Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731880 | XP_013454048.2 | 85.207 | 169 | 2 | 1 | 53 | 221 | 194 | 339 | 3.15e-96 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731880 | sp|O82161|PHI1_TOBAC | 72.781 | 169 | 23 | 1 | 53 | 221 | 168 | 313 | 6.51e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731880 | G7KBB9 | 85.207 | 169 | 2 | 1 | 53 | 221 | 170 | 315 | 2.38e-96 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731880 | Msa0772920 | 0.869006 | 4.277179e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731880 | MtrunA17_Chr5g0426441 | 84.615 | 169 | 3 | 1 | 53 | 221 | 194 | 339 | 5.73e-93 | 291 |
| Msa0731880 | MtrunA17_Chr5g0426441 | 84.615 | 169 | 3 | 1 | 53 | 221 | 503 | 648 | 1.33e-92 | 291 |
| Msa0731880 | MtrunA17_Chr5g0426441 | 84.615 | 169 | 3 | 1 | 53 | 221 | 813 | 958 | 3.04e-92 | 290 |
| Msa0731880 | MtrunA17_Chr3g0115951 | 71.676 | 173 | 26 | 1 | 49 | 221 | 168 | 317 | 1.77e-81 | 246 |
| Msa0731880 | MtrunA17_Chr3g0116011 | 72.892 | 166 | 22 | 1 | 56 | 221 | 162 | 304 | 3.22e-81 | 244 |
| Msa0731880 | MtrunA17_Chr3g0116001 | 71.765 | 170 | 25 | 1 | 52 | 221 | 158 | 304 | 1.31e-80 | 243 |
| Msa0731880 | MtrunA17_Chr4g0050321 | 66.883 | 154 | 28 | 1 | 68 | 221 | 170 | 300 | 2.86e-68 | 211 |
| Msa0731880 | MtrunA17_Chr2g0279311 | 59.756 | 164 | 43 | 1 | 58 | 221 | 164 | 304 | 1.58e-66 | 207 |
| Msa0731880 | MtrunA17_Chr4g0018171 | 34.211 | 152 | 74 | 4 | 68 | 218 | 215 | 341 | 6.46e-14 | 69.7 |
| Msa0731880 | MtrunA17_Chr1g0188071 | 35.948 | 153 | 73 | 4 | 68 | 218 | 212 | 341 | 7.71e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731880 | AT4G08950.1 | 70.482 | 166 | 25 | 2 | 57 | 221 | 172 | 314 | 6.57e-77 | 234 |
| Msa0731880 | AT1G35140.1 | 68.153 | 157 | 27 | 1 | 65 | 221 | 176 | 309 | 2.63e-73 | 225 |
| Msa0731880 | AT5G64260.1 | 50.943 | 212 | 64 | 2 | 10 | 221 | 134 | 305 | 3.85e-65 | 204 |
| Msa0731880 | AT5G09440.1 | 58.861 | 158 | 30 | 3 | 64 | 221 | 156 | 278 | 2.26e-55 | 178 |
| Msa0731880 | AT3G02970.1 | 31.844 | 179 | 83 | 3 | 57 | 219 | 175 | 330 | 3.95e-23 | 95.5 |
| Msa0731880 | AT5G51550.1 | 36.184 | 152 | 71 | 4 | 68 | 218 | 205 | 331 | 4.41e-15 | 73.2 |
| Msa0731880 | AT2G35150.1 | 36.424 | 151 | 76 | 3 | 68 | 217 | 185 | 316 | 2.04e-13 | 68.6 |
| Msa0731880 | AT2G17230.1 | 34.868 | 152 | 76 | 3 | 68 | 218 | 228 | 357 | 2.84e-13 | 68.2 |
Find 78 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGAGCCCAGGCTAGC+TGG | 0.151458 | 5_1:+43474235 | Msa0731880:CDS |
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_1:+43474373 | Msa0731880:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5_1:-43474742 | None:intergenic |
| GGCTAGAGCCCAGGCTAGCT+GGG | 0.229723 | 5_1:+43474236 | Msa0731880:CDS |
| TCTTATGGAGCACGCGAAAA+TGG | 0.257288 | 5_1:+43474280 | Msa0731880:CDS |
| GGCCCATAGCCCGTCGAGGC+TGG | 0.258329 | 5_1:-43474706 | None:intergenic |
| TGGTTATGCTGGGGACCTTT+TGG | 0.299405 | 5_1:+43474906 | Msa0731880:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_1:-43474385 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_1:-43474841 | None:intergenic |
| ACCGCCCCTAGTTCTTCTTA+TGG | 0.345930 | 5_1:+43474265 | Msa0731880:CDS |
| GAAACAAGTTCGCGTACATT+TGG | 0.347338 | 5_1:+43474308 | Msa0731880:CDS |
| AGCCCAGCCTCGACGGGCTA+TGG | 0.348035 | 5_1:+43474703 | Msa0731880:intron |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_1:+43474849 | Msa0731880:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_1:+43474837 | Msa0731880:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_1:-43474373 | None:intergenic |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5_1:+43474745 | Msa0731880:CDS |
| GCTAGCCTGGGCTCTAGCCC+AGG | 0.391211 | 5_1:-43474232 | None:intergenic |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_1:+43474952 | Msa0731880:CDS |
| TAGAAAGTAGAAGCAGAGCC+TGG | 0.398150 | 5_1:+43474214 | Msa0731880:intron |
| CAGAGCCTGGGCTAGAGCCC+AGG | 0.408604 | 5_1:+43474227 | Msa0731880:CDS |
| AAACAAGTTCGCGTACATTT+GGG | 0.409022 | 5_1:+43474309 | Msa0731880:CDS |
| GGGCCGTCTTAACAAATTCA+TGG | 0.411590 | 5_1:+43474425 | Msa0731880:CDS |
| GTGCCGTAGCCCAGCCTCGA+CGG | 0.416297 | 5_1:+43474696 | Msa0731880:intron |
| AAAAGGATTGGTCACGGTTC+CGG | 0.425006 | 5_1:-43474797 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_1:+43474895 | Msa0731880:CDS |
| CATCGTTATTTGGTGCAACC+AGG | 0.431837 | 5_1:-43474732 | None:intergenic |
| GGAACCGTGACCAATCCTTT+TGG | 0.440566 | 5_1:+43474799 | Msa0731880:CDS |
| GCTAGAGCCCAGGCTAGCTG+GGG | 0.452682 | 5_1:+43474237 | Msa0731880:CDS |
| GCAACCAATGGTGCACTTTG+TGG | 0.454005 | 5_1:-43474397 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_1:-43474814 | None:intergenic |
| GCCCATAGCCCGTCGAGGCT+GGG | 0.461747 | 5_1:-43474705 | None:intergenic |
| GACGGGCTATGGGCCGGCCC+TGG | 0.464488 | 5_1:+43474714 | Msa0731880:CDS |
| AGCCTCGACGGGCTATGGGC+CGG | 0.470008 | 5_1:+43474708 | Msa0731880:CDS |
| TGCACCATTGGTTGCACCCA+GGG | 0.474161 | 5_1:+43474405 | Msa0731880:CDS |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_1:+43474859 | Msa0731880:CDS |
| TTATTTGGTGCAACCAGGGC+CGG | 0.475764 | 5_1:-43474727 | None:intergenic |
| CGTGCTCCATAAGAAGAACT+AGG | 0.477616 | 5_1:-43474271 | None:intergenic |
| TGCCGTAGCCCAGCCTCGAC+GGG | 0.480273 | 5_1:+43474697 | Msa0731880:intron |
| TGTACCGGTGTTTATGCTAA+AGG | 0.481549 | 5_1:+43474874 | Msa0731880:CDS |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_1:+43474886 | Msa0731880:CDS |
| GAATTTGTTAAGACGGCCCT+GGG | 0.505616 | 5_1:-43474421 | None:intergenic |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_1:+43474393 | Msa0731880:CDS |
| ATATCCATTACCAAAAGGAT+TGG | 0.518887 | 5_1:-43474809 | None:intergenic |
| GGCCCATGAATTTGTTAAGA+CGG | 0.518888 | 5_1:-43474428 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_1:+43474896 | Msa0731880:CDS |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_1:+43474943 | Msa0731880:CDS |
| GGCCGTCTTAACAAATTCAT+GGG | 0.530661 | 5_1:+43474426 | Msa0731880:CDS |
| GCCCAGCCTCGACGGGCTAT+GGG | 0.532576 | 5_1:+43474704 | Msa0731880:intron |
| GTGCTCCATAAGAAGAACTA+GGG | 0.534483 | 5_1:-43474270 | None:intergenic |
| ACGGCCCTGGGTGCAACCAA+TGG | 0.536196 | 5_1:-43474409 | None:intergenic |
| AAATGGAGACTGAGAGGAAG+AGG | 0.537664 | 5_1:+43473996 | None:intergenic |
| CTAGAGCCCAGGCTAGCTGG+GGG | 0.537975 | 5_1:+43474238 | Msa0731880:CDS |
| TGAATTTGTTAAGACGGCCC+TGG | 0.544740 | 5_1:-43474422 | None:intergenic |
| AATTCTGAAACTCAATGTGC+TGG | 0.549654 | 5_1:+43474337 | Msa0731880:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5_1:+43474750 | Msa0731880:CDS |
| AACGTCAGCTTGTTCTACAT+TGG | 0.554070 | 5_1:+43475011 | Msa0731880:CDS |
| AGAAAGTAGAAGCAGAGCCT+GGG | 0.555058 | 5_1:+43474215 | Msa0731880:intron |
| AGAGATTGAGTCACTGAGAG+AGG | 0.557112 | 5_1:+43474057 | Msa0731880:CDS |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_1:+43474956 | Msa0731880:CDS |
| AAGTTCGCGTACATTTGGGT+TGG | 0.562836 | 5_1:+43474313 | Msa0731880:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.566674 | 5_1:-43474904 | None:intergenic |
| ATCGTTATTTGGTGCAACCA+GGG | 0.579431 | 5_1:-43474731 | None:intergenic |
| GTGCACCATTGGTTGCACCC+AGG | 0.596169 | 5_1:+43474404 | Msa0731880:CDS |
| GAGATTGAGTCACTGAGAGA+GGG | 0.600595 | 5_1:+43474058 | Msa0731880:CDS |
| AAATGAAAATGGAGACTGAG+AGG | 0.606376 | 5_1:+43473990 | None:intergenic |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_1:-43474381 | None:intergenic |
| GAAGAGGCACAAATTGAGAG+AGG | 0.622879 | 5_1:+43474012 | Msa0731880:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5_1:+43474897 | Msa0731880:CDS |
| GGTTGCACCAAATAACGATG+TGG | 0.632748 | 5_1:+43474735 | Msa0731880:CDS |
| ATTACCAAAAGGATTGGTCA+CGG | 0.640683 | 5_1:-43474803 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_1:-43474853 | None:intergenic |
| GGCCGGCCCATAGCCCGTCG+AGG | 0.649609 | 5_1:-43474710 | None:intergenic |
| AAGAGGCACAAATTGAGAGA+GGG | 0.657782 | 5_1:+43474013 | Msa0731880:CDS |
| GTTGCACCAAATAACGATGT+GGG | 0.659387 | 5_1:+43474736 | Msa0731880:CDS |
| TGCTCCATAAGAAGAACTAG+GGG | 0.678183 | 5_1:-43474269 | None:intergenic |
| TCCATAAGAAGAACTAGGGG+CGG | 0.681684 | 5_1:-43474266 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.681885 | 5_1:+43474350 | Msa0731880:CDS |
| AGCTCCTTTAGCATAAACAC+CGG | 0.684494 | 5_1:-43474878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAAATT+TGG | + | chr5_1:43474651-43474670 | Msa0731880:intron | 0.0% |
| !! | TAAAAAAAAAAAAAAAATTT+GGG | + | chr5_1:43474652-43474671 | Msa0731880:intron | 0.0% |
| !! | ATAAAAAAAAAAAAAAAATT+TGG | + | chr5_1:43474651-43474670 | Msa0731880:intron | 0.0% |
| !! | TAAAAAAAAAAAAAAAATTT+GGG | + | chr5_1:43474652-43474671 | Msa0731880:intron | 0.0% |
| !!! | ATGACTTATTTATTTTTTTT+GGG | - | chr5_1:43474500-43474519 | None:intergenic | 10.0% |
| !!! | AATGACTTATTTATTTTTTT+TGG | - | chr5_1:43474501-43474520 | None:intergenic | 10.0% |
| !!! | ATGACTTATTTATTTTTTTT+GGG | - | chr5_1:43474500-43474519 | None:intergenic | 10.0% |
| !!! | AATGACTTATTTATTTTTTT+TGG | - | chr5_1:43474501-43474520 | None:intergenic | 10.0% |
| !! | ACTTAAAAAAACCAAAAAAA+GGG | - | chr5_1:43474161-43474180 | None:intergenic | 15.0% |
| !! | TACTTAAAAAAACCAAAAAA+AGG | - | chr5_1:43474162-43474181 | None:intergenic | 15.0% |
| !!! | GTTTTTTTAAGTAGAAAATA+TGG | + | chr5_1:43474169-43474188 | Msa0731880:intron | 15.0% |
| !!! | TGACTTATTTATTTTTTTTG+GGG | - | chr5_1:43474499-43474518 | None:intergenic | 15.0% |
| !! | ACTTAAAAAAACCAAAAAAA+GGG | - | chr5_1:43474161-43474180 | None:intergenic | 15.0% |
| !! | TACTTAAAAAAACCAAAAAA+AGG | - | chr5_1:43474162-43474181 | None:intergenic | 15.0% |
| !!! | GTTTTTTTAAGTAGAAAATA+TGG | + | chr5_1:43474169-43474188 | Msa0731880:intron | 15.0% |
| !!! | TGACTTATTTATTTTTTTTG+GGG | - | chr5_1:43474499-43474518 | None:intergenic | 15.0% |
| !! | TGCAAAAAAAAGAAAAAATC+TGG | + | chr5_1:43474472-43474491 | Msa0731880:intron | 20.0% |
| !! | GCAAAAAAAAGAAAAAATCT+GGG | + | chr5_1:43474473-43474492 | Msa0731880:intron | 20.0% |
| !! | AAAAAAAAAATCACACACTT+TGG | + | chr5_1:43474527-43474546 | Msa0731880:intron | 20.0% |
| !! | TGCAAAAAAAAGAAAAAATC+TGG | + | chr5_1:43474472-43474491 | Msa0731880:intron | 20.0% |
| !! | GCAAAAAAAAGAAAAAATCT+GGG | + | chr5_1:43474473-43474492 | Msa0731880:intron | 20.0% |
| !! | AAAAAAAAAATCACACACTT+TGG | + | chr5_1:43474527-43474546 | Msa0731880:intron | 20.0% |
| ! | TAAGTAGAAAATATGGCTAT+TGG | + | chr5_1:43474176-43474195 | Msa0731880:intron | 25.0% |
| ! | AAGTAGAAAATATGGCTATT+GGG | + | chr5_1:43474177-43474196 | Msa0731880:intron | 25.0% |
| !!! | TCGCTTCTAAAATTAAAACT+GGG | - | chr5_1:43474452-43474471 | None:intergenic | 25.0% |
| !!! | ATCGCTTCTAAAATTAAAAC+TGG | - | chr5_1:43474453-43474472 | None:intergenic | 25.0% |
| ! | TTAAAAGCGAATTATTTCAG+TGG | - | chr5_1:43474598-43474617 | None:intergenic | 25.0% |
| ! | TATGTAAGACACGAAAATAA+TGG | - | chr5_1:43474632-43474651 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43474817-43474836 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43474817-43474836 | Msa0731880:CDS | 25.0% |
| ! | TAAGTAGAAAATATGGCTAT+TGG | + | chr5_1:43474176-43474195 | Msa0731880:intron | 25.0% |
| ! | AAGTAGAAAATATGGCTATT+GGG | + | chr5_1:43474177-43474196 | Msa0731880:intron | 25.0% |
| !!! | TCGCTTCTAAAATTAAAACT+GGG | - | chr5_1:43474452-43474471 | None:intergenic | 25.0% |
| !!! | ATCGCTTCTAAAATTAAAAC+TGG | - | chr5_1:43474453-43474472 | None:intergenic | 25.0% |
| ! | TTAAAAGCGAATTATTTCAG+TGG | - | chr5_1:43474598-43474617 | None:intergenic | 25.0% |
| ! | TATGTAAGACACGAAAATAA+TGG | - | chr5_1:43474632-43474651 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43474817-43474836 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43474817-43474836 | Msa0731880:CDS | 25.0% |
| AAAAAAATCACACACTTTGG+TGG | + | chr5_1:43474530-43474549 | Msa0731880:intron | 30.0% | |
| AAAAAATCACACACTTTGGT+GGG | + | chr5_1:43474531-43474550 | Msa0731880:intron | 30.0% | |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_1:43474812-43474831 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43474952-43474971 | Msa0731880:CDS | 30.0% | |
| AAAAAAATCACACACTTTGG+TGG | + | chr5_1:43474530-43474549 | Msa0731880:intron | 30.0% | |
| AAAAAATCACACACTTTGGT+GGG | + | chr5_1:43474531-43474550 | Msa0731880:intron | 30.0% | |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_1:43474812-43474831 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43474952-43474971 | Msa0731880:CDS | 30.0% | |
| CAAAAAAAGGGCAGAATTGA+GGG | - | chr5_1:43474149-43474168 | None:intergenic | 35.0% | |
| TCTGCTTCTACTTTCTATGT+TGG | - | chr5_1:43474211-43474230 | None:intergenic | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_1:43474309-43474328 | Msa0731880:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43474337-43474356 | Msa0731880:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43474376-43474395 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43474373-43474392 | Msa0731880:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43474384-43474403 | None:intergenic | 35.0% | |
| ACCTCACACCAAACAAAATA+AGG | + | chr5_1:43474567-43474586 | Msa0731880:intron | 35.0% | |
| AAATTTGGGCCCCAAAAAAT+TGG | + | chr5_1:43474666-43474685 | Msa0731880:intron | 35.0% | |
| !! | ATTACCAAAAGGATTGGTCA+CGG | - | chr5_1:43474806-43474825 | None:intergenic | 35.0% |
| CAAAAAAAGGGCAGAATTGA+GGG | - | chr5_1:43474149-43474168 | None:intergenic | 35.0% | |
| TCTGCTTCTACTTTCTATGT+TGG | - | chr5_1:43474211-43474230 | None:intergenic | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_1:43474309-43474328 | Msa0731880:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43474337-43474356 | Msa0731880:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43474376-43474395 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43474373-43474392 | Msa0731880:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43474384-43474403 | None:intergenic | 35.0% | |
| ACCTCACACCAAACAAAATA+AGG | + | chr5_1:43474567-43474586 | Msa0731880:intron | 35.0% | |
| AAATTTGGGCCCCAAAAAAT+TGG | + | chr5_1:43474666-43474685 | Msa0731880:intron | 35.0% | |
| !! | ATTACCAAAAGGATTGGTCA+CGG | - | chr5_1:43474806-43474825 | None:intergenic | 35.0% |
| ! | AAGAGGCACAAATTGAGAGA+GGG | + | chr5_1:43474013-43474032 | Msa0731880:CDS | 40.0% |
| AGAATTGAGGGCAAATGTTC+AGG | - | chr5_1:43474137-43474156 | None:intergenic | 40.0% | |
| CCAAAAAAAGGGCAGAATTG+AGG | - | chr5_1:43474150-43474169 | None:intergenic | 40.0% | |
| !!! | CCTCAATTCTGCCCTTTTTT+TGG | + | chr5_1:43474147-43474166 | Msa0731880:intron | 40.0% |
| AGAAAATATGGCTATTGGGC+TGG | + | chr5_1:43474181-43474200 | Msa0731880:intron | 40.0% | |
| GAAAATATGGCTATTGGGCT+GGG | + | chr5_1:43474182-43474201 | Msa0731880:intron | 40.0% | |
| TGCTCCATAAGAAGAACTAG+GGG | - | chr5_1:43474272-43474291 | None:intergenic | 40.0% | |
| GTGCTCCATAAGAAGAACTA+GGG | - | chr5_1:43474273-43474292 | None:intergenic | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_1:43474308-43474327 | Msa0731880:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43474388-43474407 | None:intergenic | 40.0% | |
| GGCCGTCTTAACAAATTCAT+GGG | + | chr5_1:43474426-43474445 | Msa0731880:CDS | 40.0% | |
| !! | GGCCCATGAATTTGTTAAGA+CGG | - | chr5_1:43474431-43474450 | None:intergenic | 40.0% |
| !!! | GCCTTATTTTGTTTGGTGTG+AGG | - | chr5_1:43474571-43474590 | None:intergenic | 40.0% |
| !! | ATCGTTATTTGGTGCAACCA+GGG | - | chr5_1:43474734-43474753 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43474736-43474755 | Msa0731880:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43474745-43474764 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_1:43474745-43474764 | Msa0731880:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+CGG | + | chr5_1:43474778-43474797 | Msa0731880:CDS | 40.0% |
| ! | GTGACCAATCCTTTTGGTAA+TGG | + | chr5_1:43474805-43474824 | Msa0731880:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_1:43474874-43474893 | Msa0731880:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_1:43474881-43474900 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43474886-43474905 | Msa0731880:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43474924-43474943 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43474922-43474941 | Msa0731880:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43474956-43474975 | Msa0731880:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43474994-43475013 | None:intergenic | 40.0% |
| ! | GTAGAACAAGCTGACGTTTT+AGG | - | chr5_1:43475009-43475028 | None:intergenic | 40.0% |
| ! | AACGTCAGCTTGTTCTACAT+TGG | + | chr5_1:43475011-43475030 | Msa0731880:CDS | 40.0% |
| ! | AAGAGGCACAAATTGAGAGA+GGG | + | chr5_1:43474013-43474032 | Msa0731880:CDS | 40.0% |
| AGAATTGAGGGCAAATGTTC+AGG | - | chr5_1:43474137-43474156 | None:intergenic | 40.0% | |
| CCAAAAAAAGGGCAGAATTG+AGG | - | chr5_1:43474150-43474169 | None:intergenic | 40.0% | |
| !!! | CCTCAATTCTGCCCTTTTTT+TGG | + | chr5_1:43474147-43474166 | Msa0731880:intron | 40.0% |
| AGAAAATATGGCTATTGGGC+TGG | + | chr5_1:43474181-43474200 | Msa0731880:intron | 40.0% | |
| GAAAATATGGCTATTGGGCT+GGG | + | chr5_1:43474182-43474201 | Msa0731880:intron | 40.0% | |
| TGCTCCATAAGAAGAACTAG+GGG | - | chr5_1:43474272-43474291 | None:intergenic | 40.0% | |
| GTGCTCCATAAGAAGAACTA+GGG | - | chr5_1:43474273-43474292 | None:intergenic | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_1:43474308-43474327 | Msa0731880:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43474388-43474407 | None:intergenic | 40.0% | |
| GGCCGTCTTAACAAATTCAT+GGG | + | chr5_1:43474426-43474445 | Msa0731880:CDS | 40.0% | |
| !! | GGCCCATGAATTTGTTAAGA+CGG | - | chr5_1:43474431-43474450 | None:intergenic | 40.0% |
| !!! | GCCTTATTTTGTTTGGTGTG+AGG | - | chr5_1:43474571-43474590 | None:intergenic | 40.0% |
| !! | ATCGTTATTTGGTGCAACCA+GGG | - | chr5_1:43474734-43474753 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43474736-43474755 | Msa0731880:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43474745-43474764 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_1:43474745-43474764 | Msa0731880:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+CGG | + | chr5_1:43474778-43474797 | Msa0731880:CDS | 40.0% |
| ! | GTGACCAATCCTTTTGGTAA+TGG | + | chr5_1:43474805-43474824 | Msa0731880:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_1:43474874-43474893 | Msa0731880:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_1:43474881-43474900 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43474886-43474905 | Msa0731880:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43474924-43474943 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43474922-43474941 | Msa0731880:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43474956-43474975 | Msa0731880:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43474994-43475013 | None:intergenic | 40.0% |
| ! | GTAGAACAAGCTGACGTTTT+AGG | - | chr5_1:43475009-43475028 | None:intergenic | 40.0% |
| ! | AACGTCAGCTTGTTCTACAT+TGG | + | chr5_1:43475011-43475030 | Msa0731880:CDS | 40.0% |
| ! | GAAGAGGCACAAATTGAGAG+AGG | + | chr5_1:43474012-43474031 | Msa0731880:CDS | 45.0% |
| AGAGATTGAGTCACTGAGAG+AGG | + | chr5_1:43474057-43474076 | Msa0731880:CDS | 45.0% | |
| GAGATTGAGTCACTGAGAGA+GGG | + | chr5_1:43474058-43474077 | Msa0731880:CDS | 45.0% | |
| GAGTCACGACAAGTTAGAGA+AGG | + | chr5_1:43474082-43474101 | Msa0731880:intron | 45.0% | |
| TAGAAAGTAGAAGCAGAGCC+TGG | + | chr5_1:43474214-43474233 | Msa0731880:intron | 45.0% | |
| AGAAAGTAGAAGCAGAGCCT+GGG | + | chr5_1:43474215-43474234 | Msa0731880:intron | 45.0% | |
| TCCATAAGAAGAACTAGGGG+CGG | - | chr5_1:43474269-43474288 | None:intergenic | 45.0% | |
| CGTGCTCCATAAGAAGAACT+AGG | - | chr5_1:43474274-43474293 | None:intergenic | 45.0% | |
| TCTTATGGAGCACGCGAAAA+TGG | + | chr5_1:43474280-43474299 | Msa0731880:CDS | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_1:43474313-43474332 | Msa0731880:CDS | 45.0% | |
| !! | GAATTTGTTAAGACGGCCCT+GGG | - | chr5_1:43474424-43474443 | None:intergenic | 45.0% |
| !! | TGAATTTGTTAAGACGGCCC+TGG | - | chr5_1:43474425-43474444 | None:intergenic | 45.0% |
| GGGCCGTCTTAACAAATTCA+TGG | + | chr5_1:43474425-43474444 | Msa0731880:CDS | 45.0% | |
| !!! | TGGCGAGGCCTTATTTTGTT+TGG | - | chr5_1:43474578-43474597 | None:intergenic | 45.0% |
| AGCGAATTATTTCAGTGGCG+AGG | - | chr5_1:43474593-43474612 | None:intergenic | 45.0% | |
| TTTGGGCCCCAAAAAATTGG+AGG | + | chr5_1:43474669-43474688 | Msa0731880:intron | 45.0% | |
| !! | CATCGTTATTTGGTGCAACC+AGG | - | chr5_1:43474735-43474754 | None:intergenic | 45.0% |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43474735-43474754 | Msa0731880:CDS | 45.0% | |
| !! | AAAAGGATTGGTCACGGTTC+CGG | - | chr5_1:43474800-43474819 | None:intergenic | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43474837-43474856 | Msa0731880:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43474844-43474863 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43474896-43474915 | Msa0731880:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43474897-43474916 | Msa0731880:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43474943-43474962 | Msa0731880:CDS | 45.0% | |
| ! | GAAGAGGCACAAATTGAGAG+AGG | + | chr5_1:43474012-43474031 | Msa0731880:CDS | 45.0% |
| AGAGATTGAGTCACTGAGAG+AGG | + | chr5_1:43474057-43474076 | Msa0731880:CDS | 45.0% | |
| GAGATTGAGTCACTGAGAGA+GGG | + | chr5_1:43474058-43474077 | Msa0731880:CDS | 45.0% | |
| GAGTCACGACAAGTTAGAGA+AGG | + | chr5_1:43474082-43474101 | Msa0731880:intron | 45.0% | |
| TAGAAAGTAGAAGCAGAGCC+TGG | + | chr5_1:43474214-43474233 | Msa0731880:intron | 45.0% | |
| AGAAAGTAGAAGCAGAGCCT+GGG | + | chr5_1:43474215-43474234 | Msa0731880:intron | 45.0% | |
| TCCATAAGAAGAACTAGGGG+CGG | - | chr5_1:43474269-43474288 | None:intergenic | 45.0% | |
| CGTGCTCCATAAGAAGAACT+AGG | - | chr5_1:43474274-43474293 | None:intergenic | 45.0% | |
| TCTTATGGAGCACGCGAAAA+TGG | + | chr5_1:43474280-43474299 | Msa0731880:CDS | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_1:43474313-43474332 | Msa0731880:CDS | 45.0% | |
| !! | GAATTTGTTAAGACGGCCCT+GGG | - | chr5_1:43474424-43474443 | None:intergenic | 45.0% |
| !! | TGAATTTGTTAAGACGGCCC+TGG | - | chr5_1:43474425-43474444 | None:intergenic | 45.0% |
| GGGCCGTCTTAACAAATTCA+TGG | + | chr5_1:43474425-43474444 | Msa0731880:CDS | 45.0% | |
| !!! | TGGCGAGGCCTTATTTTGTT+TGG | - | chr5_1:43474578-43474597 | None:intergenic | 45.0% |
| AGCGAATTATTTCAGTGGCG+AGG | - | chr5_1:43474593-43474612 | None:intergenic | 45.0% | |
| TTTGGGCCCCAAAAAATTGG+AGG | + | chr5_1:43474669-43474688 | Msa0731880:intron | 45.0% | |
| !! | CATCGTTATTTGGTGCAACC+AGG | - | chr5_1:43474735-43474754 | None:intergenic | 45.0% |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43474735-43474754 | Msa0731880:CDS | 45.0% | |
| !! | AAAAGGATTGGTCACGGTTC+CGG | - | chr5_1:43474800-43474819 | None:intergenic | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43474837-43474856 | Msa0731880:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43474844-43474863 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43474896-43474915 | Msa0731880:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43474897-43474916 | Msa0731880:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43474943-43474962 | Msa0731880:CDS | 45.0% | |
| ! | ACCGCCCCTAGTTCTTCTTA+TGG | + | chr5_1:43474265-43474284 | Msa0731880:CDS | 50.0% |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43474350-43474369 | Msa0731880:CDS | 50.0% |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43474393-43474412 | Msa0731880:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43474400-43474419 | None:intergenic | 50.0% | |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | - | chr5_1:43474678-43474697 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | - | chr5_1:43474679-43474698 | None:intergenic | 50.0% |
| !! | TTATTTGGTGCAACCAGGGC+CGG | - | chr5_1:43474730-43474749 | None:intergenic | 50.0% |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43474750-43474769 | Msa0731880:CDS | 50.0% | |
| ! | GGAACCGTGACCAATCCTTT+TGG | + | chr5_1:43474799-43474818 | Msa0731880:CDS | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43474849-43474868 | Msa0731880:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43474895-43474914 | Msa0731880:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43474907-43474926 | None:intergenic | 50.0% | |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | chr5_1:43474906-43474925 | Msa0731880:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | chr5_1:43474909-43474928 | Msa0731880:CDS | 50.0% |
| ! | ACCGCCCCTAGTTCTTCTTA+TGG | + | chr5_1:43474265-43474284 | Msa0731880:CDS | 50.0% |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43474350-43474369 | Msa0731880:CDS | 50.0% |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43474393-43474412 | Msa0731880:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43474400-43474419 | None:intergenic | 50.0% | |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | - | chr5_1:43474678-43474697 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | - | chr5_1:43474679-43474698 | None:intergenic | 50.0% |
| !! | TTATTTGGTGCAACCAGGGC+CGG | - | chr5_1:43474730-43474749 | None:intergenic | 50.0% |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43474750-43474769 | Msa0731880:CDS | 50.0% | |
| ! | GGAACCGTGACCAATCCTTT+TGG | + | chr5_1:43474799-43474818 | Msa0731880:CDS | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43474849-43474868 | Msa0731880:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43474895-43474914 | Msa0731880:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43474907-43474926 | None:intergenic | 50.0% | |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | chr5_1:43474906-43474925 | Msa0731880:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | chr5_1:43474909-43474928 | Msa0731880:CDS | 50.0% |
| ! | TGCACCATTGGTTGCACCCA+GGG | + | chr5_1:43474405-43474424 | Msa0731880:CDS | 55.0% |
| GCCCCAAAAAATTGGAGGCC+CGG | + | chr5_1:43474674-43474693 | Msa0731880:intron | 55.0% | |
| !!! | GCACCGGGCCTCCAATTTTT+TGG | - | chr5_1:43474680-43474699 | None:intergenic | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43474856-43474875 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43474859-43474878 | Msa0731880:CDS | 55.0% |
| ! | TGCACCATTGGTTGCACCCA+GGG | + | chr5_1:43474405-43474424 | Msa0731880:CDS | 55.0% |
| GCCCCAAAAAATTGGAGGCC+CGG | + | chr5_1:43474674-43474693 | Msa0731880:intron | 55.0% | |
| !!! | GCACCGGGCCTCCAATTTTT+TGG | - | chr5_1:43474680-43474699 | None:intergenic | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43474856-43474875 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43474859-43474878 | Msa0731880:CDS | 55.0% |
| ! | GTTACACCCCCAGCTAGCCT+GGG | - | chr5_1:43474247-43474266 | None:intergenic | 60.0% |
| ! | GTGCACCATTGGTTGCACCC+AGG | + | chr5_1:43474404-43474423 | Msa0731880:CDS | 60.0% |
| ! | GTTACACCCCCAGCTAGCCT+GGG | - | chr5_1:43474247-43474266 | None:intergenic | 60.0% |
| ! | GTGCACCATTGGTTGCACCC+AGG | + | chr5_1:43474404-43474423 | Msa0731880:CDS | 60.0% |
| ! | GGCTAGAGCCCAGGCTAGCT+GGG | + | chr5_1:43474236-43474255 | Msa0731880:CDS | 65.0% |
| ! | GCTAGAGCCCAGGCTAGCTG+GGG | + | chr5_1:43474237-43474256 | Msa0731880:CDS | 65.0% |
| ! | CTAGAGCCCAGGCTAGCTGG+GGG | + | chr5_1:43474238-43474257 | Msa0731880:CDS | 65.0% |
| GGTTACACCCCCAGCTAGCC+TGG | - | chr5_1:43474248-43474267 | None:intergenic | 65.0% | |
| ACGGCCCTGGGTGCAACCAA+TGG | - | chr5_1:43474412-43474431 | None:intergenic | 65.0% | |
| ! | GGCTAGAGCCCAGGCTAGCT+GGG | + | chr5_1:43474236-43474255 | Msa0731880:CDS | 65.0% |
| ! | GCTAGAGCCCAGGCTAGCTG+GGG | + | chr5_1:43474237-43474256 | Msa0731880:CDS | 65.0% |
| ! | CTAGAGCCCAGGCTAGCTGG+GGG | + | chr5_1:43474238-43474257 | Msa0731880:CDS | 65.0% |
| GGTTACACCCCCAGCTAGCC+TGG | - | chr5_1:43474248-43474267 | None:intergenic | 65.0% | |
| ACGGCCCTGGGTGCAACCAA+TGG | - | chr5_1:43474412-43474431 | None:intergenic | 65.0% | |
| ! | CAGAGCCTGGGCTAGAGCCC+AGG | + | chr5_1:43474227-43474246 | Msa0731880:CDS | 70.0% |
| ! | GCTAGCCTGGGCTCTAGCCC+AGG | - | chr5_1:43474235-43474254 | None:intergenic | 70.0% |
| GGGCTAGAGCCCAGGCTAGC+TGG | + | chr5_1:43474235-43474254 | Msa0731880:CDS | 70.0% | |
| TCGAGGCTGGGCTACGGCAC+CGG | - | chr5_1:43474696-43474715 | None:intergenic | 70.0% | |
| GTGCCGTAGCCCAGCCTCGA+CGG | + | chr5_1:43474696-43474715 | Msa0731880:intron | 70.0% | |
| TGCCGTAGCCCAGCCTCGAC+GGG | + | chr5_1:43474697-43474716 | Msa0731880:intron | 70.0% | |
| AGCCCGTCGAGGCTGGGCTA+CGG | - | chr5_1:43474702-43474721 | None:intergenic | 70.0% | |
| !! | AGCCCAGCCTCGACGGGCTA+TGG | + | chr5_1:43474703-43474722 | Msa0731880:intron | 70.0% |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | + | chr5_1:43474704-43474723 | Msa0731880:intron | 70.0% |
| GCCCATAGCCCGTCGAGGCT+GGG | - | chr5_1:43474708-43474727 | None:intergenic | 70.0% | |
| !! | AGCCTCGACGGGCTATGGGC+CGG | + | chr5_1:43474708-43474727 | Msa0731880:CDS | 70.0% |
| ! | CAGAGCCTGGGCTAGAGCCC+AGG | + | chr5_1:43474227-43474246 | Msa0731880:CDS | 70.0% |
| ! | GCTAGCCTGGGCTCTAGCCC+AGG | - | chr5_1:43474235-43474254 | None:intergenic | 70.0% |
| GGGCTAGAGCCCAGGCTAGC+TGG | + | chr5_1:43474235-43474254 | Msa0731880:CDS | 70.0% | |
| TCGAGGCTGGGCTACGGCAC+CGG | - | chr5_1:43474696-43474715 | None:intergenic | 70.0% | |
| GTGCCGTAGCCCAGCCTCGA+CGG | + | chr5_1:43474696-43474715 | Msa0731880:intron | 70.0% | |
| TGCCGTAGCCCAGCCTCGAC+GGG | + | chr5_1:43474697-43474716 | Msa0731880:intron | 70.0% | |
| AGCCCGTCGAGGCTGGGCTA+CGG | - | chr5_1:43474702-43474721 | None:intergenic | 70.0% | |
| !! | AGCCCAGCCTCGACGGGCTA+TGG | + | chr5_1:43474703-43474722 | Msa0731880:intron | 70.0% |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | + | chr5_1:43474704-43474723 | Msa0731880:intron | 70.0% |
| GCCCATAGCCCGTCGAGGCT+GGG | - | chr5_1:43474708-43474727 | None:intergenic | 70.0% | |
| !! | AGCCTCGACGGGCTATGGGC+CGG | + | chr5_1:43474708-43474727 | Msa0731880:CDS | 70.0% |
| CGAGGCTGGGCTACGGCACC+GGG | - | chr5_1:43474695-43474714 | None:intergenic | 75.0% | |
| GGCCCATAGCCCGTCGAGGC+TGG | - | chr5_1:43474709-43474728 | None:intergenic | 75.0% | |
| CGAGGCTGGGCTACGGCACC+GGG | - | chr5_1:43474695-43474714 | None:intergenic | 75.0% | |
| GGCCCATAGCCCGTCGAGGC+TGG | - | chr5_1:43474709-43474728 | None:intergenic | 75.0% | |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | - | chr5_1:43474713-43474732 | None:intergenic | 80.0% |
| !!! | GACGGGCTATGGGCCGGCCC+TGG | + | chr5_1:43474714-43474733 | Msa0731880:CDS | 80.0% |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | - | chr5_1:43474713-43474732 | None:intergenic | 80.0% |
| !!! | GACGGGCTATGGGCCGGCCC+TGG | + | chr5_1:43474714-43474733 | Msa0731880:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43473998 | 43475038 | 43473998 | ID=Msa0731880;Name=Msa0731880 |
| chr5_1 | mRNA | 43473998 | 43475038 | 43473998 | ID=Msa0731880-mRNA-1;Parent=Msa0731880;Name=Msa0731880-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.66|1|1|3|0|221 |
| chr5_1 | exon | 43473998 | 43474093 | 43473998 | ID=Msa0731880-mRNA-1:exon:12406;Parent=Msa0731880-mRNA-1 |
| chr5_1 | exon | 43474217 | 43474452 | 43474217 | ID=Msa0731880-mRNA-1:exon:12407;Parent=Msa0731880-mRNA-1 |
| chr5_1 | exon | 43474705 | 43475038 | 43474705 | ID=Msa0731880-mRNA-1:exon:12408;Parent=Msa0731880-mRNA-1 |
| chr5_1 | CDS | 43473998 | 43474093 | 43473998 | ID=Msa0731880-mRNA-1:cds;Parent=Msa0731880-mRNA-1 |
| chr5_1 | CDS | 43474217 | 43474452 | 43474217 | ID=Msa0731880-mRNA-1:cds;Parent=Msa0731880-mRNA-1 |
| chr5_1 | CDS | 43474705 | 43475038 | 43474705 | ID=Msa0731880-mRNA-1:cds;Parent=Msa0731880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
