Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746240 | XP_003618745.1 | 68.267 | 375 | 106 | 5 | 1 | 369 | 1 | 368 | 3.17e-161 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746240 | sp|Q3EBZ2|SKI23_ARATH | 30.326 | 399 | 229 | 13 | 4 | 366 | 2 | 387 | 3.74e-40 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746240 | G7KMS3 | 68.267 | 375 | 106 | 5 | 1 | 369 | 1 | 368 | 1.52e-161 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746230 | Msa0746240 | 0.806651 | 7.415666e-50 | -8.615850e-47 |
| Msa0746240 | Msa0978660 | 0.813825 | 2.103820e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746240 | MtrunA17_Chr6g0457541 | 68.267 | 375 | 106 | 5 | 1 | 369 | 1 | 368 | 2.92e-165 | 466 |
| Msa0746240 | MtrunA17_Chr6g0460451 | 63.517 | 381 | 114 | 9 | 1 | 365 | 1 | 372 | 7.48e-150 | 428 |
| Msa0746240 | MtrunA17_Chr6g0460421 | 63.517 | 381 | 114 | 9 | 1 | 365 | 1 | 372 | 1.01e-149 | 427 |
| Msa0746240 | MtrunA17_Chr6g0457531 | 63.271 | 373 | 125 | 4 | 1 | 369 | 1 | 365 | 5.66e-148 | 422 |
| Msa0746240 | MtrunA17_Chr6g0457501 | 58.355 | 389 | 133 | 8 | 1 | 369 | 1 | 380 | 4.75e-140 | 404 |
| Msa0746240 | MtrunA17_Chr3g0088751 | 51.842 | 380 | 165 | 9 | 1 | 369 | 1 | 373 | 7.60e-118 | 346 |
| Msa0746240 | MtrunA17_Chr2g0303111 | 50.649 | 385 | 151 | 10 | 3 | 369 | 4 | 367 | 1.41e-112 | 333 |
| Msa0746240 | MtrunA17_Chr3g0088841 | 50.794 | 378 | 166 | 11 | 2 | 369 | 4 | 371 | 1.81e-112 | 332 |
| Msa0746240 | MtrunA17_Chr3g0088551 | 47.475 | 396 | 171 | 10 | 1 | 364 | 1 | 391 | 8.05e-106 | 316 |
| Msa0746240 | MtrunA17_Chr1g0146401 | 48.320 | 387 | 166 | 12 | 1 | 369 | 18 | 388 | 9.98e-106 | 316 |
| Msa0746240 | MtrunA17_Chr1g0157711 | 48.556 | 381 | 155 | 11 | 4 | 367 | 5 | 361 | 1.30e-101 | 304 |
| Msa0746240 | MtrunA17_Chr3g0088721 | 47.301 | 389 | 174 | 13 | 1 | 369 | 1 | 378 | 1.45e-99 | 300 |
| Msa0746240 | MtrunA17_Chr3g0088951 | 46.684 | 377 | 172 | 11 | 1 | 369 | 1 | 356 | 9.00e-93 | 281 |
| Msa0746240 | MtrunA17_Chr3g0088671 | 48.802 | 334 | 155 | 7 | 1 | 329 | 1 | 323 | 7.31e-92 | 279 |
| Msa0746240 | MtrunA17_Chr3g0088541 | 45.383 | 379 | 178 | 12 | 3 | 369 | 2 | 363 | 1.91e-91 | 278 |
| Msa0746240 | MtrunA17_Chr3g0088931 | 48.980 | 343 | 152 | 11 | 1 | 331 | 1 | 332 | 4.84e-91 | 278 |
| Msa0746240 | MtrunA17_Chr3g0089001 | 46.361 | 371 | 170 | 10 | 1 | 364 | 31 | 379 | 2.94e-90 | 276 |
| Msa0746240 | MtrunA17_Chr3g0088621 | 45.128 | 390 | 172 | 12 | 2 | 364 | 13 | 387 | 8.70e-90 | 275 |
| Msa0746240 | MtrunA17_Chr3g0127321 | 43.826 | 413 | 165 | 11 | 4 | 369 | 34 | 426 | 9.24e-87 | 269 |
| Msa0746240 | MtrunA17_Chr3g0088741 | 47.463 | 335 | 156 | 9 | 1 | 328 | 1 | 322 | 8.01e-86 | 264 |
| Msa0746240 | MtrunA17_Chr3g0088601 | 43.750 | 384 | 193 | 10 | 1 | 364 | 13 | 393 | 5.62e-85 | 263 |
| Msa0746240 | MtrunA17_Chr3g0088531 | 43.045 | 381 | 192 | 12 | 4 | 369 | 2 | 372 | 2.15e-84 | 261 |
| Msa0746240 | MtrunA17_Chr1g0151721 | 43.603 | 383 | 150 | 11 | 1 | 369 | 17 | 347 | 3.52e-84 | 259 |
| Msa0746240 | MtrunA17_Chr3g0088921 | 43.000 | 400 | 178 | 15 | 2 | 364 | 3 | 389 | 7.92e-84 | 260 |
| Msa0746240 | MtrunA17_Chr3g0127311 | 44.250 | 400 | 175 | 13 | 1 | 369 | 3 | 385 | 9.35e-83 | 258 |
| Msa0746240 | MtrunA17_Chr3g0088631 | 42.674 | 389 | 190 | 11 | 1 | 364 | 1 | 381 | 1.72e-82 | 256 |
| Msa0746240 | MtrunA17_Chr3g0089051 | 42.188 | 384 | 188 | 12 | 2 | 363 | 55 | 426 | 1.82e-82 | 258 |
| Msa0746240 | MtrunA17_Chr1g0170781 | 41.975 | 405 | 172 | 13 | 3 | 369 | 17 | 396 | 9.09e-82 | 255 |
| Msa0746240 | MtrunA17_Chr3g0088641 | 40.420 | 381 | 186 | 10 | 3 | 369 | 2 | 355 | 4.21e-77 | 241 |
| Msa0746240 | MtrunA17_Chr3g0089041 | 43.782 | 386 | 181 | 16 | 4 | 369 | 3 | 372 | 7.12e-77 | 241 |
| Msa0746240 | MtrunA17_Chr3g0088991 | 41.734 | 369 | 173 | 11 | 2 | 364 | 3 | 335 | 1.99e-69 | 221 |
| Msa0746240 | MtrunA17_Chr3g0088831 | 36.516 | 419 | 204 | 10 | 2 | 369 | 13 | 420 | 2.58e-68 | 221 |
| Msa0746240 | MtrunA17_Chr7g0214521 | 40.310 | 387 | 176 | 15 | 4 | 369 | 11 | 363 | 5.31e-66 | 213 |
| Msa0746240 | MtrunA17_Chr3g0088661 | 42.895 | 380 | 140 | 15 | 5 | 369 | 9 | 326 | 1.04e-64 | 209 |
| Msa0746240 | MtrunA17_Chr3g0088701 | 42.784 | 388 | 141 | 16 | 1 | 369 | 1 | 326 | 1.62e-63 | 206 |
| Msa0746240 | MtrunA17_Chr5g0417881 | 59.551 | 178 | 59 | 4 | 194 | 359 | 13 | 189 | 1.72e-58 | 188 |
| Msa0746240 | MtrunA17_Chr3g0096401 | 39.474 | 380 | 165 | 14 | 5 | 369 | 30 | 359 | 3.78e-58 | 193 |
| Msa0746240 | MtrunA17_Chr3g0088561 | 57.558 | 172 | 63 | 2 | 208 | 369 | 1 | 172 | 1.16e-55 | 180 |
| Msa0746240 | MtrunA17_Chr1g0146371 | 54.082 | 196 | 48 | 5 | 178 | 362 | 3 | 167 | 9.24e-54 | 175 |
| Msa0746240 | MtrunA17_Chr6g0457511 | 71.930 | 114 | 20 | 1 | 208 | 309 | 1 | 114 | 8.08e-46 | 152 |
| Msa0746240 | MtrunA17_Chr1g0151701 | 53.757 | 173 | 64 | 5 | 208 | 364 | 1 | 173 | 2.55e-45 | 154 |
| Msa0746240 | MtrunA17_Chr3g0088581 | 45.192 | 208 | 88 | 6 | 175 | 364 | 2 | 201 | 3.37e-43 | 149 |
| Msa0746240 | MtrunA17_Chr8g0392121 | 48.901 | 182 | 67 | 5 | 205 | 369 | 1 | 173 | 2.87e-42 | 145 |
| Msa0746240 | MtrunA17_Chr3g0088711 | 53.237 | 139 | 64 | 1 | 188 | 326 | 8 | 145 | 1.26e-38 | 136 |
| Msa0746240 | MtrunA17_Chr3g0088571 | 52.632 | 152 | 61 | 6 | 1 | 147 | 1 | 146 | 3.19e-38 | 134 |
| Msa0746240 | MtrunA17_Chr3g0088681 | 51.034 | 145 | 65 | 2 | 208 | 352 | 1 | 139 | 3.75e-38 | 134 |
| Msa0746240 | MtrunA17_Chr3g0092331 | 41.573 | 178 | 80 | 3 | 214 | 369 | 5 | 180 | 8.04e-36 | 129 |
| Msa0746240 | MtrunA17_Chr3g0088691 | 41.414 | 198 | 97 | 6 | 1 | 195 | 1 | 182 | 2.26e-35 | 127 |
| Msa0746240 | MtrunA17_Chr3g0088591 | 46.104 | 154 | 72 | 4 | 2 | 146 | 18 | 169 | 1.08e-31 | 117 |
| Msa0746240 | MtrunA17_Chr3g0088651 | 49.315 | 146 | 63 | 5 | 1 | 144 | 1 | 137 | 1.33e-30 | 115 |
| Msa0746240 | MtrunA17_Chr6g0457521 | 67.442 | 86 | 27 | 1 | 4 | 89 | 57 | 141 | 3.63e-30 | 114 |
| Msa0746240 | MtrunA17_Chr8g0349911 | 70.769 | 65 | 19 | 0 | 164 | 228 | 85 | 149 | 1.18e-25 | 102 |
| Msa0746240 | MtrunA17_Chr2g0300541 | 26.429 | 420 | 200 | 15 | 4 | 367 | 25 | 391 | 2.88e-24 | 102 |
| Msa0746240 | MtrunA17_Chr3g0101901 | 42.568 | 148 | 66 | 5 | 1 | 147 | 22 | 151 | 6.66e-24 | 96.7 |
| Msa0746240 | MtrunA17_Chr8g0371101 | 29.805 | 359 | 193 | 15 | 4 | 325 | 5 | 341 | 6.10e-23 | 99.0 |
| Msa0746240 | MtrunA17_Chr8g0371031 | 27.473 | 364 | 196 | 14 | 4 | 325 | 24 | 361 | 3.20e-22 | 97.1 |
| Msa0746240 | MtrunA17_Chr8g0351561 | 53.191 | 94 | 32 | 3 | 217 | 300 | 1 | 92 | 1.63e-20 | 87.0 |
| Msa0746240 | MtrunA17_Chr6g0457551 | 84.783 | 46 | 7 | 0 | 1 | 46 | 1 | 46 | 6.47e-20 | 82.0 |
| Msa0746240 | MtrunA17_Chr6g0449121 | 60.811 | 74 | 15 | 2 | 253 | 317 | 1 | 69 | 7.39e-19 | 80.1 |
| Msa0746240 | MtrunA17_Chr1g0146381 | 65.517 | 58 | 19 | 1 | 4 | 60 | 7 | 64 | 1.95e-17 | 76.6 |
| Msa0746240 | MtrunA17_Chr4g0010441 | 47.059 | 85 | 44 | 1 | 285 | 369 | 2 | 85 | 8.15e-17 | 75.1 |
| Msa0746240 | MtrunA17_Chr1g0146361 | 52.326 | 86 | 33 | 2 | 286 | 369 | 2 | 81 | 6.20e-16 | 72.4 |
| Msa0746240 | MtrunA17_Chr6g0488491 | 24.771 | 327 | 203 | 10 | 3 | 312 | 6 | 306 | 1.62e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746240 | AT2G17030.1 | 30.326 | 399 | 229 | 13 | 4 | 366 | 2 | 387 | 3.80e-41 | 149 |
| Msa0746240 | AT2G17036.1 | 30.000 | 410 | 208 | 16 | 5 | 366 | 3 | 381 | 4.27e-36 | 135 |
| Msa0746240 | AT2G17036.2 | 30.000 | 410 | 208 | 16 | 5 | 366 | 2 | 380 | 4.37e-36 | 135 |
| Msa0746240 | AT5G60060.1 | 30.473 | 338 | 189 | 14 | 4 | 313 | 9 | 328 | 3.80e-23 | 99.8 |
| Msa0746240 | AT5G24040.1 | 26.234 | 385 | 230 | 16 | 6 | 362 | 4 | 362 | 4.13e-22 | 96.7 |
| Msa0746240 | AT3G25750.2 | 25.806 | 372 | 223 | 13 | 1 | 350 | 1 | 341 | 1.09e-15 | 78.2 |
| Msa0746240 | AT1G64840.1 | 25.072 | 347 | 213 | 13 | 5 | 326 | 4 | 328 | 3.48e-14 | 73.6 |
| Msa0746240 | AT2G24250.1 | 25.634 | 355 | 208 | 15 | 5 | 340 | 15 | 332 | 1.22e-12 | 68.9 |
| Msa0746240 | AT2G24250.2 | 25.634 | 355 | 208 | 15 | 5 | 340 | 15 | 332 | 1.22e-12 | 68.9 |
Find 101 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTACATGTCACCTAAAA+AGG | 0.164336 | 5_1:+68387682 | Msa0746240:CDS |
| TGGAGGGTTGTTACCGTTAA+TGG | 0.192998 | 5_1:-68387402 | None:intergenic |
| CTGAATATTCCAACTTGTTT+TGG | 0.229967 | 5_1:+68388263 | Msa0746240:CDS |
| CCTTATGTGGTTGACAAAAT+TGG | 0.235237 | 5_1:+68387860 | Msa0746240:CDS |
| CAAAATTGGTAAGACAATTA+TGG | 0.237183 | 5_1:+68387874 | Msa0746240:CDS |
| GTTGTTAGCGGACATTTATT+TGG | 0.239077 | 5_1:+68387985 | Msa0746240:CDS |
| CATAAGGCCGCCCTTTAAAA+AGG | 0.293579 | 5_1:-68387844 | None:intergenic |
| CCAAAGGTTCAGCCACTAAA+TGG | 0.299723 | 5_1:-68387916 | None:intergenic |
| TTAAACAAATCAACCCTTAC+AGG | 0.305277 | 5_1:-68388010 | None:intergenic |
| GGGTGAAGTTAACGAGTTTA+GGG | 0.316381 | 5_1:+68388056 | Msa0746240:CDS |
| GATGAGGTAGAGAGTTTGTT+TGG | 0.335342 | 5_1:-68387438 | None:intergenic |
| CAAAACAAGTTGGAATATTC+AGG | 0.336277 | 5_1:-68388262 | None:intergenic |
| TGGGTGAAGTTAACGAGTTT+AGG | 0.340496 | 5_1:+68388055 | Msa0746240:CDS |
| GACACGTTCGAGCTATGTTT+TGG | 0.341018 | 5_1:+68388201 | Msa0746240:CDS |
| CCATTTAGTGGCTGAACCTT+TGG | 0.364491 | 5_1:+68387916 | Msa0746240:CDS |
| ATTTCAAAAGTAACGGAAAT+GGG | 0.368549 | 5_1:-68387763 | None:intergenic |
| CATCCATGGCGGCGGCTGAC+TGG | 0.384621 | 5_1:+68387192 | None:intergenic |
| ACATTTATTTGGATCCTGTA+AGG | 0.408452 | 5_1:+68387996 | Msa0746240:CDS |
| CCAGACATCATTGACATGTT+GGG | 0.410370 | 5_1:-68387812 | None:intergenic |
| GCTGAACCTTTGGTTGGTGG+TGG | 0.421703 | 5_1:+68387926 | Msa0746240:CDS |
| ATTAGTGATGATATCTTAAG+AGG | 0.422300 | 5_1:+68388163 | Msa0746240:CDS |
| TGAAATGTGGCGATGAGAAT+TGG | 0.422591 | 5_1:+68387780 | Msa0746240:CDS |
| CATTTCAAAAGTAACGGAAA+TGG | 0.430717 | 5_1:-68387764 | None:intergenic |
| TTAATGGTATCCATGTCGTT+CGG | 0.438039 | 5_1:-68387386 | None:intergenic |
| TAATGGTATCCATGTCGTTC+GGG | 0.438554 | 5_1:-68387385 | None:intergenic |
| CAAATTATCTGTCCTCCCCT+TGG | 0.438670 | 5_1:+68387613 | Msa0746240:CDS |
| TGTTTGGAGAGGTGACATAA+TGG | 0.438793 | 5_1:-68387422 | None:intergenic |
| CCCAACATGTCAATGATGTC+TGG | 0.439669 | 5_1:+68387812 | Msa0746240:CDS |
| AGACTCAAGTGTCCATTTAG+TGG | 0.454277 | 5_1:+68387904 | Msa0746240:CDS |
| TATGCCCCTCTTTCTTGTAA+AGG | 0.454660 | 5_1:+68387572 | Msa0746240:CDS |
| GTGGGTGGAAGAATCGAGTT+TGG | 0.459083 | 5_1:-68387541 | None:intergenic |
| AGGAATGGTAATTTGATGAG+TGG | 0.464486 | 5_1:-68387356 | None:intergenic |
| GAGTTTGGCCACGCGTGTCT+TGG | 0.464716 | 5_1:-68387526 | None:intergenic |
| TTTGATGAGTGGGAACTTGA+AGG | 0.465161 | 5_1:-68387345 | None:intergenic |
| TTATCAACCGAGGGCGATGT+AGG | 0.467421 | 5_1:-68387496 | None:intergenic |
| TTGATGAGTGGGAACTTGAA+GGG | 0.473510 | 5_1:-68387344 | None:intergenic |
| CAGATTTGTGTGTTGCCAAA+GGG | 0.473760 | 5_1:+68388128 | Msa0746240:CDS |
| TTCGAAAATGTTGCTTCCCA+AGG | 0.477281 | 5_1:-68387630 | None:intergenic |
| GTGGCTGAACCTTTGGTTGG+TGG | 0.479791 | 5_1:+68387923 | Msa0746240:CDS |
| AATGATCAGACGATTCCCTT+TGG | 0.480331 | 5_1:-68388143 | None:intergenic |
| TCCAGACATCATTGACATGT+TGG | 0.483279 | 5_1:-68387813 | None:intergenic |
| AAATTATCTGTCCTCCCCTT+GGG | 0.488715 | 5_1:+68387614 | Msa0746240:CDS |
| AACGACATGGATACCATTAA+CGG | 0.491207 | 5_1:+68387389 | Msa0746240:CDS |
| CGATGGAGATTTGTTGTTAG+CGG | 0.496270 | 5_1:+68387973 | Msa0746240:CDS |
| CTGAACCTTTGGTTGGTGGT+GGG | 0.499010 | 5_1:+68387927 | Msa0746240:CDS |
| CATTTATTTGGATCCTGTAA+GGG | 0.505507 | 5_1:+68387997 | Msa0746240:CDS |
| GGGCATAATTGAGGAGTGGG+TGG | 0.508130 | 5_1:-68387556 | None:intergenic |
| TCAGATTGAGAAGGTCTGTT+GGG | 0.508699 | 5_1:-68387223 | None:intergenic |
| CGCCCTCGGTTGATAAGAGT+TGG | 0.516856 | 5_1:+68387503 | Msa0746240:CDS |
| GGAATGGTAATTTGATGAGT+GGG | 0.517636 | 5_1:-68387355 | None:intergenic |
| GAGGGGCATAATTGAGGAGT+GGG | 0.521945 | 5_1:-68387559 | None:intergenic |
| GGTAGAGAGTTTGTTTGGAG+AGG | 0.523099 | 5_1:-68387433 | None:intergenic |
| TTTGTTTAAGCTTAATGAGA+AGG | 0.523648 | 5_1:+68388024 | Msa0746240:CDS |
| ATCAGATTGAGAAGGTCTGT+TGG | 0.532634 | 5_1:-68387224 | None:intergenic |
| ATTGGTAAGACAATTATGGT+TGG | 0.532828 | 5_1:+68387878 | Msa0746240:CDS |
| TTAATGAGAAGGAGAAGAAG+TGG | 0.534717 | 5_1:+68388035 | Msa0746240:CDS |
| TCAGATTTGTGTGTTGCCAA+AGG | 0.534910 | 5_1:+68388127 | Msa0746240:CDS |
| TTAGTGGCTGAACCTTTGGT+TGG | 0.535767 | 5_1:+68387920 | Msa0746240:CDS |
| AAGAAAGAGGGGCATAATTG+AGG | 0.537377 | 5_1:-68387565 | None:intergenic |
| TCGAAAATGTTGCTTCCCAA+GGG | 0.543070 | 5_1:-68387629 | None:intergenic |
| TTGGAGAGGTGACATAATGG+AGG | 0.545448 | 5_1:-68387419 | None:intergenic |
| TAATGAGAAGGAGAAGAAGT+GGG | 0.560700 | 5_1:+68388036 | Msa0746240:CDS |
| ACACGACCTTTACAAGAAAG+AGG | 0.562861 | 5_1:-68387578 | None:intergenic |
| AGAGGGGCATAATTGAGGAG+TGG | 0.563500 | 5_1:-68387560 | None:intergenic |
| ACTCAGATCCGCCTAGGACG+TGG | 0.563518 | 5_1:-68388286 | None:intergenic |
| GTTGTTGCTGTCACGTGCCA+TGG | 0.565011 | 5_1:+68387704 | Msa0746240:CDS |
| AGACCAGTCAGCCGCCGCCA+TGG | 0.570454 | 5_1:-68387195 | None:intergenic |
| CACGACCTTTACAAGAAAGA+GGG | 0.572779 | 5_1:-68387577 | None:intergenic |
| CAAACCACCACCACAACAAG+AGG | 0.573251 | 5_1:+68387460 | Msa0746240:CDS |
| AGGACGTGGCCAAAACAAGT+TGG | 0.576346 | 5_1:-68388272 | None:intergenic |
| TATCAACCGAGGGCGATGTA+GGG | 0.579764 | 5_1:-68387495 | None:intergenic |
| AACAAACCCTACATCGCCCT+CGG | 0.587431 | 5_1:+68387489 | Msa0746240:CDS |
| TCCGATCAACTTGTTCAACA+TGG | 0.587534 | 5_1:+68387285 | Msa0746240:CDS |
| GTTGTGGTGGTGGTTTGATG+AGG | 0.588081 | 5_1:-68387454 | None:intergenic |
| TCGCCACATTTCAAAAGTAA+CGG | 0.591337 | 5_1:-68387770 | None:intergenic |
| TTTCAAAAGTAACGGAAATG+GGG | 0.594230 | 5_1:-68387762 | None:intergenic |
| GGCCAACTCTTATCAACCGA+GGG | 0.595357 | 5_1:-68387505 | None:intergenic |
| TGTGGCGATGAGAATTGGAA+GGG | 0.596145 | 5_1:+68387785 | Msa0746240:CDS |
| ATGTTCCCACCACCAACCAA+AGG | 0.598518 | 5_1:-68387932 | None:intergenic |
| CCTCTCTGACCCGAACGACA+TGG | 0.600032 | 5_1:+68387376 | Msa0746240:CDS |
| CAGACATCATTGACATGTTG+GGG | 0.601386 | 5_1:-68387811 | None:intergenic |
| ATGTGGCGATGAGAATTGGA+AGG | 0.601973 | 5_1:+68387784 | Msa0746240:CDS |
| TTCAAAAGTAACGGAAATGG+GGG | 0.605448 | 5_1:-68387761 | None:intergenic |
| GCCATGTTGAACAAGTTGAT+CGG | 0.610376 | 5_1:-68387286 | None:intergenic |
| GCTATTAGCATCCATGGCGG+CGG | 0.611380 | 5_1:+68387184 | None:intergenic |
| TAACGAACTCAGATCCGCCT+AGG | 0.630137 | 5_1:-68388292 | None:intergenic |
| AAATGTTGCTTCCCAAGGGG+AGG | 0.630335 | 5_1:-68387625 | None:intergenic |
| AAATTATTAGTAGAGAGCGA+TGG | 0.638936 | 5_1:+68387956 | Msa0746240:CDS |
| CGAAAATGTTGCTTCCCAAG+GGG | 0.641357 | 5_1:-68387628 | None:intergenic |
| GTGGCGATGAGAATTGGAAG+GGG | 0.647276 | 5_1:+68387786 | Msa0746240:CDS |
| TCAGGAGAATTGTACAAAGG+CGG | 0.648964 | 5_1:-68388244 | None:intergenic |
| CCATGTCGTTCGGGTCAGAG+AGG | 0.659750 | 5_1:-68387376 | None:intergenic |
| GTTGTGATATCAGATTGAGA+AGG | 0.660118 | 5_1:-68387232 | None:intergenic |
| TGGCCAACTCTTATCAACCG+AGG | 0.662560 | 5_1:-68387506 | None:intergenic |
| TCGTTCGGGTCAGAGAGGAA+TGG | 0.667797 | 5_1:-68387371 | None:intergenic |
| GGTGAAGTTAACGAGTTTAG+GGG | 0.668574 | 5_1:+68388057 | Msa0746240:CDS |
| AGAGTTGGCCAAGACACGCG+TGG | 0.675463 | 5_1:+68387518 | Msa0746240:CDS |
| TATTCAGGAGAATTGTACAA+AGG | 0.676739 | 5_1:-68388247 | None:intergenic |
| TGGAGAGGTGACATAATGGA+GGG | 0.681017 | 5_1:-68387418 | None:intergenic |
| ACGACCTTTACAAGAAAGAG+GGG | 0.695224 | 5_1:-68387576 | None:intergenic |
| TAAGAGGACTTGATAGACGT+AGG | 0.713994 | 5_1:+68388179 | Msa0746240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAAATTTGAAGAAGTTTT+CGG | - | chr5_1:68387325-68387344 | None:intergenic | 20.0% |
| !!! | GTAAAATTTGAAGAAGTTTT+CGG | - | chr5_1:68387325-68387344 | None:intergenic | 20.0% |
| !! | ATTTCAAAAGTAACGGAAAT+GGG | - | chr5_1:68387766-68387785 | None:intergenic | 25.0% |
| ! | CAAAATTGGTAAGACAATTA+TGG | + | chr5_1:68387874-68387893 | Msa0746240:CDS | 25.0% |
| ! | TTTGTTTAAGCTTAATGAGA+AGG | + | chr5_1:68388024-68388043 | Msa0746240:CDS | 25.0% |
| ! | ATTAGTGATGATATCTTAAG+AGG | + | chr5_1:68388163-68388182 | Msa0746240:CDS | 25.0% |
| !! | ATTTCAAAAGTAACGGAAAT+GGG | - | chr5_1:68387766-68387785 | None:intergenic | 25.0% |
| ! | CAAAATTGGTAAGACAATTA+TGG | + | chr5_1:68387874-68387893 | Msa0746240:CDS | 25.0% |
| ! | TTTGTTTAAGCTTAATGAGA+AGG | + | chr5_1:68388024-68388043 | Msa0746240:CDS | 25.0% |
| ! | ATTAGTGATGATATCTTAAG+AGG | + | chr5_1:68388163-68388182 | Msa0746240:CDS | 25.0% |
| ! | AATTTGAAGAAGTTTTCGGA+CGG | - | chr5_1:68387321-68387340 | None:intergenic | 30.0% |
| !!! | ACAATCGAGTGCTTTATTTT+TGG | - | chr5_1:68387663-68387682 | None:intergenic | 30.0% |
| TTTCTACATGTCACCTAAAA+AGG | + | chr5_1:68387682-68387701 | Msa0746240:CDS | 30.0% | |
| ! | TTTCAAAAGTAACGGAAATG+GGG | - | chr5_1:68387765-68387784 | None:intergenic | 30.0% |
| ! | CATTTCAAAAGTAACGGAAA+TGG | - | chr5_1:68387767-68387786 | None:intergenic | 30.0% |
| !!! | TTTCCGTTACTTTTGAAATG+TGG | + | chr5_1:68387767-68387786 | Msa0746240:CDS | 30.0% |
| ! | GAGACATATGCCTTTTTAAA+GGG | + | chr5_1:68387834-68387853 | Msa0746240:CDS | 30.0% |
| ATTGGTAAGACAATTATGGT+TGG | + | chr5_1:68387878-68387897 | Msa0746240:CDS | 30.0% | |
| AAATTATTAGTAGAGAGCGA+TGG | + | chr5_1:68387956-68387975 | Msa0746240:CDS | 30.0% | |
| ACATTTATTTGGATCCTGTA+AGG | + | chr5_1:68387996-68388015 | Msa0746240:CDS | 30.0% | |
| CATTTATTTGGATCCTGTAA+GGG | + | chr5_1:68387997-68388016 | Msa0746240:CDS | 30.0% | |
| TTAAACAAATCAACCCTTAC+AGG | - | chr5_1:68388013-68388032 | None:intergenic | 30.0% | |
| TATTCAGGAGAATTGTACAA+AGG | - | chr5_1:68388250-68388269 | None:intergenic | 30.0% | |
| ! | CAAAACAAGTTGGAATATTC+AGG | - | chr5_1:68388265-68388284 | None:intergenic | 30.0% |
| !! | CTGAATATTCCAACTTGTTT+TGG | + | chr5_1:68388263-68388282 | Msa0746240:CDS | 30.0% |
| ! | AATTTGAAGAAGTTTTCGGA+CGG | - | chr5_1:68387321-68387340 | None:intergenic | 30.0% |
| !!! | ACAATCGAGTGCTTTATTTT+TGG | - | chr5_1:68387663-68387682 | None:intergenic | 30.0% |
| TTTCTACATGTCACCTAAAA+AGG | + | chr5_1:68387682-68387701 | Msa0746240:CDS | 30.0% | |
| ! | TTTCAAAAGTAACGGAAATG+GGG | - | chr5_1:68387765-68387784 | None:intergenic | 30.0% |
| ! | CATTTCAAAAGTAACGGAAA+TGG | - | chr5_1:68387767-68387786 | None:intergenic | 30.0% |
| !!! | TTTCCGTTACTTTTGAAATG+TGG | + | chr5_1:68387767-68387786 | Msa0746240:CDS | 30.0% |
| ! | GAGACATATGCCTTTTTAAA+GGG | + | chr5_1:68387834-68387853 | Msa0746240:CDS | 30.0% |
| ATTGGTAAGACAATTATGGT+TGG | + | chr5_1:68387878-68387897 | Msa0746240:CDS | 30.0% | |
| AAATTATTAGTAGAGAGCGA+TGG | + | chr5_1:68387956-68387975 | Msa0746240:CDS | 30.0% | |
| ACATTTATTTGGATCCTGTA+AGG | + | chr5_1:68387996-68388015 | Msa0746240:CDS | 30.0% | |
| CATTTATTTGGATCCTGTAA+GGG | + | chr5_1:68387997-68388016 | Msa0746240:CDS | 30.0% | |
| TTAAACAAATCAACCCTTAC+AGG | - | chr5_1:68388013-68388032 | None:intergenic | 30.0% | |
| TATTCAGGAGAATTGTACAA+AGG | - | chr5_1:68388250-68388269 | None:intergenic | 30.0% | |
| ! | CAAAACAAGTTGGAATATTC+AGG | - | chr5_1:68388265-68388284 | None:intergenic | 30.0% |
| !! | CTGAATATTCCAACTTGTTT+TGG | + | chr5_1:68388263-68388282 | Msa0746240:CDS | 30.0% |
| GTTGTGATATCAGATTGAGA+AGG | - | chr5_1:68387235-68387254 | None:intergenic | 35.0% | |
| GGAATGGTAATTTGATGAGT+GGG | - | chr5_1:68387358-68387377 | None:intergenic | 35.0% | |
| AGGAATGGTAATTTGATGAG+TGG | - | chr5_1:68387359-68387378 | None:intergenic | 35.0% | |
| TTAATGGTATCCATGTCGTT+CGG | - | chr5_1:68387389-68387408 | None:intergenic | 35.0% | |
| AACGACATGGATACCATTAA+CGG | + | chr5_1:68387389-68387408 | Msa0746240:CDS | 35.0% | |
| ! | TGTTCTTTTTCCTCTTGTTG+TGG | - | chr5_1:68387473-68387492 | None:intergenic | 35.0% |
| AAATGGGGGATAAGAAAAAC+TGG | - | chr5_1:68387750-68387769 | None:intergenic | 35.0% | |
| ! | TTCAAAAGTAACGGAAATGG+GGG | - | chr5_1:68387764-68387783 | None:intergenic | 35.0% |
| TCGCCACATTTCAAAAGTAA+CGG | - | chr5_1:68387773-68387792 | None:intergenic | 35.0% | |
| ! | GGAGACATATGCCTTTTTAA+AGG | + | chr5_1:68387833-68387852 | Msa0746240:CDS | 35.0% |
| !! | ACATATGCCTTTTTAAAGGG+CGG | + | chr5_1:68387837-68387856 | Msa0746240:CDS | 35.0% |
| ! | CCAATTTTGTCAACCACATA+AGG | - | chr5_1:68387863-68387882 | None:intergenic | 35.0% |
| CCTTATGTGGTTGACAAAAT+TGG | + | chr5_1:68387860-68387879 | Msa0746240:CDS | 35.0% | |
| ! | GTTGTTAGCGGACATTTATT+TGG | + | chr5_1:68387985-68388004 | Msa0746240:CDS | 35.0% |
| TTAATGAGAAGGAGAAGAAG+TGG | + | chr5_1:68388035-68388054 | Msa0746240:CDS | 35.0% | |
| TAATGAGAAGGAGAAGAAGT+GGG | + | chr5_1:68388036-68388055 | Msa0746240:CDS | 35.0% | |
| !! | TATGTTTTGGACTTGGATCA+AGG | + | chr5_1:68388214-68388233 | Msa0746240:CDS | 35.0% |
| GTTGTGATATCAGATTGAGA+AGG | - | chr5_1:68387235-68387254 | None:intergenic | 35.0% | |
| GGAATGGTAATTTGATGAGT+GGG | - | chr5_1:68387358-68387377 | None:intergenic | 35.0% | |
| AGGAATGGTAATTTGATGAG+TGG | - | chr5_1:68387359-68387378 | None:intergenic | 35.0% | |
| TTAATGGTATCCATGTCGTT+CGG | - | chr5_1:68387389-68387408 | None:intergenic | 35.0% | |
| AACGACATGGATACCATTAA+CGG | + | chr5_1:68387389-68387408 | Msa0746240:CDS | 35.0% | |
| ! | TGTTCTTTTTCCTCTTGTTG+TGG | - | chr5_1:68387473-68387492 | None:intergenic | 35.0% |
| AAATGGGGGATAAGAAAAAC+TGG | - | chr5_1:68387750-68387769 | None:intergenic | 35.0% | |
| ! | TTCAAAAGTAACGGAAATGG+GGG | - | chr5_1:68387764-68387783 | None:intergenic | 35.0% |
| TCGCCACATTTCAAAAGTAA+CGG | - | chr5_1:68387773-68387792 | None:intergenic | 35.0% | |
| ! | GGAGACATATGCCTTTTTAA+AGG | + | chr5_1:68387833-68387852 | Msa0746240:CDS | 35.0% |
| !! | ACATATGCCTTTTTAAAGGG+CGG | + | chr5_1:68387837-68387856 | Msa0746240:CDS | 35.0% |
| ! | CCAATTTTGTCAACCACATA+AGG | - | chr5_1:68387863-68387882 | None:intergenic | 35.0% |
| CCTTATGTGGTTGACAAAAT+TGG | + | chr5_1:68387860-68387879 | Msa0746240:CDS | 35.0% | |
| ! | GTTGTTAGCGGACATTTATT+TGG | + | chr5_1:68387985-68388004 | Msa0746240:CDS | 35.0% |
| TTAATGAGAAGGAGAAGAAG+TGG | + | chr5_1:68388035-68388054 | Msa0746240:CDS | 35.0% | |
| TAATGAGAAGGAGAAGAAGT+GGG | + | chr5_1:68388036-68388055 | Msa0746240:CDS | 35.0% | |
| !! | TATGTTTTGGACTTGGATCA+AGG | + | chr5_1:68388214-68388233 | Msa0746240:CDS | 35.0% |
| TCAGATTGAGAAGGTCTGTT+GGG | - | chr5_1:68387226-68387245 | None:intergenic | 40.0% | |
| ATCAGATTGAGAAGGTCTGT+TGG | - | chr5_1:68387227-68387246 | None:intergenic | 40.0% | |
| ! | TCCGATCAACTTGTTCAACA+TGG | + | chr5_1:68387285-68387304 | Msa0746240:CDS | 40.0% |
| !! | GCCATGTTGAACAAGTTGAT+CGG | - | chr5_1:68387289-68387308 | None:intergenic | 40.0% |
| TTGATGAGTGGGAACTTGAA+GGG | - | chr5_1:68387347-68387366 | None:intergenic | 40.0% | |
| TTTGATGAGTGGGAACTTGA+AGG | - | chr5_1:68387348-68387367 | None:intergenic | 40.0% | |
| TAATGGTATCCATGTCGTTC+GGG | - | chr5_1:68387388-68387407 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTGACATAA+TGG | - | chr5_1:68387425-68387444 | None:intergenic | 40.0% | |
| ! | GATGAGGTAGAGAGTTTGTT+TGG | - | chr5_1:68387441-68387460 | None:intergenic | 40.0% |
| !! | TCTTTTTCCTCTTGTTGTGG+TGG | - | chr5_1:68387470-68387489 | None:intergenic | 40.0% |
| ! | AAGAAAGAGGGGCATAATTG+AGG | - | chr5_1:68387568-68387587 | None:intergenic | 40.0% |
| TATGCCCCTCTTTCTTGTAA+AGG | + | chr5_1:68387572-68387591 | Msa0746240:CDS | 40.0% | |
| ACGACCTTTACAAGAAAGAG+GGG | - | chr5_1:68387579-68387598 | None:intergenic | 40.0% | |
| CACGACCTTTACAAGAAAGA+GGG | - | chr5_1:68387580-68387599 | None:intergenic | 40.0% | |
| ACACGACCTTTACAAGAAAG+AGG | - | chr5_1:68387581-68387600 | None:intergenic | 40.0% | |
| AAATTATCTGTCCTCCCCTT+GGG | + | chr5_1:68387614-68387633 | Msa0746240:CDS | 40.0% | |
| ! | TCGAAAATGTTGCTTCCCAA+GGG | - | chr5_1:68387632-68387651 | None:intergenic | 40.0% |
| ! | TTCGAAAATGTTGCTTCCCA+AGG | - | chr5_1:68387633-68387652 | None:intergenic | 40.0% |
| ! | GTGACAGCAACAACCTTTTT+AGG | - | chr5_1:68387698-68387717 | None:intergenic | 40.0% |
| !!! | CAATGAGAGGGTTTTTTCCA+TGG | - | chr5_1:68387724-68387743 | None:intergenic | 40.0% |
| AAAAACTGGCGACAATGAGA+GGG | - | chr5_1:68387736-68387755 | None:intergenic | 40.0% | |
| TGAAATGTGGCGATGAGAAT+TGG | + | chr5_1:68387780-68387799 | Msa0746240:CDS | 40.0% | |
| CAGACATCATTGACATGTTG+GGG | - | chr5_1:68387814-68387833 | None:intergenic | 40.0% | |
| CCAGACATCATTGACATGTT+GGG | - | chr5_1:68387815-68387834 | None:intergenic | 40.0% | |
| TCCAGACATCATTGACATGT+TGG | - | chr5_1:68387816-68387835 | None:intergenic | 40.0% | |
| AGACTCAAGTGTCCATTTAG+TGG | + | chr5_1:68387904-68387923 | Msa0746240:CDS | 40.0% | |
| !! | CGATGGAGATTTGTTGTTAG+CGG | + | chr5_1:68387973-68387992 | Msa0746240:CDS | 40.0% |
| TGGGTGAAGTTAACGAGTTT+AGG | + | chr5_1:68388055-68388074 | Msa0746240:CDS | 40.0% | |
| GGGTGAAGTTAACGAGTTTA+GGG | + | chr5_1:68388056-68388075 | Msa0746240:CDS | 40.0% | |
| GGTGAAGTTAACGAGTTTAG+GGG | + | chr5_1:68388057-68388076 | Msa0746240:CDS | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | chr5_1:68388075-68388094 | Msa0746240:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | chr5_1:68388076-68388095 | Msa0746240:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | chr5_1:68388077-68388096 | Msa0746240:CDS | 40.0% |
| TCAGATTTGTGTGTTGCCAA+AGG | + | chr5_1:68388127-68388146 | Msa0746240:CDS | 40.0% | |
| CAGATTTGTGTGTTGCCAAA+GGG | + | chr5_1:68388128-68388147 | Msa0746240:CDS | 40.0% | |
| AATGATCAGACGATTCCCTT+TGG | - | chr5_1:68388146-68388165 | None:intergenic | 40.0% | |
| TAAGAGGACTTGATAGACGT+AGG | + | chr5_1:68388179-68388198 | Msa0746240:CDS | 40.0% | |
| !! | TTCGAGCTATGTTTTGGACT+TGG | + | chr5_1:68388207-68388226 | Msa0746240:CDS | 40.0% |
| TCAGGAGAATTGTACAAAGG+CGG | - | chr5_1:68388247-68388266 | None:intergenic | 40.0% | |
| TCAGATTGAGAAGGTCTGTT+GGG | - | chr5_1:68387226-68387245 | None:intergenic | 40.0% | |
| ATCAGATTGAGAAGGTCTGT+TGG | - | chr5_1:68387227-68387246 | None:intergenic | 40.0% | |
| ! | TCCGATCAACTTGTTCAACA+TGG | + | chr5_1:68387285-68387304 | Msa0746240:CDS | 40.0% |
| !! | GCCATGTTGAACAAGTTGAT+CGG | - | chr5_1:68387289-68387308 | None:intergenic | 40.0% |
| TTGATGAGTGGGAACTTGAA+GGG | - | chr5_1:68387347-68387366 | None:intergenic | 40.0% | |
| TTTGATGAGTGGGAACTTGA+AGG | - | chr5_1:68387348-68387367 | None:intergenic | 40.0% | |
| TAATGGTATCCATGTCGTTC+GGG | - | chr5_1:68387388-68387407 | None:intergenic | 40.0% | |
| TGTTTGGAGAGGTGACATAA+TGG | - | chr5_1:68387425-68387444 | None:intergenic | 40.0% | |
| ! | GATGAGGTAGAGAGTTTGTT+TGG | - | chr5_1:68387441-68387460 | None:intergenic | 40.0% |
| !! | TCTTTTTCCTCTTGTTGTGG+TGG | - | chr5_1:68387470-68387489 | None:intergenic | 40.0% |
| ! | AAGAAAGAGGGGCATAATTG+AGG | - | chr5_1:68387568-68387587 | None:intergenic | 40.0% |
| TATGCCCCTCTTTCTTGTAA+AGG | + | chr5_1:68387572-68387591 | Msa0746240:CDS | 40.0% | |
| ACGACCTTTACAAGAAAGAG+GGG | - | chr5_1:68387579-68387598 | None:intergenic | 40.0% | |
| CACGACCTTTACAAGAAAGA+GGG | - | chr5_1:68387580-68387599 | None:intergenic | 40.0% | |
| ACACGACCTTTACAAGAAAG+AGG | - | chr5_1:68387581-68387600 | None:intergenic | 40.0% | |
| AAATTATCTGTCCTCCCCTT+GGG | + | chr5_1:68387614-68387633 | Msa0746240:CDS | 40.0% | |
| ! | TCGAAAATGTTGCTTCCCAA+GGG | - | chr5_1:68387632-68387651 | None:intergenic | 40.0% |
| ! | TTCGAAAATGTTGCTTCCCA+AGG | - | chr5_1:68387633-68387652 | None:intergenic | 40.0% |
| ! | GTGACAGCAACAACCTTTTT+AGG | - | chr5_1:68387698-68387717 | None:intergenic | 40.0% |
| !!! | CAATGAGAGGGTTTTTTCCA+TGG | - | chr5_1:68387724-68387743 | None:intergenic | 40.0% |
| AAAAACTGGCGACAATGAGA+GGG | - | chr5_1:68387736-68387755 | None:intergenic | 40.0% | |
| TGAAATGTGGCGATGAGAAT+TGG | + | chr5_1:68387780-68387799 | Msa0746240:CDS | 40.0% | |
| CAGACATCATTGACATGTTG+GGG | - | chr5_1:68387814-68387833 | None:intergenic | 40.0% | |
| CCAGACATCATTGACATGTT+GGG | - | chr5_1:68387815-68387834 | None:intergenic | 40.0% | |
| TCCAGACATCATTGACATGT+TGG | - | chr5_1:68387816-68387835 | None:intergenic | 40.0% | |
| AGACTCAAGTGTCCATTTAG+TGG | + | chr5_1:68387904-68387923 | Msa0746240:CDS | 40.0% | |
| !! | CGATGGAGATTTGTTGTTAG+CGG | + | chr5_1:68387973-68387992 | Msa0746240:CDS | 40.0% |
| TGGGTGAAGTTAACGAGTTT+AGG | + | chr5_1:68388055-68388074 | Msa0746240:CDS | 40.0% | |
| GGGTGAAGTTAACGAGTTTA+GGG | + | chr5_1:68388056-68388075 | Msa0746240:CDS | 40.0% | |
| GGTGAAGTTAACGAGTTTAG+GGG | + | chr5_1:68388057-68388076 | Msa0746240:CDS | 40.0% | |
| !!! | AGGGGATAGAGTTTTGTTCT+TGG | + | chr5_1:68388075-68388094 | Msa0746240:CDS | 40.0% |
| !!! | GGGGATAGAGTTTTGTTCTT+GGG | + | chr5_1:68388076-68388095 | Msa0746240:CDS | 40.0% |
| !!! | GGGATAGAGTTTTGTTCTTG+GGG | + | chr5_1:68388077-68388096 | Msa0746240:CDS | 40.0% |
| TCAGATTTGTGTGTTGCCAA+AGG | + | chr5_1:68388127-68388146 | Msa0746240:CDS | 40.0% | |
| CAGATTTGTGTGTTGCCAAA+GGG | + | chr5_1:68388128-68388147 | Msa0746240:CDS | 40.0% | |
| AATGATCAGACGATTCCCTT+TGG | - | chr5_1:68388146-68388165 | None:intergenic | 40.0% | |
| TAAGAGGACTTGATAGACGT+AGG | + | chr5_1:68388179-68388198 | Msa0746240:CDS | 40.0% | |
| !! | TTCGAGCTATGTTTTGGACT+TGG | + | chr5_1:68388207-68388226 | Msa0746240:CDS | 40.0% |
| TCAGGAGAATTGTACAAAGG+CGG | - | chr5_1:68388247-68388266 | None:intergenic | 40.0% | |
| ! | TTGAAGAAGTTTTCGGACGG+AGG | - | chr5_1:68387318-68387337 | None:intergenic | 45.0% |
| TGGAGGGTTGTTACCGTTAA+TGG | - | chr5_1:68387405-68387424 | None:intergenic | 45.0% | |
| ! | TGGAGAGGTGACATAATGGA+GGG | - | chr5_1:68387421-68387440 | None:intergenic | 45.0% |
| TTGGAGAGGTGACATAATGG+AGG | - | chr5_1:68387422-68387441 | None:intergenic | 45.0% | |
| ! | GGTAGAGAGTTTGTTTGGAG+AGG | - | chr5_1:68387436-68387455 | None:intergenic | 45.0% |
| !! | TTTTCCTCTTGTTGTGGTGG+TGG | - | chr5_1:68387467-68387486 | None:intergenic | 45.0% |
| CAAATTATCTGTCCTCCCCT+TGG | + | chr5_1:68387613-68387632 | Msa0746240:CDS | 45.0% | |
| ! | CGAAAATGTTGCTTCCCAAG+GGG | - | chr5_1:68387631-68387650 | None:intergenic | 45.0% |
| GAAAAACTGGCGACAATGAG+AGG | - | chr5_1:68387737-68387756 | None:intergenic | 45.0% | |
| ATGTGGCGATGAGAATTGGA+AGG | + | chr5_1:68387784-68387803 | Msa0746240:CDS | 45.0% | |
| TGTGGCGATGAGAATTGGAA+GGG | + | chr5_1:68387785-68387804 | Msa0746240:CDS | 45.0% | |
| CCCAACATGTCAATGATGTC+TGG | + | chr5_1:68387812-68387831 | Msa0746240:CDS | 45.0% | |
| ! | CATAAGGCCGCCCTTTAAAA+AGG | - | chr5_1:68387847-68387866 | None:intergenic | 45.0% |
| !! | TTTTAAAGGGCGGCCTTATG+TGG | + | chr5_1:68387847-68387866 | Msa0746240:CDS | 45.0% |
| CCAAAGGTTCAGCCACTAAA+TGG | - | chr5_1:68387919-68387938 | None:intergenic | 45.0% | |
| CCATTTAGTGGCTGAACCTT+TGG | + | chr5_1:68387916-68387935 | Msa0746240:CDS | 45.0% | |
| TTAGTGGCTGAACCTTTGGT+TGG | + | chr5_1:68387920-68387939 | Msa0746240:CDS | 45.0% | |
| ! | GACACGTTCGAGCTATGTTT+TGG | + | chr5_1:68388201-68388220 | Msa0746240:CDS | 45.0% |
| ! | TTGAAGAAGTTTTCGGACGG+AGG | - | chr5_1:68387318-68387337 | None:intergenic | 45.0% |
| TGGAGGGTTGTTACCGTTAA+TGG | - | chr5_1:68387405-68387424 | None:intergenic | 45.0% | |
| ! | TGGAGAGGTGACATAATGGA+GGG | - | chr5_1:68387421-68387440 | None:intergenic | 45.0% |
| TTGGAGAGGTGACATAATGG+AGG | - | chr5_1:68387422-68387441 | None:intergenic | 45.0% | |
| ! | GGTAGAGAGTTTGTTTGGAG+AGG | - | chr5_1:68387436-68387455 | None:intergenic | 45.0% |
| !! | TTTTCCTCTTGTTGTGGTGG+TGG | - | chr5_1:68387467-68387486 | None:intergenic | 45.0% |
| CAAATTATCTGTCCTCCCCT+TGG | + | chr5_1:68387613-68387632 | Msa0746240:CDS | 45.0% | |
| ! | CGAAAATGTTGCTTCCCAAG+GGG | - | chr5_1:68387631-68387650 | None:intergenic | 45.0% |
| GAAAAACTGGCGACAATGAG+AGG | - | chr5_1:68387737-68387756 | None:intergenic | 45.0% | |
| ATGTGGCGATGAGAATTGGA+AGG | + | chr5_1:68387784-68387803 | Msa0746240:CDS | 45.0% | |
| TGTGGCGATGAGAATTGGAA+GGG | + | chr5_1:68387785-68387804 | Msa0746240:CDS | 45.0% | |
| CCCAACATGTCAATGATGTC+TGG | + | chr5_1:68387812-68387831 | Msa0746240:CDS | 45.0% | |
| ! | CATAAGGCCGCCCTTTAAAA+AGG | - | chr5_1:68387847-68387866 | None:intergenic | 45.0% |
| !! | TTTTAAAGGGCGGCCTTATG+TGG | + | chr5_1:68387847-68387866 | Msa0746240:CDS | 45.0% |
| CCAAAGGTTCAGCCACTAAA+TGG | - | chr5_1:68387919-68387938 | None:intergenic | 45.0% | |
| CCATTTAGTGGCTGAACCTT+TGG | + | chr5_1:68387916-68387935 | Msa0746240:CDS | 45.0% | |
| TTAGTGGCTGAACCTTTGGT+TGG | + | chr5_1:68387920-68387939 | Msa0746240:CDS | 45.0% | |
| ! | GACACGTTCGAGCTATGTTT+TGG | + | chr5_1:68388201-68388220 | Msa0746240:CDS | 45.0% |
| !! | GTTGTGGTGGTGGTTTGATG+AGG | - | chr5_1:68387457-68387476 | None:intergenic | 50.0% |
| CAAACCACCACCACAACAAG+AGG | + | chr5_1:68387460-68387479 | Msa0746240:CDS | 50.0% | |
| AACAAACCCTACATCGCCCT+CGG | + | chr5_1:68387489-68387508 | Msa0746240:CDS | 50.0% | |
| TATCAACCGAGGGCGATGTA+GGG | - | chr5_1:68387498-68387517 | None:intergenic | 50.0% | |
| TTATCAACCGAGGGCGATGT+AGG | - | chr5_1:68387499-68387518 | None:intergenic | 50.0% | |
| GGCCAACTCTTATCAACCGA+GGG | - | chr5_1:68387508-68387527 | None:intergenic | 50.0% | |
| TGGCCAACTCTTATCAACCG+AGG | - | chr5_1:68387509-68387528 | None:intergenic | 50.0% | |
| GTGGGTGGAAGAATCGAGTT+TGG | - | chr5_1:68387544-68387563 | None:intergenic | 50.0% | |
| ! | GAGGGGCATAATTGAGGAGT+GGG | - | chr5_1:68387562-68387581 | None:intergenic | 50.0% |
| ! | AGAGGGGCATAATTGAGGAG+TGG | - | chr5_1:68387563-68387582 | None:intergenic | 50.0% |
| ! | AAATGTTGCTTCCCAAGGGG+AGG | - | chr5_1:68387628-68387647 | None:intergenic | 50.0% |
| GTGGCGATGAGAATTGGAAG+GGG | + | chr5_1:68387786-68387805 | Msa0746240:CDS | 50.0% | |
| !! | CTGAACCTTTGGTTGGTGGT+GGG | + | chr5_1:68387927-68387946 | Msa0746240:CDS | 50.0% |
| ATGTTCCCACCACCAACCAA+AGG | - | chr5_1:68387935-68387954 | None:intergenic | 50.0% | |
| AGGACGTGGCCAAAACAAGT+TGG | - | chr5_1:68388275-68388294 | None:intergenic | 50.0% | |
| !!! | ACTTGTTTTGGCCACGTCCT+AGG | + | chr5_1:68388275-68388294 | Msa0746240:CDS | 50.0% |
| !! | GTTGTGGTGGTGGTTTGATG+AGG | - | chr5_1:68387457-68387476 | None:intergenic | 50.0% |
| CAAACCACCACCACAACAAG+AGG | + | chr5_1:68387460-68387479 | Msa0746240:CDS | 50.0% | |
| AACAAACCCTACATCGCCCT+CGG | + | chr5_1:68387489-68387508 | Msa0746240:CDS | 50.0% | |
| TATCAACCGAGGGCGATGTA+GGG | - | chr5_1:68387498-68387517 | None:intergenic | 50.0% | |
| TTATCAACCGAGGGCGATGT+AGG | - | chr5_1:68387499-68387518 | None:intergenic | 50.0% | |
| GGCCAACTCTTATCAACCGA+GGG | - | chr5_1:68387508-68387527 | None:intergenic | 50.0% | |
| TGGCCAACTCTTATCAACCG+AGG | - | chr5_1:68387509-68387528 | None:intergenic | 50.0% | |
| GTGGGTGGAAGAATCGAGTT+TGG | - | chr5_1:68387544-68387563 | None:intergenic | 50.0% | |
| ! | GAGGGGCATAATTGAGGAGT+GGG | - | chr5_1:68387562-68387581 | None:intergenic | 50.0% |
| ! | AGAGGGGCATAATTGAGGAG+TGG | - | chr5_1:68387563-68387582 | None:intergenic | 50.0% |
| ! | AAATGTTGCTTCCCAAGGGG+AGG | - | chr5_1:68387628-68387647 | None:intergenic | 50.0% |
| GTGGCGATGAGAATTGGAAG+GGG | + | chr5_1:68387786-68387805 | Msa0746240:CDS | 50.0% | |
| !! | CTGAACCTTTGGTTGGTGGT+GGG | + | chr5_1:68387927-68387946 | Msa0746240:CDS | 50.0% |
| ATGTTCCCACCACCAACCAA+AGG | - | chr5_1:68387935-68387954 | None:intergenic | 50.0% | |
| AGGACGTGGCCAAAACAAGT+TGG | - | chr5_1:68388275-68388294 | None:intergenic | 50.0% | |
| !!! | ACTTGTTTTGGCCACGTCCT+AGG | + | chr5_1:68388275-68388294 | Msa0746240:CDS | 50.0% |
| TCGTTCGGGTCAGAGAGGAA+TGG | - | chr5_1:68387374-68387393 | None:intergenic | 55.0% | |
| !! | CGCCCTCGGTTGATAAGAGT+TGG | + | chr5_1:68387503-68387522 | Msa0746240:CDS | 55.0% |
| GGGCATAATTGAGGAGTGGG+TGG | - | chr5_1:68387559-68387578 | None:intergenic | 55.0% | |
| GTTGTTGCTGTCACGTGCCA+TGG | + | chr5_1:68387704-68387723 | Msa0746240:CDS | 55.0% | |
| GTGGCTGAACCTTTGGTTGG+TGG | + | chr5_1:68387923-68387942 | Msa0746240:CDS | 55.0% | |
| !! | GCTGAACCTTTGGTTGGTGG+TGG | + | chr5_1:68387926-68387945 | Msa0746240:CDS | 55.0% |
| !!! | TGTTTTGGCCACGTCCTAGG+CGG | + | chr5_1:68388278-68388297 | Msa0746240:CDS | 55.0% |
| TCGTTCGGGTCAGAGAGGAA+TGG | - | chr5_1:68387374-68387393 | None:intergenic | 55.0% | |
| !! | CGCCCTCGGTTGATAAGAGT+TGG | + | chr5_1:68387503-68387522 | Msa0746240:CDS | 55.0% |
| GGGCATAATTGAGGAGTGGG+TGG | - | chr5_1:68387559-68387578 | None:intergenic | 55.0% | |
| GTTGTTGCTGTCACGTGCCA+TGG | + | chr5_1:68387704-68387723 | Msa0746240:CDS | 55.0% | |
| GTGGCTGAACCTTTGGTTGG+TGG | + | chr5_1:68387923-68387942 | Msa0746240:CDS | 55.0% | |
| !! | GCTGAACCTTTGGTTGGTGG+TGG | + | chr5_1:68387926-68387945 | Msa0746240:CDS | 55.0% |
| !!! | TGTTTTGGCCACGTCCTAGG+CGG | + | chr5_1:68388278-68388297 | Msa0746240:CDS | 55.0% |
| CCATGTCGTTCGGGTCAGAG+AGG | - | chr5_1:68387379-68387398 | None:intergenic | 60.0% | |
| CCTCTCTGACCCGAACGACA+TGG | + | chr5_1:68387376-68387395 | Msa0746240:CDS | 60.0% | |
| AGAGTTGGCCAAGACACGCG+TGG | + | chr5_1:68387518-68387537 | Msa0746240:CDS | 60.0% | |
| GAGTTTGGCCACGCGTGTCT+TGG | - | chr5_1:68387529-68387548 | None:intergenic | 60.0% | |
| CCATGTCGTTCGGGTCAGAG+AGG | - | chr5_1:68387379-68387398 | None:intergenic | 60.0% | |
| CCTCTCTGACCCGAACGACA+TGG | + | chr5_1:68387376-68387395 | Msa0746240:CDS | 60.0% | |
| AGAGTTGGCCAAGACACGCG+TGG | + | chr5_1:68387518-68387537 | Msa0746240:CDS | 60.0% | |
| GAGTTTGGCCACGCGTGTCT+TGG | - | chr5_1:68387529-68387548 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 68387197 | 68388306 | 68387197 | ID=Msa0746240;Name=Msa0746240 |
| chr5_1 | mRNA | 68387197 | 68388306 | 68387197 | ID=Msa0746240-mRNA-1;Parent=Msa0746240;Name=Msa0746240-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|369 |
| chr5_1 | exon | 68387197 | 68388306 | 68387197 | ID=Msa0746240-mRNA-1:exon:20386;Parent=Msa0746240-mRNA-1 |
| chr5_1 | CDS | 68387197 | 68388306 | 68387197 | ID=Msa0746240-mRNA-1:cds;Parent=Msa0746240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
