Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749100 | CAB4302962.1 | 80.769 | 78 | 15 | 0 | 1 | 78 | 1 | 78 | 7.19e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749100 | sp|P49689|RS30_ARATH | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 3.87e-29 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749100 | A0A6J5WTG2 | 80.769 | 78 | 15 | 0 | 1 | 78 | 1 | 78 | 3.43e-37 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0749100 | Msa1084560 | 0.897213 | 1.747989e-76 | -8.615850e-47 |
| Msa0749100 | Msa1132630 | 0.801525 | 8.643033e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749100 | MtrunA17_Chr4g0056141 | 100.000 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 9.06e-40 | 125 |
| Msa0749100 | MtrunA17_Chr5g0399231 | 100.000 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 9.06e-40 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749100 | AT2G19750.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 3.94e-30 | 101 |
| Msa0749100 | AT5G56670.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 3.94e-30 | 101 |
| Msa0749100 | AT4G29390.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 3.94e-30 | 101 |
Find 30 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTATTGTGGACTAGGGTT+AGG | 0.265232 | 5_2:-2459951 | None:intergenic |
| GAGCTTTAACGAAAATAGTT+TGG | 0.335033 | 5_2:-2459984 | None:intergenic |
| GCTTTGCTACCTTTGGTGTT+TGG | 0.335294 | 5_2:-2460245 | None:intergenic |
| TGCTATTTGTATTGTGGACT+AGG | 0.346479 | 5_2:-2459957 | None:intergenic |
| TTTCGTTAAAGCTCCGATTC+TGG | 0.348037 | 5_2:+2459993 | Msa0749100:five_prime_UTR |
| TTGTCTTGCTTTGCTACCTT+TGG | 0.348505 | 5_2:-2460252 | None:intergenic |
| TGTTTGGCCTCTAACCTTAC+CGG | 0.358772 | 5_2:-2460229 | None:intergenic |
| TCTTACTTCTCAGATGAGTT+TGG | 0.367396 | 5_2:-2460466 | None:intergenic |
| TGTATTGTGGACTAGGGTTA+GGG | 0.371742 | 5_2:-2459950 | None:intergenic |
| GTTACTGTAGTTGTTGGATT+CGG | 0.419179 | 5_2:+2460430 | Msa0749100:intron |
| GCCTCTAACCTTACCGGCAC+GGG | 0.419662 | 5_2:-2460223 | None:intergenic |
| ATCGTTGGCCCGTGCCGGTA+AGG | 0.433030 | 5_2:+2460215 | Msa0749100:CDS |
| GCCCGTGCCGGTAAGGTTAG+AGG | 0.445776 | 5_2:+2460222 | Msa0749100:CDS |
| ACGCTTGTGAGCACGGCCAC+GGG | 0.451262 | 5_2:-2460286 | None:intergenic |
| CACGGATCGTTGGCCCGTGC+CGG | 0.457604 | 5_2:+2460210 | Msa0749100:CDS |
| TACGCTTGTGAGCACGGCCA+CGG | 0.461093 | 5_2:-2460287 | None:intergenic |
| GCTATTTGTATTGTGGACTA+GGG | 0.472642 | 5_2:-2459956 | None:intergenic |
| CTCTCTCTCTTTAGCTTCTG+CGG | 0.475217 | 5_2:-2460028 | None:intergenic |
| GCTTGAGGCAAAACCAGAAT+CGG | 0.497884 | 5_2:-2460006 | None:intergenic |
| GGCCTCTAACCTTACCGGCA+CGG | 0.499402 | 5_2:-2460224 | None:intergenic |
| TCTTTAGCTTCTGCGGCTTG+AGG | 0.529758 | 5_2:-2460021 | None:intergenic |
| ACTGCATACGCTTGTGAGCA+CGG | 0.575185 | 5_2:-2460293 | None:intergenic |
| CGCTTGTGAGCACGGCCACG+GGG | 0.579942 | 5_2:-2460285 | None:intergenic |
| AGGAAAGGTTCACGGATCGT+TGG | 0.583409 | 5_2:+2460200 | Msa0749100:intron |
| TACCGGCAGTGACGAATCTG+CGG | 0.585546 | 5_2:-2460320 | None:intergenic |
| AACCGCAGATTCGTCACTGC+CGG | 0.593013 | 5_2:+2460318 | Msa0749100:CDS |
| GTTGGATTCGGTAAGAAGAG+AGG | 0.609691 | 5_2:+2460442 | Msa0749100:CDS |
| GGTTAGAGGCCAAACACCAA+AGG | 0.645954 | 5_2:+2460236 | Msa0749100:CDS |
| GACAAGAAGAAGCAGCCCCG+TGG | 0.665991 | 5_2:+2460270 | Msa0749100:CDS |
| TCAAAGTCTAGACTGAGATG+TGG | 0.681962 | 5_2:-2461038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAAATCTAAAAAATTA+GGG | - | chr5_2:2460357-2460376 | None:intergenic | 10.0% |
| !! | ATGAATAAATCTAAAAAATT+AGG | - | chr5_2:2460358-2460377 | None:intergenic | 10.0% |
| !! | TGAATAAATCTAAAAAATTA+GGG | - | chr5_2:2460357-2460376 | None:intergenic | 10.0% |
| !! | ATGAATAAATCTAAAAAATT+AGG | - | chr5_2:2460358-2460377 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTCTTTCAATCA+TGG | + | chr5_2:2460082-2460101 | Msa0749100:exon | 15.0% |
| !!! | TTTTTTTTTCTTTCAATCAT+GGG | + | chr5_2:2460083-2460102 | Msa0749100:exon | 15.0% |
| !! | TAACATATTTCAAAAACTAA+GGG | - | chr5_2:2460518-2460537 | None:intergenic | 15.0% |
| !! | TTAACATATTTCAAAAACTA+AGG | - | chr5_2:2460519-2460538 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCTTTCAATCA+TGG | + | chr5_2:2460082-2460101 | Msa0749100:exon | 15.0% |
| !!! | TTTTTTTTTCTTTCAATCAT+GGG | + | chr5_2:2460083-2460102 | Msa0749100:exon | 15.0% |
| !! | TAACATATTTCAAAAACTAA+GGG | - | chr5_2:2460518-2460537 | None:intergenic | 15.0% |
| !! | TTAACATATTTCAAAAACTA+AGG | - | chr5_2:2460519-2460538 | None:intergenic | 15.0% |
| !! | AACATATTTCAAAAACTAAG+GGG | - | chr5_2:2460517-2460536 | None:intergenic | 20.0% |
| !!! | ATTTTCCTCCTTTTTTTTTT+TGG | + | chr5_2:2460558-2460577 | Msa0749100:intron | 20.0% |
| !!! | TTTTCCTCCTTTTTTTTTTT+GGG | + | chr5_2:2460559-2460578 | Msa0749100:intron | 20.0% |
| !! | ACTAAATCCCAAAAAAAAAA+AGG | - | chr5_2:2460569-2460588 | None:intergenic | 20.0% |
| !! | ATATTTAACTAGCACAAAAA+AGG | - | chr5_2:2460613-2460632 | None:intergenic | 20.0% |
| !!! | TTTTGCTATGTATTAAGATT+AGG | + | chr5_2:2460805-2460824 | Msa0749100:intron | 20.0% |
| !! | AACATATTTCAAAAACTAAG+GGG | - | chr5_2:2460517-2460536 | None:intergenic | 20.0% |
| !!! | ATTTTCCTCCTTTTTTTTTT+TGG | + | chr5_2:2460558-2460577 | Msa0749100:intron | 20.0% |
| !!! | TTTTCCTCCTTTTTTTTTTT+GGG | + | chr5_2:2460559-2460578 | Msa0749100:intron | 20.0% |
| !! | ACTAAATCCCAAAAAAAAAA+AGG | - | chr5_2:2460569-2460588 | None:intergenic | 20.0% |
| !! | ATATTTAACTAGCACAAAAA+AGG | - | chr5_2:2460613-2460632 | None:intergenic | 20.0% |
| !!! | TTTTGCTATGTATTAAGATT+AGG | + | chr5_2:2460805-2460824 | Msa0749100:intron | 20.0% |
| ! | AAATCCCAAAAAAAAAAAGG+AGG | - | chr5_2:2460566-2460585 | None:intergenic | 25.0% |
| ! | TTATATCTGCTGAATAATTG+TGG | + | chr5_2:2460719-2460738 | Msa0749100:intron | 25.0% |
| ! | TGTATTAAGATTAGGATGAA+TGG | + | chr5_2:2460813-2460832 | Msa0749100:intron | 25.0% |
| ! | AAATCCCAAAAAAAAAAAGG+AGG | - | chr5_2:2460566-2460585 | None:intergenic | 25.0% |
| ! | TTATATCTGCTGAATAATTG+TGG | + | chr5_2:2460719-2460738 | Msa0749100:intron | 25.0% |
| ! | TGTATTAAGATTAGGATGAA+TGG | + | chr5_2:2460813-2460832 | Msa0749100:intron | 25.0% |
| !!! | GGTTTTTGCTATTTGTATTG+TGG | - | chr5_2:2459966-2459985 | None:intergenic | 30.0% |
| ! | GAGCTTTAACGAAAATAGTT+TGG | - | chr5_2:2459987-2460006 | None:intergenic | 30.0% |
| !! | AACAATGAAATCGATTTTGC+AGG | + | chr5_2:2460180-2460199 | Msa0749100:intron | 30.0% |
| TCTAAAAAATTAGGGTTTCG+AGG | - | chr5_2:2460349-2460368 | None:intergenic | 30.0% | |
| ATTCTTGTTACTGTAGTTGT+TGG | + | chr5_2:2460424-2460443 | Msa0749100:intron | 30.0% | |
| AACTAAAGCCTAATTTCTCA+GGG | - | chr5_2:2460680-2460699 | None:intergenic | 30.0% | |
| TAACTAAAGCCTAATTTCTC+AGG | - | chr5_2:2460681-2460700 | None:intergenic | 30.0% | |
| !!! | ATGAATGGTTTTATCCATCA+CGG | + | chr5_2:2460828-2460847 | Msa0749100:intron | 30.0% |
| TACTTTGTGTTCATATAGAC+TGG | + | chr5_2:2460872-2460891 | Msa0749100:intron | 30.0% | |
| ! | GGACATATGATATGAGTTTT+TGG | + | chr5_2:2460788-2460807 | Msa0749100:intron | 30.0% |
| !!! | GGTTTTTGCTATTTGTATTG+TGG | - | chr5_2:2459966-2459985 | None:intergenic | 30.0% |
| ! | GAGCTTTAACGAAAATAGTT+TGG | - | chr5_2:2459987-2460006 | None:intergenic | 30.0% |
| !! | AACAATGAAATCGATTTTGC+AGG | + | chr5_2:2460180-2460199 | Msa0749100:intron | 30.0% |
| TCTAAAAAATTAGGGTTTCG+AGG | - | chr5_2:2460349-2460368 | None:intergenic | 30.0% | |
| ATTCTTGTTACTGTAGTTGT+TGG | + | chr5_2:2460424-2460443 | Msa0749100:intron | 30.0% | |
| AACTAAAGCCTAATTTCTCA+GGG | - | chr5_2:2460680-2460699 | None:intergenic | 30.0% | |
| TAACTAAAGCCTAATTTCTC+AGG | - | chr5_2:2460681-2460700 | None:intergenic | 30.0% | |
| !!! | ATGAATGGTTTTATCCATCA+CGG | + | chr5_2:2460828-2460847 | Msa0749100:intron | 30.0% |
| TACTTTGTGTTCATATAGAC+TGG | + | chr5_2:2460872-2460891 | Msa0749100:intron | 30.0% | |
| ! | GGACATATGATATGAGTTTT+TGG | + | chr5_2:2460788-2460807 | Msa0749100:intron | 30.0% |
| ! | GCTATTTGTATTGTGGACTA+GGG | - | chr5_2:2459959-2459978 | None:intergenic | 35.0% |
| ! | TGCTATTTGTATTGTGGACT+AGG | - | chr5_2:2459960-2459979 | None:intergenic | 35.0% |
| !! | TGAAATCGATTTTGCAGGAA+AGG | + | chr5_2:2460185-2460204 | Msa0749100:intron | 35.0% |
| GTTACTGTAGTTGTTGGATT+CGG | + | chr5_2:2460430-2460449 | Msa0749100:intron | 35.0% | |
| TCTTACTTCTCAGATGAGTT+TGG | - | chr5_2:2460469-2460488 | None:intergenic | 35.0% | |
| ! | GTCTTATTCCCTGAGAAATT+AGG | + | chr5_2:2460669-2460688 | Msa0749100:intron | 35.0% |
| TAATTGTGGTGCGAATTGTA+TGG | + | chr5_2:2460733-2460752 | Msa0749100:intron | 35.0% | |
| CATCACGGAACATATATGAT+GGG | + | chr5_2:2460843-2460862 | Msa0749100:intron | 35.0% | |
| !!! | GATATGAGTTTTTGGCGAAT+AGG | + | chr5_2:2460901-2460920 | Msa0749100:intron | 35.0% |
| !!! | AGTTCTGTTTTGTTTCCTGT+AGG | + | chr5_2:2460987-2461006 | Msa0749100:intron | 35.0% |
| ! | GCTATTTGTATTGTGGACTA+GGG | - | chr5_2:2459959-2459978 | None:intergenic | 35.0% |
| ! | TGCTATTTGTATTGTGGACT+AGG | - | chr5_2:2459960-2459979 | None:intergenic | 35.0% |
| !! | TGAAATCGATTTTGCAGGAA+AGG | + | chr5_2:2460185-2460204 | Msa0749100:intron | 35.0% |
| GTTACTGTAGTTGTTGGATT+CGG | + | chr5_2:2460430-2460449 | Msa0749100:intron | 35.0% | |
| TCTTACTTCTCAGATGAGTT+TGG | - | chr5_2:2460469-2460488 | None:intergenic | 35.0% | |
| ! | GTCTTATTCCCTGAGAAATT+AGG | + | chr5_2:2460669-2460688 | Msa0749100:intron | 35.0% |
| TAATTGTGGTGCGAATTGTA+TGG | + | chr5_2:2460733-2460752 | Msa0749100:intron | 35.0% | |
| CATCACGGAACATATATGAT+GGG | + | chr5_2:2460843-2460862 | Msa0749100:intron | 35.0% | |
| !!! | GATATGAGTTTTTGGCGAAT+AGG | + | chr5_2:2460901-2460920 | Msa0749100:intron | 35.0% |
| !!! | AGTTCTGTTTTGTTTCCTGT+AGG | + | chr5_2:2460987-2461006 | Msa0749100:intron | 35.0% |
| !! | TGTATTGTGGACTAGGGTTA+GGG | - | chr5_2:2459953-2459972 | None:intergenic | 40.0% |
| !! | TTGTATTGTGGACTAGGGTT+AGG | - | chr5_2:2459954-2459973 | None:intergenic | 40.0% |
| TTTCGTTAAAGCTCCGATTC+TGG | + | chr5_2:2459993-2460012 | Msa0749100:five_prime_UTR | 40.0% | |
| ! | GATTTTGCAGGAAAGGTTCA+CGG | + | chr5_2:2460192-2460211 | Msa0749100:intron | 40.0% |
| TTGTCTTGCTTTGCTACCTT+TGG | - | chr5_2:2460255-2460274 | None:intergenic | 40.0% | |
| ! | TTAGGGTTTCGAGGTATTAC+CGG | - | chr5_2:2460340-2460359 | None:intergenic | 40.0% |
| TCATCTGAGAAGTAAGATCG+TGG | + | chr5_2:2460472-2460491 | Msa0749100:intron | 40.0% | |
| TGCGAATTGTATGGTAGAAG+TGG | + | chr5_2:2460742-2460761 | Msa0749100:intron | 40.0% | |
| ACAGACGTATGTCTATAGAC+TGG | + | chr5_2:2460767-2460786 | Msa0749100:intron | 40.0% | |
| CCATCATATATGTTCCGTGA+TGG | - | chr5_2:2460845-2460864 | None:intergenic | 40.0% | |
| CCATCACGGAACATATATGA+TGG | + | chr5_2:2460842-2460861 | Msa0749100:intron | 40.0% | |
| TCAAAGTCTAGACTGAGATG+TGG | - | chr5_2:2461041-2461060 | None:intergenic | 40.0% | |
| !! | TGTATTGTGGACTAGGGTTA+GGG | - | chr5_2:2459953-2459972 | None:intergenic | 40.0% |
| !! | TTGTATTGTGGACTAGGGTT+AGG | - | chr5_2:2459954-2459973 | None:intergenic | 40.0% |
| TTTCGTTAAAGCTCCGATTC+TGG | + | chr5_2:2459993-2460012 | Msa0749100:five_prime_UTR | 40.0% | |
| ! | GATTTTGCAGGAAAGGTTCA+CGG | + | chr5_2:2460192-2460211 | Msa0749100:intron | 40.0% |
| TTGTCTTGCTTTGCTACCTT+TGG | - | chr5_2:2460255-2460274 | None:intergenic | 40.0% | |
| ! | TTAGGGTTTCGAGGTATTAC+CGG | - | chr5_2:2460340-2460359 | None:intergenic | 40.0% |
| TCATCTGAGAAGTAAGATCG+TGG | + | chr5_2:2460472-2460491 | Msa0749100:intron | 40.0% | |
| TGCGAATTGTATGGTAGAAG+TGG | + | chr5_2:2460742-2460761 | Msa0749100:intron | 40.0% | |
| ACAGACGTATGTCTATAGAC+TGG | + | chr5_2:2460767-2460786 | Msa0749100:intron | 40.0% | |
| CCATCATATATGTTCCGTGA+TGG | - | chr5_2:2460845-2460864 | None:intergenic | 40.0% | |
| CCATCACGGAACATATATGA+TGG | + | chr5_2:2460842-2460861 | Msa0749100:intron | 40.0% | |
| TCAAAGTCTAGACTGAGATG+TGG | - | chr5_2:2461041-2461060 | None:intergenic | 40.0% | |
| GCTTGAGGCAAAACCAGAAT+CGG | - | chr5_2:2460009-2460028 | None:intergenic | 45.0% | |
| ! | CTCTCTCTCTTTAGCTTCTG+CGG | - | chr5_2:2460031-2460050 | None:intergenic | 45.0% |
| TGTTTGGCCTCTAACCTTAC+CGG | - | chr5_2:2460232-2460251 | None:intergenic | 45.0% | |
| !! | GCTTTGCTACCTTTGGTGTT+TGG | - | chr5_2:2460248-2460267 | None:intergenic | 45.0% |
| ! | GTTGGATTCGGTAAGAAGAG+AGG | + | chr5_2:2460442-2460461 | Msa0749100:CDS | 45.0% |
| GCTTGAGGCAAAACCAGAAT+CGG | - | chr5_2:2460009-2460028 | None:intergenic | 45.0% | |
| ! | CTCTCTCTCTTTAGCTTCTG+CGG | - | chr5_2:2460031-2460050 | None:intergenic | 45.0% |
| TGTTTGGCCTCTAACCTTAC+CGG | - | chr5_2:2460232-2460251 | None:intergenic | 45.0% | |
| !! | GCTTTGCTACCTTTGGTGTT+TGG | - | chr5_2:2460248-2460267 | None:intergenic | 45.0% |
| ! | GTTGGATTCGGTAAGAAGAG+AGG | + | chr5_2:2460442-2460461 | Msa0749100:CDS | 45.0% |
| ! | TCTTTAGCTTCTGCGGCTTG+AGG | - | chr5_2:2460024-2460043 | None:intergenic | 50.0% |
| AGGAAAGGTTCACGGATCGT+TGG | + | chr5_2:2460200-2460219 | Msa0749100:intron | 50.0% | |
| GGTTAGAGGCCAAACACCAA+AGG | + | chr5_2:2460236-2460255 | Msa0749100:CDS | 50.0% | |
| ACTGCATACGCTTGTGAGCA+CGG | - | chr5_2:2460296-2460315 | None:intergenic | 50.0% | |
| CATTTACCCATAGACGCAGG+CGG | - | chr5_2:2460939-2460958 | None:intergenic | 50.0% | |
| GCACATTTACCCATAGACGC+AGG | - | chr5_2:2460942-2460961 | None:intergenic | 50.0% | |
| TTTGCAGTCAGTGAGCCTAC+AGG | - | chr5_2:2461005-2461024 | None:intergenic | 50.0% | |
| ! | TCTTTAGCTTCTGCGGCTTG+AGG | - | chr5_2:2460024-2460043 | None:intergenic | 50.0% |
| AGGAAAGGTTCACGGATCGT+TGG | + | chr5_2:2460200-2460219 | Msa0749100:intron | 50.0% | |
| GGTTAGAGGCCAAACACCAA+AGG | + | chr5_2:2460236-2460255 | Msa0749100:CDS | 50.0% | |
| ACTGCATACGCTTGTGAGCA+CGG | - | chr5_2:2460296-2460315 | None:intergenic | 50.0% | |
| CATTTACCCATAGACGCAGG+CGG | - | chr5_2:2460939-2460958 | None:intergenic | 50.0% | |
| GCACATTTACCCATAGACGC+AGG | - | chr5_2:2460942-2460961 | None:intergenic | 50.0% | |
| TTTGCAGTCAGTGAGCCTAC+AGG | - | chr5_2:2461005-2461024 | None:intergenic | 50.0% | |
| AACCGCAGATTCGTCACTGC+CGG | + | chr5_2:2460318-2460337 | Msa0749100:CDS | 55.0% | |
| TACCGGCAGTGACGAATCTG+CGG | - | chr5_2:2460323-2460342 | None:intergenic | 55.0% | |
| TTTACCACCGCCTGCGTCTA+TGG | + | chr5_2:2460929-2460948 | Msa0749100:intron | 55.0% | |
| TTACCACCGCCTGCGTCTAT+GGG | + | chr5_2:2460930-2460949 | Msa0749100:intron | 55.0% | |
| AACCGCAGATTCGTCACTGC+CGG | + | chr5_2:2460318-2460337 | Msa0749100:CDS | 55.0% | |
| TACCGGCAGTGACGAATCTG+CGG | - | chr5_2:2460323-2460342 | None:intergenic | 55.0% | |
| TTTACCACCGCCTGCGTCTA+TGG | + | chr5_2:2460929-2460948 | Msa0749100:intron | 55.0% | |
| TTACCACCGCCTGCGTCTAT+GGG | + | chr5_2:2460930-2460949 | Msa0749100:intron | 55.0% | |
| GCCTCTAACCTTACCGGCAC+GGG | - | chr5_2:2460226-2460245 | None:intergenic | 60.0% | |
| GGCCTCTAACCTTACCGGCA+CGG | - | chr5_2:2460227-2460246 | None:intergenic | 60.0% | |
| GACAAGAAGAAGCAGCCCCG+TGG | + | chr5_2:2460270-2460289 | Msa0749100:CDS | 60.0% | |
| TACGCTTGTGAGCACGGCCA+CGG | - | chr5_2:2460290-2460309 | None:intergenic | 60.0% | |
| TTACCCATAGACGCAGGCGG+TGG | - | chr5_2:2460936-2460955 | None:intergenic | 60.0% | |
| GCCTCTAACCTTACCGGCAC+GGG | - | chr5_2:2460226-2460245 | None:intergenic | 60.0% | |
| GGCCTCTAACCTTACCGGCA+CGG | - | chr5_2:2460227-2460246 | None:intergenic | 60.0% | |
| GACAAGAAGAAGCAGCCCCG+TGG | + | chr5_2:2460270-2460289 | Msa0749100:CDS | 60.0% | |
| TACGCTTGTGAGCACGGCCA+CGG | - | chr5_2:2460290-2460309 | None:intergenic | 60.0% | |
| TTACCCATAGACGCAGGCGG+TGG | - | chr5_2:2460936-2460955 | None:intergenic | 60.0% | |
| ! | ATCGTTGGCCCGTGCCGGTA+AGG | + | chr5_2:2460215-2460234 | Msa0749100:CDS | 65.0% |
| ! | GCCCGTGCCGGTAAGGTTAG+AGG | + | chr5_2:2460222-2460241 | Msa0749100:CDS | 65.0% |
| ACGCTTGTGAGCACGGCCAC+GGG | - | chr5_2:2460289-2460308 | None:intergenic | 65.0% | |
| ! | ATCGTTGGCCCGTGCCGGTA+AGG | + | chr5_2:2460215-2460234 | Msa0749100:CDS | 65.0% |
| ! | GCCCGTGCCGGTAAGGTTAG+AGG | + | chr5_2:2460222-2460241 | Msa0749100:CDS | 65.0% |
| ACGCTTGTGAGCACGGCCAC+GGG | - | chr5_2:2460289-2460308 | None:intergenic | 65.0% | |
| CACGGATCGTTGGCCCGTGC+CGG | + | chr5_2:2460210-2460229 | Msa0749100:CDS | 70.0% | |
| CGCTTGTGAGCACGGCCACG+GGG | - | chr5_2:2460288-2460307 | None:intergenic | 70.0% | |
| CACGGATCGTTGGCCCGTGC+CGG | + | chr5_2:2460210-2460229 | Msa0749100:CDS | 70.0% | |
| CGCTTGTGAGCACGGCCACG+GGG | - | chr5_2:2460288-2460307 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 2459944 | 2461060 | 2459944 | ID=Msa0749100;Name=Msa0749100 |
| chr5_2 | mRNA | 2459944 | 2461060 | 2459944 | ID=Msa0749100-mRNA-1;Parent=Msa0749100;Name=Msa0749100-mRNA-1;_AED=0.30;_eAED=0.30;_QI=157|0.66|0.5|0.75|1|1|4|0|78 |
| chr5_2 | exon | 2459944 | 2460104 | 2459944 | ID=Msa0749100-mRNA-1:exon:762;Parent=Msa0749100-mRNA-1 |
| chr5_2 | exon | 2460202 | 2460339 | 2460202 | ID=Msa0749100-mRNA-1:exon:763;Parent=Msa0749100-mRNA-1 |
| chr5_2 | exon | 2460440 | 2460482 | 2460440 | ID=Msa0749100-mRNA-1:exon:764;Parent=Msa0749100-mRNA-1 |
| chr5_2 | exon | 2461009 | 2461060 | 2461009 | ID=Msa0749100-mRNA-1:exon:765;Parent=Msa0749100-mRNA-1 |
| chr5_2 | five_prime_UTR | 2459944 | 2460100 | 2459944 | ID=Msa0749100-mRNA-1:five_prime_utr;Parent=Msa0749100-mRNA-1 |
| chr5_2 | CDS | 2460101 | 2460104 | 2460101 | ID=Msa0749100-mRNA-1:cds;Parent=Msa0749100-mRNA-1 |
| chr5_2 | CDS | 2460202 | 2460339 | 2460202 | ID=Msa0749100-mRNA-1:cds;Parent=Msa0749100-mRNA-1 |
| chr5_2 | CDS | 2460440 | 2460482 | 2460440 | ID=Msa0749100-mRNA-1:cds;Parent=Msa0749100-mRNA-1 |
| chr5_2 | CDS | 2461009 | 2461060 | 2461009 | ID=Msa0749100-mRNA-1:cds;Parent=Msa0749100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
