AlfalfaGEDB | Msa0751770

M. sativa cultivar zhongmu-4 / Msa0751770

KEGG: K11647
GO: GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00176.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751770	sp\|F4J9M5\|CHR12_ARATH	72.919	997	252	6	4	988	110	1100	0.0	1437

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751770	G7K2A2	99.293	990	7	0	1	990	74	1063	0.0	2037

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0751770	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0749460	Msa0751770	0.879721	9.891214e-70	-8.615850e-47
Msa0751770	Msa1020710	0.802228	6.198273e-49	-8.615850e-47
Msa0751770	Msa1371960	0.884867	1.328682e-71	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751770	MtrunA17_Chr5g0394201	99.293	990	7	0	1	990	74	1063	0.0	2037
Msa0751770	MtrunA17_Chr1g0205891	81.936	1002	165	6	1	987	79	1079	0.0	1660
Msa0751770	MtrunA17_Chr4g0066651	44.832	745	369	13	96	812	791	1521	0.0	632
Msa0751770	MtrunA17_Chr4g0066741	47.628	527	254	8	277	796	176	687	4.62e-162	504
Msa0751770	MtrunA17_Chr7g0248031	39.490	785	375	14	144	843	827	1596	2.28e-156	510
Msa0751770	MtrunA17_Chr8g0348721	40.970	742	354	13	144	807	821	1556	1.82e-152	499
Msa0751770	MtrunA17_Chr2g0286291	46.869	527	258	8	277	796	179	690	2.38e-151	476
Msa0751770	MtrunA17_Chr5g0403921	44.118	510	248	9	284	768	178	675	7.25e-136	426
Msa0751770	MtrunA17_Chr3g0095091	46.640	491	233	7	277	749	558	1037	7.61e-131	433
Msa0751770	MtrunA17_Chr5g0442141	47.475	495	223	7	277	749	604	1083	2.49e-129	429

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751770	AT3G06010.1	72.919	997	252	6	4	988	110	1100	0.0	1437
Msa0751770	AT5G19310.1	68.756	989	278	8	2	985	96	1058	0.0	1335
Msa0751770	AT5G19310.2	68.620	819	226	8	172	985	2	794	0.0	1108
Msa0751770	AT2G28290.6	44.052	765	377	16	81	812	541	1287	0.0	604
Msa0751770	AT2G28290.3	44.052	765	377	16	81	812	540	1286	0.0	603
Msa0751770	AT2G28290.2	44.052	765	377	16	81	812	540	1286	0.0	603
Msa0751770	AT2G28290.1	44.052	765	377	16	81	812	540	1286	0.0	603
Msa0751770	AT2G28290.5	44.052	765	377	16	81	812	541	1287	0.0	603
Msa0751770	AT2G28290.4	44.052	765	377	16	81	812	540	1286	0.0	603
Msa0751770	AT2G46020.5	40.157	762	376	14	144	831	815	1570	2.05e-154	504

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Find 256 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGAAATCAAGGATAC+AGG	0.460250	5_2:-5240225	Msa0751770:CDS
AAACCTCAAGAATGTCCATG+AGG	0.733120	5_2:+5241926	None:intergenic
AAACTATGATATATATCGTA+GGG	0.566366	5_2:-5242052	Msa0751770:CDS
AAAGCATCTGAATCTTCCAA+TGG	0.558911	5_2:+5244741	None:intergenic
AAAGCGGACAAGAAAAGAAG+TGG	0.641891	5_2:-5240505	Msa0751770:CDS
AAAGGAAGAAATATCAGGGG+AGG	0.620434	5_2:-5244023	Msa0751770:CDS
AAAGGCTGTTCTGCCAAATT+GGG	0.437095	5_2:-5244245	Msa0751770:CDS
AAATAAACTGCTTGTAAATT+TGG	0.073163	5_2:-5244814	Msa0751770:CDS
AAATACTTGATTGTTGATGA+AGG	0.531356	5_2:-5243926	Msa0751770:CDS
AAATATTTGGGGAAAATTTC+TGG	0.201388	5_2:+5240045	None:intergenic

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCATCAACCTAAACAAGAA+CGG	+	chr5_2:5239909-5239928	None:intergenic	30.0%
ATTGTTCAATTTCGAACTAG+AGG	+	chr5_2:5240008-5240027	None:intergenic	30.0%
CGATATACGAAAAGCAATAA+AGG	+	chr5_2:5240703-5240722	None:intergenic	30.0%
TGATCAAATAAGGAAGAAAC+GGG	-	chr5_2:5241005-5241024	Msa0751770:intron	30.0%
AAACTGGATTTAAACCAAGT+GGG	+	chr5_2:5241074-5241093	None:intergenic	30.0%
AAAACTGGATTTAAACCAAG+TGG	+	chr5_2:5241075-5241094	None:intergenic	30.0%
TTTCACTCTCATTTATTCCT+TGG	+	chr5_2:5241162-5241181	None:intergenic	30.0%
AGCAAAAAATCTTCTTGTTC+TGG	+	chr5_2:5241274-5241293	None:intergenic	30.0%
TTGTAACAAATGAAAGACAG+CGG	+	chr5_2:5241395-5241414	None:intergenic	30.0%
TTCTTGCATATCCAGTATTA+TGG	+	chr5_2:5241496-5241515	None:intergenic	30.0%

Showing 1 to 10 of 528 entries

Previous1 2 3 4 5…53Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	5239894	5246797	5239894	ID=Msa0751770;Name=Msa0751770
chr5_2	mRNA	5239894	5246797	5239894	ID=Msa0751770-mRNA-1;Parent=Msa0751770;Name=Msa0751770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=137\|1\|1\|1\|1\|1\|11\|204\|990
chr5_2	exon	5239894	5240795	5239894	ID=Msa0751770-mRNA-1:exon:2139;Parent=Msa0751770-mRNA-1
chr5_2	exon	5241551	5242153	5241551	ID=Msa0751770-mRNA-1:exon:2138;Parent=Msa0751770-mRNA-1
chr5_2	exon	5242742	5242895	5242742	ID=Msa0751770-mRNA-1:exon:2137;Parent=Msa0751770-mRNA-1
chr5_2	exon	5242973	5243180	5242973	ID=Msa0751770-mRNA-1:exon:2136;Parent=Msa0751770-mRNA-1
chr5_2	exon	5243875	5244093	5243875	ID=Msa0751770-mRNA-1:exon:2135;Parent=Msa0751770-mRNA-1
chr5_2	exon	5244217	5244476	5244217	ID=Msa0751770-mRNA-1:exon:2134;Parent=Msa0751770-mRNA-1
chr5_2	exon	5244605	5244979	5244605	ID=Msa0751770-mRNA-1:exon:2133;Parent=Msa0751770-mRNA-1
chr5_2	exon	5245314	5245463	5245314	ID=Msa0751770-mRNA-1:exon:2132;Parent=Msa0751770-mRNA-1
chr5_2	exon	5245656	5245844	5245656	ID=Msa0751770-mRNA-1:exon:2131;Parent=Msa0751770-mRNA-1
chr5_2	exon	5246284	5246348	5246284	ID=Msa0751770-mRNA-1:exon:2130;Parent=Msa0751770-mRNA-1
chr5_2	exon	5246609	5246797	5246609	ID=Msa0751770-mRNA-1:exon:2129;Parent=Msa0751770-mRNA-1
chr5_2	five_prime_UTR	5246661	5246797	5246661	ID=Msa0751770-mRNA-1:five_prime_utr;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5246609	5246660	5246609	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5246284	5246348	5246284	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5245656	5245844	5245656	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5245314	5245463	5245314	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5244605	5244979	5244605	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5244217	5244476	5244217	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5243875	5244093	5243875	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5242973	5243180	5242973	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5242742	5242895	5242742	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5241551	5242153	5241551	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	CDS	5240098	5240795	5240098	ID=Msa0751770-mRNA-1:cds;Parent=Msa0751770-mRNA-1
chr5_2	three_prime_UTR	5239894	5240097	5239894	ID=Msa0751770-mRNA-1:three_prime_utr;Parent=Msa0751770-mRNA-1

Gene Sequence

>Msa0751770

ATGAAAGCTCGTACTCAAGCTCGGTTTCAGAATCGATTAACTCAGCTTGAAGGTTTGCGTTGGAACTGGGGGGACAACCTACAGACGAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTACAGGGGAAGGTTCGAATGGAAGTGAGCTCTGAATATTGGCTTAATGTTAACTGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGCATTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCGGAGAGACTATCTAGAATAGAAGAGCAAGCAAAAGGTCAGATAGAGACCAGAACAAGAAGATTTTTTGCTGAAATACTGAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAGGTTCTTTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCTGAGAAGCTGAGATTCCAAGCTTTAAAAGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACGTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCATTGGAAGATTCAGATGCTTTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGAGGATTTGATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCAACCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTATGCTTCAAGGCGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCGCAACATGGGCTCCTAGCATTACAGCTGTTTTATATGATGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAAATATCAGGGGAGGGGAAGTTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAAGGCCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACAACAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAACATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTACGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGTAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACCGACGTGGGCAGAGTTGGGTTAGACTACGGTTCTGGAAAATCAAAAAGTTTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGGGAGGAGATCGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGCCTCATGGACATTCTTGAGGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCACCATATTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAAAAGAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCCATTGAAGAGGTGATATTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCTGGCCTTTTCAATACAACGTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGCAGCTCACTTGGAACAGATGTGCCAAGCGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGATGAGGAATTTTGGCTGTTCGAGAGAATGGATGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGATGAGAACGAACTGCCAGATTGGGTATACTCGGCACTAAATAAGGATGAAAAGGCCAAAGCTTTTGACAGCAGTGCTGTTACTGGAAAGCGGACAAGAAAAGAAGTGGTATATGCAGATACGTTAAGTGATCTACAATGGATGAAGGCTGTGGAAAGCGGACATGATGTATCTAATTCTTCAGCTAAAGGAAAAAGAAGAATACGCCTCCCTATCGACAGCCATGCACAAACGAGTGATGACACCGGGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCATGGCAAATGAAAGATCAAATGAAGATACCTTTTATGGGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAGTAAGTTCCCATAAACATGAAATCAAGGATACAGGTGTAAGTGGTTTGAACGAGCATGTGTTTTCTTGGAATACTATTAGAAAAAAAAGATCAAGCTATCCTAGCCAGGGTTCATTATCTGATGCCAGAGGGCAGAATTCAAATGGAAGAAGAGCAAGCTAA

Protein sequence

>Msa0751770

MKARTQARFQNRLTQLEGLRWNWGDNLQTKCLLELYGLKLAELQGKVRMEVSSEYWLNVNCAYPDKQLFDWGMMRLRRPPYGIGDPFAMDADDQIRKKRDAERLSRIEEQAKGQIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSDALKNGISKESPLEEDEDLMDSDHNDDSSDLLEGQRQYNSTIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPFLIVAPKAVLPNWVNEFATWAPSITAVLYDGRMDERKAIKEEISGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDNSYHIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDEKAKAFDSSAVTGKRTRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRRIRLPIDSHAQTSDDTGAEERLLELSNTMANERSNEDTFYGTPASKRFKHEEVSSHKHEIKDTGVSGLNEHVFSWNTIRKKRSSYPSQGSLSDARGQNSNGRRAS*