AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750860 MtrunA17_Chr5g0395291 97.481 397 9 1 40 436 1 396 0.0 805
Msa0750860 MtrunA17_Chr8g0389421 32.227 211 130 3 235 435 42 249 8.44e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750860 AT5G42390.2 77.778 306 59 4 135 436 100 400 1.34e-161 484
Msa0750860 AT5G42390.1 77.778 306 59 4 135 436 100 400 4.28e-160 484
Msa0750860 AT5G56730.1 29.075 227 147 4 218 434 27 249 5.33e-22 99.8
Msa0750860 AT3G02090.1 32.484 157 90 4 228 378 93 239 3.35e-11 65.5
Msa0750860 AT3G02090.2 32.484 157 90 4 228 378 93 239 3.89e-11 65.5

Find 93 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGTTGGTGGAACTTTATT+TGG 0.204443 5_2:-4431990 None:intergenic
TCAATCTGGCTAACAGTCTT+TGG 0.220622 5_2:-4434210 None:intergenic
CTTGCGGCGTGTGGCTCATC+TGG 0.300514 5_2:-4431813 None:intergenic
TGATCTCCTTCCATCTGTTC+TGG 0.315346 5_2:+4433585 Msa0750860:CDS
AAATAAATAGTACCTCGTTC+AGG 0.357379 5_2:-4433612 None:intergenic
ATCTGTTCTTCTAATCCAAT+TGG 0.362403 5_2:-4434090 None:intergenic
AGAGTTATTCATGGCGGATT+AGG 0.365568 5_2:+4430696 Msa0750860:CDS
AGTCTTGCCAGATTTGTTCC+TGG 0.375851 5_2:+4430843 Msa0750860:CDS
GACGGAATAAACCAGATGTT+TGG 0.388098 5_2:+4430724 Msa0750860:CDS
GAATAGTGTTTCCAAACATC+TGG 0.390897 5_2:-4430735 None:intergenic
CAATCTGGCTAACAGTCTTT+GGG 0.391293 5_2:-4434209 None:intergenic
AGCAAGAGGCACAACTTTGC+TGG 0.394383 5_2:-4430791 None:intergenic
AGTGAAAGAAGAGTTATTCA+TGG 0.398063 5_2:+4430687 Msa0750860:intron
ATATTTGACATACTTCAATC+TGG 0.402392 5_2:-4434224 None:intergenic
ATCCTAGATGAAAGGAACTT+TGG 0.410743 5_2:-4433848 None:intergenic
ACTCGAACGACGTTTCTTTG+TGG 0.418295 5_2:-4430823 None:intergenic
ATGTACAAAGTAGCATTTGC+AGG 0.420127 5_2:-4434165 None:intergenic
AAAAGCTCCAGGAACAAATC+TGG 0.423512 5_2:-4430850 None:intergenic
TGCTGGAACGGTGCCGCCGC+CGG 0.425729 5_2:-4430774 None:intergenic
CACACGCCGCAAGCACAGCT+TGG 0.427484 5_2:+4431823 Msa0750860:CDS
CTGAGCAAAAGGTTTCCAAT+TGG 0.428095 5_2:+4434075 Msa0750860:CDS
AAGTTTGTTTGATTCTGAAC+TGG 0.428739 5_2:+4431875 Msa0750860:CDS
ATCCAAAGTTCCTTTCATCT+AGG 0.443590 5_2:+4433846 Msa0750860:CDS
AGTTGACCTCTATGCAACTT+GGG 0.447384 5_2:-4431939 None:intergenic
TAGAAGAACAGATAAAGAAG+TGG 0.451137 5_2:+4434100 Msa0750860:CDS
AAGAAGAAGATAAGAAGAAA+CGG 0.453755 5_2:-4430487 None:intergenic
CATAGAGGTCAACTAAAGAA+TGG 0.455806 5_2:+4431948 Msa0750860:CDS
CAAGCTGTGCTTGCGGCGTG+TGG 0.457895 5_2:-4431822 None:intergenic
CTGAAAACAAGCTGAGCAAA+AGG 0.459642 5_2:+4434064 Msa0750860:CDS
TAGTTGACCTCTATGCAACT+TGG 0.469429 5_2:-4431940 None:intergenic
ATTTATTGAGCTCACCTAGT+TGG 0.470410 5_2:-4432005 None:intergenic
AATAAATAGTACCTCGTTCA+GGG 0.483291 5_2:-4433611 None:intergenic
CATCGTTATGCATATGCCTA+TGG 0.483897 5_2:+4430349 Msa0750860:CDS
TTCTTCGCTGCTTTCTCCAC+CGG 0.491989 5_2:+4430755 Msa0750860:CDS
AGATAGATTAGTGAGAGAAG+AGG 0.494471 5_2:-4430390 None:intergenic
TATTGAGCTCACCTAGTTGG+TGG 0.495075 5_2:-4432002 None:intergenic
GCAAGCACAGCTTGGCCCGA+TGG 0.496641 5_2:+4431831 Msa0750860:CDS
CTATGCAACTTGGGGTGAGA+TGG 0.506548 5_2:-4431930 None:intergenic
AAATGCTACTTTGTACATTG+TGG 0.518304 5_2:+4434170 Msa0750860:CDS
AATGCTACTTTGTACATTGT+GGG 0.519686 5_2:+4434171 Msa0750860:CDS
AGAAGAACAGATAAAGAAGT+GGG 0.521288 5_2:+4434101 Msa0750860:CDS
TAAGAAAATTTCACGAGCGT+TGG 0.527913 5_2:+4434136 Msa0750860:CDS
ATAGAGGTCAACTAAAGAAT+GGG 0.531653 5_2:+4431949 Msa0750860:CDS
GAGGCACAACTTTGCTGGAA+CGG 0.536343 5_2:-4430786 None:intergenic
TGAAAGGAACTTTGGATGGA+AGG 0.538444 5_2:-4433840 None:intergenic
CAAATAAAGTTCCACCAACT+AGG 0.545112 5_2:+4431991 Msa0750860:CDS
GCTGCTTTCTCCACCGGCGG+CGG 0.545487 5_2:+4430761 Msa0750860:CDS
TGGAGATTGAAGAGGGAGAG+TGG 0.545527 5_2:-4430448 None:intergenic
TAGATGAAAGGAACTTTGGA+TGG 0.545911 5_2:-4433844 None:intergenic
TGTTTGATTCTGAACTGGAA+AGG 0.548532 5_2:+4431880 Msa0750860:CDS
GTTGAAGTTGAAGCAGCCAT+AGG 0.549396 5_2:-4430365 None:intergenic
TTCAGGGCATCCAGAACAGA+TGG 0.549882 5_2:-4433595 None:intergenic
ATAAGAAGAAACGGTTGGAA+CGG 0.555436 5_2:-4430478 None:intergenic
GATGAAGAGGATGATGAGCA+AGG 0.556827 5_2:+4432683 Msa0750860:CDS
AGAGTATCGAGTTGATTGCC+AGG 0.558108 5_2:+4433922 Msa0750860:CDS
AGAAGATAAGAAGAAACGGT+TGG 0.558900 5_2:-4430483 None:intergenic
ATCGGGCCAAGCTGTGCTTG+CGG 0.562924 5_2:-4431829 None:intergenic
CCTTGGTAGTGGTAGGAGCA+TGG 0.564021 5_2:-4432823 None:intergenic
GAGTGCGAAGGTGAAGAAGC+TGG 0.568452 5_2:+4430305 Msa0750860:CDS
TCTGAACTGGAAAGGCTAGA+GGG 0.569040 5_2:+4431888 Msa0750860:CDS
ATGCTACTTTGTACATTGTG+GGG 0.570695 5_2:+4434172 Msa0750860:CDS
TCTCTTTCTCTTCTCCTCAA+CGG 0.572155 5_2:+4430513 Msa0750860:CDS
TGGAACGGTGCCGCCGCCGG+TGG 0.573638 5_2:-4430771 None:intergenic
CAAGTTCCACATGCAACTGT+TGG 0.574898 5_2:+4431789 Msa0750860:CDS
ATCTGTATAAGCATTTGAGC+GGG 0.579721 5_2:-4432777 None:intergenic
TGCTGGATCGATAGATGAAG+AGG 0.581607 5_2:+4432670 Msa0750860:CDS
GTTGACCTCTATGCAACTTG+GGG 0.585763 5_2:-4431938 None:intergenic
GCACACATGGAAGTTCATGC+TGG 0.587346 5_2:+4432653 Msa0750860:CDS
AATGGTCCAAACCTTGGTAG+TGG 0.587681 5_2:-4432834 None:intergenic
TTCTGAACTGGAAAGGCTAG+AGG 0.596519 5_2:+4431887 Msa0750860:CDS
CATGGATGTGAAACACTGTA+TGG 0.598973 5_2:-4432805 None:intergenic
CTGAACTGGAAAGGCTAGAG+GGG 0.602586 5_2:+4431889 Msa0750860:CDS
TCTAAGGATAAGCTTCGTCA+TGG 0.603518 5_2:+4430897 Msa0750860:CDS
AATCAAGAGGTTGAGTGCGA+AGG 0.603529 5_2:+4430293 Msa0750860:CDS
TGTGGAAGCAAGACAGCAAG+AGG 0.605809 5_2:-4430805 None:intergenic
TGCTACTTTGTACATTGTGG+GGG 0.606858 5_2:+4434173 Msa0750860:CDS
TTCGCTGCTTTCTCCACCGG+CGG 0.607765 5_2:+4430758 Msa0750860:CDS
TGTACAAAGTAGCATTTGCA+GGG 0.617045 5_2:-4434164 None:intergenic
AATCGAGTGGAGATTGAAGA+GGG 0.619330 5_2:-4430455 None:intergenic
GAGAGTAATAAGTACCGTTG+AGG 0.622644 5_2:-4430527 None:intergenic
GAATCGAGTGGAGATTGAAG+AGG 0.629352 5_2:-4430456 None:intergenic
AGATTGAAGAGGGAGAGTGG+CGG 0.634432 5_2:-4430445 None:intergenic
GGGCATCCAGAACAGATGGA+AGG 0.639515 5_2:-4433591 None:intergenic
ACGGTTGGAACGGAATCGAG+TGG 0.644663 5_2:-4430468 None:intergenic
TCTCACCCCAAGTTGCATAG+AGG 0.644862 5_2:+4431933 Msa0750860:CDS
AATCTGTATAAGCATTTGAG+CGG 0.651909 5_2:-4432778 None:intergenic
ATGGCGGATTAGGTTTACGA+CGG 0.662827 5_2:+4430706 Msa0750860:CDS
TCTGGACCAACAGTTGCATG+TGG 0.667090 5_2:-4431795 None:intergenic
TGTTCTGGATGCCCTGAACG+AGG 0.675029 5_2:+4433600 Msa0750860:CDS
CCATGCTCCTACCACTACCA+AGG 0.675098 5_2:+4432823 Msa0750860:CDS
GTCCAAACCTTGGTAGTGGT+AGG 0.675270 5_2:-4432830 None:intergenic
GGATGTGAAACACTGTATGG+TGG 0.682829 5_2:-4432802 None:intergenic
GAAAGAAGAGTTATTCATGG+CGG 0.736930 5_2:+4430690 Msa0750860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATAATAGCTATTTTTTA+CGG + chr5_2:4430949-4430968 Msa0750860:intron 15.0%
!!! TTTTTATTTTGATTGCATTT+AGG + chr5_2:4431702-4431721 Msa0750860:intron 15.0%
!!! ATGATATTTCAATCATTTTT+TGG + chr5_2:4432103-4432122 Msa0750860:intron 15.0%
!! TATGAATTTGATCATTAAAA+GGG - chr5_2:4432207-4432226 None:intergenic 15.0%
!! TTATGAATTTGATCATTAAA+AGG - chr5_2:4432208-4432227 None:intergenic 15.0%
!!! TGTAATTGTTCATTTTAAAA+AGG - chr5_2:4432482-4432501 None:intergenic 15.0%
!! AACTAAAAGCAAATTAAATA+GGG - chr5_2:4434012-4434031 None:intergenic 15.0%
!! AAACTAAAAGCAAATTAAAT+AGG - chr5_2:4434013-4434032 None:intergenic 15.0%
!!! TTTTTTGATAACTCTTCTTT+TGG + chr5_2:4430870-4430889 Msa0750860:CDS 20.0%
!!! TTTATTTATGTTGAAGCTTT+TGG + chr5_2:4431107-4431126 Msa0750860:intron 20.0%
!!! TATTCAAATATGTTTTTCGT+TGG + chr5_2:4431489-4431508 Msa0750860:intron 20.0%
!!! TCACTTTGTTTGTAATTTTA+TGG - chr5_2:4431525-4431544 None:intergenic 20.0%
!! AAAATTGAAAACTTAAACAC+AGG - chr5_2:4431684-4431703 None:intergenic 20.0%
!!! AACTATAATTTTTCCTTTCA+TGG - chr5_2:4433220-4433239 None:intergenic 20.0%
!! TGTTAATTTCTTACAAATTG+AGG - chr5_2:4433327-4433346 None:intergenic 20.0%
!! GTATATACAAAAAAAAATGC+AGG - chr5_2:4433490-4433509 None:intergenic 20.0%
!! ACTAAAAGCAAATTAAATAG+GGG - chr5_2:4434011-4434030 None:intergenic 20.0%
! AAATCATCAGAAAAATCAAG+AGG + chr5_2:4430280-4430299 Msa0750860:CDS 25.0%
! AAGAAGAAGATAAGAAGAAA+CGG - chr5_2:4430490-4430509 None:intergenic 25.0%
!! TTAGTAGAGTTCATTTTCAT+TGG - chr5_2:4430582-4430601 None:intergenic 25.0%
!!! ACATGTTGATATGTTTTTGA+AGG + chr5_2:4431131-4431150 Msa0750860:intron 25.0%
! TTGTCTAACATTTCAATCAA+AGG + chr5_2:4431165-4431184 Msa0750860:intron 25.0%
!!! AGATTTTAGTTGGCAAATTT+GGG + chr5_2:4431260-4431279 Msa0750860:intron 25.0%
! CAATCTCTTCAAAAACTTAT+TGG - chr5_2:4431636-4431655 None:intergenic 25.0%
! AAAACTTAAACACAGGAAAT+TGG - chr5_2:4431677-4431696 None:intergenic 25.0%
! CACAACGACATATTAAAAAA+TGG - chr5_2:4431740-4431759 None:intergenic 25.0%
!!! TAGTTTTGCATTTGGAATTT+TGG + chr5_2:4432900-4432919 Msa0750860:intron 25.0%
!! ATAACTTTTGATATACTGCA+TGG - chr5_2:4433023-4433042 None:intergenic 25.0%
! CTAATGTCACAAAATTTCAA+GGG - chr5_2:4433177-4433196 None:intergenic 25.0%
! TCTAATGTCACAAAATTTCA+AGG - chr5_2:4433178-4433197 None:intergenic 25.0%
!! TGAAATTTTGTGACATTAGA+AGG + chr5_2:4433178-4433197 Msa0750860:intron 25.0%
! TTCAGAGTGATAAGATATTA+GGG + chr5_2:4433291-4433310 Msa0750860:intron 25.0%
!!! TTTTTTTGTATATACGTGTG+TGG + chr5_2:4433495-4433514 Msa0750860:intron 25.0%
!! CTACTTCTAATTTGTAGAAA+TGG + chr5_2:4433648-4433667 Msa0750860:intron 25.0%
! TGGATATATTAGATTTGACA+AGG + chr5_2:4433668-4433687 Msa0750860:intron 25.0%
! ATATTTGACATACTTCAATC+TGG - chr5_2:4434227-4434246 None:intergenic 25.0%
!!! GATTTTTTCTTCTACTTCTC+AGG - chr5_2:4430265-4430284 None:intergenic 30.0%
AGTGAAAGAAGAGTTATTCA+TGG + chr5_2:4430687-4430706 Msa0750860:intron 30.0%
! CTCTTCTTTTGGATTATCTA+AGG + chr5_2:4430881-4430900 Msa0750860:CDS 30.0%
! TAAAGTCGTGAATTAACTTG+TGG + chr5_2:4431192-4431211 Msa0750860:intron 30.0%
!! TGACTAACTCAGATTTTAGT+TGG + chr5_2:4431250-4431269 Msa0750860:intron 30.0%
!!! CAGATTTTAGTTGGCAAATT+TGG + chr5_2:4431259-4431278 Msa0750860:intron 30.0%
! TTTTGCGTAAACAGTCATTT+TGG + chr5_2:4431369-4431388 Msa0750860:intron 30.0%
!! ATTTTGGTCATTGAATGTGT+GGG + chr5_2:4431385-4431404 Msa0750860:intron 30.0%
TTGCAAATTCGATACATTCA+GGG - chr5_2:4431432-4431451 None:intergenic 30.0%
TTTGCAAATTCGATACATTC+AGG - chr5_2:4431433-4431452 None:intergenic 30.0%
ATGACTAACTTATGAGACAT+TGG - chr5_2:4431464-4431483 None:intergenic 30.0%
! GTCTCATAAGTTAGTCATTT+TGG + chr5_2:4431466-4431485 Msa0750860:intron 30.0%
TTACAAACAAAGTGATGCTT+TGG + chr5_2:4431530-4431549 Msa0750860:intron 30.0%
TACAAACAAAGTGATGCTTT+GGG + chr5_2:4431531-4431550 Msa0750860:intron 30.0%
TTTGCAATTTCGACACATTA+AGG + chr5_2:4431559-4431578 Msa0750860:intron 30.0%
TTGCAATTTCGACACATTAA+GGG + chr5_2:4431560-4431579 Msa0750860:intron 30.0%
CAAAAACTTATTGGATAACC+TGG - chr5_2:4431627-4431646 None:intergenic 30.0%
! TTGTGTGAATGTATTTTCTC+AGG + chr5_2:4431755-4431774 Msa0750860:intron 30.0%
! ATGTATTTTCTCAGGTTAAG+AGG + chr5_2:4431763-4431782 Msa0750860:intron 30.0%
! TGTATTTTCTCAGGTTAAGA+GGG + chr5_2:4431764-4431783 Msa0750860:intron 30.0%
! AAGTTTGTTTGATTCTGAAC+TGG + chr5_2:4431875-4431894 Msa0750860:CDS 30.0%
ATAGAGGTCAACTAAAGAAT+GGG + chr5_2:4431949-4431968 Msa0750860:CDS 30.0%
TTGGAATAGAAACCAAAACT+AGG + chr5_2:4432122-4432141 Msa0750860:intron 30.0%
TGGAATAGAAACCAAAACTA+GGG + chr5_2:4432123-4432142 Msa0750860:intron 30.0%
!!! TATCCACTTGTTGCTATTTT+AGG + chr5_2:4432624-4432643 Msa0750860:intron 30.0%
AAACCTAAAATAGCAACAAG+TGG - chr5_2:4432630-4432649 None:intergenic 30.0%
!!! ATTGAACACGTTGCTTTTTT+AGG + chr5_2:4432719-4432738 Msa0750860:CDS 30.0%
! TAAAAAACGTGAGAAGCTTT+TGG + chr5_2:4432745-4432764 Msa0750860:CDS 30.0%
! AAAAAACGTGAGAAGCTTTT+GGG + chr5_2:4432746-4432765 Msa0750860:CDS 30.0%
AATCTGTATAAGCATTTGAG+CGG - chr5_2:4432781-4432800 None:intergenic 30.0%
TTTGTCTTGCGTTCAATATT+AGG + chr5_2:4432870-4432889 Msa0750860:intron 30.0%
CTTCAGAGTGATAAGATATT+AGG + chr5_2:4433290-4433309 Msa0750860:intron 30.0%
TCAATTTCATCTTCTTTCTC+AGG - chr5_2:4433355-4433374 None:intergenic 30.0%
GAAAGAAGATGAAATTGAAG+AGG + chr5_2:4433357-4433376 Msa0750860:intron 30.0%
AAAAATGCAGGATACACATT+GGG - chr5_2:4433478-4433497 None:intergenic 30.0%
AAAAAATGCAGGATACACAT+TGG - chr5_2:4433479-4433498 None:intergenic 30.0%
TTATTGATGTGGTTGCTTAT+TGG + chr5_2:4433537-4433556 Msa0750860:intron 30.0%
ATTGGTGAATCTTTAATGTC+AGG + chr5_2:4433555-4433574 Msa0750860:intron 30.0%
AATAAATAGTACCTCGTTCA+GGG - chr5_2:4433614-4433633 None:intergenic 30.0%
AAATAAATAGTACCTCGTTC+AGG - chr5_2:4433615-4433634 None:intergenic 30.0%
!!! CTTTTTCAATCCTAGATGAA+AGG - chr5_2:4433859-4433878 None:intergenic 30.0%
! CATCTAGGATTGAAAAAGAA+AGG + chr5_2:4433861-4433880 Msa0750860:CDS 30.0%
ATCTGTTCTTCTAATCCAAT+TGG - chr5_2:4434093-4434112 None:intergenic 30.0%
TAGAAGAACAGATAAAGAAG+TGG + chr5_2:4434100-4434119 Msa0750860:CDS 30.0%
AGAAGAACAGATAAAGAAGT+GGG + chr5_2:4434101-4434120 Msa0750860:CDS 30.0%
!! AAATGCTACTTTGTACATTG+TGG + chr5_2:4434170-4434189 Msa0750860:CDS 30.0%
!! AATGCTACTTTGTACATTGT+GGG + chr5_2:4434171-4434190 Msa0750860:CDS 30.0%
AGATAGATTAGTGAGAGAAG+AGG - chr5_2:4430393-4430412 None:intergenic 35.0%
! CGATGATGATGATGATGATA+TGG - chr5_2:4430334-4430353 None:intergenic 35.0%
ATAAGAAGAAACGGTTGGAA+CGG - chr5_2:4430481-4430500 None:intergenic 35.0%
AGAAGATAAGAAGAAACGGT+TGG - chr5_2:4430486-4430505 None:intergenic 35.0%
GAAAGAAGAGTTATTCATGG+CGG + chr5_2:4430690-4430709 Msa0750860:CDS 35.0%
GAATAGTGTTTCCAAACATC+TGG - chr5_2:4430738-4430757 None:intergenic 35.0%
GAGTTATCAAAAAAAGCTCC+AGG - chr5_2:4430864-4430883 None:intergenic 35.0%
GAAATTAATACCTAGACTCG+CGG - chr5_2:4431226-4431245 None:intergenic 35.0%
! TTCATCTCAGTTTTCACGTT+TGG + chr5_2:4431324-4431343 Msa0750860:intron 35.0%
AAACGTATACACTACAAGTC+TGG - chr5_2:4431352-4431371 None:intergenic 35.0%
!! CATTTTGGTCATTGAATGTG+TGG + chr5_2:4431384-4431403 Msa0750860:intron 35.0%
TGTTTGATTCTGAACTGGAA+AGG + chr5_2:4431880-4431899 Msa0750860:CDS 35.0%
CATAGAGGTCAACTAAAGAA+TGG + chr5_2:4431948-4431967 Msa0750860:CDS 35.0%
!! CTAGTTGGTGGAACTTTATT+TGG - chr5_2:4431993-4432012 None:intergenic 35.0%
CAAATAAAGTTCCACCAACT+AGG + chr5_2:4431991-4432010 Msa0750860:CDS 35.0%
ATTTATTGAGCTCACCTAGT+TGG - chr5_2:4432008-4432027 None:intergenic 35.0%
!! ACCAAAACTAGGGTGTTTTA+AGG + chr5_2:4432133-4432152 Msa0750860:intron 35.0%
! ACCTTAAAACACCCTAGTTT+TGG - chr5_2:4432137-4432156 None:intergenic 35.0%
!!! AAAACTAGGGTGTTTTAAGG+TGG + chr5_2:4432136-4432155 Msa0750860:intron 35.0%
TCATTCAATTCACTTTCCAG+AGG + chr5_2:4432293-4432312 Msa0750860:intron 35.0%
ACAACCACTGAAAAACATGA+GGG - chr5_2:4432336-4432355 None:intergenic 35.0%
AACAACCACTGAAAAACATG+AGG - chr5_2:4432337-4432356 None:intergenic 35.0%
!! GTTTCTCTAAAATCCACTTG+TGG + chr5_2:4432589-4432608 Msa0750860:intron 35.0%
!!! TTTTAGGTTTGAAGCACACA+TGG + chr5_2:4432640-4432659 Msa0750860:intron 35.0%
ATCTGTATAAGCATTTGAGC+GGG - chr5_2:4432780-4432799 None:intergenic 35.0%
TGCGTTCAATATTAGGTCAT+TGG + chr5_2:4432877-4432896 Msa0750860:intron 35.0%
!! GTCATTGGTAGTTTTGCATT+TGG + chr5_2:4432892-4432911 Msa0750860:intron 35.0%
GGCATATCTGTTTATTGATG+TGG + chr5_2:4433526-4433545 Msa0750860:intron 35.0%
! CAAGGTGTTTCATCTGATTT+AGG + chr5_2:4433686-4433705 Msa0750860:intron 35.0%
AAATGTGGTAAAGATGGCTA+TGG + chr5_2:4433764-4433783 Msa0750860:intron 35.0%
TAGATGAAAGGAACTTTGGA+TGG - chr5_2:4433847-4433866 None:intergenic 35.0%
ATCCAAAGTTCCTTTCATCT+AGG + chr5_2:4433846-4433865 Msa0750860:CDS 35.0%
ATCCTAGATGAAAGGAACTT+TGG - chr5_2:4433851-4433870 None:intergenic 35.0%
TAAGAAAATTTCACGAGCGT+TGG + chr5_2:4434136-4434155 Msa0750860:CDS 35.0%
TGTACAAAGTAGCATTTGCA+GGG - chr5_2:4434167-4434186 None:intergenic 35.0%
ATGTACAAAGTAGCATTTGC+AGG - chr5_2:4434168-4434187 None:intergenic 35.0%
!! ATGCTACTTTGTACATTGTG+GGG + chr5_2:4434172-4434191 Msa0750860:CDS 35.0%
CATCGTTATGCATATGCCTA+TGG + chr5_2:4430349-4430368 Msa0750860:CDS 40.0%
AATCGAGTGGAGATTGAAGA+GGG - chr5_2:4430458-4430477 None:intergenic 40.0%
TCTCTTTCTCTTCTCCTCAA+CGG + chr5_2:4430513-4430532 Msa0750860:CDS 40.0%
! GAGAGTAATAAGTACCGTTG+AGG - chr5_2:4430530-4430549 None:intergenic 40.0%
!! AGAGTTATTCATGGCGGATT+AGG + chr5_2:4430696-4430715 Msa0750860:CDS 40.0%
GACGGAATAAACCAGATGTT+TGG + chr5_2:4430724-4430743 Msa0750860:CDS 40.0%
AAAAGCTCCAGGAACAAATC+TGG - chr5_2:4430853-4430872 None:intergenic 40.0%
TCTAAGGATAAGCTTCGTCA+TGG + chr5_2:4430897-4430916 Msa0750860:CDS 40.0%
AGTTGACCTCTATGCAACTT+GGG - chr5_2:4431942-4431961 None:intergenic 40.0%
TAGTTGACCTCTATGCAACT+TGG - chr5_2:4431943-4431962 None:intergenic 40.0%
!!! GGTGTTTTAAGGTGGAATTG+TGG + chr5_2:4432144-4432163 Msa0750860:intron 40.0%
TGATACCATTGTGCAAACAC+AGG + chr5_2:4432237-4432256 Msa0750860:intron 40.0%
GATACCATTGTGCAAACACA+GGG + chr5_2:4432238-4432257 Msa0750860:intron 40.0%
!! TATGCCCTCATGTTTTTCAG+TGG + chr5_2:4432329-4432348 Msa0750860:intron 40.0%
AGCAACAAGTGGATACTAAG+AGG - chr5_2:4432619-4432638 None:intergenic 40.0%
CATGGATGTGAAACACTGTA+TGG - chr5_2:4432808-4432827 None:intergenic 40.0%
ACAAAGAATCGCACACCAAA+TGG - chr5_2:4432855-4432874 None:intergenic 40.0%
AAACCTAGCAGATGCAAACA+GGG + chr5_2:4432969-4432988 Msa0750860:intron 40.0%
GAATACTCCCAATGCTCAAT+TGG + chr5_2:4433135-4433154 Msa0750860:intron 40.0%
! CAGAGTACCAATTGAGCATT+GGG - chr5_2:4433145-4433164 None:intergenic 40.0%
! TCAGAGTACCAATTGAGCAT+TGG - chr5_2:4433146-4433165 None:intergenic 40.0%
ATCCATGTCAATGCCATGAA+AGG + chr5_2:4433204-4433223 Msa0750860:intron 40.0%
!! TTCCTTTCATGGCATTGACA+TGG - chr5_2:4433209-4433228 None:intergenic 40.0%
TATACGTGTGTGGTGTGATT+AGG + chr5_2:4433505-4433524 Msa0750860:intron 40.0%
!! CCATCTGTAGAGGCATTTAA+GGG + chr5_2:4433739-4433758 Msa0750860:intron 40.0%
!! CATCTGTAGAGGCATTTAAG+GGG + chr5_2:4433740-4433759 Msa0750860:intron 40.0%
AGGCATTTAAGGGGAAAATG+TGG + chr5_2:4433749-4433768 Msa0750860:intron 40.0%
AGGGGAAAATGTGGTAAAGA+TGG + chr5_2:4433758-4433777 Msa0750860:intron 40.0%
GCATGCATCAATAACCACAA+GGG - chr5_2:4433814-4433833 None:intergenic 40.0%
TGCATGCATCAATAACCACA+AGG - chr5_2:4433815-4433834 None:intergenic 40.0%
TGAAAGGAACTTTGGATGGA+AGG - chr5_2:4433843-4433862 None:intergenic 40.0%
AAGATATCCTTTACAGCACC+TGG - chr5_2:4433943-4433962 None:intergenic 40.0%
GTGCTGTAAAGGATATCTTC+TGG + chr5_2:4433944-4433963 Msa0750860:intron 40.0%
CTGAAAACAAGCTGAGCAAA+AGG + chr5_2:4434064-4434083 Msa0750860:CDS 40.0%
CTGAGCAAAAGGTTTCCAAT+TGG + chr5_2:4434075-4434094 Msa0750860:CDS 40.0%
!! TGCTACTTTGTACATTGTGG+GGG + chr5_2:4434173-4434192 Msa0750860:CDS 40.0%
CAATCTGGCTAACAGTCTTT+GGG - chr5_2:4434212-4434231 None:intergenic 40.0%
TCAATCTGGCTAACAGTCTT+TGG - chr5_2:4434213-4434232 None:intergenic 40.0%
AATCAAGAGGTTGAGTGCGA+AGG + chr5_2:4430293-4430312 Msa0750860:CDS 45.0%
GTTGAAGTTGAAGCAGCCAT+AGG - chr5_2:4430368-4430387 None:intergenic 45.0%
GAATCGAGTGGAGATTGAAG+AGG - chr5_2:4430459-4430478 None:intergenic 45.0%
!! ATGGCGGATTAGGTTTACGA+CGG + chr5_2:4430706-4430725 Msa0750860:CDS 45.0%
ACTCGAACGACGTTTCTTTG+TGG - chr5_2:4430826-4430845 None:intergenic 45.0%
! AGTCTTGCCAGATTTGTTCC+TGG + chr5_2:4430843-4430862 Msa0750860:CDS 45.0%
GTTGGCAAATTTGGGTAGAC+TGG + chr5_2:4431268-4431287 Msa0750860:intron 45.0%
CAAGTTCCACATGCAACTGT+TGG + chr5_2:4431789-4431808 Msa0750860:CDS 45.0%
!! TGTTTTTCAGCAACGCCATC+GGG - chr5_2:4431849-4431868 None:intergenic 45.0%
!! CTGTTTTTCAGCAACGCCAT+CGG - chr5_2:4431850-4431869 None:intergenic 45.0%
TTCTGAACTGGAAAGGCTAG+AGG + chr5_2:4431887-4431906 Msa0750860:CDS 45.0%
TCTGAACTGGAAAGGCTAGA+GGG + chr5_2:4431888-4431907 Msa0750860:CDS 45.0%
! GAAAGGCTAGAGGGGTTTTT+GGG + chr5_2:4431897-4431916 Msa0750860:CDS 45.0%
GTTGACCTCTATGCAACTTG+GGG - chr5_2:4431941-4431960 None:intergenic 45.0%
TATTGAGCTCACCTAGTTGG+TGG - chr5_2:4432005-4432024 None:intergenic 45.0%
AATGCCCTGTGTTTGCACAA+TGG - chr5_2:4432245-4432264 None:intergenic 45.0%
! AACATGAGGGCATAACACTG+AGG - chr5_2:4432323-4432342 None:intergenic 45.0%
! ACTAAGAGGTTAGCCACAAG+TGG - chr5_2:4432605-4432624 None:intergenic 45.0%
TGCTGGATCGATAGATGAAG+AGG + chr5_2:4432670-4432689 Msa0750860:CDS 45.0%
GATGAAGAGGATGATGAGCA+AGG + chr5_2:4432683-4432702 Msa0750860:CDS 45.0%
GGATGTGAAACACTGTATGG+TGG - chr5_2:4432805-4432824 None:intergenic 45.0%
AATGGTCCAAACCTTGGTAG+TGG - chr5_2:4432837-4432856 None:intergenic 45.0%
CTACCAAGGTTTGGACCATT+TGG + chr5_2:4432837-4432856 Msa0750860:intron 45.0%
ACACCAAATGGTCCAAACCT+TGG - chr5_2:4432843-4432862 None:intergenic 45.0%
CTGTTTGCATCTGCTAGGTT+TGG - chr5_2:4432970-4432989 None:intergenic 45.0%
CAAACCTAGCAGATGCAAAC+AGG + chr5_2:4432968-4432987 Msa0750860:intron 45.0%
TTTCCCTGTTTGCATCTGCT+AGG - chr5_2:4432975-4432994 None:intergenic 45.0%
TGATCTCCTTCCATCTGTTC+TGG + chr5_2:4433585-4433604 Msa0750860:CDS 45.0%
ACTACTTGAGCCATCTGTAG+AGG + chr5_2:4433729-4433748 Msa0750860:intron 45.0%
!! GCCATCTGTAGAGGCATTTA+AGG + chr5_2:4433738-4433757 Msa0750860:intron 45.0%
CCCTTAAATGCCTCTACAGA+TGG - chr5_2:4433742-4433761 None:intergenic 45.0%
TAACCACAAGGGTGAGACAA+TGG - chr5_2:4433803-4433822 None:intergenic 45.0%
!! AGAGTATCGAGTTGATTGCC+AGG + chr5_2:4433922-4433941 Msa0750860:CDS 45.0%
! TTGATTGCCAGGTGCTGTAA+AGG + chr5_2:4433933-4433952 Msa0750860:intron 45.0%
AGATTGAAGAGGGAGAGTGG+CGG - chr5_2:4430448-4430467 None:intergenic 50.0%
TGGAGATTGAAGAGGGAGAG+TGG - chr5_2:4430451-4430470 None:intergenic 50.0%
! TTCTTCGCTGCTTTCTCCAC+CGG + chr5_2:4430755-4430774 Msa0750860:CDS 50.0%
GAGGCACAACTTTGCTGGAA+CGG - chr5_2:4430789-4430808 None:intergenic 50.0%
! AGCAAGAGGCACAACTTTGC+TGG - chr5_2:4430794-4430813 None:intergenic 50.0%
TGTGGAAGCAAGACAGCAAG+AGG - chr5_2:4430808-4430827 None:intergenic 50.0%
GGAATCAATTCCGCGAGTCT+AGG + chr5_2:4431213-4431232 Msa0750860:intron 50.0%
GACAGTACCTCACACGTTCA+GGG + chr5_2:4431591-4431610 Msa0750860:intron 50.0%
TCTGGACCAACAGTTGCATG+TGG - chr5_2:4431798-4431817 None:intergenic 50.0%
CGATGGCGTTGCTGAAAAAC+AGG + chr5_2:4431848-4431867 Msa0750860:CDS 50.0%
CTGAACTGGAAAGGCTAGAG+GGG + chr5_2:4431889-4431908 Msa0750860:CDS 50.0%
! GGAAAGGCTAGAGGGGTTTT+TGG + chr5_2:4431896-4431915 Msa0750860:CDS 50.0%
CTATGCAACTTGGGGTGAGA+TGG - chr5_2:4431933-4431952 None:intergenic 50.0%
TCTCACCCCAAGTTGCATAG+AGG + chr5_2:4431933-4431952 Msa0750860:CDS 50.0%
! CACAGGGCATTTGCTTGCTT+TGG + chr5_2:4432254-4432273 Msa0750860:intron 50.0%
! AGGGCATTTGCTTGCTTTGG+AGG + chr5_2:4432257-4432276 Msa0750860:intron 50.0%
ATAACACTGAGGTGTGCCTC+TGG - chr5_2:4432312-4432331 None:intergenic 50.0%
GCACACATGGAAGTTCATGC+TGG + chr5_2:4432653-4432672 Msa0750860:CDS 50.0%
!! CGTGAGAAGCTTTTGGGAAC+AGG + chr5_2:4432752-4432771 Msa0750860:CDS 50.0%
CTCCTACCACTACCAAGGTT+TGG + chr5_2:4432828-4432847 Msa0750860:intron 50.0%
!! GTCCAAACCTTGGTAGTGGT+AGG - chr5_2:4432833-4432852 None:intergenic 50.0%
! TTCAGGGCATCCAGAACAGA+TGG - chr5_2:4433598-4433617 None:intergenic 50.0%
GAGTGCGAAGGTGAAGAAGC+TGG + chr5_2:4430305-4430324 Msa0750860:CDS 55.0%
ACGGTTGGAACGGAATCGAG+TGG - chr5_2:4430471-4430490 None:intergenic 55.0%
CGACAGTACCTCACACGTTC+AGG + chr5_2:4431590-4431609 Msa0750860:intron 55.0%
TTTCGCTCCCTGAACGTGTG+AGG - chr5_2:4431601-4431620 None:intergenic 55.0%
CACACGTTCAGGGAGCGAAA+TGG + chr5_2:4431601-4431620 Msa0750860:intron 55.0%
!! CCTTGGTAGTGGTAGGAGCA+TGG - chr5_2:4432826-4432845 None:intergenic 55.0%
CCATGCTCCTACCACTACCA+AGG + chr5_2:4432823-4432842 Msa0750860:CDS 55.0%
GGGCATCCAGAACAGATGGA+AGG - chr5_2:4433594-4433613 None:intergenic 55.0%
! TGTTCTGGATGCCCTGAACG+AGG + chr5_2:4433600-4433619 Msa0750860:CDS 55.0%
CTGCCATTGTCTCACCCTTG+TGG + chr5_2:4433797-4433816 Msa0750860:intron 55.0%
! TTCGCTGCTTTCTCCACCGG+CGG + chr5_2:4430758-4430777 Msa0750860:CDS 60.0%
GTTCAGGGAGCGAAATGGCC+AGG + chr5_2:4431606-4431625 Msa0750860:intron 60.0%
ATCGGGCCAAGCTGTGCTTG+CGG - chr5_2:4431832-4431851 None:intergenic 60.0%
CTTGCGGCGTGTGGCTCATC+TGG - chr5_2:4431816-4431835 None:intergenic 65.0%
CAAGCTGTGCTTGCGGCGTG+TGG - chr5_2:4431825-4431844 None:intergenic 65.0%
CACACGCCGCAAGCACAGCT+TGG + chr5_2:4431823-4431842 Msa0750860:CDS 65.0%
GCAAGCACAGCTTGGCCCGA+TGG + chr5_2:4431831-4431850 Msa0750860:CDS 65.0%
! GCTGCTTTCTCCACCGGCGG+CGG + chr5_2:4430761-4430780 Msa0750860:CDS 70.0%
!! TGCTGGAACGGTGCCGCCGC+CGG - chr5_2:4430777-4430796 None:intergenic 75.0%
!!! TGGAACGGTGCCGCCGCCGG+TGG - chr5_2:4430774-4430793 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 4430245 4434248 4430245 ID=Msa0750860;Name=Msa0750860
chr5_2 mRNA 4430245 4434248 4430245 ID=Msa0750860-mRNA-1;Parent=Msa0750860;Name=Msa0750860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.71|1|1|1|7|0|438
chr5_2 exon 4430245 4430534 4430245 ID=Msa0750860-mRNA-1:exon:1666;Parent=Msa0750860-mRNA-1
chr5_2 exon 4430689 4430923 4430689 ID=Msa0750860-mRNA-1:exon:1667;Parent=Msa0750860-mRNA-1
chr5_2 exon 4431777 4432012 4431777 ID=Msa0750860-mRNA-1:exon:1668;Parent=Msa0750860-mRNA-1
chr5_2 exon 4432646 4432844 4432646 ID=Msa0750860-mRNA-1:exon:1669;Parent=Msa0750860-mRNA-1
chr5_2 exon 4433577 4433621 4433577 ID=Msa0750860-mRNA-1:exon:1670;Parent=Msa0750860-mRNA-1
chr5_2 exon 4433836 4433943 4433836 ID=Msa0750860-mRNA-1:exon:1671;Parent=Msa0750860-mRNA-1
chr5_2 exon 4434045 4434248 4434045 ID=Msa0750860-mRNA-1:exon:1672;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4430245 4430534 4430245 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4430689 4430923 4430689 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4431777 4432012 4431777 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4432646 4432844 4432646 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4433577 4433621 4433577 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4433836 4433943 4433836 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
chr5_2 CDS 4434045 4434248 4434045 ID=Msa0750860-mRNA-1:cds;Parent=Msa0750860-mRNA-1
Gene Sequence

>Msa0750860

CTTCTCATACATACATTCCTGAGAAGTAGAAGAAAAAATCATCAGAAAAATCAAGAGGTTGAGTGCGAAGGTGAAGAAGCTGGTACGCATATCATCATCATCATCATCGTTATGCATATGCCTATGGCTGCTTCAACTTCAACAACCTCTTCTCTCACTAATCTATCTCTTCCATATCATCATCATCATCATCGTCATCACCGCCACTCTCCCTCTTCAATCTCCACTCGATTCCGTTCCAACCGTTTCTTCTTATCTTCTTCTTCTCTCTCTTTCTCTTCTCCTCAACGTGAAAGAAGAGTTATTCATGGCGGATTAGGTTTACGACGGAATAAACCAGATGTTTGGAAACACTATTCTTCGCTGCTTTCTCCACCGGCGGCGGCACCGTTCCAGCAAAGTTGTGCCTCTTGCTGTCTTGCTTCCACAAAGAAACGTCGTTCGAGTCTTGCCAGATTTGTTCCTGGAGCTTTTTTTGATAACTCTTCTTTTGGATTATCTAAGGATAAGCTTCGTCATGGTTATGTTAAGAGGGTTCAAGTTCCACATGCAACTGTTGGTCCAGATGAGCCACACGCCGCAAGCACAGCTTGGCCCGATGGCGTTGCTGAAAAACAGGACTTAAGTTTGTTTGATTCTGAACTGGAAAGGCTAGAGGGGTTTTTGGGTTCTGAGCTTCCATCTCACCCCAAGTTGCATAGAGGTCAACTAAAGAATGGGTTGCGTTATTTGATTCTGCCAAATAAAGTTCCACCAACTAGGTTTGAAGCACACATGGAAGTTCATGCTGGATCGATAGATGAAGAGGATGATGAGCAAGGAATTGCACATATGATTGAACACGTTGCTTTTTTAGGAAGTAAAAAACGTGAGAAGCTTTTGGGAACAGGAGCCCGCTCAAATGCTTATACAGATTTCCACCATACAGTGTTTCACATCCATGCTCCTACCACTACCAAGGATTCTGATGATCTCCTTCCATCTGTTCTGGATGCCCTGAACGAGATAGCCTTCCATCCAAAGTTCCTTTCATCTAGGATTGAAAAAGAAAGGCGTGCTATACTCTCAGAGCTTCAAATGATGAACACTATAGAGTATCGAGTTGATTGCCAGTTGTTACAACATTTACATTCTGAAAACAAGCTGAGCAAAAGGTTTCCAATTGGATTAGAAGAACAGATAAAGAAGTGGGATGCAGAAAAAATAAGAAAATTTCACGAGCGTTGGTATTTCCCTGCAAATGCTACTTTGTACATTGTGGGGGATATTGATAACATCCCAAAGACTGTTAGCCAGATTGAAGTATGTCAAATATAA

Protein sequence

>Msa0750860

LLIHTFLRSRRKNHQKNQEVECEGEEAGTHIIIIIIVMHMPMAASTSTTSSLTNLSLPYHHHHHRHHRHSPSSISTRFRSNRFFLSSSSLSFSSPQRERRVIHGGLGLRRNKPDVWKHYSSLLSPPAAAPFQQSCASCCLASTKKRRSSLARFVPGAFFDNSSFGLSKDKLRHGYVKRVQVPHATVGPDEPHAASTAWPDGVAEKQDLSLFDSELERLEGFLGSELPSHPKLHRGQLKNGLRYLILPNKVPPTRFEAHMEVHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHAPTTTKDSDDLLPSVLDALNEIAFHPKFLSSRIEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDAEKIRKFHERWYFPANATLYIVGDIDNIPKTVSQIEVCQI*