Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731890 | XP_003615144.1 | 80.380 | 316 | 11 | 1 | 1 | 265 | 1 | 316 | 1.36e-178 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731890 | sp|O82161|PHI1_TOBAC | 62.581 | 310 | 60 | 4 | 9 | 265 | 7 | 313 | 8.74e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731890 | G7KBC1 | 80.380 | 316 | 11 | 1 | 1 | 265 | 1 | 316 | 6.50e-179 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731890 | Msa0772920 | 0.810072 | 1.382275e-50 | -8.615850e-47 |
| Msa0731890 | Msa0772930 | 0.909622 | 4.644573e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731890 | MtrunA17_Chr5g0426441 | 80.064 | 311 | 11 | 1 | 6 | 265 | 648 | 958 | 5.33e-170 | 494 |
| Msa0731890 | MtrunA17_Chr5g0426441 | 77.532 | 316 | 19 | 2 | 1 | 265 | 25 | 339 | 2.74e-165 | 482 |
| Msa0731890 | MtrunA17_Chr5g0426441 | 77.814 | 311 | 17 | 2 | 6 | 265 | 339 | 648 | 2.37e-163 | 477 |
| Msa0731890 | MtrunA17_Chr3g0116001 | 67.007 | 294 | 39 | 4 | 20 | 265 | 21 | 304 | 5.99e-133 | 377 |
| Msa0731890 | MtrunA17_Chr3g0116011 | 66.667 | 294 | 40 | 4 | 20 | 265 | 21 | 304 | 4.20e-132 | 375 |
| Msa0731890 | MtrunA17_Chr3g0115951 | 60.772 | 311 | 67 | 4 | 9 | 265 | 8 | 317 | 6.49e-121 | 347 |
| Msa0731890 | MtrunA17_Chr4g0050321 | 54.676 | 278 | 75 | 4 | 32 | 265 | 30 | 300 | 1.01e-99 | 293 |
| Msa0731890 | MtrunA17_Chr2g0279311 | 49.196 | 311 | 104 | 6 | 1 | 265 | 2 | 304 | 2.72e-99 | 292 |
| Msa0731890 | MtrunA17_Chr1g0188071 | 29.338 | 317 | 156 | 7 | 6 | 262 | 33 | 341 | 7.40e-31 | 117 |
| Msa0731890 | MtrunA17_Chr4g0018171 | 29.433 | 282 | 138 | 8 | 25 | 250 | 53 | 329 | 1.41e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731890 | AT4G08950.1 | 60.535 | 299 | 57 | 7 | 24 | 265 | 20 | 314 | 1.04e-114 | 332 |
| Msa0731890 | AT1G35140.1 | 54.313 | 313 | 89 | 4 | 1 | 264 | 1 | 308 | 1.50e-112 | 327 |
| Msa0731890 | AT5G64260.1 | 51.827 | 301 | 98 | 4 | 10 | 265 | 7 | 305 | 1.59e-103 | 303 |
| Msa0731890 | AT5G09440.1 | 52.434 | 267 | 61 | 6 | 45 | 265 | 32 | 278 | 3.99e-83 | 251 |
| Msa0731890 | AT3G02970.1 | 27.946 | 297 | 131 | 6 | 47 | 263 | 37 | 330 | 9.16e-34 | 125 |
| Msa0731890 | AT5G51550.1 | 30.363 | 303 | 142 | 8 | 20 | 262 | 38 | 331 | 6.35e-33 | 123 |
| Msa0731890 | AT2G35150.1 | 29.560 | 318 | 155 | 10 | 9 | 261 | 3 | 316 | 1.60e-29 | 114 |
| Msa0731890 | AT2G17230.1 | 29.195 | 298 | 150 | 9 | 22 | 262 | 64 | 357 | 3.36e-23 | 97.4 |
Find 61 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAAGTTCGCGTATATT+TGG | 0.180098 | 5_1:+43490199 | Msa0731890:CDS |
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_1:+43490264 | Msa0731890:CDS |
| TCTTATGGTGCACGTGTAAA+TGG | 0.207934 | 5_1:+43490171 | Msa0731890:CDS |
| TCAAGACCTACATCGTTATT+TGG | 0.256091 | 5_1:-43490312 | None:intergenic |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_1:+43490156 | Msa0731890:CDS |
| TGGTTATGCTGGGGCCCTTT+TGG | 0.286824 | 5_1:+43490476 | Msa0731890:CDS |
| GAGGTTGATTGAGATATTTC+CGG | 0.297504 | 5_1:-43489796 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_1:-43490276 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_1:-43490411 | None:intergenic |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_1:+43490419 | Msa0731890:CDS |
| AAACAAGTTCGCGTATATTT+GGG | 0.369538 | 5_1:+43490200 | Msa0731890:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_1:+43490407 | Msa0731890:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_1:-43490264 | None:intergenic |
| ATATCTCAATCAACCTCATT+TGG | 0.389685 | 5_1:+43489802 | Msa0731890:CDS |
| CGGTGAGAAGAGGGCCTTTG+TGG | 0.401444 | 5_1:-43489776 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.412712 | 5_1:+43490465 | Msa0731890:CDS |
| TACAACGCTAATGGTGATAA+TGG | 0.420824 | 5_1:+43490522 | Msa0731890:CDS |
| GGAACGGTAACGAATCCTTT+TGG | 0.438734 | 5_1:+43490369 | Msa0731890:CDS |
| GATGTGGTTGTTCCTTGTTT+AGG | 0.441091 | 5_1:-43489888 | None:intergenic |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_1:-43489755 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_1:-43490384 | None:intergenic |
| CGCTAGAAAACTCACTGAAT+CGG | 0.469442 | 5_1:+43489731 | Msa0731890:CDS |
| TACGCTAAAGGAGCTTATCC+TGG | 0.473884 | 5_1:+43490456 | Msa0731890:CDS |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_1:+43490429 | Msa0731890:CDS |
| TGTACCGGTGTTTACGCTAA+AGG | 0.482677 | 5_1:+43490444 | Msa0731890:CDS |
| GCAACCAACGGTGCACTTTG+TGG | 0.494418 | 5_1:-43490288 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.498550 | 5_1:+43489807 | Msa0731890:CDS |
| AATAACGATGTAGGTCTTGA+CGG | 0.500974 | 5_1:+43490315 | Msa0731890:CDS |
| AACTTCAGCTTGTTCTACAT+TGG | 0.507055 | 5_1:+43490581 | Msa0731890:CDS |
| GGTGCTAGCTACAACGCTAA+TGG | 0.508260 | 5_1:+43490513 | Msa0731890:CDS |
| GAGCTTATCCTGGTTATGCT+GGG | 0.517406 | 5_1:+43490466 | Msa0731890:CDS |
| GGTTATGAAATCAGTTATGA+TGG | 0.539205 | 5_1:-43489853 | None:intergenic |
| CGATGTAGGTCTTGACGGAA+TGG | 0.541134 | 5_1:+43490320 | Msa0731890:CDS |
| AGATATTTCCGGTGAGAAGA+GGG | 0.541503 | 5_1:-43489785 | None:intergenic |
| AAGTTCGCGTATATTTGGGT+TGG | 0.543691 | 5_1:+43490204 | Msa0731890:CDS |
| TCGTTATTTGGTGCAACCAA+CGG | 0.547290 | 5_1:-43490300 | None:intergenic |
| AATTCTGAAACTCAATGTGC+TGG | 0.549654 | 5_1:+43490228 | Msa0731890:CDS |
| TTCCACCACGTGGCAACAGA+TGG | 0.552839 | 5_1:-43489915 | None:intergenic |
| GAGATATTTCCGGTGAGAAG+AGG | 0.553834 | 5_1:-43489786 | None:intergenic |
| GTTATGATGGCTCTTTGTGA+TGG | 0.558433 | 5_1:-43489840 | None:intergenic |
| CACAAAGGCCCTCTTCTCAC+CGG | 0.560896 | 5_1:+43489777 | Msa0731890:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_1:+43490144 | Msa0731890:intron |
| AAAAGGGCCCCAGCATAACC+AGG | 0.566264 | 5_1:-43490474 | None:intergenic |
| ACGCTAATGGTGATAATGGA+AGG | 0.567526 | 5_1:+43490526 | Msa0731890:CDS |
| CAGCTAAACTAGCTCTCGCT+AGG | 0.569630 | 5_1:+43489979 | Msa0731890:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.590478 | 5_1:+43490467 | Msa0731890:CDS |
| TGGTCCACAAAGTGCACCGT+TGG | 0.596808 | 5_1:+43490284 | Msa0731890:CDS |
| GTTGCACCAAATAACGATGT+AGG | 0.601769 | 5_1:+43490306 | Msa0731890:CDS |
| AACCATCTGTTGCCACGTGG+TGG | 0.604103 | 5_1:+43489913 | Msa0731890:CDS |
| TTGTTTAGGAGAAGAGAGTG+AGG | 0.609851 | 5_1:-43489874 | None:intergenic |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_1:-43490272 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_1:+43489762 | Msa0731890:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.635354 | 5_1:-43490161 | None:intergenic |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_1:-43489925 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_1:-43490423 | None:intergenic |
| TCACTCTCTTCTCCTAAACA+AGG | 0.648969 | 5_1:+43489876 | Msa0731890:CDS |
| TGCACCATAAGAAGAACCAT+GGG | 0.667974 | 5_1:-43490160 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.681885 | 5_1:+43490241 | Msa0731890:CDS |
| CACAACCATCTGTTGCCACG+TGG | 0.682786 | 5_1:+43489910 | Msa0731890:CDS |
| GGCAACAGATGGTTGTGATG+TGG | 0.684003 | 5_1:-43489904 | None:intergenic |
| AGCTCCTTTAGCGTAAACAC+CGG | 0.692829 | 5_1:-43490448 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGCTGATTTTTTATTGT+TGG | - | chr5_1:43489967-43489986 | None:intergenic | 20.0% |
| !!! | TTTAGCTGATTTTTTATTGT+TGG | - | chr5_1:43489967-43489986 | None:intergenic | 20.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43489758-43489777 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43489762-43489781 | Msa0731890:CDS | 25.0% |
| !!! | ATTTTTTATTGTTGGTGAGT+TGG | - | chr5_1:43489959-43489978 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43490387-43490406 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43490387-43490406 | Msa0731890:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43489758-43489777 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43489762-43489781 | Msa0731890:CDS | 25.0% |
| !!! | ATTTTTTATTGTTGGTGAGT+TGG | - | chr5_1:43489959-43489978 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43490387-43490406 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43490387-43490406 | Msa0731890:CDS | 25.0% |
| CAGTGAAATTGTGAGAAAAA+TGG | - | chr5_1:43489694-43489713 | None:intergenic | 30.0% | |
| ATATCTCAATCAACCTCATT+TGG | + | chr5_1:43489802-43489821 | Msa0731890:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43489818-43489837 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43489856-43489875 | None:intergenic | 30.0% | |
| TTGATGCAAGTTTAAGGATT+TGG | - | chr5_1:43490056-43490075 | None:intergenic | 30.0% | |
| ATCCTTAAACTTGCATCAAA+AGG | + | chr5_1:43490057-43490076 | Msa0731890:intron | 30.0% | |
| AAACAAGTTCGCGTATATTT+GGG | + | chr5_1:43490200-43490219 | Msa0731890:CDS | 30.0% | |
| CAGTGAAATTGTGAGAAAAA+TGG | - | chr5_1:43489694-43489713 | None:intergenic | 30.0% | |
| ATATCTCAATCAACCTCATT+TGG | + | chr5_1:43489802-43489821 | Msa0731890:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43489818-43489837 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43489856-43489875 | None:intergenic | 30.0% | |
| TTGATGCAAGTTTAAGGATT+TGG | - | chr5_1:43490056-43490075 | None:intergenic | 30.0% | |
| ATCCTTAAACTTGCATCAAA+AGG | + | chr5_1:43490057-43490076 | Msa0731890:intron | 30.0% | |
| AAACAAGTTCGCGTATATTT+GGG | + | chr5_1:43490200-43490219 | Msa0731890:CDS | 30.0% | |
| ! | GAGGTTGATTGAGATATTTC+CGG | - | chr5_1:43489799-43489818 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_1:43489807-43489826 | Msa0731890:CDS | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_1:43490012-43490031 | Msa0731890:intron | 35.0% | |
| ! | GTCCTTTTGATGCAAGTTTA+AGG | - | chr5_1:43490062-43490081 | None:intergenic | 35.0% |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43490130-43490149 | Msa0731890:intron | 35.0% |
| GAAACAAGTTCGCGTATATT+TGG | + | chr5_1:43490199-43490218 | Msa0731890:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43490228-43490247 | Msa0731890:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43490267-43490286 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43490264-43490283 | Msa0731890:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43490275-43490294 | None:intergenic | 35.0% | |
| TCAAGACCTACATCGTTATT+TGG | - | chr5_1:43490315-43490334 | None:intergenic | 35.0% | |
| AATAACGATGTAGGTCTTGA+CGG | + | chr5_1:43490315-43490334 | Msa0731890:CDS | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43490348-43490367 | Msa0731890:CDS | 35.0% |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_1:43490375-43490394 | Msa0731890:CDS | 35.0% |
| !!! | ACTTGTTTTGTCCACCAAAA+GGG | - | chr5_1:43490493-43490512 | None:intergenic | 35.0% |
| TACAACGCTAATGGTGATAA+TGG | + | chr5_1:43490522-43490541 | Msa0731890:CDS | 35.0% | |
| ! | GTAGAACAAGCTGAAGTTTT+AGG | - | chr5_1:43490579-43490598 | None:intergenic | 35.0% |
| ! | AACTTCAGCTTGTTCTACAT+TGG | + | chr5_1:43490581-43490600 | Msa0731890:CDS | 35.0% |
| ! | GAGGTTGATTGAGATATTTC+CGG | - | chr5_1:43489799-43489818 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_1:43489807-43489826 | Msa0731890:CDS | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_1:43490012-43490031 | Msa0731890:intron | 35.0% | |
| ! | GTCCTTTTGATGCAAGTTTA+AGG | - | chr5_1:43490062-43490081 | None:intergenic | 35.0% |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43490130-43490149 | Msa0731890:intron | 35.0% |
| GAAACAAGTTCGCGTATATT+TGG | + | chr5_1:43490199-43490218 | Msa0731890:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43490228-43490247 | Msa0731890:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43490267-43490286 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43490264-43490283 | Msa0731890:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43490275-43490294 | None:intergenic | 35.0% | |
| TCAAGACCTACATCGTTATT+TGG | - | chr5_1:43490315-43490334 | None:intergenic | 35.0% | |
| AATAACGATGTAGGTCTTGA+CGG | + | chr5_1:43490315-43490334 | Msa0731890:CDS | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43490348-43490367 | Msa0731890:CDS | 35.0% |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_1:43490375-43490394 | Msa0731890:CDS | 35.0% |
| !!! | ACTTGTTTTGTCCACCAAAA+GGG | - | chr5_1:43490493-43490512 | None:intergenic | 35.0% |
| TACAACGCTAATGGTGATAA+TGG | + | chr5_1:43490522-43490541 | Msa0731890:CDS | 35.0% | |
| ! | GTAGAACAAGCTGAAGTTTT+AGG | - | chr5_1:43490579-43490598 | None:intergenic | 35.0% |
| ! | AACTTCAGCTTGTTCTACAT+TGG | + | chr5_1:43490581-43490600 | Msa0731890:CDS | 35.0% |
| ! | CGATTCAGTGAGTTTTCTAG+CGG | - | chr5_1:43489733-43489752 | None:intergenic | 40.0% |
| CGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43489731-43489750 | Msa0731890:CDS | 40.0% | |
| AGATATTTCCGGTGAGAAGA+GGG | - | chr5_1:43489788-43489807 | None:intergenic | 40.0% | |
| GTTATGATGGCTCTTTGTGA+TGG | - | chr5_1:43489843-43489862 | None:intergenic | 40.0% | |
| TTGTTTAGGAGAAGAGAGTG+AGG | - | chr5_1:43489877-43489896 | None:intergenic | 40.0% | |
| TCACTCTCTTCTCCTAAACA+AGG | + | chr5_1:43489876-43489895 | Msa0731890:CDS | 40.0% | |
| ! | GATGTGGTTGTTCCTTGTTT+AGG | - | chr5_1:43489891-43489910 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_1:43490097-43490116 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43490135-43490154 | Msa0731890:intron | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43490163-43490182 | None:intergenic | 40.0% | |
| TCTTATGGTGCACGTGTAAA+TGG | + | chr5_1:43490171-43490190 | Msa0731890:CDS | 40.0% | |
| AAGTTCGCGTATATTTGGGT+TGG | + | chr5_1:43490204-43490223 | Msa0731890:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43490279-43490298 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+CGG | - | chr5_1:43490303-43490322 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+AGG | + | chr5_1:43490306-43490325 | Msa0731890:CDS | 40.0% | |
| !!! | TGCTAGTCTTTTAGCTGGAA+CGG | + | chr5_1:43490353-43490372 | Msa0731890:CDS | 40.0% |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43490494-43490513 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43490492-43490511 | Msa0731890:CDS | 40.0% |
| !! | ACGCTAATGGTGATAATGGA+AGG | + | chr5_1:43490526-43490545 | Msa0731890:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43490564-43490583 | None:intergenic | 40.0% |
| ! | CGATTCAGTGAGTTTTCTAG+CGG | - | chr5_1:43489733-43489752 | None:intergenic | 40.0% |
| CGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43489731-43489750 | Msa0731890:CDS | 40.0% | |
| AGATATTTCCGGTGAGAAGA+GGG | - | chr5_1:43489788-43489807 | None:intergenic | 40.0% | |
| GTTATGATGGCTCTTTGTGA+TGG | - | chr5_1:43489843-43489862 | None:intergenic | 40.0% | |
| TTGTTTAGGAGAAGAGAGTG+AGG | - | chr5_1:43489877-43489896 | None:intergenic | 40.0% | |
| TCACTCTCTTCTCCTAAACA+AGG | + | chr5_1:43489876-43489895 | Msa0731890:CDS | 40.0% | |
| ! | GATGTGGTTGTTCCTTGTTT+AGG | - | chr5_1:43489891-43489910 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_1:43490097-43490116 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43490135-43490154 | Msa0731890:intron | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43490163-43490182 | None:intergenic | 40.0% | |
| TCTTATGGTGCACGTGTAAA+TGG | + | chr5_1:43490171-43490190 | Msa0731890:CDS | 40.0% | |
| AAGTTCGCGTATATTTGGGT+TGG | + | chr5_1:43490204-43490223 | Msa0731890:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43490279-43490298 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+CGG | - | chr5_1:43490303-43490322 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+AGG | + | chr5_1:43490306-43490325 | Msa0731890:CDS | 40.0% | |
| !!! | TGCTAGTCTTTTAGCTGGAA+CGG | + | chr5_1:43490353-43490372 | Msa0731890:CDS | 40.0% |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43490494-43490513 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43490492-43490511 | Msa0731890:CDS | 40.0% |
| !! | ACGCTAATGGTGATAATGGA+AGG | + | chr5_1:43490526-43490545 | Msa0731890:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43490564-43490583 | None:intergenic | 40.0% |
| GAGATATTTCCGGTGAGAAG+AGG | - | chr5_1:43489789-43489808 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43489928-43489947 | None:intergenic | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43490114-43490133 | Msa0731890:intron | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43490156-43490175 | Msa0731890:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43490164-43490183 | None:intergenic | 45.0% | |
| ! | GGAACGGTAACGAATCCTTT+TGG | + | chr5_1:43490369-43490388 | Msa0731890:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43490407-43490426 | Msa0731890:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43490414-43490433 | None:intergenic | 45.0% |
| ! | TGTACCGGTGTTTACGCTAA+AGG | + | chr5_1:43490444-43490463 | Msa0731890:CDS | 45.0% |
| AGCTCCTTTAGCGTAAACAC+CGG | - | chr5_1:43490451-43490470 | None:intergenic | 45.0% | |
| TACGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43490456-43490475 | Msa0731890:CDS | 45.0% | |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43490466-43490485 | Msa0731890:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43490467-43490486 | Msa0731890:CDS | 45.0% | |
| GAGATATTTCCGGTGAGAAG+AGG | - | chr5_1:43489789-43489808 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43489928-43489947 | None:intergenic | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43490114-43490133 | Msa0731890:intron | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43490156-43490175 | Msa0731890:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43490164-43490183 | None:intergenic | 45.0% | |
| ! | GGAACGGTAACGAATCCTTT+TGG | + | chr5_1:43490369-43490388 | Msa0731890:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43490407-43490426 | Msa0731890:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43490414-43490433 | None:intergenic | 45.0% |
| ! | TGTACCGGTGTTTACGCTAA+AGG | + | chr5_1:43490444-43490463 | Msa0731890:CDS | 45.0% |
| AGCTCCTTTAGCGTAAACAC+CGG | - | chr5_1:43490451-43490470 | None:intergenic | 45.0% | |
| TACGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43490456-43490475 | Msa0731890:CDS | 45.0% | |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43490466-43490485 | Msa0731890:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43490467-43490486 | Msa0731890:CDS | 45.0% | |
| GGCAACAGATGGTTGTGATG+TGG | - | chr5_1:43489907-43489926 | None:intergenic | 50.0% | |
| ! | CAGCTAAACTAGCTCTCGCT+AGG | + | chr5_1:43489979-43489998 | Msa0731890:CDS | 50.0% |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43490144-43490163 | Msa0731890:intron | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43490241-43490260 | Msa0731890:CDS | 50.0% |
| CGATGTAGGTCTTGACGGAA+TGG | + | chr5_1:43490320-43490339 | Msa0731890:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43490419-43490438 | Msa0731890:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43490465-43490484 | Msa0731890:CDS | 50.0% | |
| GGTGCTAGCTACAACGCTAA+TGG | + | chr5_1:43490513-43490532 | Msa0731890:CDS | 50.0% | |
| GGCAACAGATGGTTGTGATG+TGG | - | chr5_1:43489907-43489926 | None:intergenic | 50.0% | |
| ! | CAGCTAAACTAGCTCTCGCT+AGG | + | chr5_1:43489979-43489998 | Msa0731890:CDS | 50.0% |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43490144-43490163 | Msa0731890:intron | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43490241-43490260 | Msa0731890:CDS | 50.0% |
| CGATGTAGGTCTTGACGGAA+TGG | + | chr5_1:43490320-43490339 | Msa0731890:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43490419-43490438 | Msa0731890:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43490465-43490484 | Msa0731890:CDS | 50.0% | |
| GGTGCTAGCTACAACGCTAA+TGG | + | chr5_1:43490513-43490532 | Msa0731890:CDS | 50.0% | |
| CACAAAGGCCCTCTTCTCAC+CGG | + | chr5_1:43489777-43489796 | Msa0731890:CDS | 55.0% | |
| CACAACCATCTGTTGCCACG+TGG | + | chr5_1:43489910-43489929 | Msa0731890:CDS | 55.0% | |
| AACCATCTGTTGCCACGTGG+TGG | + | chr5_1:43489913-43489932 | Msa0731890:CDS | 55.0% | |
| TTCCACCACGTGGCAACAGA+TGG | - | chr5_1:43489918-43489937 | None:intergenic | 55.0% | |
| TGGTCCACAAAGTGCACCGT+TGG | + | chr5_1:43490284-43490303 | Msa0731890:CDS | 55.0% | |
| GCAACCAACGGTGCACTTTG+TGG | - | chr5_1:43490291-43490310 | None:intergenic | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43490426-43490445 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43490429-43490448 | Msa0731890:CDS | 55.0% |
| AAAAGGGCCCCAGCATAACC+AGG | - | chr5_1:43490477-43490496 | None:intergenic | 55.0% | |
| ! | TGGTTATGCTGGGGCCCTTT+TGG | + | chr5_1:43490476-43490495 | Msa0731890:CDS | 55.0% |
| ! | TTATGCTGGGGCCCTTTTGG+TGG | + | chr5_1:43490479-43490498 | Msa0731890:CDS | 55.0% |
| CACAAAGGCCCTCTTCTCAC+CGG | + | chr5_1:43489777-43489796 | Msa0731890:CDS | 55.0% | |
| CACAACCATCTGTTGCCACG+TGG | + | chr5_1:43489910-43489929 | Msa0731890:CDS | 55.0% | |
| AACCATCTGTTGCCACGTGG+TGG | + | chr5_1:43489913-43489932 | Msa0731890:CDS | 55.0% | |
| TTCCACCACGTGGCAACAGA+TGG | - | chr5_1:43489918-43489937 | None:intergenic | 55.0% | |
| TGGTCCACAAAGTGCACCGT+TGG | + | chr5_1:43490284-43490303 | Msa0731890:CDS | 55.0% | |
| GCAACCAACGGTGCACTTTG+TGG | - | chr5_1:43490291-43490310 | None:intergenic | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43490426-43490445 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43490429-43490448 | Msa0731890:CDS | 55.0% |
| AAAAGGGCCCCAGCATAACC+AGG | - | chr5_1:43490477-43490496 | None:intergenic | 55.0% | |
| ! | TGGTTATGCTGGGGCCCTTT+TGG | + | chr5_1:43490476-43490495 | Msa0731890:CDS | 55.0% |
| ! | TTATGCTGGGGCCCTTTTGG+TGG | + | chr5_1:43490479-43490498 | Msa0731890:CDS | 55.0% |
| CGGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43489779-43489798 | None:intergenic | 60.0% | |
| CGGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43489779-43489798 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43489660 | 43490608 | 43489660 | ID=Msa0731890;Name=Msa0731890 |
| chr5_1 | mRNA | 43489660 | 43490608 | 43489660 | ID=Msa0731890-mRNA-1;Parent=Msa0731890;Name=Msa0731890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|2|0|265 |
| chr5_1 | exon | 43489660 | 43490000 | 43489660 | ID=Msa0731890-mRNA-1:exon:12430;Parent=Msa0731890-mRNA-1 |
| chr5_1 | exon | 43490152 | 43490608 | 43490152 | ID=Msa0731890-mRNA-1:exon:12431;Parent=Msa0731890-mRNA-1 |
| chr5_1 | CDS | 43489660 | 43490000 | 43489660 | ID=Msa0731890-mRNA-1:cds;Parent=Msa0731890-mRNA-1 |
| chr5_1 | CDS | 43490152 | 43490608 | 43490152 | ID=Msa0731890-mRNA-1:cds;Parent=Msa0731890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
