Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740550 | XP_003617136.1 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 1.62e-29 | 119 |
| Msa0740550 | XP_003617136.1 | 95.455 | 110 | 5 | 0 | 53 | 162 | 167 | 276 | 2.79e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740550 | sp|Q84VQ1|KINB1_ARATH | 66.038 | 106 | 35 | 1 | 57 | 162 | 179 | 283 | 7.42e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740550 | Q7XYX8 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 7.75e-30 | 119 |
| Msa0740550 | Q7XYX8 | 95.455 | 110 | 5 | 0 | 53 | 162 | 167 | 276 | 1.33e-65 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0454880 | Msa0740550 | -0.814799 | 1.281427e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740550 | MtrunA17_Chr5g0440861 | 95.455 | 110 | 5 | 0 | 53 | 162 | 274 | 383 | 1.48e-68 | 212 |
| Msa0740550 | MtrunA17_Chr5g0440861 | 100.000 | 57 | 0 | 0 | 1 | 57 | 108 | 164 | 3.86e-33 | 120 |
| Msa0740550 | MtrunA17_Chr2g0290481 | 51.376 | 109 | 50 | 1 | 57 | 162 | 179 | 287 | 2.95e-28 | 105 |
| Msa0740550 | MtrunA17_Chr4g0076291 | 55.046 | 109 | 46 | 2 | 57 | 162 | 131 | 239 | 2.57e-27 | 102 |
| Msa0740550 | MtrunA17_Chr2g0327201 | 45.455 | 99 | 52 | 2 | 66 | 162 | 25 | 123 | 6.16e-22 | 85.5 |
| Msa0740550 | MtrunA17_Chr5g0448251 | 39.474 | 114 | 59 | 4 | 53 | 162 | 165 | 272 | 4.99e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740550 | AT5G21170.3 | 66.038 | 106 | 35 | 1 | 57 | 162 | 135 | 239 | 3.01e-46 | 151 |
| Msa0740550 | AT5G21170.1 | 66.038 | 106 | 35 | 1 | 57 | 162 | 179 | 283 | 7.54e-46 | 151 |
| Msa0740550 | AT5G21170.2 | 66.038 | 106 | 35 | 1 | 57 | 162 | 216 | 320 | 1.48e-45 | 152 |
| Msa0740550 | AT2G28060.2 | 47.423 | 97 | 50 | 1 | 66 | 162 | 13 | 108 | 8.09e-24 | 90.1 |
| Msa0740550 | AT2G28060.4 | 47.423 | 97 | 50 | 1 | 66 | 162 | 13 | 108 | 8.09e-24 | 90.1 |
| Msa0740550 | AT2G28060.3 | 47.423 | 97 | 50 | 1 | 66 | 162 | 13 | 108 | 8.09e-24 | 90.1 |
| Msa0740550 | AT2G28060.1 | 47.423 | 97 | 50 | 1 | 66 | 162 | 13 | 108 | 8.09e-24 | 90.1 |
Find 49 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGACCATAACTAGATTC+TGG | 0.316796 | 5_1:-59554253 | None:intergenic |
| CTAGAACGACGAGGACTTTG+AGG | 0.403810 | 5_1:-59550155 | None:intergenic |
| TTTGCAAAGTCTTCCTCAGC+TGG | 0.416645 | 5_1:-59554280 | None:intergenic |
| CTTGACCATAACTAGATTCT+GGG | 0.418244 | 5_1:-59554252 | None:intergenic |
| TCTAGATCGCCGATCCTCTT+CGG | 0.421408 | 5_1:+59550173 | Msa0740550:CDS |
| GCCGATCCTCTTCGGTCCTC+AGG | 0.427622 | 5_1:+59550181 | Msa0740550:CDS |
| CCCGACGCCGGCGATCCTTC+CGG | 0.436756 | 5_1:+59550068 | Msa0740550:CDS |
| CCGGAAGGATCGCCGGCGTC+GGG | 0.437825 | 5_1:-59550068 | None:intergenic |
| TGAGAGTGTGTCTGAGTTTG+AGG | 0.440800 | 5_1:+59554219 | Msa0740550:CDS |
| AGGACTTTGAGGCGGACTAT+TGG | 0.442021 | 5_1:-59550144 | None:intergenic |
| CAGCTGCATCTTACAGTCCT+AGG | 0.454992 | 5_1:+59554325 | Msa0740550:CDS |
| TTGCCATGGGAGTGACTCAC+AGG | 0.457040 | 5_1:+59554443 | Msa0740550:CDS |
| TCAAACTCAGACACACTCTC+AGG | 0.472555 | 5_1:-59554217 | None:intergenic |
| ACCTCTTGAGAGGTTTGTAA+AGG | 0.484885 | 5_1:-59554492 | None:intergenic |
| CCCTCCCCAGAATCTAGTTA+TGG | 0.487999 | 5_1:+59554247 | Msa0740550:CDS |
| CTCAAAATCTGTTGTTGCCA+TGG | 0.498636 | 5_1:+59554429 | Msa0740550:CDS |
| AACAATATGGGAAACGCTAA+CGG | 0.513258 | 5_1:+59550026 | None:intergenic |
| CGGACTATTGGCCATTGAAT+CGG | 0.516627 | 5_1:-59550132 | None:intergenic |
| ACCGGAAGGATCGCCGGCGT+CGG | 0.520401 | 5_1:-59550069 | None:intergenic |
| ACCTGAGGACCGAAGAGGAT+CGG | 0.523080 | 5_1:-59550182 | None:intergenic |
| TTCACGACCGGAAGGATCGC+CGG | 0.535512 | 5_1:-59550075 | None:intergenic |
| AGCTGCGAAGGAACAGCCAT+TGG | 0.538490 | 5_1:-59554307 | None:intergenic |
| AACGCTAACGGAAGAGAAGA+CGG | 0.542108 | 5_1:+59550038 | Msa0740550:CDS |
| TCAAAATCTGTTGTTGCCAT+GGG | 0.544837 | 5_1:+59554430 | Msa0740550:CDS |
| CGAATAGGAGGTGGCGCGTG+AGG | 0.554867 | 5_1:-59550098 | None:intergenic |
| CAACTGTCACATATTTCGAC+TGG | 0.562286 | 5_1:-59554468 | None:intergenic |
| TCCTTTACAAACCTCTCAAG+AGG | 0.566470 | 5_1:+59554491 | Msa0740550:CDS |
| ACTGTAAGATGCAGCTGCGA+AGG | 0.575116 | 5_1:-59554319 | None:intergenic |
| CATCAGCGTTCTCCATGCCT+AGG | 0.578578 | 5_1:-59554342 | None:intergenic |
| ACATGTTGAGGCTTTGAAGA+GGG | 0.581687 | 5_1:-59554370 | None:intergenic |
| AGACTTTGCAAAAGAGCCAA+TGG | 0.589225 | 5_1:+59554291 | Msa0740550:CDS |
| TGATTTAGCACAACATGTTG+AGG | 0.589623 | 5_1:-59554382 | None:intergenic |
| GACGGAGCTATTCCCGACGC+CGG | 0.592151 | 5_1:+59550056 | Msa0740550:CDS |
| TCACATATTTACCTCTTGAG+AGG | 0.598865 | 5_1:-59554502 | None:intergenic |
| GGCATGGAGAACGCTGATGT+CGG | 0.607321 | 5_1:+59554346 | Msa0740550:CDS |
| GCATCTTACAGTCCTAGGCA+TGG | 0.612059 | 5_1:+59554330 | Msa0740550:CDS |
| CCATAACTAGATTCTGGGGA+GGG | 0.614018 | 5_1:-59554247 | None:intergenic |
| AACATGTTGAGGCTTTGAAG+AGG | 0.620499 | 5_1:-59554371 | None:intergenic |
| TGGCGCGTGAGGTTCACGAC+CGG | 0.625510 | 5_1:-59550087 | None:intergenic |
| CAAACTCAGACACACTCTCA+GGG | 0.625705 | 5_1:-59554216 | None:intergenic |
| TAACTAGATTCTGGGGAGGG+TGG | 0.630608 | 5_1:-59554244 | None:intergenic |
| GCGTGAGGTTCACGACCGGA+AGG | 0.633347 | 5_1:-59550083 | None:intergenic |
| GAACCTGTGAGTCACTCCCA+TGG | 0.651519 | 5_1:-59554446 | None:intergenic |
| ACCATAACTAGATTCTGGGG+AGG | 0.658558 | 5_1:-59554248 | None:intergenic |
| TGGTCAAGCATATCCAGCTG+AGG | 0.675215 | 5_1:+59554267 | Msa0740550:CDS |
| GAACGACGAGGACTTTGAGG+CGG | 0.686219 | 5_1:-59550152 | None:intergenic |
| AGCGAACCTGAGGACCGAAG+AGG | 0.695965 | 5_1:-59550187 | None:intergenic |
| TTGACCATAACTAGATTCTG+GGG | 0.696722 | 5_1:-59554251 | None:intergenic |
| ATCGGCGATCTAGAACGACG+AGG | 0.792554 | 5_1:-59550164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACCTTTTTTTATTTTTTTT+TGG | + | chr5_1:59552915-59552934 | Msa0740550:intron | 10.0% |
| !! | GAATTAAATTAAATGCTAAT+AGG | + | chr5_1:59550393-59550412 | Msa0740550:intron | 15.0% |
| !! | TTTACAAGAAAAAAATTATG+TGG | - | chr5_1:59551239-59551258 | None:intergenic | 15.0% |
| !!! | TATTTAAGATTGAAATGTTT+TGG | - | chr5_1:59552487-59552506 | None:intergenic | 15.0% |
| !! | AGCCAAAAAAAAATAAAAAA+AGG | - | chr5_1:59552920-59552939 | None:intergenic | 15.0% |
| !!! | AATAGTTCTAAAATGTTTAT+AGG | - | chr5_1:59553262-59553281 | None:intergenic | 15.0% |
| !! | AAACATTTATTACAATTACA+AGG | - | chr5_1:59554037-59554056 | None:intergenic | 15.0% |
| !!! | TTTTCTGAATTTTTGTTATG+CGG | + | chr5_1:59550248-59550267 | Msa0740550:intron | 20.0% |
| !! | GATTATTCTGTTTGTTTAAT+TGG | + | chr5_1:59550463-59550482 | Msa0740550:intron | 20.0% |
| !! | AATAATCTACAGTTTAAACT+TGG | - | chr5_1:59550595-59550614 | None:intergenic | 20.0% |
| !! | ATTACGTGTGTTAAATTAAA+CGG | + | chr5_1:59550612-59550631 | Msa0740550:intron | 20.0% |
| !!! | TTATTTATTGATTGATCGAT+TGG | + | chr5_1:59550653-59550672 | Msa0740550:intron | 20.0% |
| !! | TTTCAAAATGAATTAATGTG+TGG | + | chr5_1:59550721-59550740 | Msa0740550:intron | 20.0% |
| !!! | TTAATAATGCAATCTCATTT+TGG | + | chr5_1:59550931-59550950 | Msa0740550:intron | 20.0% |
| !! | AATTAATGTGAATTTCGAAA+TGG | - | chr5_1:59551334-59551353 | None:intergenic | 20.0% |
| !! | TTACAATTATACACAACATA+TGG | - | chr5_1:59551493-59551512 | None:intergenic | 20.0% |
| !! | ATAGTGTTTCACTTATAAAA+TGG | - | chr5_1:59551666-59551685 | None:intergenic | 20.0% |
| !!! | ATTTTATAAGTGAAACACTA+TGG | + | chr5_1:59551665-59551684 | Msa0740550:intron | 20.0% |
| !! | ATTCACCTAAAATTTACAAA+AGG | - | chr5_1:59552265-59552284 | None:intergenic | 20.0% |
| !!! | TTTTGTAAATTTTAGGTGAA+TGG | + | chr5_1:59552264-59552283 | Msa0740550:intron | 20.0% |
| !!! | TTTTTTACCCTTTCATATAT+AGG | + | chr5_1:59552325-59552344 | Msa0740550:intron | 20.0% |
| !! | AAAAAAAAACCATCAATATG+TGG | + | chr5_1:59552424-59552443 | Msa0740550:intron | 20.0% |
| !! | TTCAATCTTAAATAAAAGAG+TGG | + | chr5_1:59552493-59552512 | Msa0740550:intron | 20.0% |
| !! | TATAATAAGAAAATGCTATG+AGG | - | chr5_1:59552523-59552542 | None:intergenic | 20.0% |
| !! | ATTTAAATGTGTCATGATTA+GGG | - | chr5_1:59552574-59552593 | None:intergenic | 20.0% |
| !! | AATTTAAATGTGTCATGATT+AGG | - | chr5_1:59552575-59552594 | None:intergenic | 20.0% |
| !!! | ATTGAAAAGAAGAGATTTTT+GGG | - | chr5_1:59552755-59552774 | None:intergenic | 20.0% |
| !!! | TATTGAAAAGAAGAGATTTT+TGG | - | chr5_1:59552756-59552775 | None:intergenic | 20.0% |
| !!! | AAAAATCTCTTCTTTTCAAT+AGG | + | chr5_1:59552755-59552774 | Msa0740550:intron | 20.0% |
| !! | TTTAAATTTACAGAACTAGT+TGG | - | chr5_1:59553015-59553034 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTATGTCATATG+TGG | + | chr5_1:59553417-59553436 | Msa0740550:intron | 20.0% |
| !! | GATTAACAACTTCAAATTTA+TGG | - | chr5_1:59553650-59553669 | None:intergenic | 20.0% |
| !!! | CAAATCATTTTCATTAAATG+AGG | - | chr5_1:59554141-59554160 | None:intergenic | 20.0% |
| !! | AAGAACATCAAATCATTAAA+TGG | - | chr5_1:59554168-59554187 | None:intergenic | 20.0% |
| ! | TATTCTGTTTGTTTAATTGG+TGG | + | chr5_1:59550466-59550485 | Msa0740550:intron | 25.0% |
| !! | GATTCTGTTATTGATTGATT+TGG | + | chr5_1:59550496-59550515 | Msa0740550:intron | 25.0% |
| !!! | TATAGTTGATGAATGTGATT+TGG | + | chr5_1:59550544-59550563 | Msa0740550:intron | 25.0% |
| !! | AATGTGATTTGGATTGAATT+AGG | + | chr5_1:59550555-59550574 | Msa0740550:intron | 25.0% |
| !!! | TGTTTGAAGATTTTGAAGAA+CGG | + | chr5_1:59550849-59550868 | Msa0740550:intron | 25.0% |
| !!! | TGTTTGTTTTCAAGTTAAAC+AGG | - | chr5_1:59551103-59551122 | None:intergenic | 25.0% |
| !!! | TGTTTAACTTGAAAACAAAC+AGG | + | chr5_1:59551102-59551121 | Msa0740550:intron | 25.0% |
| !!! | TGTTTGTTTTCAAGTTCAAT+GGG | - | chr5_1:59551152-59551171 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTGTAAAACACG+TGG | + | chr5_1:59551244-59551263 | Msa0740550:intron | 25.0% |
| ! | GAAATTCACATTAATTGTTC+TGG | + | chr5_1:59551338-59551357 | Msa0740550:intron | 25.0% |
| !! | TTATATTGATCCCATTGATT+TGG | + | chr5_1:59552011-59552030 | Msa0740550:intron | 25.0% |
| !!! | CTTTTAAAATTTACTGGACA+TGG | - | chr5_1:59552183-59552202 | None:intergenic | 25.0% |
| !!! | TCTGGTCTTTTAAAATTTAC+TGG | - | chr5_1:59552189-59552208 | None:intergenic | 25.0% |
| !! | TACTGCCTTTTGTAAATTTT+AGG | + | chr5_1:59552257-59552276 | Msa0740550:intron | 25.0% |
| ! | AAACTTGCCTATATATGAAA+GGG | - | chr5_1:59552335-59552354 | None:intergenic | 25.0% |
| ! | AAAACTTGCCTATATATGAA+AGG | - | chr5_1:59552336-59552355 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTTTACCGACT+AGG | - | chr5_1:59552414-59552433 | None:intergenic | 25.0% |
| ! | TATTCCAACAACTTTGTATT+TGG | + | chr5_1:59552548-59552567 | Msa0740550:intron | 25.0% |
| !!! | TCATGAAATCTAACTTGTTT+TGG | - | chr5_1:59552656-59552675 | None:intergenic | 25.0% |
| !! | TGTTGTAATTTAAAGCTAAG+TGG | - | chr5_1:59552973-59552992 | None:intergenic | 25.0% |
| ! | AATATAGACTGAGGAAATAT+TGG | + | chr5_1:59553452-59553471 | Msa0740550:intron | 25.0% |
| !! | TTTGAAGTTGTTAATCAGTA+AGG | + | chr5_1:59553654-59553673 | Msa0740550:intron | 25.0% |
| ! | TTGATTGTTTGATTATGATG+AGG | + | chr5_1:59554106-59554125 | Msa0740550:intron | 25.0% |
| ! | TGTCTTCATAGAGAAAAATA+TGG | + | chr5_1:59554405-59554424 | Msa0740550:CDS | 25.0% |
| AAATGAAATAACGAAGAACG+AGG | - | chr5_1:59550223-59550242 | None:intergenic | 30.0% | |
| ! | AGGTAATTTTGTTGAAACTG+TGG | + | chr5_1:59550413-59550432 | Msa0740550:intron | 30.0% |
| ! | TTTTGGACATACAAATCACA+TGG | - | chr5_1:59550754-59550773 | None:intergenic | 30.0% |
| TGTCCAAAACTTGATTAGAT+AGG | + | chr5_1:59550765-59550784 | Msa0740550:intron | 30.0% | |
| GTCCAAAACTTGATTAGATA+GGG | + | chr5_1:59550766-59550785 | Msa0740550:intron | 30.0% | |
| ! | TTCCCTATCTAATCAAGTTT+TGG | - | chr5_1:59550771-59550790 | None:intergenic | 30.0% |
| GAGATTGCATTATTAATGCA+AGG | - | chr5_1:59550927-59550946 | None:intergenic | 30.0% | |
| TTTACCAAACTTACTAACGT+AGG | + | chr5_1:59550975-59550994 | Msa0740550:intron | 30.0% | |
| TTACCAAACTTACTAACGTA+GGG | + | chr5_1:59550976-59550995 | Msa0740550:intron | 30.0% | |
| ! | CTTTTAAATGTATGCATGCT+TGG | - | chr5_1:59551018-59551037 | None:intergenic | 30.0% |
| ! | GATTTCTTGTTTATGGTCAA+CGG | - | chr5_1:59551065-59551084 | None:intergenic | 30.0% |
| !!! | CTGTTTGTTTTCAAGTTCAA+TGG | - | chr5_1:59551153-59551172 | None:intergenic | 30.0% |
| ACGCTACATATACAATTATC+TGG | - | chr5_1:59551307-59551326 | None:intergenic | 30.0% | |
| CATTAATTGTTCTGGTCTAA+CGG | + | chr5_1:59551346-59551365 | Msa0740550:intron | 30.0% | |
| !!! | TCTGTTGATTTTGTCCATTT+TGG | + | chr5_1:59551375-59551394 | Msa0740550:intron | 30.0% |
| !! | TTTTGTCCATTTTGGAAATC+AGG | + | chr5_1:59551383-59551402 | Msa0740550:intron | 30.0% |
| ACAATTTACACACTTGATCA+AGG | - | chr5_1:59551427-59551446 | None:intergenic | 30.0% | |
| AAATTGTGAAATGAGCTGTT+TGG | + | chr5_1:59551440-59551459 | Msa0740550:intron | 30.0% | |
| AGAAATAACACATGCAGTAT+TGG | + | chr5_1:59551764-59551783 | Msa0740550:intron | 30.0% | |
| TTACGAAATCCAAAATTGCT+AGG | - | chr5_1:59551824-59551843 | None:intergenic | 30.0% | |
| TGCACAAAAAATCTTGTATG+CGG | + | chr5_1:59551867-59551886 | Msa0740550:intron | 30.0% | |
| GATCAATATAAAGTGTACAC+AGG | - | chr5_1:59552002-59552021 | None:intergenic | 30.0% | |
| TGAGCAATTTCCAAATCAAT+GGG | - | chr5_1:59552024-59552043 | None:intergenic | 30.0% | |
| ATGAGCAATTTCCAAATCAA+TGG | - | chr5_1:59552025-59552044 | None:intergenic | 30.0% | |
| CTTTATTCCTGGTCATTATT+TGG | + | chr5_1:59552051-59552070 | Msa0740550:intron | 30.0% | |
| GAAAATTCCAAATAATGACC+AGG | - | chr5_1:59552061-59552080 | None:intergenic | 30.0% | |
| ! | CCAAACAAAACATTTTCTCT+CGG | - | chr5_1:59552110-59552129 | None:intergenic | 30.0% |
| !! | AAGTTGATAAAATACGAGTC+TGG | - | chr5_1:59552207-59552226 | None:intergenic | 30.0% |
| AAAAGGCAGTAAAATAGTGA+AGG | - | chr5_1:59552248-59552267 | None:intergenic | 30.0% | |
| GTGCACAATTTCATTTAACA+TGG | + | chr5_1:59552290-59552309 | Msa0740550:intron | 30.0% | |
| ! | ATATATAGGCAAGTTTTCCT+TGG | + | chr5_1:59552339-59552358 | Msa0740550:intron | 30.0% |
| !! | CCGACTAGGAAATTATTTTT+CGG | - | chr5_1:59552400-59552419 | None:intergenic | 30.0% |
| CCGAAAAATAATTTCCTAGT+CGG | + | chr5_1:59552397-59552416 | Msa0740550:intron | 30.0% | |
| !! | AGTCATTTTCCACATATTGA+TGG | - | chr5_1:59552436-59552455 | None:intergenic | 30.0% |
| TTGGAAAACAATTTCCACAA+TGG | - | chr5_1:59552468-59552487 | None:intergenic | 30.0% | |
| TGACTATTTGATTCCAAATC+TGG | + | chr5_1:59552612-59552631 | Msa0740550:intron | 30.0% | |
| AACTATCATGTTTCCAGATT+TGG | - | chr5_1:59552628-59552647 | None:intergenic | 30.0% | |
| !!! | GAAATCTAACTTGTTTTGGA+GGG | - | chr5_1:59552652-59552671 | None:intergenic | 30.0% |
| !!! | TGAAATCTAACTTGTTTTGG+AGG | - | chr5_1:59552653-59552672 | None:intergenic | 30.0% |
| CAAACTGATACCAATCATTT+GGG | - | chr5_1:59553119-59553138 | None:intergenic | 30.0% | |
| ! | TGGTTATATTTTCATGAGTG+TGG | + | chr5_1:59553188-59553207 | Msa0740550:intron | 30.0% |
| ! | GGTTATATTTTCATGAGTGT+GGG | + | chr5_1:59553189-59553208 | Msa0740550:intron | 30.0% |
| ! | TGGCTTATTTACTTGAGTTT+TGG | + | chr5_1:59553492-59553511 | Msa0740550:intron | 30.0% |
| ATTTCATCACATTAATGCTC+TGG | - | chr5_1:59553553-59553572 | None:intergenic | 30.0% | |
| !!! | TTTGGAGGGTTTAGTTTTAT+TGG | + | chr5_1:59553771-59553790 | Msa0740550:intron | 30.0% |
| !!! | TTGGAGGGTTTAGTTTTATT+GGG | + | chr5_1:59553772-59553791 | Msa0740550:intron | 30.0% |
| CAAACAATCAAAAGCAATCA+TGG | - | chr5_1:59554097-59554116 | None:intergenic | 30.0% | |
| !!! | TTGATGTTCTTGTTTTTTGC+AGG | + | chr5_1:59554177-59554196 | Msa0740550:intron | 30.0% |
| !!! | TGCTTTTTCTTCCGATTCAA+TGG | + | chr5_1:59550121-59550140 | Msa0740550:CDS | 35.0% |
| ACTTGATTAGATAGGGAATG+AGG | + | chr5_1:59550773-59550792 | Msa0740550:intron | 35.0% | |
| CTTGATTAGATAGGGAATGA+GGG | + | chr5_1:59550774-59550793 | Msa0740550:intron | 35.0% | |
| TTGATTAGATAGGGAATGAG+GGG | + | chr5_1:59550775-59550794 | Msa0740550:intron | 35.0% | |
| AATGCAAGGAATCACGAAAA+TGG | - | chr5_1:59550913-59550932 | None:intergenic | 35.0% | |
| AAAAGCAGTCGTTACTGATA+AGG | + | chr5_1:59551033-59551052 | Msa0740550:intron | 35.0% | |
| ! | GGTCAACGATTTCTTGTTTA+TGG | - | chr5_1:59551072-59551091 | None:intergenic | 35.0% |
| ACAAGAAATCGTTGACCATT+TGG | + | chr5_1:59551075-59551094 | Msa0740550:intron | 35.0% | |
| AATTCCATCTGAGTTTGAGT+TGG | + | chr5_1:59551212-59551231 | Msa0740550:intron | 35.0% | |
| GCAATTCCTGATTTCCAAAA+TGG | - | chr5_1:59551392-59551411 | None:intergenic | 35.0% | |
| ATCCAGAAGCTTGAATTGAA+TGG | - | chr5_1:59551539-59551558 | None:intergenic | 35.0% | |
| ACTGTTTGCAGTTCAATGTT+TGG | + | chr5_1:59551561-59551580 | Msa0740550:intron | 35.0% | |
| CATCATGAATCATGATGCAT+CGG | - | chr5_1:59551847-59551866 | None:intergenic | 35.0% | |
| ATATAAAGTGTACACAGGTC+AGG | - | chr5_1:59551997-59552016 | None:intergenic | 35.0% | |
| CTCATTGTCATCTTTATTCC+TGG | + | chr5_1:59552040-59552059 | Msa0740550:intron | 35.0% | |
| !! | CCGAGAGAAAATGTTTTGTT+TGG | + | chr5_1:59552107-59552126 | Msa0740550:intron | 35.0% |
| TGACTGTTTATCTTCCATTG+TGG | + | chr5_1:59552451-59552470 | Msa0740550:intron | 35.0% | |
| CGGATCTTGCATAGTTAAAA+TGG | - | chr5_1:59552690-59552709 | None:intergenic | 35.0% | |
| !! | GAAAAGAAGAGATTTTTGGG+TGG | - | chr5_1:59552752-59552771 | None:intergenic | 35.0% |
| TTTCTGTAGCTAAGTTTCCT+GGG | + | chr5_1:59552877-59552896 | Msa0740550:intron | 35.0% | |
| ATGTAAACAGCTAAGTGGAA+GGG | - | chr5_1:59553073-59553092 | None:intergenic | 35.0% | |
| TATGTAAACAGCTAAGTGGA+AGG | - | chr5_1:59553074-59553093 | None:intergenic | 35.0% | |
| TCAGTATGTAAACAGCTAAG+TGG | - | chr5_1:59553078-59553097 | None:intergenic | 35.0% | |
| GCAAACTGATACCAATCATT+TGG | - | chr5_1:59553120-59553139 | None:intergenic | 35.0% | |
| TTAACAAGAACACCTAGCTA+TGG | - | chr5_1:59553144-59553163 | None:intergenic | 35.0% | |
| TGTAGTCTAATGAAGCTTCA+TGG | + | chr5_1:59553168-59553187 | Msa0740550:intron | 35.0% | |
| CATGAGTGTGGGAAAAAATT+AGG | + | chr5_1:59553200-59553219 | Msa0740550:intron | 35.0% | |
| GATCTATCAGTCGCAAAAAT+AGG | - | chr5_1:59553233-59553252 | None:intergenic | 35.0% | |
| TATGTCATATGTGGAGATCA+AGG | + | chr5_1:59553426-59553445 | Msa0740550:intron | 35.0% | |
| TCAAGGATGAATATAGACTG+AGG | + | chr5_1:59553443-59553462 | Msa0740550:intron | 35.0% | |
| GCAGAAAATCTCGTGAAATT+TGG | - | chr5_1:59553522-59553541 | None:intergenic | 35.0% | |
| AAGGAGCAAATGGAAAGAAT+AGG | + | chr5_1:59553728-59553747 | Msa0740550:intron | 35.0% | |
| AGGAGCAAATGGAAAGAATA+GGG | + | chr5_1:59553729-59553748 | Msa0740550:intron | 35.0% | |
| ! | ATGGAAAGAATAGGGACTTT+TGG | + | chr5_1:59553737-59553756 | Msa0740550:intron | 35.0% |
| ! | TGGAAAGAATAGGGACTTTT+GGG | + | chr5_1:59553738-59553757 | Msa0740550:intron | 35.0% |
| !!! | TGGAGGGTTTAGTTTTATTG+GGG | + | chr5_1:59553773-59553792 | Msa0740550:intron | 35.0% |
| TTTGGAGGGTGGAAAATATA+AGG | - | chr5_1:59553965-59553984 | None:intergenic | 35.0% | |
| !! | TCTTCTCCTAAGCTTTGTTT+GGG | - | chr5_1:59554010-59554029 | None:intergenic | 35.0% |
| !! | TTCTTCTCCTAAGCTTTGTT+TGG | - | chr5_1:59554011-59554030 | None:intergenic | 35.0% |
| TTGACCATAACTAGATTCTG+GGG | - | chr5_1:59554254-59554273 | None:intergenic | 35.0% | |
| CTTGACCATAACTAGATTCT+GGG | - | chr5_1:59554255-59554274 | None:intergenic | 35.0% | |
| TGATTTAGCACAACATGTTG+AGG | - | chr5_1:59554385-59554404 | None:intergenic | 35.0% | |
| TCAAAATCTGTTGTTGCCAT+GGG | + | chr5_1:59554430-59554449 | Msa0740550:CDS | 35.0% | |
| ! | GAAGAAAAAGCACGAATAGG+AGG | - | chr5_1:59550113-59550132 | None:intergenic | 40.0% |
| ! | TCGGAAGAAAAAGCACGAAT+AGG | - | chr5_1:59550116-59550135 | None:intergenic | 40.0% |
| ACACCCTACGTTAGTAAGTT+TGG | - | chr5_1:59550982-59551001 | None:intergenic | 40.0% | |
| CAAGTTAAACAGGCTCCAAA+TGG | - | chr5_1:59551093-59551112 | None:intergenic | 40.0% | |
| GACGCTTAGTCAGAACTTTA+CGG | + | chr5_1:59551172-59551191 | Msa0740550:intron | 40.0% | |
| TGCCATTCAATTCAAGCTTC+TGG | + | chr5_1:59551534-59551553 | Msa0740550:intron | 40.0% | |
| GCAGTTCAATGTTTGGACTT+CGG | + | chr5_1:59551568-59551587 | Msa0740550:intron | 40.0% | |
| TTCTCAATTCAGAGACTTCG+AGG | - | chr5_1:59551748-59551767 | None:intergenic | 40.0% | |
| CAAAATTGCTAGGCCAACAT+TGG | - | chr5_1:59551814-59551833 | None:intergenic | 40.0% | |
| !! | CAATGTTGGCCTAGCAATTT+TGG | + | chr5_1:59551812-59551831 | Msa0740550:intron | 40.0% |
| AGGGCCAAATACAAAGTTGT+TGG | - | chr5_1:59552555-59552574 | None:intergenic | 40.0% | |
| CTATGCAAGATCCGAAACAT+CGG | + | chr5_1:59552696-59552715 | Msa0740550:intron | 40.0% | |
| ACTAAGATCTGCCGATGTTT+CGG | - | chr5_1:59552710-59552729 | None:intergenic | 40.0% | |
| !!! | GGCAGATCTTAGTTTTGATG+AGG | + | chr5_1:59552717-59552736 | Msa0740550:intron | 40.0% |
| !!! | TAGTTTTGATGAGGATGCCA+TGG | + | chr5_1:59552726-59552745 | Msa0740550:intron | 40.0% |
| GTTTCTGTAGCTAAGTTTCC+TGG | + | chr5_1:59552876-59552895 | Msa0740550:intron | 40.0% | |
| TGGCTAAAATATTGTACGCG+AGG | + | chr5_1:59552935-59552954 | Msa0740550:intron | 40.0% | |
| TGTAAACAGCTAAGTGGAAG+GGG | - | chr5_1:59553072-59553091 | None:intergenic | 40.0% | |
| TGCTACTGATCCCAAATGAT+TGG | + | chr5_1:59553106-59553125 | Msa0740550:intron | 40.0% | |
| TATCAGTTTGCACCATAGCT+AGG | + | chr5_1:59553129-59553148 | Msa0740550:intron | 40.0% | |
| ! | CACGAGATTTTCTGCTTTCA+TGG | + | chr5_1:59553527-59553546 | Msa0740550:intron | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr5_1:59553672-59553691 | Msa0740550:intron | 40.0% |
| ! | CTTTGTTTGCGAGTTTGGAT+GGG | + | chr5_1:59553677-59553696 | Msa0740550:intron | 40.0% |
| GGAAAAAAGGAAGGAGCAAA+TGG | + | chr5_1:59553718-59553737 | Msa0740550:intron | 40.0% | |
| ! | AAAGAATAGGGACTTTTGGG+AGG | + | chr5_1:59553741-59553760 | Msa0740550:intron | 40.0% |
| !! | AAGAATAGGGACTTTTGGGA+GGG | + | chr5_1:59553742-59553761 | Msa0740550:intron | 40.0% |
| !!! | GGAGGGTTTAGTTTTATTGG+GGG | + | chr5_1:59553774-59553793 | Msa0740550:intron | 40.0% |
| TTTATTGGGGGAACTCGTAT+TGG | + | chr5_1:59553786-59553805 | Msa0740550:intron | 40.0% | |
| !! | CTAAGCTTTGTTTGGGAGTT+TGG | - | chr5_1:59554003-59554022 | None:intergenic | 40.0% |
| CAAACTCCCAAACAAAGCTT+AGG | + | chr5_1:59554001-59554020 | Msa0740550:intron | 40.0% | |
| TTTCCTGTCCTATATAGTCC+AGG | + | chr5_1:59554064-59554083 | Msa0740550:intron | 40.0% | |
| GCTTGACCATAACTAGATTC+TGG | - | chr5_1:59554256-59554275 | None:intergenic | 40.0% | |
| AGACTTTGCAAAAGAGCCAA+TGG | + | chr5_1:59554291-59554310 | Msa0740550:CDS | 40.0% | |
| !! | ACATGTTGAGGCTTTGAAGA+GGG | - | chr5_1:59554373-59554392 | None:intergenic | 40.0% |
| !! | AACATGTTGAGGCTTTGAAG+AGG | - | chr5_1:59554374-59554393 | None:intergenic | 40.0% |
| ! | CATGGCAACAACAGATTTTG+AGG | - | chr5_1:59554431-59554450 | None:intergenic | 40.0% |
| CTCAAAATCTGTTGTTGCCA+TGG | + | chr5_1:59554429-59554448 | Msa0740550:CDS | 40.0% | |
| CAACTGTCACATATTTCGAC+TGG | - | chr5_1:59554471-59554490 | None:intergenic | 40.0% | |
| TCCTTTACAAACCTCTCAAG+AGG | + | chr5_1:59554491-59554510 | Msa0740550:CDS | 40.0% | |
| ACCTCTTGAGAGGTTTGTAA+AGG | - | chr5_1:59554495-59554514 | None:intergenic | 40.0% | |
| AACGCTAACGGAAGAGAAGA+CGG | + | chr5_1:59550038-59550057 | Msa0740550:CDS | 45.0% | |
| ! | GAAAAAGCACGAATAGGAGG+TGG | - | chr5_1:59550110-59550129 | None:intergenic | 45.0% |
| CGGACTATTGGCCATTGAAT+CGG | - | chr5_1:59550135-59550154 | None:intergenic | 45.0% | |
| AGAAAGAGAAAGCGAACCTG+AGG | - | chr5_1:59550200-59550219 | None:intergenic | 45.0% | |
| ! | CGTAGGGTGTTTGTTTATGC+TGG | + | chr5_1:59550992-59551011 | Msa0740550:intron | 45.0% |
| AATGGGCACCATATGGTCAA+CGG | - | chr5_1:59551135-59551154 | None:intergenic | 45.0% | |
| CAAGTTCAATGGGCACCATA+TGG | - | chr5_1:59551142-59551161 | None:intergenic | 45.0% | |
| TGGTCCAACTCAAACTCAGA+TGG | - | chr5_1:59551219-59551238 | None:intergenic | 45.0% | |
| ! | TTTGTTGTGACGTGTTCCCT+TGG | + | chr5_1:59551707-59551726 | Msa0740550:intron | 45.0% |
| GACAGTAAGCTAGTAGCCAA+GGG | - | chr5_1:59551726-59551745 | None:intergenic | 45.0% | |
| ACTGAACTGTCTGCCAATGT+TGG | + | chr5_1:59551798-59551817 | Msa0740550:intron | 45.0% | |
| CAACTCTACATGAGATTCCC+AGG | - | chr5_1:59552152-59552171 | None:intergenic | 45.0% | |
| TATGCATTAGCAGCAGACCA+AGG | - | chr5_1:59552359-59552378 | None:intergenic | 45.0% | |
| !!! | AAGAGATTTTTGGGTGGCCA+TGG | - | chr5_1:59552746-59552765 | None:intergenic | 45.0% |
| !! | CAGCGCTGGCATACATAATT+TGG | - | chr5_1:59552844-59552863 | None:intergenic | 45.0% |
| AATTATGTATGCCAGCGCTG+TGG | + | chr5_1:59552844-59552863 | Msa0740550:intron | 45.0% | |
| AAGTTTCCTGGGATCGAATC+TGG | + | chr5_1:59552888-59552907 | Msa0740550:intron | 45.0% | |
| GTAACTAGATGTGAGGGGTA+AGG | + | chr5_1:59553385-59553404 | Msa0740550:intron | 45.0% | |
| TGGATTCTGCACTCTACTGT+TGG | + | chr5_1:59553472-59553491 | Msa0740550:intron | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+TGG | + | chr5_1:59553676-59553695 | Msa0740550:intron | 45.0% |
| TTTGCGAGTTTGGATGGGAA+GGG | + | chr5_1:59553682-59553701 | Msa0740550:intron | 45.0% | |
| AGGAGAGGACTTCGGAAAAA+AGG | + | chr5_1:59553705-59553724 | Msa0740550:intron | 45.0% | |
| GAGGACTTCGGAAAAAAGGA+AGG | + | chr5_1:59553709-59553728 | Msa0740550:intron | 45.0% | |
| !! | AGAATAGGGACTTTTGGGAG+GGG | + | chr5_1:59553743-59553762 | Msa0740550:intron | 45.0% |
| ! | GGAACTCGTATTGGAGGTTT+TGG | + | chr5_1:59553795-59553814 | Msa0740550:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr5_1:59553998-59554017 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr5_1:59553999-59554018 | None:intergenic | 45.0% |
| !! | AGCTTTGTTTGGGAGTTTGG+AGG | - | chr5_1:59554000-59554019 | None:intergenic | 45.0% |
| CAAACTCAGACACACTCTCA+GGG | - | chr5_1:59554219-59554238 | None:intergenic | 45.0% | |
| TCAAACTCAGACACACTCTC+AGG | - | chr5_1:59554220-59554239 | None:intergenic | 45.0% | |
| ! | TGAGAGTGTGTCTGAGTTTG+AGG | + | chr5_1:59554219-59554238 | Msa0740550:CDS | 45.0% |
| ! | CCATAACTAGATTCTGGGGA+GGG | - | chr5_1:59554250-59554269 | None:intergenic | 45.0% |
| ! | ACCATAACTAGATTCTGGGG+AGG | - | chr5_1:59554251-59554270 | None:intergenic | 45.0% |
| TTTGCAAAGTCTTCCTCAGC+TGG | - | chr5_1:59554283-59554302 | None:intergenic | 45.0% | |
| !! | AGGACTTTGAGGCGGACTAT+TGG | - | chr5_1:59550147-59550166 | None:intergenic | 50.0% |
| CTAGAACGACGAGGACTTTG+AGG | - | chr5_1:59550158-59550177 | None:intergenic | 50.0% | |
| TCTAGATCGCCGATCCTCTT+CGG | + | chr5_1:59550173-59550192 | Msa0740550:CDS | 50.0% | |
| GGGAATGAGGGGTAAAGAAG+TGG | + | chr5_1:59550786-59550805 | Msa0740550:intron | 50.0% | |
| GCAAGAAGCCGTTGACCATA+TGG | + | chr5_1:59551124-59551143 | Msa0740550:intron | 50.0% | |
| CCATCCACAACGTGAAGACA+TGG | - | chr5_1:59551272-59551291 | None:intergenic | 50.0% | |
| CCATGTCTTCACGTTGTGGA+TGG | + | chr5_1:59551269-59551288 | Msa0740550:intron | 50.0% | |
| GGACAGTAAGCTAGTAGCCA+AGG | - | chr5_1:59551727-59551746 | None:intergenic | 50.0% | |
| ATGAGATTCCCAGGAGAGTG+GGG | - | chr5_1:59552143-59552162 | None:intergenic | 50.0% | |
| CATGAGATTCCCAGGAGAGT+GGG | - | chr5_1:59552144-59552163 | None:intergenic | 50.0% | |
| ACATGAGATTCCCAGGAGAG+TGG | - | chr5_1:59552145-59552164 | None:intergenic | 50.0% | |
| TTTCTGCCAGATTCGATCCC+AGG | - | chr5_1:59552897-59552916 | None:intergenic | 50.0% | |
| !! | GAACTAGTTGGCTCGTGTAG+TGG | - | chr5_1:59553003-59553022 | None:intergenic | 50.0% |
| GTTTGCGAGTTTGGATGGGA+AGG | + | chr5_1:59553681-59553700 | Msa0740550:intron | 50.0% | |
| ATTGGGGGAACTCGTATTGG+AGG | + | chr5_1:59553789-59553808 | Msa0740550:intron | 50.0% | |
| TCGCCTGGACTATATAGGAC+AGG | - | chr5_1:59554070-59554089 | None:intergenic | 50.0% | |
| GACACTCGCCTGGACTATAT+AGG | - | chr5_1:59554075-59554094 | None:intergenic | 50.0% | |
| ! | GACACACTCTCAGGGTTTTC+TGG | - | chr5_1:59554211-59554230 | None:intergenic | 50.0% |
| ! | TAACTAGATTCTGGGGAGGG+TGG | - | chr5_1:59554247-59554266 | None:intergenic | 50.0% |
| CCCTCCCCAGAATCTAGTTA+TGG | + | chr5_1:59554247-59554266 | Msa0740550:CDS | 50.0% | |
| TGGTCAAGCATATCCAGCTG+AGG | + | chr5_1:59554267-59554286 | Msa0740550:CDS | 50.0% | |
| ACTGTAAGATGCAGCTGCGA+AGG | - | chr5_1:59554322-59554341 | None:intergenic | 50.0% | |
| CAGCTGCATCTTACAGTCCT+AGG | + | chr5_1:59554325-59554344 | Msa0740550:CDS | 50.0% | |
| GCATCTTACAGTCCTAGGCA+TGG | + | chr5_1:59554330-59554349 | Msa0740550:CDS | 50.0% | |
| ! | GAACGACGAGGACTTTGAGG+CGG | - | chr5_1:59550155-59550174 | None:intergenic | 55.0% |
| ! | ATCGGCGATCTAGAACGACG+AGG | - | chr5_1:59550167-59550186 | None:intergenic | 55.0% |
| ACCTGAGGACCGAAGAGGAT+CGG | - | chr5_1:59550185-59550204 | None:intergenic | 55.0% | |
| ! | TTGGCTCGCTCATGACTGCA+TGG | + | chr5_1:59550515-59550534 | Msa0740550:intron | 55.0% |
| GGAGCCATGTCTTCACGTTG+TGG | + | chr5_1:59551265-59551284 | Msa0740550:intron | 55.0% | |
| TGAGATTCCCAGGAGAGTGG+GGG | - | chr5_1:59552142-59552161 | None:intergenic | 55.0% | |
| TATGTATGCCAGCGCTGTGG+TGG | + | chr5_1:59552847-59552866 | Msa0740550:intron | 55.0% | |
| TTTGGATGGGAAGGGAGGAG+AGG | + | chr5_1:59553690-59553709 | Msa0740550:intron | 55.0% | |
| !! | ATAGGGACTTTTGGGAGGGG+AGG | + | chr5_1:59553746-59553765 | Msa0740550:intron | 55.0% |
| !! | TAGGGACTTTTGGGAGGGGA+GGG | + | chr5_1:59553747-59553766 | Msa0740550:intron | 55.0% |
| TTTGGGAGTTTGGAGGGGAG+AGG | - | chr5_1:59553993-59554012 | None:intergenic | 55.0% | |
| AGCAATCATGGACACTCGCC+TGG | - | chr5_1:59554085-59554104 | None:intergenic | 55.0% | |
| AGCTGCGAAGGAACAGCCAT+TGG | - | chr5_1:59554310-59554329 | None:intergenic | 55.0% | |
| CATCAGCGTTCTCCATGCCT+AGG | - | chr5_1:59554345-59554364 | None:intergenic | 55.0% | |
| GGCATGGAGAACGCTGATGT+CGG | + | chr5_1:59554346-59554365 | Msa0740550:CDS | 55.0% | |
| TTGCCATGGGAGTGACTCAC+AGG | + | chr5_1:59554443-59554462 | Msa0740550:CDS | 55.0% | |
| GAACCTGTGAGTCACTCCCA+TGG | - | chr5_1:59554449-59554468 | None:intergenic | 55.0% | |
| TTCACGACCGGAAGGATCGC+CGG | - | chr5_1:59550078-59550097 | None:intergenic | 60.0% | |
| AGCGAACCTGAGGACCGAAG+AGG | - | chr5_1:59550190-59550209 | None:intergenic | 60.0% | |
| AGTTATCCCCCCCACTCTCC+TGG | + | chr5_1:59552131-59552150 | Msa0740550:intron | 60.0% | |
| GTTATCCCCCCCACTCTCCT+GGG | + | chr5_1:59552132-59552151 | Msa0740550:intron | 60.0% | |
| AGATTCCCAGGAGAGTGGGG+GGG | - | chr5_1:59552140-59552159 | None:intergenic | 60.0% | |
| GAGATTCCCAGGAGAGTGGG+GGG | - | chr5_1:59552141-59552160 | None:intergenic | 60.0% | |
| GCGAGTTTGGATGGGAAGGG+AGG | + | chr5_1:59553685-59553704 | Msa0740550:intron | 60.0% | |
| GGGAAGGGAGGAGAGGACTT+CGG | + | chr5_1:59553697-59553716 | Msa0740550:intron | 60.0% | |
| !! | CTTTTGGGAGGGGAGGGCTT+TGG | + | chr5_1:59553753-59553772 | Msa0740550:intron | 60.0% |
| GAGAGGAGGGATTTGGAGGG+TGG | - | chr5_1:59553976-59553995 | None:intergenic | 60.0% | |
| GGGGAGAGGAGGGATTTGGA+GGG | - | chr5_1:59553979-59553998 | None:intergenic | 60.0% | |
| AGGGGAGAGGAGGGATTTGG+AGG | - | chr5_1:59553980-59553999 | None:intergenic | 60.0% | |
| TGGAGGGGAGAGGAGGGATT+TGG | - | chr5_1:59553983-59554002 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGAGGA+GGG | - | chr5_1:59553989-59554008 | None:intergenic | 60.0% | |
| GACGGAGCTATTCCCGACGC+CGG | + | chr5_1:59550056-59550075 | Msa0740550:CDS | 65.0% | |
| GCGTGAGGTTCACGACCGGA+AGG | - | chr5_1:59550086-59550105 | None:intergenic | 65.0% | |
| TGGCGCGTGAGGTTCACGAC+CGG | - | chr5_1:59550090-59550109 | None:intergenic | 65.0% | |
| CGAATAGGAGGTGGCGCGTG+AGG | - | chr5_1:59550101-59550120 | None:intergenic | 65.0% | |
| GCCGATCCTCTTCGGTCCTC+AGG | + | chr5_1:59550181-59550200 | Msa0740550:CDS | 65.0% | |
| ACGCTCTTCCACCACAGCGC+TGG | - | chr5_1:59552858-59552877 | None:intergenic | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+AGG | + | chr5_1:59553756-59553775 | Msa0740550:intron | 65.0% |
| !! | TGGGAGGGGAGGGCTTTGGA+GGG | + | chr5_1:59553757-59553776 | Msa0740550:intron | 65.0% |
| GGGAGTTTGGAGGGGAGAGG+AGG | - | chr5_1:59553990-59554009 | None:intergenic | 65.0% | |
| ACCGGAAGGATCGCCGGCGT+CGG | - | chr5_1:59550072-59550091 | None:intergenic | 70.0% | |
| CCGGAAGGATCGCCGGCGTC+GGG | - | chr5_1:59550071-59550090 | None:intergenic | 75.0% | |
| CCCGACGCCGGCGATCCTTC+CGG | + | chr5_1:59550068-59550087 | Msa0740550:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59550032 | 59554516 | 59550032 | ID=Msa0740550;Name=Msa0740550 |
| chr5_1 | mRNA | 59550032 | 59554516 | 59550032 | ID=Msa0740550-mRNA-1;Parent=Msa0740550;Name=Msa0740550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|162 |
| chr5_1 | exon | 59550032 | 59550202 | 59550032 | ID=Msa0740550-mRNA-1:exon:17143;Parent=Msa0740550-mRNA-1 |
| chr5_1 | exon | 59554199 | 59554516 | 59554199 | ID=Msa0740550-mRNA-1:exon:17144;Parent=Msa0740550-mRNA-1 |
| chr5_1 | CDS | 59550032 | 59550202 | 59550032 | ID=Msa0740550-mRNA-1:cds;Parent=Msa0740550-mRNA-1 |
| chr5_1 | CDS | 59554199 | 59554516 | 59554199 | ID=Msa0740550-mRNA-1:cds;Parent=Msa0740550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
