + | chr5_1:43221334-43221353 | Msa0731750:CDS | 50.0% | |
| TTGTGGATCAGGGGTGAGTT+TGG | + | chr5_1:43221414-43221433 | Msa0731750:CDS | 50.0% | |
| AGGGGTGAGTTTGGAAGAGA+AGG | + | chr5_1:43221423-43221442 | Msa0731750:CDS | 50.0% | |
| GTACCTCGTAGTTGTGTCTG+AGG | + | chr5_1:43221759-43221778 | Msa0731750:intron | 50.0% | |
| ACACCTCAGACACAACTACG+AGG | - | chr5_1:43221765-43221784 | None:intergenic | 50.0% | |
| ! | TGCAGGGCATGCATTTTGTG+TGG | + | chr5_1:43222983-43223002 | Msa0731750:CDS | 50.0% |
| TCCACTCTTGCAAGTGTACG+AGG | + | chr5_1:43223357-43223376 | Msa0731750:intron | 50.0% | |
| CCACTCTTGCAAGTGTACGA+GGG | + | chr5_1:43223358-43223377 | Msa0731750:intron | 50.0% | |
| CACTCTTGCAAGTGTACGAG+GGG | + | chr5_1:43223359-43223378 | Msa0731750:intron | 50.0% | |
| ACTCTTGCAAGTGTACGAGG+GGG | + | chr5_1:43223360-43223379 | Msa0731750:intron | 50.0% | |
| GAGATGATAGAGAGGAAGGG+AGG | - | chr5_1:43223403-43223422 | None:intergenic | 50.0% | |
| ! | AGCCCTAGAGGGTCCAATTT+TGG | - | chr5_1:43223438-43223457 | None:intergenic | 50.0% |
| TATTGTGCAGCAGCCCTAGA+GGG | - | chr5_1:43223449-43223468 | None:intergenic | 50.0% | |
| TTATTGTGCAGCAGCCCTAG+AGG | - | chr5_1:43223450-43223469 | None:intergenic | 50.0% | |
| CTGCACCCGTGAATGTTGAC+CGG | - | chr5_1:43221024-43221043 | None:intergenic | 55.0% | |
| ! | CGAGGCCGTGGATTAAGAGT+AGG | - | chr5_1:43221132-43221151 | None:intergenic | 55.0% |
| GCGCCAATGCTCTATGGCAA+TGG | + | chr5_1:43221152-43221171 | Msa0731750:CDS | 55.0% | |
| TTCGGCCACATCGTTTGGCT+TGG | + | chr5_1:43221551-43221570 | Msa0731750:CDS | 55.0% | |
| GGCAACCAAGCCAAACGATG+TGG | - | chr5_1:43221559-43221578 | None:intergenic | 55.0% | |
| AACAACCATGGTGCGACGCA+AGG | + | chr5_1:43223115-43223134 | Msa0731750:three_prime_UTR | 55.0% | |
| AAGAACCTTGCGTCGCACCA+TGG | - | chr5_1:43223123-43223142 | None:intergenic | 55.0% | |
| CTGCGTGGTGCAGTAGTTGT+GGG | + | chr5_1:43223273-43223292 | Msa0731750:intron | 55.0% | |
| TGCGTGGTGCAGTAGTTGTG+GGG | + | chr5_1:43223274-43223293 | Msa0731750:intron | 55.0% | |
| CCCTCGTACACTTGCAAGAG+TGG | - | chr5_1:43223361-43223380 | None:intergenic | 55.0% | |
| CGGTCAACATTCACGGGTGC+AGG | + | chr5_1:43221022-43221041 | Msa0731750:CDS | 60.0% | |
| CACGTCCCGACCCGAAAGAA+CGG | + | chr5_1:43221249-43221268 | Msa0731750:CDS | 60.0% | |
| TGCACCACGCAGCTGCTGTA+GGG | - | chr5_1:43223265-43223284 | None:intergenic | 60.0% | |
| GCTGCGTGGTGCAGTAGTTG+TGG | + | chr5_1:43223272-43223291 | Msa0731750:intron | 60.0% | |
| GCCTCGGCGCCAATGCTCTA+TGG | + | chr5_1:43221146-43221165 | Msa0731750:CDS | 65.0% | |
| !! | GCCATAGAGCATTGGCGCCG+AGG | - | chr5_1:43221150-43221169 | None:intergenic | 65.0% |
| GATCCCCTACAGCAGCTGCG+TGG | + | chr5_1:43223258-43223277 | Msa0731750:intron | 65.0% | |
| GCACCACGCAGCTGCTGTAG+GGG | - | chr5_1:43223264-43223283 | None:intergenic | 65.0% | |
| CTGCACCACGCAGCTGCTGT+AGG | - | chr5_1:43223266-43223285 | None:intergenic | 65.0% | |
| !! | GAGCATTGGCGCCGAGGCCG+TGG | - | chr5_1:43221144-43221163 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43220513 | 43224086 | 43220513 | ID=Msa0731750;Name=Msa0731750 |
| chr5_1 | mRNA | 43220513 | 43224086 | 43220513 | ID=Msa0731750-mRNA-1;Parent=Msa0731750;Name=Msa0731750-mRNA-1;_AED=0.17;_eAED=0.17;_QI=464|0.6|0.83|1|0.8|0.66|6|391|318 |
| chr5_1 | exon | 43220513 | 43221606 | 43220513 | ID=Msa0731750-mRNA-1:exon:12347;Parent=Msa0731750-mRNA-1 |
| chr5_1 | exon | 43222269 | 43222324 | 43222269 | ID=Msa0731750-mRNA-1:exon:12348;Parent=Msa0731750-mRNA-1 |
| chr5_1 | exon | 43222472 | 43222553 | 43222472 | ID=Msa0731750-mRNA-1:exon:12349;Parent=Msa0731750-mRNA-1 |
| chr5_1 | exon | 43222784 | 43222851 | 43222784 | ID=Msa0731750-mRNA-1:exon:12350;Parent=Msa0731750-mRNA-1 |
| chr5_1 | exon | 43222944 | 43223136 | 43222944 | ID=Msa0731750-mRNA-1:exon:12351;Parent=Msa0731750-mRNA-1 |
| chr5_1 | exon | 43223768 | 43224086 | 43223768 | ID=Msa0731750-mRNA-1:exon:12352;Parent=Msa0731750-mRNA-1 |
| chr5_1 | five_prime_UTR | 43220513 | 43220976 | 43220513 | ID=Msa0731750-mRNA-1:five_prime_utr;Parent=Msa0731750-mRNA-1 |
| chr5_1 | CDS | 43220977 | 43221606 | 43220977 | ID=Msa0731750-mRNA-1:cds;Parent=Msa0731750-mRNA-1 |
| chr5_1 | CDS | 43222269 | 43222324 | 43222269 | ID=Msa0731750-mRNA-1:cds;Parent=Msa0731750-mRNA-1 |
| chr5_1 | CDS | 43222472 | 43222553 | 43222472 | ID=Msa0731750-mRNA-1:cds;Parent=Msa0731750-mRNA-1 |
| chr5_1 | CDS | 43222784 | 43222851 | 43222784 | ID=Msa0731750-mRNA-1:cds;Parent=Msa0731750-mRNA-1 |
| chr5_1 | CDS | 43222944 | 43223064 | 43222944 | ID=Msa0731750-mRNA-1:cds;Parent=Msa0731750-mRNA-1 |
| chr5_1 | three_prime_UTR | 43223065 | 43223136 | 43223065 | ID=Msa0731750-mRNA-1:three_prime_utr;Parent=Msa0731750-mRNA-1 |
| chr5_1 | three_prime_UTR | 43223768 | 43224086 | 43223768 | ID=Msa0731750-mRNA-1:three_prime_utr;Parent=Msa0731750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
