AlfalfaGEDB | Msa0760240

M. sativa cultivar zhongmu-4 / Msa0760240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760240	XP_003612555.1	99.048	420	4	0	1	420	1	420	0.0	867

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760240	sp\|Q9SY91\|PBL15_ARATH	78.329	383	81	2	10	390	16	398	0.0	651

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760240	G7K5G3	99.048	420	4	0	1	420	1	420	0.0	867

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0760170	Msa0760240	0.974398	4.382610e-138	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760240	MtrunA17_Chr5g0408941	99.048	420	4	0	1	420	1	420	0.0	867
Msa0760240	MtrunA17_Chr4g0070411	58.209	402	154	5	10	407	5	396	1.49e-167	480
Msa0760240	MtrunA17_Chr2g0300711	60.705	369	133	4	13	379	9	367	1.15e-157	456
Msa0760240	MtrunA17_Chr1g0150741	60.976	369	141	3	14	379	3	371	1.80e-155	444
Msa0760240	MtrunA17_Chr3g0136421	62.606	353	128	4	31	379	19	371	5.44e-155	443
Msa0760240	MtrunA17_Chr7g0245571	65.432	324	108	2	53	372	49	372	6.06e-153	440
Msa0760240	MtrunA17_Chr5g0416011	58.333	360	143	4	58	412	104	461	2.52e-143	417
Msa0760240	MtrunA17_Chr8g0362661	57.064	361	147	4	58	412	102	460	1.79e-142	415
Msa0760240	MtrunA17_Chr4g0064201	54.737	380	153	3	32	392	35	414	7.51e-142	412
Msa0760240	MtrunA17_Chr7g0216551	56.267	359	148	5	61	412	94	450	1.94e-140	409

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760240	AT1G61590.1	78.329	383	81	2	10	390	16	398	0.0	651
Msa0760240	AT2G05940.1	63.978	372	127	5	10	379	9	375	1.08e-167	479
Msa0760240	AT5G35580.2	59.892	369	142	3	10	376	9	373	1.79e-155	449
Msa0760240	AT5G35580.1	62.286	350	130	2	29	376	12	361	1.84e-155	449
Msa0760240	AT5G01020.1	64.848	330	112	3	53	379	29	357	2.62e-155	445
Msa0760240	AT2G26290.1	62.575	334	122	3	43	373	37	370	1.49e-151	436
Msa0760240	AT5G15080.1	61.890	328	119	3	58	381	110	435	2.47e-142	415
Msa0760240	AT3G28690.1	56.497	354	145	3	71	420	5	353	3.33e-140	405
Msa0760240	AT3G28690.3	56.497	354	145	3	71	420	54	402	5.39e-140	407
Msa0760240	AT3G28690.2	56.497	354	145	3	71	420	105	453	2.55e-139	407

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Find 70 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTCTATAGCTT+CGG	0.483535	5_2:-16661373	Msa0760240:CDS
AAAGACGGAACAAAACATTG+TGG	0.700509	5_2:-16661296	Msa0760240:CDS
AAATGTTTCATCTAATAATA+AGG	0.312610	5_2:-16661029	Msa0760240:CDS
AACCATCAAATTCAAAACCA+TGG	0.557745	5_2:-16663109	Msa0760240:CDS
AAGGATATGGCTGTTACTAG+TGG	0.565944	5_2:-16661082	Msa0760240:CDS
AATGAGAGTCTCCTAAAAGA+TGG	0.538027	5_2:+16662978	None:intergenic
AATTTCTTGCTTGGTGAAGG+TGG	0.512398	5_2:-16662834	Msa0760240:CDS
ACAGCAAAATTATCAGATTT+TGG	0.166621	5_2:-16661638	Msa0760240:CDS
ACATGTGACTTTGATCCTTC+TGG	0.325882	5_2:+16661599	None:intergenic
ACATGTTACAACCAGAGTTA+TGG	0.418194	5_2:-16661582	Msa0760240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATCAAATTCAAAACCA+TGG	-	chr5_2:16660971-16660990	Msa0760240:CDS	30.0%
TTAGAATAATCTGAACGTGA+AGG	+	chr5_2:16661066-16661085	None:intergenic	30.0%
TTGGATATTGAAGGTTTACA+AGG	-	chr5_2:16661348-16661367	Msa0760240:CDS	30.0%
ACCGAACAAAATAGTTAAAC+CGG	-	chr5_2:16661434-16661453	Msa0760240:intron	30.0%
GTTATTGCTTAAAGAGTCAT+TGG	-	chr5_2:16661632-16661651	Msa0760240:CDS	30.0%
TATTGAATTGCATGCTTTAC+AGG	-	chr5_2:16661894-16661913	Msa0760240:CDS	30.0%
CAATCAATTTCACCAAATTG+GGG	+	chr5_2:16661951-16661970	None:intergenic	30.0%
CCAATCAATTTCACCAAATT+GGG	+	chr5_2:16661952-16661971	None:intergenic	30.0%
TCCAATCAATTTCACCAAAT+TGG	+	chr5_2:16661953-16661972	None:intergenic	30.0%
CAATAACATGTAATGATCTG+AGG	+	chr5_2:16662115-16662134	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	16660964	16663138	16660964	ID=Msa0760240;Name=Msa0760240
chr5_2	mRNA	16660964	16663138	16660964	ID=Msa0760240-mRNA-1;Parent=Msa0760240;Name=Msa0760240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|1\|0.6\|1\|1\|1\|5\|0\|420
chr5_2	exon	16662716	16663138	16662716	ID=Msa0760240-mRNA-1:exon:7355;Parent=Msa0760240-mRNA-1
chr5_2	exon	16662051	16662186	16662051	ID=Msa0760240-mRNA-1:exon:7354;Parent=Msa0760240-mRNA-1
chr5_2	exon	16661831	16661964	16661831	ID=Msa0760240-mRNA-1:exon:7353;Parent=Msa0760240-mRNA-1
chr5_2	exon	16661543	16661666	16661543	ID=Msa0760240-mRNA-1:exon:7352;Parent=Msa0760240-mRNA-1
chr5_2	exon	16660964	16661409	16660964	ID=Msa0760240-mRNA-1:exon:7351;Parent=Msa0760240-mRNA-1
chr5_2	CDS	16662716	16663138	16662716	ID=Msa0760240-mRNA-1:cds;Parent=Msa0760240-mRNA-1
chr5_2	CDS	16662051	16662186	16662051	ID=Msa0760240-mRNA-1:cds;Parent=Msa0760240-mRNA-1
chr5_2	CDS	16661831	16661964	16661831	ID=Msa0760240-mRNA-1:cds;Parent=Msa0760240-mRNA-1
chr5_2	CDS	16661543	16661666	16661543	ID=Msa0760240-mRNA-1:cds;Parent=Msa0760240-mRNA-1
chr5_2	CDS	16660964	16661409	16660964	ID=Msa0760240-mRNA-1:cds;Parent=Msa0760240-mRNA-1

Gene Sequence

>Msa0760240

ATGAAGGAACCATCAAATTCAAAACCATGGAGACCATTCACATCAAATTGTTGCACAACTGAAAACCAAACAATATTAAGAAACTTTAGTAAATGCAAGCCTTCACGTTCAGATTATTCTAAGAACATTGCTCCTTTACCATCTTTTAGGAGACTCTCATTTTCTGATCTTAGCCGTTCGTCTTCAACGCGAATCAATGAAGATCTTGCACTGTCTTTTGGTTCTGATTTGTTTGATTTTCAGATGAGTGAACTTCGTGCTATCACTCAGAATTTTTCTAGTAATTTCTTGCTTGGTGAAGGTGGTTTTGGAACTGTTCATAAGGGTTATTTTGATGATAATTTTAGACAAGGTTTGAAGGCTCAACCTGTTGCTGTTAAACTTTTGGATATTGAAGGTTTACAAGGACATCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTGAAATTGATTGGATATTGTTGTGAAGATGAAGAAAGACTACTTGTCTATGAATTCATGCCAAGAGGAAGCTTGGAGAATCACTTGTTTAGAAGACTAACATCACTACCTTGGGCTACAAGAATAAAAATTGCAATAGGTGCTGCTAAAGGCCTTTCTTTTTTGCATGGAGCTGAGAAACCAGTCATTTATAGGGATTTCAAGACTTCCAATGTCTTACTTGATTCAGACTTCACAGCAAAATTATCAGATTTTGGACTTGCAAAGATGGGGCCAGAAGGATCAAAGTCACATGTTACAACCAGAGTTATGGGAACTTATGGATATGCAGCCCCAGAGTACATCTCAACAGGTCACTTGACTACAAAAAGTGATGTCTATAGCTTCGGCGTAGTCCTGCTAGAACTACTAACAGGAAGAAGAGCGACAGACAAAACAAGACCAAAGACGGAACAAAACATTGTGGATTGGACAAAGCCTTACTTGAGTAGCAGTAGAAGATTGAGGTACATTATGGATCCAAGGCTTGCAGGACAATATTCTGTGAAAGGAGCAAAAGAGATTGCACATTTGGCATTACAATGCATAAGTTTGCATCCTAAAGACAGACCAAGAATGGCTATGATTGTTGAAACACTTGGAAGCCTGGAACAGTTTAAGGATATGGCTGTTACTAGTGGACACTGGCCAATATCATCAAAATCTACTAAAAATGTTTCATCTAATAATAAGGTGAAAGCTAGAGCAATTAGTGTAAACCAGAAGCAACAGGTTCCAGTTAAGAGCATAAAGACTTGA

Protein sequence

>Msa0760240

MKEPSNSKPWRPFTSNCCTTENQTILRNFSKCKPSRSDYSKNIAPLPSFRRLSFSDLSRSSSTRINEDLALSFGSDLFDFQMSELRAITQNFSSNFLLGEGGFGTVHKGYFDDNFRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWATRIKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLGSLEQFKDMAVTSGHWPISSKSTKNVSSNNKVKARAISVNQKQQVPVKSIKT*