AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753940 MtrunA17_Chr5g0398171 97.170 848 24 0 1 848 1 848 0.0 1730
Msa0753940 MtrunA17_Chr5g0398161 92.623 854 57 1 1 848 1 854 0.0 1663
Msa0753940 MtrunA17_Chr7g0246481 68.831 847 250 7 11 848 273 1114 0.0 1226
Msa0753940 MtrunA17_Chr8g0350951 68.713 847 248 6 15 848 207 1049 0.0 1223
Msa0753940 MtrunA17_Chr8g0380631 52.844 844 358 9 36 847 13 848 0.0 875
Msa0753940 MtrunA17_Chr3g0143471 50.745 873 374 13 23 847 1 865 0.0 870
Msa0753940 MtrunA17_Chr5g0406161 49.884 860 364 11 38 841 16 864 0.0 869
Msa0753940 MtrunA17_Chr2g0333021 45.311 821 403 16 36 837 4 797 0.0 711
Msa0753940 MtrunA17_Chr4g0003411 45.355 818 402 16 38 837 6 796 0.0 710
Msa0753940 MtrunA17_Chr3g0137821 44.418 833 407 20 37 838 4 811 0.0 675
Msa0753940 MtrunA17_Chr3g0137791 42.686 834 424 19 37 838 4 815 0.0 656
Msa0753940 MtrunA17_Chr2g0330431 41.192 772 383 20 84 842 36 749 0.0 538
Msa0753940 MtrunA17_Chr8g0341931 39.251 828 404 25 37 847 7 752 1.26e-170 512
Msa0753940 MtrunA17_Chr1g0192401 31.387 274 136 10 500 765 713 942 8.47e-23 105
Msa0753940 MtrunA17_Chr1g0192401 28.279 244 131 7 228 455 344 559 3.51e-19 93.2
Msa0753940 MtrunA17_Chr5g0406151 59.677 62 25 0 359 420 17 78 3.69e-21 88.6
Msa0753940 MtrunA17_Chr2g0295411 30.000 220 111 7 252 455 394 586 5.56e-19 92.8
Msa0753940 MtrunA17_Chr2g0295411 33.838 198 100 8 540 732 785 956 5.29e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753940 AT2G42010.1 70.000 840 240 7 15 848 250 1083 0.0 1258
Msa0753940 AT2G42010.2 67.977 865 240 8 15 848 250 1108 0.0 1245
Msa0753940 AT4G00240.1 66.825 841 265 6 15 848 94 927 0.0 1206
Msa0753940 AT4G11850.1 67.342 839 260 6 21 848 23 858 0.0 1201
Msa0753940 AT4G11840.1 64.821 867 280 8 3 848 4 866 0.0 1174
Msa0753940 AT4G00240.2 65.472 837 248 6 15 848 94 892 0.0 1166
Msa0753940 AT4G00240.3 68.912 772 234 3 80 848 7 775 0.0 1158
Msa0753940 AT4G11830.2 64.720 856 278 9 13 848 5 856 0.0 1150
Msa0753940 AT4G11840.2 63.468 865 265 8 3 848 4 836 0.0 1140
Msa0753940 AT4G11830.1 63.647 850 265 9 13 848 5 824 0.0 1118
Msa0753940 AT4G35790.2 51.508 862 355 15 35 847 9 856 0.0 873
Msa0753940 AT4G35790.1 50.859 873 355 16 35 847 9 867 0.0 865
Msa0753940 AT4G11830.4 63.880 634 212 7 13 633 5 634 0.0 840
Msa0753940 AT4G11830.3 64.506 617 202 7 13 616 5 617 0.0 825
Msa0753940 AT3G15730.1 45.543 819 405 16 37 838 5 799 0.0 721
Msa0753940 AT1G52570.1 45.043 817 412 15 37 838 5 799 0.0 713
Msa0753940 AT1G52570.3 45.043 817 412 15 37 838 5 799 0.0 713
Msa0753940 AT1G52570.2 45.043 817 412 15 37 838 5 799 0.0 713
Msa0753940 AT4G35790.3 50.000 688 291 12 35 675 9 690 0.0 672
Msa0753940 AT5G25370.1 44.928 828 406 17 36 837 5 808 0.0 667
Msa0753940 AT5G25370.3 44.928 828 406 17 36 837 5 808 0.0 667
Msa0753940 AT5G25370.2 44.928 828 406 17 36 837 5 808 0.0 667
Msa0753940 AT5G25370.4 46.791 748 364 13 105 837 5 733 0.0 653
Msa0753940 AT1G55180.2 39.406 774 385 23 84 837 19 728 3.46e-169 508
Msa0753940 AT1G55180.1 38.659 820 404 26 38 837 10 750 7.43e-169 508
Msa0753940 AT3G16785.4 29.924 264 135 8 228 475 362 591 7.35e-19 92.8
Msa0753940 AT3G16785.4 33.168 202 102 7 537 732 756 930 1.38e-18 91.7
Msa0753940 AT3G16785.6 29.924 264 135 8 228 475 362 591 8.77e-19 92.4
Msa0753940 AT3G16785.6 33.659 205 97 8 537 732 756 930 9.31e-19 92.4
Msa0753940 AT3G16785.5 29.924 264 135 8 228 475 362 591 8.77e-19 92.4
Msa0753940 AT3G16785.5 33.659 205 97 8 537 732 756 930 9.31e-19 92.4
Msa0753940 AT3G16785.3 29.924 264 135 8 228 475 362 591 8.78e-19 92.4
Msa0753940 AT3G16785.3 33.659 205 97 8 537 732 756 930 9.17e-19 92.4
Msa0753940 AT3G16785.2 29.924 264 135 8 228 475 362 591 8.78e-19 92.4
Msa0753940 AT3G16785.2 33.659 205 97 8 537 732 756 930 9.17e-19 92.4
Msa0753940 AT3G16785.1 29.924 264 135 8 228 475 362 591 1.02e-18 92.4
Msa0753940 AT3G16785.1 33.659 205 97 8 537 732 756 930 1.11e-18 92.0
Msa0753940 AT3G05630.1 29.084 251 120 6 228 455 357 572 2.15e-18 91.3
Msa0753940 AT3G05630.1 32.068 237 121 10 540 765 714 921 1.14e-17 89.0

Find 174 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGGCTCATCATATAAT+TGG 0.123581 5_2:-7536476 Msa0753940:CDS
AACATGGCTCATTTGGTTTA+TGG 0.146616 5_2:-7539440 Msa0753940:CDS
GACAGAATCTCTGACATTAT+TGG 0.203366 5_2:-7536925 Msa0753940:CDS
GTTCCACAAGGTTGTCTTCC+TGG 0.213475 5_2:-7538777 Msa0753940:CDS
ATAGCCTCTTTCGGTTCTTT+TGG 0.270707 5_2:+7536713 None:intergenic
TGGAAATCCTTTCACAGAAT+TGG 0.280674 5_2:+7536733 None:intergenic
TCTCACACCTTCTTGTGATT+TGG 0.281020 5_2:+7538566 None:intergenic
TATGGTGAAACTCCATCTTT+TGG 0.282104 5_2:-7539422 Msa0753940:CDS
CACCAACACCATTGTTATAA+AGG 0.284689 5_2:+7538877 None:intergenic
TTCCCCATTCTGAATACTAA+TGG 0.290444 5_2:-7538966 Msa0753940:CDS
CAACCAACGCTCCTCAAAAT+TGG 0.295875 5_2:+7537014 None:intergenic
GGATGATGAATATGTGTTAA+TGG 0.311012 5_2:-7535559 Msa0753940:CDS
CTACTCAGCGGATTCTCTTT+TGG 0.327403 5_2:-7536084 Msa0753940:CDS
CCTACTTCTAAAAGCATGTT+TGG 0.328089 5_2:-7538519 Msa0753940:CDS
CTTCCTGGTTTGAGGGTTGA+TGG 0.329744 5_2:-7538762 Msa0753940:CDS
AGAAAGATTGTAGCTTTCAT+TGG 0.331331 5_2:-7537343 Msa0753940:CDS
CTCCAACACATTCTCTCTTT+AGG 0.344293 5_2:-7537288 Msa0753940:CDS
TTCAAGTCCAGCTTCCTCTA+AGG 0.344523 5_2:+7535864 None:intergenic
CGAGGAGACTTGGCATGTTC+AGG 0.346544 5_2:-7536869 Msa0753940:intron
GGTCATTGAGTGAGTATAAC+TGG 0.346798 5_2:-7535323 Msa0753940:CDS
AACAATTTACAAAGCCTTAG+AGG 0.346968 5_2:-7535878 Msa0753940:CDS
CAACCACTTCCAGTTCCTTA+AGG 0.347611 5_2:-7539358 Msa0753940:CDS
GATGGAAAAGATTGTACATT+AGG 0.350227 5_2:-7538603 Msa0753940:CDS
ACCCTTTGTATAGCCTCTTT+CGG 0.356128 5_2:+7536704 None:intergenic
TTGTGAAAAGTGTCCATGTT+AGG 0.365738 5_2:+7539281 None:intergenic
ACTACAATGTTAGTCTCATT+AGG 0.367770 5_2:-7538635 Msa0753940:CDS
TTAAAATGTTGCATCCAAAC+AGG 0.372747 5_2:+7539122 None:intergenic
GATTTACATTCCAAAGTTGA+TGG 0.378840 5_2:-7537060 Msa0753940:CDS
GTGCTTCTTTGCCCAAGATC+TGG 0.384976 5_2:-7538289 Msa0753940:CDS
TTGAATGTGTGAGAAGAATA+AGG 0.385372 5_2:-7535344 Msa0753940:CDS
TTTCAAGCACTCTTCAGTTA+AGG 0.392408 5_2:-7538311 Msa0753940:CDS
TAGTGCCTTCCATGGATCTC+TGG 0.394336 5_2:+7535520 None:intergenic
CATATCAGCCTAATCATACT+TGG 0.394543 5_2:-7535473 Msa0753940:CDS
GATGTTGGTGGAAACATAAA+AGG 0.396303 5_2:-7535186 Msa0753940:CDS
ATGATATATGTTCATTCAAA+AGG 0.399907 5_2:-7535591 Msa0753940:CDS
GTACTTGAGGGTACACCTTC+AGG 0.405376 5_2:+7536109 None:intergenic
TCTTGGCTCATCATATAATT+GGG 0.407407 5_2:-7536475 Msa0753940:CDS
GTATAACTGGAGACAATATT+TGG 0.407854 5_2:-7535310 Msa0753940:CDS
AGGTTGTCTTCCTGGTTTGA+GGG 0.407941 5_2:-7538769 Msa0753940:CDS
CTCACACATTCAATGCTCTC+TGG 0.408766 5_2:+7535354 None:intergenic
TTTATGTTTCCACCAACATC+AGG 0.412800 5_2:+7535189 None:intergenic
CAAAACGGTTTCAGTCTTGA+AGG 0.413615 5_2:+7538938 None:intergenic
GAGTAGGATCCTTAAGGAAC+TGG 0.413863 5_2:+7539349 None:intergenic
AAGGTTGTCTTCCTGGTTTG+AGG 0.418530 5_2:-7538770 Msa0753940:CDS
TGCCCAAGATCTGGAGGAAA+AGG 0.418793 5_2:-7538280 Msa0753940:CDS
TTTCCATTAGTATTCAGAAT+GGG 0.420135 5_2:+7538963 None:intergenic
CTACAATGTTAGTCTCATTA+GGG 0.423726 5_2:-7538634 Msa0753940:CDS
ATTGTTGGTTCACAGCTTAT+TGG 0.425858 5_2:-7539044 Msa0753940:CDS
TGGGTTGAGTTTCCAAAAGA+TGG 0.430054 5_2:+7539410 None:intergenic
GGATGACTAACCTCGTAGTT+AGG 0.436794 5_2:+7537229 None:intergenic
TAAAGGGCTACCTTATGAAT+AGG 0.439458 5_2:+7538894 None:intergenic
GCCATGAGGTTTAGAATGCT+TGG 0.439767 5_2:+7535446 None:intergenic
ACCAACACCATTGTTATAAA+GGG 0.443797 5_2:+7538878 None:intergenic
GATGATGAATATGTGTTAAT+GGG 0.443827 5_2:-7535558 Msa0753940:CDS
TGCAAACAATTTAATTCCAA+TGG 0.444897 5_2:-7536206 Msa0753940:CDS
CATTATCAGAACTTGGTTTG+TGG 0.445554 5_2:-7536591 Msa0753940:intron
AAAACAATGCAAATGATGTA+TGG 0.449561 5_2:-7535901 Msa0753940:CDS
ATCTTTAGAGCAATTTCCAT+TGG 0.451686 5_2:+7536190 None:intergenic
CTGATCAATTGCTAGGAAGC+TGG 0.453979 5_2:-7537427 Msa0753940:intron
GCCACAGAAACTGTGACATA+TGG 0.457329 5_2:+7539191 None:intergenic
TCACAGCTTATTGGTGCAGT+TGG 0.457651 5_2:-7539035 Msa0753940:CDS
GAACTGGAAGTGGTTGGAAA+TGG 0.465271 5_2:+7539365 None:intergenic
TCTGATGCTTGATGTGCAAC+AGG 0.468636 5_2:+7539095 None:intergenic
AAGATTGTAGCTTTCATTGG+AGG 0.469148 5_2:-7537340 Msa0753940:CDS
CATGGATCTCTGGTTTATGT+TGG 0.469572 5_2:+7535530 None:intergenic
TGTGTCTCTAGTGCCTTCCA+TGG 0.469917 5_2:+7535512 None:intergenic
GATAATGAAAATATTTCAAA+TGG 0.472444 5_2:-7535781 Msa0753940:CDS
GAAATGATGAGAACCCTGTT+TGG 0.472532 5_2:-7539136 Msa0753940:CDS
ATGTAAGAGTAGGATCCTTA+AGG 0.477010 5_2:+7539343 None:intergenic
TCAGTATACTCCTATTCATA+AGG 0.478673 5_2:-7538904 Msa0753940:CDS
ATTGATTCCAATTCTGTGAA+AGG 0.480729 5_2:-7536740 Msa0753940:CDS
TACAAAGCCTTAGAGGAAGC+TGG 0.481881 5_2:-7535871 Msa0753940:CDS
CTAAGTGGAAAATATGTAGC+AGG 0.483576 5_2:+7538837 None:intergenic
TTAAGGATCCTACTCTTACA+TGG 0.484339 5_2:-7539341 Msa0753940:CDS
GGCAGCAGGACCATCAACTT+TGG 0.486946 5_2:+7537050 None:intergenic
GGAGGTCTTGATTTATGTCT+CGG 0.489146 5_2:-7537322 Msa0753940:CDS
CCCACTTGAAGTTGATTCAA+AGG 0.489310 5_2:-7535247 Msa0753940:CDS
CAAGTTGTTGACCTTGGCCA+TGG 0.492002 5_2:+7539390 None:intergenic
CGCTGAGTAGCTGTACTTGA+GGG 0.493399 5_2:+7536097 None:intergenic
TATCTTTGATGCAATAAGTC+AGG 0.496499 5_2:-7538694 Msa0753940:CDS
CTTAGAAATTTGCATTCAAG+AGG 0.500352 5_2:-7539315 Msa0753940:CDS
CCTAGGCAATCGCGAGCTCT+CGG 0.501874 5_2:-7535803 Msa0753940:CDS
AAGCATGTTTGGATATAAAA+CGG 0.501929 5_2:-7538508 Msa0753940:intron
ACATAGCTGGCTCAAACAGC+AGG 0.503041 5_2:-7538257 Msa0753940:intron
CTAAGTTTCCATGTAAGAGT+AGG 0.504094 5_2:+7539333 None:intergenic
TATGTCACAGTTTCTGTGGC+TGG 0.506020 5_2:-7539188 Msa0753940:CDS
GGTATTGTGAAGCCTCTTGT+TGG 0.507683 5_2:-7535225 Msa0753940:CDS
AAAATTGGTGAGGATGTCAT+AGG 0.508031 5_2:+7537029 None:intergenic
TGACATATGGATCACTGGTT+TGG 0.509086 5_2:+7539204 None:intergenic
AAATCATGCCATGGTTGTCT+TGG 0.510852 5_2:+7537078 None:intergenic
TGTGATGGTGCAAAAGTTGA+AGG 0.511511 5_2:-7538993 Msa0753940:CDS
GTCATTGTGGATGCTGATGC+TGG 0.513953 5_2:-7537376 Msa0753940:CDS
CGTCGATTGGTCTATATCGT+TGG 0.517326 5_2:-7538669 Msa0753940:CDS
GATCCTTAAGGAACTGGAAG+TGG 0.519956 5_2:+7539355 None:intergenic
GTAAAAGACAGTGATATTGT+TGG 0.521060 5_2:-7539059 Msa0753940:CDS
CCCTTTGAATCAACTTCAAG+TGG 0.521666 5_2:+7535246 None:intergenic
AACTGTGACATATGGATCAC+TGG 0.522198 5_2:+7539199 None:intergenic
CCACTTGAAGTTGATTCAAA+GGG 0.523346 5_2:-7535246 Msa0753940:CDS
GCATTCTAAACCTCATGGCC+AGG 0.525344 5_2:-7535442 Msa0753940:CDS
GCCCTTTATAACAATGGTGT+TGG 0.526442 5_2:-7538879 Msa0753940:CDS
ACCGAAAGAGGCTATACAAA+GGG 0.526697 5_2:-7536705 Msa0753940:intron
AATAAGTCAGGCACGTCGAT+TGG 0.528514 5_2:-7538682 Msa0753940:CDS
GATTGGTCTATATCGTTGGT+TGG 0.530259 5_2:-7538665 Msa0753940:CDS
AAACCTCATGGCCAGGTGCA+TGG 0.536424 5_2:-7535435 Msa0753940:CDS
GGAAACTCAACCCATGGCCA+AGG 0.537671 5_2:-7539401 Msa0753940:CDS
CTGAATAGATAAGCTCAAAA+CGG 0.543575 5_2:+7538923 None:intergenic
GAAAAGTGTCCATGTTAGGA+AGG 0.547302 5_2:+7539285 None:intergenic
GTGAGGATGTCATAGGCAGC+AGG 0.549590 5_2:+7537036 None:intergenic
TTGGTTGCCCAAGTATGATT+AGG 0.552687 5_2:+7535465 None:intergenic
CTCATTAGGGATACTAGAGA+TGG 0.553430 5_2:-7538621 Msa0753940:CDS
CCGCTGAGTAGCTGTACTTG+AGG 0.553731 5_2:+7536096 None:intergenic
GAGAGTGCTTCTACTTGTGT+GGG 0.553897 5_2:-7538547 Msa0753940:CDS
ATGGAACAAGTTGTTGACCT+TGG 0.554587 5_2:+7539384 None:intergenic
CCGAGAGCTCGCGATTGCCT+AGG 0.555324 5_2:+7535803 None:intergenic
CTTTATAACAATGGTGTTGG+TGG 0.555512 5_2:-7538876 Msa0753940:CDS
ATGAACATAACGAGGAGACT+TGG 0.556011 5_2:-7536879 Msa0753940:CDS
AGAGACACAGAAATTGCAAT+GGG 0.556833 5_2:-7535498 Msa0753940:CDS
CTGGAGGAAAAGGACATAGC+TGG 0.557282 5_2:-7538270 Msa0753940:CDS
GTCATTCCTATGTGGCCTGA+AGG 0.557851 5_2:-7536124 Msa0753940:CDS
ATTTCCAAAAGAACCGAAAG+AGG 0.558961 5_2:-7536717 Msa0753940:CDS
CTTAAGGAACTGGAAGTGGT+TGG 0.559661 5_2:+7539359 None:intergenic
TCAAATGGTGTAAAATCTAA+CGG 0.559838 5_2:-7535766 Msa0753940:CDS
GAAACATTCCCTGATGTTGG+TGG 0.568615 5_2:-7535198 Msa0753940:CDS
AAAACGGTTTCAGTCTTGAA+GGG 0.570945 5_2:+7538939 None:intergenic
TCATTCAAAAGGAATGATAG+TGG 0.571139 5_2:-7535580 Msa0753940:CDS
TGTGAAACATTCCCTGATGT+TGG 0.574572 5_2:-7535201 Msa0753940:CDS
TGAAAATGAGTATGAACCAC+AGG 0.574704 5_2:-7535845 Msa0753940:CDS
CTCAAAGCCAAATCACAAGA+AGG 0.575595 5_2:-7538573 Msa0753940:CDS
TTCCATTAGTATTCAGAATG+GGG 0.576021 5_2:+7538964 None:intergenic
CTACCATCAACCCTCAAACC+AGG 0.577070 5_2:+7538759 None:intergenic
TGAGAGTGCTTCTACTTGTG+TGG 0.580023 5_2:-7538548 Msa0753940:CDS
GTTATGAGAGTGGAAATTGT+TGG 0.584095 5_2:-7538722 Msa0753940:CDS
AAGTTGTTGACCTTGGCCAT+GGG 0.585494 5_2:+7539391 None:intergenic
CTTCTTTGCCCAAGATCTGG+AGG 0.588065 5_2:-7538286 Msa0753940:CDS
GTCCTAAAGAGAGAATGTGT+TGG 0.588200 5_2:+7537286 None:intergenic
GGTACACCTTCAGGCCACAT+AGG 0.590249 5_2:+7536118 None:intergenic
TCTCCTCGTTATGTTCATCA+AGG 0.590663 5_2:+7536884 None:intergenic
CAAGATGCTCATGTTCCACA+AGG 0.591161 5_2:-7538789 Msa0753940:CDS
GATGAAGTAACTGAAATGAA+TGG 0.594500 5_2:-7535285 Msa0753940:CDS
TAAAATGTTGCATCCAAACA+GGG 0.594950 5_2:+7539123 None:intergenic
TGTATATTGTCATTCCTATG+TGG 0.598261 5_2:-7536132 Msa0753940:CDS
ACCAAGCATTCTAAACCTCA+TGG 0.599513 5_2:-7535447 Msa0753940:CDS
AATGTTTCACAGCCAACAAG+AGG 0.600850 5_2:+7535213 None:intergenic
ATATCAGCCTAATCATACTT+GGG 0.606198 5_2:-7535472 Msa0753940:CDS
AAGGTAGCCCTTTATAACAA+TGG 0.607429 5_2:-7538885 Msa0753940:CDS
TCCATATGTCACAGTTTCTG+TGG 0.610596 5_2:-7539192 Msa0753940:CDS
CAACATAAACCAGAGATCCA+TGG 0.611244 5_2:-7535529 Msa0753940:CDS
ACATTCTATAACCATGCACC+TGG 0.613891 5_2:+7535424 None:intergenic
CAGAATTGGAATCAATCGAA+CGG 0.616861 5_2:+7536747 None:intergenic
TCATCAGAAGACAGTCATTG+TGG 0.621048 5_2:-7537389 Msa0753940:CDS
TTATGTTTCCACCAACATCA+GGG 0.624080 5_2:+7535190 None:intergenic
CCAGTTGAAAAGTTATGTGA+TGG 0.628489 5_2:-7539008 Msa0753940:CDS
TTGGAATGTAAATCATGCCA+TGG 0.631208 5_2:+7537069 None:intergenic
TGGGATTCTTACAAAGACCT+CGG 0.632737 5_2:-7536456 Msa0753940:intron
AACCGAAAGAGGCTATACAA+AGG 0.636642 5_2:-7536706 Msa0753940:CDS
AACGCTCCTCAAAATTGGTG+AGG 0.637134 5_2:+7537019 None:intergenic
CATGATGTGAGTTATGAGAG+TGG 0.638733 5_2:-7538732 Msa0753940:CDS
TAACCATGCACCTGGCCATG+AGG 0.638841 5_2:+7535432 None:intergenic
AAGAAATTCAAGTAGTCCTG+TGG 0.640692 5_2:+7535829 None:intergenic
TAGAGACACAGAAATTGCAA+TGG 0.640880 5_2:-7535499 Msa0753940:CDS
TCGTTATGTTCATCAAGGCA+AGG 0.642714 5_2:+7536889 None:intergenic
CCTTTGAATCAACTTCAAGT+GGG 0.643296 5_2:+7535247 None:intergenic
GAGTGAACACATAGGAGGTG+TGG 0.650771 5_2:-7535394 Msa0753940:CDS
TTGTGGAGTGAACACATAGG+AGG 0.674142 5_2:-7535399 Msa0753940:CDS
CTGGTTGTCCAAGACAACCA+TGG 0.675621 5_2:-7537086 Msa0753940:CDS
CTTTCATAATCCTAACTACG+AGG 0.683265 5_2:-7537239 Msa0753940:intron
ACTTATGAACACTTATGACG+AGG 0.684284 5_2:-7538347 Msa0753940:CDS
ATAAACCAGAGATCCATGGA+AGG 0.708922 5_2:-7535525 Msa0753940:CDS
GAGACTAACATTGTAGTACA+CGG 0.710080 5_2:+7538641 None:intergenic
TTGCCTTGATGAACATAACG+AGG 0.728222 5_2:-7536887 Msa0753940:CDS
CCTCAAGTACAGCTACTCAG+CGG 0.757598 5_2:-7536096 Msa0753940:CDS
TCATTGTGGAGTGAACACAT+AGG 0.759631 5_2:-7535402 Msa0753940:CDS
AAACCAGGAAGACAACCTTG+TGG 0.759726 5_2:+7538774 None:intergenic
ATGGTTATAGAATGTCATTG+TGG 0.779677 5_2:-7535416 Msa0753940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATGAAAATATTTCAAA+TGG - chr5_2:7538805-7538824 Msa0753940:CDS 15.0%
!!! ATTTTGTTACCAAGTTTTTT+AGG + chr5_2:7535359-7535378 None:intergenic 20.0%
!! TTAATCTTTCACTATTCTTT+CGG - chr5_2:7536907-7536926 Msa0753940:CDS 20.0%
!!! ATTTGTTAGAAAACTAACTA+GGG + chr5_2:7537029-7537048 None:intergenic 20.0%
!!! TATTTGTTAGAAAACTAACT+AGG + chr5_2:7537030-7537049 None:intergenic 20.0%
!! CTTAATAATATCTGTATTAC+TGG + chr5_2:7537080-7537099 None:intergenic 20.0%
!! TTTAAATACAGTATACTACT+CGG + chr5_2:7537120-7537139 None:intergenic 20.0%
!! GTCTGAAAATATATTATAAG+TGG - chr5_2:7537432-7537451 Msa0753940:intron 20.0%
!! TGAAAATATATTATAAGTGG+TGG - chr5_2:7537435-7537454 Msa0753940:intron 20.0%
!!! ATTGAGAATCAATATTTTCT+TGG - chr5_2:7538094-7538113 Msa0753940:intron 20.0%
!! CTTCTTAATAATTATGTCTT+TGG + chr5_2:7538601-7538620 None:intergenic 20.0%
!! TTAAGAAGAACATATTGTTA+TGG - chr5_2:7538613-7538632 Msa0753940:CDS 20.0%
!! ATGATATATGTTCATTCAAA+AGG - chr5_2:7538995-7539014 Msa0753940:CDS 20.0%
! TTTCCATTAGTATTCAGAAT+GGG + chr5_2:7535626-7535645 None:intergenic 25.0%
!! TTTTCCATTAGTATTCAGAA+TGG + chr5_2:7535627-7535646 None:intergenic 25.0%
!! ACATATTTTCCACTTAGAAA+AGG - chr5_2:7535755-7535774 Msa0753940:CDS 25.0%
! AAGCATGTTTGGATATAAAA+CGG - chr5_2:7536078-7536097 Msa0753940:intron 25.0%
! TTCAAAATGTAACTAATTGC+AGG + chr5_2:7536139-7536158 None:intergenic 25.0%
!!! ACTATGATTTGTTGATATGT+AGG - chr5_2:7536212-7536231 Msa0753940:intron 25.0%
! AAACATAAGTACACTAGTTA+AGG - chr5_2:7536498-7536517 Msa0753940:CDS 25.0%
! GCTCATTGAATTAAAACTAA+CGG + chr5_2:7536549-7536568 None:intergenic 25.0%
!!! TTGATCAATCATATTGATTC+TGG - chr5_2:7536629-7536648 Msa0753940:intron 25.0%
!!! AGCATTTCGTATTTTGAATA+TGG + chr5_2:7536760-7536779 None:intergenic 25.0%
! GAAGTCAATAATACAAACTT+GGG + chr5_2:7536828-7536847 None:intergenic 25.0%
! TGAAGTCAATAATACAAACT+TGG + chr5_2:7536829-7536848 None:intergenic 25.0%
! TAATCTTTCACTATTCTTTC+GGG - chr5_2:7536908-7536927 Msa0753940:CDS 25.0%
! AATTGATCAGAAAGCAAAAT+AGG + chr5_2:7537149-7537168 None:intergenic 25.0%
!! ATTGTTTTCACCTTACAAAT+CGG - chr5_2:7537458-7537477 Msa0753940:intron 25.0%
! TATTGAAGAAGTTTCTCAAA+GGG + chr5_2:7537765-7537784 None:intergenic 25.0%
! ATATTGAAGAAGTTTCTCAA+AGG + chr5_2:7537766-7537785 None:intergenic 25.0%
! TGCAAACAATTTAATTCCAA+TGG - chr5_2:7538380-7538399 Msa0753940:intron 25.0%
! AAAACAATGCAAATGATGTA+TGG - chr5_2:7538685-7538704 Msa0753940:CDS 25.0%
! TCAAATGGTGTAAAATCTAA+CGG - chr5_2:7538820-7538839 Msa0753940:CDS 25.0%
! GATTAAAAACAAAATACCTG+AGG + chr5_2:7538856-7538875 None:intergenic 25.0%
! AATGATTAACTAACTTGATC+TGG + chr5_2:7538923-7538942 None:intergenic 25.0%
!! TCATTATTGTTTGCACATTT+TGG - chr5_2:7538938-7538957 Msa0753940:CDS 25.0%
! GATGATGAATATGTGTTAAT+GGG - chr5_2:7539028-7539047 Msa0753940:CDS 25.0%
!! ATTTTCTTGAAGTACAGTAA+AGG + chr5_2:7539428-7539447 None:intergenic 25.0%
CTTAGAAATTTGCATTCAAG+AGG - chr5_2:7535271-7535290 Msa0753940:CDS 30.0%
TCAATCCTACCTAAAAAACT+TGG - chr5_2:7535347-7535366 Msa0753940:CDS 30.0%
!!! TGTTACCAAGTTTTTTAGGT+AGG + chr5_2:7535355-7535374 None:intergenic 30.0%
TAAAATGTTGCATCCAAACA+GGG + chr5_2:7535466-7535485 None:intergenic 30.0%
TTAAAATGTTGCATCCAAAC+AGG + chr5_2:7535467-7535486 None:intergenic 30.0%
GTAAAAGACAGTGATATTGT+TGG - chr5_2:7535527-7535546 Msa0753940:CDS 30.0%
TTCCATTAGTATTCAGAATG+GGG + chr5_2:7535625-7535644 None:intergenic 30.0%
CTGAATAGATAAGCTCAAAA+CGG + chr5_2:7535666-7535685 None:intergenic 30.0%
TCAGTATACTCCTATTCATA+AGG - chr5_2:7535682-7535701 Msa0753940:intron 30.0%
ACCAACACCATTGTTATAAA+GGG + chr5_2:7535711-7535730 None:intergenic 30.0%
! TATTTTCCACTTAGAAAAGG+TGG - chr5_2:7535758-7535777 Msa0753940:CDS 30.0%
TATCTTTGATGCAATAAGTC+AGG - chr5_2:7535892-7535911 Msa0753940:CDS 30.0%
! ACTACAATGTTAGTCTCATT+AGG - chr5_2:7535951-7535970 Msa0753940:intron 30.0%
! CTACAATGTTAGTCTCATTA+GGG - chr5_2:7535952-7535971 Msa0753940:intron 30.0%
GATGGAAAAGATTGTACATT+AGG - chr5_2:7535983-7536002 Msa0753940:intron 30.0%
!! TGATTTGTTGATATGTAGGT+TGG - chr5_2:7536216-7536235 Msa0753940:intron 30.0%
TGTCTATTGAGTGCATAATA+TGG - chr5_2:7536376-7536395 Msa0753940:intron 30.0%
TGAGTGCATAATATGGTTTA+AGG - chr5_2:7536383-7536402 Msa0753940:intron 30.0%
AGAGATGAATGCGAAAAAAT+AGG - chr5_2:7536602-7536621 Msa0753940:intron 30.0%
TCAATAATACAAACTTGGGT+GGG + chr5_2:7536824-7536843 None:intergenic 30.0%
ACAGATATATGCAGAATTCA+CGG + chr5_2:7536872-7536891 None:intergenic 30.0%
! GCATATATCTGTTTTGTCAT+TGG - chr5_2:7536880-7536899 Msa0753940:CDS 30.0%
AGAAAGATTGTAGCTTTCAT+TGG - chr5_2:7537243-7537262 Msa0753940:CDS 30.0%
! TTGTTTTCACCTTACAAATC+GGG - chr5_2:7537459-7537478 Msa0753940:intron 30.0%
GATTTACATTCCAAAGTTGA+TGG - chr5_2:7537526-7537545 Msa0753940:intron 30.0%
! ATTGATTCCAATTCTGTGAA+AGG - chr5_2:7537846-7537865 Msa0753940:intron 30.0%
TTGACTTCATTATCAGAACT+TGG - chr5_2:7537988-7538007 Msa0753940:intron 30.0%
TTCTTGGCTCATCATATAAT+TGG - chr5_2:7538110-7538129 Msa0753940:intron 30.0%
TCTTGGCTCATCATATAATT+GGG - chr5_2:7538111-7538130 Msa0753940:intron 30.0%
GCAAAGGAATGAATATAACA+AGG + chr5_2:7538348-7538367 None:intergenic 30.0%
!! ATCTTTAGAGCAATTTCCAT+TGG + chr5_2:7538399-7538418 None:intergenic 30.0%
TGTATATTGTCATTCCTATG+TGG - chr5_2:7538454-7538473 Msa0753940:intron 30.0%
AACAATTTACAAAGCCTTAG+AGG - chr5_2:7538708-7538727 Msa0753940:CDS 30.0%
! TACTTGAATTTCTTTTGCCT+AGG - chr5_2:7538766-7538785 Msa0753940:CDS 30.0%
TCATTCAAAAGGAATGATAG+TGG - chr5_2:7539006-7539025 Msa0753940:CDS 30.0%
GGATGATGAATATGTGTTAA+TGG - chr5_2:7539027-7539046 Msa0753940:CDS 30.0%
ATATCAGCCTAATCATACTT+GGG - chr5_2:7539114-7539133 Msa0753940:CDS 30.0%
ATGGTTATAGAATGTCATTG+TGG - chr5_2:7539170-7539189 Msa0753940:CDS 30.0%
TTGAATGTGTGAGAAGAATA+AGG - chr5_2:7539242-7539261 Msa0753940:CDS 30.0%
GTATAACTGGAGACAATATT+TGG - chr5_2:7539276-7539295 Msa0753940:CDS 30.0%
GATGAAGTAACTGAAATGAA+TGG - chr5_2:7539301-7539320 Msa0753940:CDS 30.0%
! TATGGTGAAACTCCATCTTT+TGG - chr5_2:7535164-7535183 Msa0753940:CDS 35.0%
ATGTAAGAGTAGGATCCTTA+AGG + chr5_2:7535246-7535265 None:intergenic 35.0%
TTAAGGATCCTACTCTTACA+TGG - chr5_2:7535245-7535264 Msa0753940:CDS 35.0%
CTAAGTTTCCATGTAAGAGT+AGG + chr5_2:7535256-7535275 None:intergenic 35.0%
!! TTGTGAAAAGTGTCCATGTT+AGG + chr5_2:7535308-7535327 None:intergenic 35.0%
!! ATTGTTGGTTCACAGCTTAT+TGG - chr5_2:7535542-7535561 Msa0753940:CDS 35.0%
! CCATCACATAACTTTTCAAC+TGG + chr5_2:7535581-7535600 None:intergenic 35.0%
CCAGTTGAAAAGTTATGTGA+TGG - chr5_2:7535578-7535597 Msa0753940:CDS 35.0%
TTCCCCATTCTGAATACTAA+TGG - chr5_2:7535620-7535639 Msa0753940:CDS 35.0%
AAAACGGTTTCAGTCTTGAA+GGG + chr5_2:7535650-7535669 None:intergenic 35.0%
TAAAGGGCTACCTTATGAAT+AGG + chr5_2:7535695-7535714 None:intergenic 35.0%
AAGGTAGCCCTTTATAACAA+TGG - chr5_2:7535701-7535720 Msa0753940:intron 35.0%
CACCAACACCATTGTTATAA+AGG + chr5_2:7535712-7535731 None:intergenic 35.0%
! CTTTATAACAATGGTGTTGG+TGG - chr5_2:7535710-7535729 Msa0753940:intron 35.0%
CTAAGTGGAAAATATGTAGC+AGG + chr5_2:7535752-7535771 None:intergenic 35.0%
! ACTTTTCCACCTTTTCTAAG+TGG + chr5_2:7535767-7535786 None:intergenic 35.0%
GTTATGAGAGTGGAAATTGT+TGG - chr5_2:7535864-7535883 Msa0753940:CDS 35.0%
GAGACTAACATTGTAGTACA+CGG + chr5_2:7535948-7535967 None:intergenic 35.0%
!! CCAAACATGCTTTTAGAAGT+AGG + chr5_2:7536070-7536089 None:intergenic 35.0%
! CCTACTTCTAAAAGCATGTT+TGG - chr5_2:7536067-7536086 Msa0753940:intron 35.0%
GCAACTGCTTGCAAATTAAT+AGG + chr5_2:7536173-7536192 None:intergenic 35.0%
ACTTATGAACACTTATGACG+AGG - chr5_2:7536239-7536258 Msa0753940:intron 35.0%
TTTCAAGCACTCTTCAGTTA+AGG - chr5_2:7536275-7536294 Msa0753940:intron 35.0%
CTAACTATACATGAGAGAGT+GGG - chr5_2:7536652-7536671 Msa0753940:intron 35.0%
TGATATATATGATGCCACAC+AGG - chr5_2:7536686-7536705 Msa0753940:intron 35.0%
AGAAATGCAAAAATCCTGTG+TGG + chr5_2:7536703-7536722 None:intergenic 35.0%
GTCAATAATACAAACTTGGG+TGG + chr5_2:7536825-7536844 None:intergenic 35.0%
ACGGCATGTTGTTGAATAAA+AGG + chr5_2:7536853-7536872 None:intergenic 35.0%
GTTAGAAAACTAACTAGGGA+TGG + chr5_2:7537025-7537044 None:intergenic 35.0%
TTGCTTTCTGATCAATTGCT+AGG - chr5_2:7537152-7537171 Msa0753940:intron 35.0%
AAGATTGTAGCTTTCATTGG+AGG - chr5_2:7537246-7537265 Msa0753940:CDS 35.0%
CTTTCATAATCCTAACTACG+AGG - chr5_2:7537347-7537366 Msa0753940:CDS 35.0%
GTCTCTCATCGGATAAAATA+TGG - chr5_2:7537410-7537429 Msa0753940:CDS 35.0%
!! CTTACAAATCGGGTTTTGTA+GGG - chr5_2:7537469-7537488 Msa0753940:intron 35.0%
TTGGAATGTAAATCATGCCA+TGG + chr5_2:7537520-7537539 None:intergenic 35.0%
AAAATTGGTGAGGATGTCAT+AGG + chr5_2:7537560-7537579 None:intergenic 35.0%
GACAGAATCTCTGACATTAT+TGG - chr5_2:7537661-7537680 Msa0753940:intron 35.0%
CAGAATTGGAATCAATCGAA+CGG + chr5_2:7537842-7537861 None:intergenic 35.0%
TGGAAATCCTTTCACAGAAT+TGG + chr5_2:7537856-7537875 None:intergenic 35.0%
ATTTCCAAAAGAACCGAAAG+AGG - chr5_2:7537869-7537888 Msa0753940:intron 35.0%
CTTCATTCTCTTCTCAAACT+TGG - chr5_2:7537912-7537931 Msa0753940:intron 35.0%
CTCTTTGATTAACACTTCAC+AGG + chr5_2:7537951-7537970 None:intergenic 35.0%
! CATTATCAGAACTTGGTTTG+TGG - chr5_2:7537995-7538014 Msa0753940:intron 35.0%
AATACTTCAATACGTGACGA+GGG + chr5_2:7538290-7538309 None:intergenic 35.0%
AAATACTTCAATACGTGACG+AGG + chr5_2:7538291-7538310 None:intergenic 35.0%
!! CATTCCTTTGCTTTTATGAC+AGG - chr5_2:7538357-7538376 Msa0753940:intron 35.0%
TCCTTTACCACCTGAAAAAA+TGG - chr5_2:7538535-7538554 Msa0753940:CDS 35.0%
!!! ACCATTTTTTCAGGTGGTAA+AGG + chr5_2:7538539-7538558 None:intergenic 35.0%
!!! ACATCTGTCACCATTTTTTC+AGG + chr5_2:7538548-7538567 None:intergenic 35.0%
TGAAAATGAGTATGAACCAC+AGG - chr5_2:7538741-7538760 Msa0753940:CDS 35.0%
AAGAAATTCAAGTAGTCCTG+TGG + chr5_2:7538760-7538779 None:intergenic 35.0%
AACTAACTTGATCTGGAAAC+AGG + chr5_2:7538916-7538935 None:intergenic 35.0%
!! GTTTGCACATTTTGGAAACT+AGG - chr5_2:7538946-7538965 Msa0753940:CDS 35.0%
TAGAGACACAGAAATTGCAA+TGG - chr5_2:7539087-7539106 Msa0753940:CDS 35.0%
AGAGACACAGAAATTGCAAT+GGG - chr5_2:7539088-7539107 Msa0753940:CDS 35.0%
CATATCAGCCTAATCATACT+TGG - chr5_2:7539113-7539132 Msa0753940:CDS 35.0%
CCTTTGAATCAACTTCAAGT+GGG + chr5_2:7539342-7539361 None:intergenic 35.0%
! CCACTTGAAGTTGATTCAAA+GGG - chr5_2:7539340-7539359 Msa0753940:CDS 35.0%
TTATGTTTCCACCAACATCA+GGG + chr5_2:7539399-7539418 None:intergenic 35.0%
TTTATGTTTCCACCAACATC+AGG + chr5_2:7539400-7539419 None:intergenic 35.0%
! GATGTTGGTGGAAACATAAA+AGG - chr5_2:7539400-7539419 Msa0753940:CDS 35.0%
! TGGGTTGAGTTTCCAAAAGA+TGG + chr5_2:7535179-7535198 None:intergenic 40.0%
!! TCTTTTGGAAACTCAACCCA+TGG - chr5_2:7535179-7535198 Msa0753940:CDS 40.0%
ATGGAACAAGTTGTTGACCT+TGG + chr5_2:7535205-7535224 None:intergenic 40.0%
! GTCCATGTTAGGAAGGTTTT+TGG + chr5_2:7535297-7535316 None:intergenic 40.0%
!! GAAAAGTGTCCATGTTAGGA+AGG + chr5_2:7535304-7535323 None:intergenic 40.0%
! GACACTTTTCACAAGAACCT+GGG - chr5_2:7535314-7535333 Msa0753940:CDS 40.0%
! ACACTTTTCACAAGAACCTG+GGG - chr5_2:7535315-7535334 Msa0753940:CDS 40.0%
! TGACATATGGATCACTGGTT+TGG + chr5_2:7535385-7535404 None:intergenic 40.0%
AACTGTGACATATGGATCAC+TGG + chr5_2:7535390-7535409 None:intergenic 40.0%
TCCATATGTCACAGTTTCTG+TGG - chr5_2:7535394-7535413 Msa0753940:CDS 40.0%
GAAATGATGAGAACCCTGTT+TGG - chr5_2:7535450-7535469 Msa0753940:CDS 40.0%
! TGTGATGGTGCAAAAGTTGA+AGG - chr5_2:7535593-7535612 Msa0753940:CDS 40.0%
CAAAACGGTTTCAGTCTTGA+AGG + chr5_2:7535651-7535670 None:intergenic 40.0%
GCCCTTTATAACAATGGTGT+TGG - chr5_2:7535707-7535726 Msa0753940:intron 40.0%
CATGATGTGAGTTATGAGAG+TGG - chr5_2:7535854-7535873 Msa0753940:CDS 40.0%
!! GATTGGTCTATATCGTTGGT+TGG - chr5_2:7535921-7535940 Msa0753940:intron 40.0%
CTCATTAGGGATACTAGAGA+TGG - chr5_2:7535965-7535984 Msa0753940:intron 40.0%
CTCAAAGCCAAATCACAAGA+AGG - chr5_2:7536013-7536032 Msa0753940:intron 40.0%
TCTCACACCTTCTTGTGATT+TGG + chr5_2:7536023-7536042 None:intergenic 40.0%
GCAGGTAAGCATCAATAGAA+AGG + chr5_2:7536121-7536140 None:intergenic 40.0%
GCTAACTATACATGAGAGAG+TGG - chr5_2:7536651-7536670 Msa0753940:intron 40.0%
ATACAAACTTGGGTGGGATA+TGG + chr5_2:7536818-7536837 None:intergenic 40.0%
ATTGCTATATCCAGCGAAAG+AGG + chr5_2:7536938-7536957 None:intergenic 40.0%
TCATCAGAAGACAGTCATTG+TGG - chr5_2:7537197-7537216 Msa0753940:intron 40.0%
GGAGGTCTTGATTTATGTCT+CGG - chr5_2:7537264-7537283 Msa0753940:CDS 40.0%
CTCCAACACATTCTCTCTTT+AGG - chr5_2:7537298-7537317 Msa0753940:CDS 40.0%
GTCCTAAAGAGAGAATGTGT+TGG + chr5_2:7537303-7537322 None:intergenic 40.0%
TTCCCTTAAGAGTCTCTCAT+CGG - chr5_2:7537399-7537418 Msa0753940:CDS 40.0%
ATCCGATGAGAGACTCTTAA+GGG + chr5_2:7537404-7537423 None:intergenic 40.0%
TATCCGATGAGAGACTCTTA+AGG + chr5_2:7537405-7537424 None:intergenic 40.0%
! CCTACAAAACCCGATTTGTA+AGG + chr5_2:7537471-7537490 None:intergenic 40.0%
!! CCTTACAAATCGGGTTTTGT+AGG - chr5_2:7537468-7537487 Msa0753940:intron 40.0%
! GTTTTGTAGGGTTCTGTTAC+TGG - chr5_2:7537481-7537500 Msa0753940:intron 40.0%
AAATCATGCCATGGTTGTCT+TGG + chr5_2:7537511-7537530 None:intergenic 40.0%
! TGACATCCTCACCAATTTTG+AGG - chr5_2:7537561-7537580 Msa0753940:intron 40.0%
TCGTTATGTTCATCAAGGCA+AGG + chr5_2:7537700-7537719 None:intergenic 40.0%
TTGCCTTGATGAACATAACG+AGG - chr5_2:7537699-7537718 Msa0753940:intron 40.0%
TCTCCTCGTTATGTTCATCA+AGG + chr5_2:7537705-7537724 None:intergenic 40.0%
ATGAACATAACGAGGAGACT+TGG - chr5_2:7537707-7537726 Msa0753940:intron 40.0%
! ATAGCCTCTTTCGGTTCTTT+TGG + chr5_2:7537876-7537895 None:intergenic 40.0%
AACCGAAAGAGGCTATACAA+AGG - chr5_2:7537880-7537899 Msa0753940:intron 40.0%
ACCGAAAGAGGCTATACAAA+GGG - chr5_2:7537881-7537900 Msa0753940:intron 40.0%
ACCCTTTGTATAGCCTCTTT+CGG + chr5_2:7537885-7537904 None:intergenic 40.0%
TGGGATTCTTACAAAGACCT+CGG - chr5_2:7538130-7538149 Msa0753940:intron 40.0%
CTCAAAAACGAAGAGACAGA+GGG - chr5_2:7538164-7538183 Msa0753940:intron 40.0%
TCAAAAACGAAGAGACAGAG+GGG - chr5_2:7538165-7538184 Msa0753940:intron 40.0%
TGCACCTGTCATAAAAGCAA+AGG + chr5_2:7538364-7538383 None:intergenic 40.0%
!!! TCTGTCACCATTTTTTCAGG+TGG + chr5_2:7538545-7538564 None:intergenic 40.0%
TAACGGAAAAAACACTCCTC+AGG - chr5_2:7538837-7538856 Msa0753940:CDS 40.0%
! CATGGATCTCTGGTTTATGT+TGG + chr5_2:7539059-7539078 None:intergenic 40.0%
CAACATAAACCAGAGATCCA+TGG - chr5_2:7539057-7539076 Msa0753940:CDS 40.0%
ATAAACCAGAGATCCATGGA+AGG - chr5_2:7539061-7539080 Msa0753940:CDS 40.0%
TTGGTTGCCCAAGTATGATT+AGG + chr5_2:7539124-7539143 None:intergenic 40.0%
ACCAAGCATTCTAAACCTCA+TGG - chr5_2:7539139-7539158 Msa0753940:CDS 40.0%
ACATTCTATAACCATGCACC+TGG + chr5_2:7539165-7539184 None:intergenic 40.0%
TCATTGTGGAGTGAACACAT+AGG - chr5_2:7539184-7539203 Msa0753940:CDS 40.0%
GGTCATTGAGTGAGTATAAC+TGG - chr5_2:7539263-7539282 Msa0753940:CDS 40.0%
! CCCACTTGAAGTTGATTCAA+AGG - chr5_2:7539339-7539358 Msa0753940:CDS 40.0%
CCCTTTGAATCAACTTCAAG+TGG + chr5_2:7539343-7539362 None:intergenic 40.0%
AATGTTTCACAGCCAACAAG+AGG + chr5_2:7539376-7539395 None:intergenic 40.0%
TGTGAAACATTCCCTGATGT+TGG - chr5_2:7539385-7539404 Msa0753940:CDS 40.0%
AAGTTGTTGACCTTGGCCAT+GGG + chr5_2:7535198-7535217 None:intergenic 45.0%
GAACTGGAAGTGGTTGGAAA+TGG + chr5_2:7535224-7535243 None:intergenic 45.0%
CTTAAGGAACTGGAAGTGGT+TGG + chr5_2:7535230-7535249 None:intergenic 45.0%
CAACCACTTCCAGTTCCTTA+AGG - chr5_2:7535228-7535247 Msa0753940:CDS 45.0%
GATCCTTAAGGAACTGGAAG+TGG + chr5_2:7535234-7535253 None:intergenic 45.0%
GAGTAGGATCCTTAAGGAAC+TGG + chr5_2:7535240-7535259 None:intergenic 45.0%
GGCCAAAAACCTTCCTAACA+TGG - chr5_2:7535292-7535311 Msa0753940:CDS 45.0%
! GGACACTTTTCACAAGAACC+TGG - chr5_2:7535313-7535332 Msa0753940:CDS 45.0%
! CACTTTTCACAAGAACCTGG+GGG - chr5_2:7535316-7535335 Msa0753940:CDS 45.0%
GCCACAGAAACTGTGACATA+TGG + chr5_2:7535398-7535417 None:intergenic 45.0%
TATGTCACAGTTTCTGTGGC+TGG - chr5_2:7535398-7535417 Msa0753940:CDS 45.0%
TCTGATGCTTGATGTGCAAC+AGG + chr5_2:7535494-7535513 None:intergenic 45.0%
TCACAGCTTATTGGTGCAGT+TGG - chr5_2:7535551-7535570 Msa0753940:CDS 45.0%
!!! GGTGTTGGTGGTGATTTTCA+AGG - chr5_2:7535722-7535741 Msa0753940:intron 45.0%
CAAGATGCTCATGTTCCACA+AGG - chr5_2:7535797-7535816 Msa0753940:CDS 45.0%
AAACCAGGAAGACAACCTTG+TGG + chr5_2:7535815-7535834 None:intergenic 45.0%
! AAGGTTGTCTTCCTGGTTTG+AGG - chr5_2:7535816-7535835 Msa0753940:CDS 45.0%
! AGGTTGTCTTCCTGGTTTGA+GGG - chr5_2:7535817-7535836 Msa0753940:CDS 45.0%
AATAAGTCAGGCACGTCGAT+TGG - chr5_2:7535904-7535923 Msa0753940:CDS 45.0%
!! CGTCGATTGGTCTATATCGT+TGG - chr5_2:7535917-7535936 Msa0753940:intron 45.0%
!! TGAGAGTGCTTCTACTTGTG+TGG - chr5_2:7536038-7536057 Msa0753940:intron 45.0%
!! GAGAGTGCTTCTACTTGTGT+GGG - chr5_2:7536039-7536058 Msa0753940:intron 45.0%
! GTCCTTTTCCTCCAGATCTT+GGG + chr5_2:7536311-7536330 None:intergenic 45.0%
! TGTCCTTTTCCTCCAGATCT+TGG + chr5_2:7536312-7536331 None:intergenic 45.0%
ACTAACGGCAATCGAGCAAT+AGG + chr5_2:7536534-7536553 None:intergenic 45.0%
AAACTTGGGTGGGATATGGT+CGG + chr5_2:7536814-7536833 None:intergenic 45.0%
CTGATCAATTGCTAGGAAGC+TGG - chr5_2:7537159-7537178 Msa0753940:intron 45.0%
GGATGACTAACCTCGTAGTT+AGG + chr5_2:7537360-7537379 None:intergenic 45.0%
AACGCTCCTCAAAATTGGTG+AGG + chr5_2:7537570-7537589 None:intergenic 45.0%
!! TCACCAATTTTGAGGAGCGT+TGG - chr5_2:7537569-7537588 Msa0753940:intron 45.0%
CAACCAACGCTCCTCAAAAT+TGG + chr5_2:7537575-7537594 None:intergenic 45.0%
!!! TTTTGAGGAGCGTTGGTTGA+TGG - chr5_2:7537576-7537595 Msa0753940:intron 45.0%
TTTGAGCTCAATACTCACCG+AGG + chr5_2:7538150-7538169 None:intergenic 45.0%
GCTCAAAAACGAAGAGACAG+AGG - chr5_2:7538163-7538182 Msa0753940:intron 45.0%
!! CTACTCAGCGGATTCTCTTT+TGG - chr5_2:7538502-7538521 Msa0753940:intron 45.0%
TGTCAGTATCAAACATGCGC+AGG + chr5_2:7538661-7538680 None:intergenic 45.0%
TACAAAGCCTTAGAGGAAGC+TGG - chr5_2:7538715-7538734 Msa0753940:CDS 45.0%
TTCAAGTCCAGCTTCCTCTA+AGG + chr5_2:7538725-7538744 None:intergenic 45.0%
GATCTGGAAACAGGCACAAA+AGG + chr5_2:7538907-7538926 None:intergenic 45.0%
! GCCATGAGGTTTAGAATGCT+TGG + chr5_2:7539143-7539162 None:intergenic 45.0%
TTGTGGAGTGAACACATAGG+AGG - chr5_2:7539187-7539206 Msa0753940:CDS 45.0%
CTCACACATTCAATGCTCTC+TGG + chr5_2:7539235-7539254 None:intergenic 45.0%
GGTATTGTGAAGCCTCTTGT+TGG - chr5_2:7539361-7539380 Msa0753940:CDS 45.0%
GAAACATTCCCTGATGTTGG+TGG - chr5_2:7539388-7539407 Msa0753940:CDS 45.0%
!! AAATAATGAAAATAAAAAAA+TGG + chr5_2:7537381-7537400 None:intergenic 5.0%
!! TTAAAAATATTACATTATAT+AGG - chr5_2:7538309-7538328 Msa0753940:CDS 5.0%
CAAGTTGTTGACCTTGGCCA+TGG + chr5_2:7535199-7535218 None:intergenic 50.0%
GTTCCACAAGGTTGTCTTCC+TGG - chr5_2:7535809-7535828 Msa0753940:CDS 50.0%
! CTTCCTGGTTTGAGGGTTGA+TGG - chr5_2:7535824-7535843 Msa0753940:CDS 50.0%
CTACCATCAACCCTCAAACC+AGG + chr5_2:7535830-7535849 None:intergenic 50.0%
GTGCTTCTTTGCCCAAGATC+TGG - chr5_2:7536297-7536316 Msa0753940:intron 50.0%
CTTCTTTGCCCAAGATCTGG+AGG - chr5_2:7536300-7536319 Msa0753940:intron 50.0%
TGCCCAAGATCTGGAGGAAA+AGG - chr5_2:7536306-7536325 Msa0753940:intron 50.0%
CTGGAGGAAAAGGACATAGC+TGG - chr5_2:7536316-7536335 Msa0753940:intron 50.0%
! ACATAGCTGGCTCAAACAGC+AGG - chr5_2:7536329-7536348 Msa0753940:intron 50.0%
GTCATTGTGGATGCTGATGC+TGG - chr5_2:7537210-7537229 Msa0753940:intron 50.0%
CTGGTTGTCCAAGACAACCA+TGG - chr5_2:7537500-7537519 Msa0753940:intron 50.0%
GTCATTCCTATGTGGCCTGA+AGG - chr5_2:7538462-7538481 Msa0753940:intron 50.0%
! GTACTTGAGGGTACACCTTC+AGG + chr5_2:7538480-7538499 None:intergenic 50.0%
CGCTGAGTAGCTGTACTTGA+GGG + chr5_2:7538492-7538511 None:intergenic 50.0%
CCTCAAGTACAGCTACTCAG+CGG - chr5_2:7538490-7538509 Msa0753940:intron 50.0%
!! TCAGCGGATTCTCTTTTGGC+AGG - chr5_2:7538506-7538525 Msa0753940:intron 50.0%
TAGTGCCTTCCATGGATCTC+TGG + chr5_2:7539069-7539088 None:intergenic 50.0%
TGTGTCTCTAGTGCCTTCCA+TGG + chr5_2:7539077-7539096 None:intergenic 50.0%
GCATTCTAAACCTCATGGCC+AGG - chr5_2:7539144-7539163 Msa0753940:CDS 50.0%
GAGTGAACACATAGGAGGTG+TGG - chr5_2:7539192-7539211 Msa0753940:CDS 50.0%
GGAAACTCAACCCATGGCCA+AGG - chr5_2:7535185-7535204 Msa0753940:CDS 55.0%
!! GGATTGAAAGCATTGCCCCC+AGG + chr5_2:7535334-7535353 None:intergenic 55.0%
TTCGGGACAACCTCTTTCGC+TGG - chr5_2:7536925-7536944 Msa0753940:CDS 55.0%
GGCAGCAGGACCATCAACTT+TGG + chr5_2:7537539-7537558 None:intergenic 55.0%
GTGAGGATGTCATAGGCAGC+AGG + chr5_2:7537553-7537572 None:intergenic 55.0%
CGAGGAGACTTGGCATGTTC+AGG - chr5_2:7537717-7537736 Msa0753940:intron 55.0%
GGTACACCTTCAGGCCACAT+AGG + chr5_2:7538471-7538490 None:intergenic 55.0%
CCGCTGAGTAGCTGTACTTG+AGG + chr5_2:7538493-7538512 None:intergenic 55.0%
AAACCTCATGGCCAGGTGCA+TGG - chr5_2:7539151-7539170 Msa0753940:CDS 55.0%
TAACCATGCACCTGGCCATG+AGG + chr5_2:7539157-7539176 None:intergenic 55.0%
CCTAGGCAATCGCGAGCTCT+CGG - chr5_2:7538783-7538802 Msa0753940:CDS 60.0%
CCGAGAGCTCGCGATTGCCT+AGG + chr5_2:7538786-7538805 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7535149 7539459 7535149 ID=Msa0753940;Name=Msa0753940
chr5_2 mRNA 7535149 7539459 7535149 ID=Msa0753940-mRNA-1;Parent=Msa0753940;Name=Msa0753940-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.25|0.11|1|1|1|9|0|848
chr5_2 exon 7538509 7539459 7538509 ID=Msa0753940-mRNA-1:exon:3423;Parent=Msa0753940-mRNA-1
chr5_2 exon 7538258 7538374 7538258 ID=Msa0753940-mRNA-1:exon:3422;Parent=Msa0753940-mRNA-1
chr5_2 exon 7537240 7537434 7537240 ID=Msa0753940-mRNA-1:exon:3421;Parent=Msa0753940-mRNA-1
chr5_2 exon 7536870 7537118 7536870 ID=Msa0753940-mRNA-1:exon:3420;Parent=Msa0753940-mRNA-1
chr5_2 exon 7536706 7536774 7536706 ID=Msa0753940-mRNA-1:exon:3419;Parent=Msa0753940-mRNA-1
chr5_2 exon 7536457 7536604 7536457 ID=Msa0753940-mRNA-1:exon:3418;Parent=Msa0753940-mRNA-1
chr5_2 exon 7536081 7536229 7536081 ID=Msa0753940-mRNA-1:exon:3417;Parent=Msa0753940-mRNA-1
chr5_2 exon 7535750 7535926 7535750 ID=Msa0753940-mRNA-1:exon:3416;Parent=Msa0753940-mRNA-1
chr5_2 exon 7535149 7535640 7535149 ID=Msa0753940-mRNA-1:exon:3415;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7538509 7539459 7538509 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7538258 7538374 7538258 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7537240 7537434 7537240 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7536870 7537118 7536870 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7536706 7536774 7536706 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7536457 7536604 7536457 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7536081 7536229 7536081 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7535750 7535926 7535750 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
chr5_2 CDS 7535149 7535640 7535149 ID=Msa0753940-mRNA-1:cds;Parent=Msa0753940-mRNA-1
Gene Sequence

>Msa0753940

ATGGCTCATTTGGTTTATGGTGAAACTCCATCTTTTGGAAACTCAACCCATGGCCAAGGTCAACAACTTGTTCCATTTCCAACCACTTCCAGTTCCTTAAGGATCCTACTCTTACATGGAAACTTAGAAATTTGCATTCAAGAGGCCAAAAACCTTCCTAACATGGACACTTTTCACAAGAACCTGGGGGCAATGCTTTCAATCCTACCTAAAAAACTTGGTAACAAAATGAACCAAACCAGTGATCCATATGTCACAGTTTCTGTGGCTGGTGCTGTGATTGCAAGAACTTTTGTGATCAGAAATGATGAGAACCCTGTTTGGATGCAACATTTTAATGTACCTGTTGCACATCAAGCATCAGAGATTCACTTTGTTGTAAAAGACAGTGATATTGTTGGTTCACAGCTTATTGGTGCAGTTGGAATTCCAGTTGAAAAGTTATGTGATGGTGCAAAAGTTGAAGGCTTTTTCCCCATTCTGAATACTAATGGAAAACCCTTCAAGACTGAAACCGTTTTGAGCTTATCTATTCAGTATACTCCTATTCATAAGGTAGCCCTTTATAACAATGGTGTTGGTGGTGATTTTCAAGGTGTTCCTGCTACATATTTTCCACTTAGAAAAGGTGGAAAAGTTACTCTTTATCAAGATGCTCATGTTCCACAAGGTTGTCTTCCTGGTTTGAGGGTTGATGGTAGTGATCATGATGTGAGTTATGAGAGTGGAAATTGTTGGCATGATATCTTTGATGCAATAAGTCAGGCACGTCGATTGGTCTATATCGTTGGTTGGTCCGTGTACTACAATGTTAGTCTCATTAGGGATACTAGAGATGGAAAAGATTGTACATTAGGTGATCTTCTCAAAGCCAAATCACAAGAAGGTGTGAGAGTGCTTCTACTTGTGTGGGATGATCCTACTTCTAAAAGCATGTTTGGATATAAAACGGTTGGACTTATGAACACTTATGACGAGGAAACTCGCAGTTTTTTCAAGCACTCTTCAGTTAAGGTGCTTCTTTGCCCAAGATCTGGAGGAAAAGGACATAGCTGGCTCAAACAGCAGGAAGCTGGAACAATCTATACTCATCATCAGAAGACAGTCATTGTGGATGCTGATGCTGGTCAGCATAAAAGAAAGATTGTAGCTTTCATTGGAGGTCTTGATTTATGTCTCGGAAGATATGATACTCCAACACATTCTCTCTTTAGGACTTTGCAGACAACGCACAAAGATGACTTTCATAATCCTAACTACGAGGGTTCTGTTACTGGTTGTCCAAGACAACCATGGCATGATTTACATTCCAAAGTTGATGGTCCTGCTGCCTATGACATCCTCACCAATTTTGAGGAGCGTTGGTTGATGGCATTAAAAATGACTACACTTCAAAAGATGAAAACTTCACATGATGATTCGTTACTGAAAATTGACAGAATCTCTGACATTATTGGCATTGATGACGTACCTTGCCTTGATGAACATAACGAGGAGACTTGGCATGTTCAGATTTTCCGTTCGATTGATTCCAATTCTGTGAAAGGATTTCCAAAAGAACCGAAAGAGGCTATACAAAGGAACTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAAGCAATCAGAGCAGCTCAGAAGTTCATATATATTGAGAATCAATATTTTCTTGGCTCATCATATAATTGGGATTCTTACAAAGACCTCGGTGCAAACAATTTAATTCCAATGGAAATTGCTCTAAAGATAGCAAACAAAATCAAACAGAAAGAGAGATTCTGTGTGTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCCTCAAGTACAGCTACTCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGGAACAATTTACAAAGCCTTAGAGGAAGCTGGACTTGAAAATGAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTAGGCAATCGCGAGCTCTCGGATAATGAAAATATTTCAAATGGTGTAAAATCTAACGGAAAAAACACTCCTCAGGCACTTACTAAAAAGAACAGAAGATTCATGATATATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTAATGGGATCTGCCAACATAAACCAGAGATCCATGGAAGGCACTAGAGACACAGAAATTGCAATGGGAGCATATCAGCCTAATCATACTTGGGCAACCAAGCATTCTAAACCTCATGGCCAGGTGCATGGTTATAGAATGTCATTGTGGAGTGAACACATAGGAGGTGTGGAAGAATGTTTCAAGCAACCAGAGAGCATTGAATGTGTGAGAAGAATAAGGTCATTGAGTGAGTATAACTGGAGACAATATTTGGCTGATGAAGTAACTGAAATGAATGGTCATTTACTGAAATACCCACTTGAAGTTGATTCAAAGGGTATTGTGAAGCCTCTTGTTGGCTGTGAAACATTCCCTGATGTTGGTGGAAACATAAAAGGCACCTTTACTGTACTTCAAGAAAATCTCACCATCTAA
Protein sequence

>Msa0753940

MAHLVYGETPSFGNSTHGQGQQLVPFPTTSSSLRILLLHGNLEICIQEAKNLPNMDTFHKNLGAMLSILPKKLGNKMNQTSDPYVTVSVAGAVIARTFVIRNDENPVWMQHFNVPVAHQASEIHFVVKDSDIVGSQLIGAVGIPVEKLCDGAKVEGFFPILNTNGKPFKTETVLSLSIQYTPIHKVALYNNGVGGDFQGVPATYFPLRKGGKVTLYQDAHVPQGCLPGLRVDGSDHDVSYESGNCWHDIFDAISQARRLVYIVGWSVYYNVSLIRDTRDGKDCTLGDLLKAKSQEGVRVLLLVWDDPTSKSMFGYKTVGLMNTYDEETRSFFKHSSVKVLLCPRSGGKGHSWLKQQEAGTIYTHHQKTVIVDADAGQHKRKIVAFIGGLDLCLGRYDTPTHSLFRTLQTTHKDDFHNPNYEGSVTGCPRQPWHDLHSKVDGPAAYDILTNFEERWLMALKMTTLQKMKTSHDDSLLKIDRISDIIGIDDVPCLDEHNEETWHVQIFRSIDSNSVKGFPKEPKEAIQRNLVCGKNVMIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIANKIKQKERFCVYIVIPMWPEGVPSSTATQRILFWQFKTMQMMYGTIYKALEEAGLENEYEPQDYLNFFCLGNRELSDNENISNGVKSNGKNTPQALTKKNRRFMIYVHSKGMIVDDEYVLMGSANINQRSMEGTRDTEIAMGAYQPNHTWATKHSKPHGQVHGYRMSLWSEHIGGVEECFKQPESIECVRRIRSLSEYNWRQYLADEVTEMNGHLLKYPLEVDSKGIVKPLVGCETFPDVGGNIKGTFTVLQENLTI*