Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763200 | XP_003612774.2 | 94.323 | 229 | 11 | 1 | 24 | 250 | 174 | 402 | 8.31e-152 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763200 | sp|Q501B2|BZP16_ARATH | 53.846 | 234 | 88 | 6 | 20 | 244 | 177 | 399 | 4.65e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763200 | G7KB04 | 94.323 | 229 | 11 | 1 | 24 | 250 | 174 | 402 | 3.97e-152 | 439 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0763200 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0763200 | Msa1407190 | 0.801356 | 9.358179e-49 | -8.615850e-47 |
| Msa0763200 | Msa1432130 | 0.806177 | 9.335734e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763200 | MtrunA17_Chr5g0410531 | 94.323 | 229 | 11 | 1 | 24 | 250 | 174 | 402 | 7.65e-156 | 439 |
| Msa0763200 | MtrunA17_Chr8g0369161 | 72.444 | 225 | 49 | 3 | 24 | 238 | 176 | 397 | 1.24e-106 | 313 |
| Msa0763200 | MtrunA17_Chr8g0373571 | 49.315 | 146 | 60 | 4 | 84 | 225 | 192 | 327 | 7.85e-32 | 119 |
| Msa0763200 | MtrunA17_Chr7g0275321 | 38.071 | 197 | 102 | 5 | 31 | 225 | 170 | 348 | 9.94e-30 | 115 |
| Msa0763200 | MtrunA17_Chr8g0347741 | 37.281 | 228 | 88 | 7 | 31 | 246 | 174 | 358 | 2.47e-26 | 105 |
| Msa0763200 | MtrunA17_Chr7g0225661 | 39.362 | 94 | 52 | 2 | 130 | 223 | 59 | 147 | 4.41e-12 | 63.2 |
| Msa0763200 | MtrunA17_Chr8g0341311 | 37.383 | 107 | 58 | 3 | 121 | 223 | 36 | 137 | 3.44e-11 | 60.5 |
| Msa0763200 | MtrunA17_Chr1g0162721 | 34.783 | 92 | 58 | 1 | 136 | 225 | 198 | 289 | 6.55e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763200 | AT2G35530.1 | 53.846 | 234 | 88 | 6 | 20 | 244 | 177 | 399 | 4.73e-71 | 223 |
| Msa0763200 | AT1G32150.1 | 55.155 | 194 | 58 | 8 | 39 | 229 | 199 | 366 | 6.50e-54 | 179 |
| Msa0763200 | AT4G36730.2 | 47.154 | 123 | 34 | 1 | 103 | 225 | 196 | 287 | 2.00e-26 | 104 |
| Msa0763200 | AT4G36730.1 | 47.154 | 123 | 34 | 1 | 103 | 225 | 198 | 289 | 2.29e-26 | 104 |
| Msa0763200 | AT2G46270.1 | 56.962 | 79 | 34 | 0 | 147 | 225 | 248 | 326 | 3.27e-22 | 94.4 |
| Msa0763200 | AT2G46270.3 | 56.962 | 79 | 34 | 0 | 147 | 225 | 248 | 326 | 3.27e-22 | 94.4 |
| Msa0763200 | AT2G46270.2 | 57.746 | 71 | 30 | 0 | 155 | 225 | 233 | 303 | 1.20e-18 | 84.3 |
| Msa0763200 | AT2G46270.4 | 57.746 | 71 | 30 | 0 | 155 | 225 | 233 | 303 | 1.20e-18 | 84.3 |
| Msa0763200 | AT4G01120.1 | 51.899 | 79 | 36 | 1 | 150 | 228 | 243 | 319 | 2.09e-17 | 80.9 |
Find 88 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGCTCCTGGAGCTGTTTC+TGG | 0.143125 | 5_2:+22078490 | Msa0763200:CDS |
| TAAATATAGGAATGGATTAT+TGG | 0.223124 | 5_2:+22078527 | Msa0763200:CDS |
| AGTTTGCCATTTGCAAATTC+TGG | 0.240329 | 5_2:+22077953 | Msa0763200:CDS |
| GTTGCGGGAGGGGTGGTTAC+TGG | 0.250650 | 5_2:+22078607 | Msa0763200:CDS |
| TTTATGCTGATTGGTATTCT+TGG | 0.257973 | 5_2:+22077979 | Msa0763200:CDS |
| AGGATCATATACTGCATTTC+GGG | 0.276345 | 5_2:+22080576 | Msa0763200:exon |
| AAAGACGAAAGCAGTCTAAT+AGG | 0.280364 | 5_2:+22079711 | Msa0763200:CDS |
| TAGGATCATATACTGCATTT+CGG | 0.320801 | 5_2:+22080575 | Msa0763200:exon |
| CACGCTCTTGCTATTGAGTT+AGG | 0.324581 | 5_2:-22080606 | None:intergenic |
| TTCTGGCAATTTATGCTGAT+TGG | 0.343050 | 5_2:+22077970 | Msa0763200:CDS |
| CCTATATTTAAGTTTGTTGC+GGG | 0.356569 | 5_2:-22078514 | None:intergenic |
| TACCTTGAGAGCTGCATTCT+CGG | 0.363000 | 5_2:-22079968 | None:intergenic |
| GGTTAAAAGTAAGACAAATT+AGG | 0.372590 | 5_2:-22080724 | None:intergenic |
| ATAGGGCTCTCAATTGAAAT+CGG | 0.373544 | 5_2:+22078212 | Msa0763200:intron |
| CAAGAGCGTGATCTTTGTTT+CGG | 0.376014 | 5_2:+22080619 | Msa0763200:three_prime_UTR |
| GGTTGTGCAGGGTGGTCATT+AGG | 0.383561 | 5_2:+22080556 | Msa0763200:CDS |
| GGAGCACCACTTGCCGAGAT+AGG | 0.387899 | 5_2:-22078475 | None:intergenic |
| ACAGGTGAACCATCTCAAAA+TGG | 0.390659 | 5_2:+22078376 | Msa0763200:intron |
| GCCTACCACAGTTGCGGGAG+GGG | 0.400697 | 5_2:+22078597 | Msa0763200:CDS |
| ATCTCGGCAAGTGGTGCTCC+TGG | 0.408534 | 5_2:+22078478 | Msa0763200:CDS |
| CGTCACCTGCTTGCGCAACC+TGG | 0.412809 | 5_2:-22079750 | None:intergenic |
| AAGACGAAAGCAGTCTAATA+GGG | 0.416680 | 5_2:+22079712 | Msa0763200:CDS |
| GTTCCGCCTACCACAGTTGC+GGG | 0.416901 | 5_2:+22078592 | Msa0763200:CDS |
| TAATGCGATTTACTTCTAAT+CGG | 0.420402 | 5_2:-22079921 | None:intergenic |
| TTCTGTATAAATAATTAGTC+GGG | 0.426906 | 5_2:+22080873 | Msa0763200:three_prime_UTR |
| GATTAGAAGTAAATCGCATT+AGG | 0.437599 | 5_2:+22079923 | Msa0763200:CDS |
| CCCGCAACAAACTTAAATAT+AGG | 0.444449 | 5_2:+22078514 | Msa0763200:CDS |
| TAGGGCTCTCAATTGAAATC+GGG | 0.448319 | 5_2:+22078213 | Msa0763200:intron |
| GGCAAACTAATGTACTCAAC+AGG | 0.455599 | 5_2:-22077938 | None:intergenic |
| GGGAATCTGCTCGGAGATCC+AGG | 0.457769 | 5_2:+22079732 | Msa0763200:CDS |
| TCCTATATTTAAGTTTGTTG+CGG | 0.459038 | 5_2:-22078515 | None:intergenic |
| TTAATCTACAGGAGAGACTT+GGG | 0.468089 | 5_2:+22080480 | Msa0763200:intron |
| CAGTGCATACTTCACAAAAC+GGG | 0.474326 | 5_2:+22078404 | Msa0763200:CDS |
| TCAGTGCATACTTCACAAAA+CGG | 0.475143 | 5_2:+22078403 | Msa0763200:CDS |
| GGAACCTTTCCGCGGAGAGC+TGG | 0.479151 | 5_2:-22078574 | None:intergenic |
| TTTAATCTACAGGAGAGACT+TGG | 0.481648 | 5_2:+22080479 | Msa0763200:intron |
| TATGTCTGTCATTCCTATCT+CGG | 0.487110 | 5_2:+22078462 | Msa0763200:CDS |
| TCAGTCACAACTTTGGCTAC+AGG | 0.487817 | 5_2:+22078648 | Msa0763200:CDS |
| GTTTGATTAACCACTGTATG+AGG | 0.491464 | 5_2:-22078439 | None:intergenic |
| TGGACAGACAGAGGTTGTGC+AGG | 0.495031 | 5_2:+22080544 | Msa0763200:CDS |
| GGGTGGTTACTGGTGGATCA+CGG | 0.495283 | 5_2:+22078617 | Msa0763200:CDS |
| AGTAAGACAAATTAGGAATG+AGG | 0.496924 | 5_2:-22080717 | None:intergenic |
| TTTCTGTATAAATAATTAGT+CGG | 0.497348 | 5_2:+22080872 | Msa0763200:three_prime_UTR |
| AAATTGCCAGAATTTGCAAA+TGG | 0.500387 | 5_2:-22077959 | None:intergenic |
| GCGGGGCCAGAAACAGCTCC+AGG | 0.501668 | 5_2:-22078496 | None:intergenic |
| GGTGGTTACTGGTGGATCAC+GGG | 0.504171 | 5_2:+22078618 | Msa0763200:CDS |
| TCGGGAAAATAATGAAAAGA+AGG | 0.505244 | 5_2:+22080891 | Msa0763200:three_prime_UTR |
| TCGTTACACATGTGTTGATC+TGG | 0.509480 | 5_2:-22080509 | None:intergenic |
| GAGATCCAGGTTGCGCAAGC+AGG | 0.513179 | 5_2:+22079745 | Msa0763200:CDS |
| CGCCTACCACAGTTGCGGGA+GGG | 0.514482 | 5_2:+22078596 | Msa0763200:CDS |
| GGTGAAAGTGGAAGTTATGA+AGG | 0.527913 | 5_2:+22078011 | Msa0763200:CDS |
| GCGATTTACTTCTAATCGGA+GGG | 0.529909 | 5_2:-22079917 | None:intergenic |
| AGTTATGAAGGTACTAGTGA+AGG | 0.533947 | 5_2:+22078023 | Msa0763200:CDS |
| ATAGTGTTCAGTCACAACTT+TGG | 0.537639 | 5_2:+22078641 | Msa0763200:CDS |
| GTAAGACAAATTAGGAATGA+GGG | 0.540443 | 5_2:-22080716 | None:intergenic |
| TGCGATTTACTTCTAATCGG+AGG | 0.542152 | 5_2:-22079918 | None:intergenic |
| TACCACAGTTGCGGGAGGGG+TGG | 0.550163 | 5_2:+22078600 | Msa0763200:CDS |
| CCGCCTACCACAGTTGCGGG+AGG | 0.555210 | 5_2:+22078595 | Msa0763200:CDS |
| TTCCGAGAATGCAGCTCTCA+AGG | 0.555646 | 5_2:+22079966 | Msa0763200:CDS |
| TCCGCGGAGAGCTGGAATGT+TGG | 0.563596 | 5_2:-22078566 | None:intergenic |
| GCGGGAGGGGTGGTTACTGG+TGG | 0.570321 | 5_2:+22078610 | Msa0763200:CDS |
| ACCCCTCCCGCAACTGTGGT+AGG | 0.571144 | 5_2:-22078598 | None:intergenic |
| CATTCCAGCTCTCCGCGGAA+AGG | 0.573853 | 5_2:+22078570 | Msa0763200:CDS |
| TGGATTTGCAGTGGTGAAAG+TGG | 0.577589 | 5_2:+22077999 | Msa0763200:CDS |
| GCTGGAATGTTGGATGAAGT+TGG | 0.578954 | 5_2:-22078556 | None:intergenic |
| AGCAATATAATTAATGTACC+TGG | 0.580685 | 5_2:+22080832 | Msa0763200:three_prime_UTR |
| AACAAACTTAAATATAGGAA+TGG | 0.588482 | 5_2:+22078519 | Msa0763200:CDS |
| TGGTATTCTTGGATTTGCAG+TGG | 0.595903 | 5_2:+22077990 | Msa0763200:CDS |
| TAACCCCATTCAAAACAACA+TGG | 0.603445 | 5_2:+22080742 | Msa0763200:three_prime_UTR |
| AACCACCCCTCCCGCAACTG+TGG | 0.605113 | 5_2:-22078602 | None:intergenic |
| GTCATTCCTATCTCGGCAAG+TGG | 0.611010 | 5_2:+22078469 | Msa0763200:CDS |
| AGGGCTCTCAATTGAAATCG+GGG | 0.621854 | 5_2:+22078214 | Msa0763200:intron |
| GGTTCCGCCTACCACAGTTG+CGG | 0.633178 | 5_2:+22078591 | Msa0763200:CDS |
| TGTAACGACAGTCAACAAAG+TGG | 0.642893 | 5_2:+22080524 | Msa0763200:CDS |
| GGACAGACAGAGGTTGTGCA+GGG | 0.645924 | 5_2:+22080545 | Msa0763200:CDS |
| CCTCCCGCAACTGTGGTAGG+CGG | 0.645977 | 5_2:-22078595 | None:intergenic |
| GGGCTCTCAATTGAAATCGG+GGG | 0.646202 | 5_2:+22078215 | Msa0763200:intron |
| ACTTAATGCACCTCATACAG+TGG | 0.648863 | 5_2:+22078429 | Msa0763200:CDS |
| TAATCTACAGGAGAGACTTG+GGG | 0.650587 | 5_2:+22080481 | Msa0763200:intron |
| TCAACAAAGTGGACAGACAG+AGG | 0.662687 | 5_2:+22080535 | Msa0763200:CDS |
| CTATATTTAAGTTTGTTGCG+GGG | 0.664908 | 5_2:-22078513 | None:intergenic |
| AGTCTAATAGGGAATCTGCT+CGG | 0.674381 | 5_2:+22079723 | Msa0763200:CDS |
| AGTGCATACTTCACAAAACG+GGG | 0.677950 | 5_2:+22078405 | Msa0763200:CDS |
| TGGTAGGCGGAACCTTTCCG+CGG | 0.697382 | 5_2:-22078582 | None:intergenic |
| ATTTATATAATGAACACACC+AGG | 0.707482 | 5_2:-22080850 | None:intergenic |
| CAGACAGAGGTTGTGCAGGG+TGG | 0.709413 | 5_2:+22080548 | Msa0763200:CDS |
| TCCAACATTCCAGCTCTCCG+CGG | 0.711616 | 5_2:+22078565 | Msa0763200:CDS |
| GTGCATACTTCACAAAACGG+GGG | 0.753458 | 5_2:+22078406 | Msa0763200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGTAAAAAATTATTAATAA+TGG | - | chr5_2:22079629-22079648 | None:intergenic | 10.0% |
| !! | ATATAAATGTTTAAATAAAG+AGG | - | chr5_2:22079651-22079670 | None:intergenic | 10.0% |
| !!! | ATTTAAACATTTATATTTTC+TGG | + | chr5_2:22079655-22079674 | Msa0763200:intron | 10.0% |
| !!! | TTTTGTATTTGTGTTTTTAT+AGG | + | chr5_2:22078194-22078213 | Msa0763200:intron | 15.0% |
| !!! | TTTGTATTTGTGTTTTTATA+GGG | + | chr5_2:22078195-22078214 | Msa0763200:intron | 15.0% |
| !!! | ACTTATTTGAGTTTATTTAT+TGG | + | chr5_2:22080185-22080204 | Msa0763200:intron | 15.0% |
| !! | TTTCTGTATAAATAATTAGT+CGG | + | chr5_2:22080872-22080891 | Msa0763200:three_prime_UTR | 15.0% |
| !!! | TATGTTTTTTCAACTATCAT+AGG | + | chr5_2:22078171-22078190 | Msa0763200:intron | 20.0% |
| !! | GTGAAAATTAGAAACTATAT+TGG | - | chr5_2:22078288-22078307 | None:intergenic | 20.0% |
| !! | AACAAACTTAAATATAGGAA+TGG | + | chr5_2:22078519-22078538 | Msa0763200:CDS | 20.0% |
| !!! | TAAATATAGGAATGGATTAT+TGG | + | chr5_2:22078527-22078546 | Msa0763200:CDS | 20.0% |
| !!! | ACTAAAATACAACTTTTATG+AGG | - | chr5_2:22079152-22079171 | None:intergenic | 20.0% |
| !!! | AAAGTTGTATTTTAGTGAAT+AGG | + | chr5_2:22079156-22079175 | Msa0763200:intron | 20.0% |
| !! | TAATTCTAAATTTGTAAGTG+GGG | - | chr5_2:22079400-22079419 | None:intergenic | 20.0% |
| !! | GTAATTCTAAATTTGTAAGT+GGG | - | chr5_2:22079401-22079420 | None:intergenic | 20.0% |
| !! | AGTAATTCTAAATTTGTAAG+TGG | - | chr5_2:22079402-22079421 | None:intergenic | 20.0% |
| !!! | ATATTTTCTGGTTAACTTTT+AGG | + | chr5_2:22079667-22079686 | Msa0763200:intron | 20.0% |
| !!! | TGTATGCTTTTTTTGTTAAA+AGG | + | chr5_2:22080003-22080022 | Msa0763200:intron | 20.0% |
| !! | TGAACATTTACTAAAAAAAG+AGG | - | chr5_2:22080100-22080119 | None:intergenic | 20.0% |
| !! | GATGTTAAGTCAAATAATTA+TGG | - | chr5_2:22080455-22080474 | None:intergenic | 20.0% |
| !! | TTCTGTATAAATAATTAGTC+GGG | + | chr5_2:22080873-22080892 | Msa0763200:three_prime_UTR | 20.0% |
| !! | TACCTTTTCTATTGAATTAC+AGG | + | chr5_2:22078358-22078377 | Msa0763200:intron | 25.0% |
| !!! | TCCTATATTTAAGTTTGTTG+CGG | - | chr5_2:22078518-22078537 | None:intergenic | 25.0% |
| ! | TAATACAGTCACAATTTGAA+AGG | - | chr5_2:22078828-22078847 | None:intergenic | 25.0% |
| !! | AATACACTTGCTAAAAAACA+AGG | - | chr5_2:22078895-22078914 | None:intergenic | 25.0% |
| ! | TAGTATTGTACATGTATGTT+TGG | + | chr5_2:22079217-22079236 | Msa0763200:intron | 25.0% |
| ! | AGTATTGTACATGTATGTTT+GGG | + | chr5_2:22079218-22079237 | Msa0763200:intron | 25.0% |
| !!! | TTAAGGTTTTAATAGCTTGT+AGG | + | chr5_2:22079491-22079510 | Msa0763200:intron | 25.0% |
| !! | ACATTGCAAGTTATTGATTA+TGG | - | chr5_2:22079562-22079581 | None:intergenic | 25.0% |
| ! | TAATGCGATTTACTTCTAAT+CGG | - | chr5_2:22079924-22079943 | None:intergenic | 25.0% |
| ! | AGGAATGAAAAGTTTAAAGA+AGG | + | chr5_2:22080023-22080042 | Msa0763200:intron | 25.0% |
| ! | GGAATGAAAAGTTTAAAGAA+GGG | + | chr5_2:22080024-22080043 | Msa0763200:intron | 25.0% |
| ! | TTATAAGAAATGATAGATCC+TGG | - | chr5_2:22080301-22080320 | None:intergenic | 25.0% |
| ! | ATATTAAGGAAATCTACGAA+TGG | - | chr5_2:22080421-22080440 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAATATGTGA+AGG | + | chr5_2:22080425-22080444 | Msa0763200:intron | 25.0% |
| ! | AACATCAAGATTTAATCTAC+AGG | + | chr5_2:22080469-22080488 | Msa0763200:intron | 25.0% |
| !!! | GGTCTTTTTAAGACTATAAT+AGG | - | chr5_2:22080677-22080696 | None:intergenic | 25.0% |
| ! | GGATCATATAACATAAAAAC+AGG | - | chr5_2:22080698-22080717 | None:intergenic | 25.0% |
| ! | GGTTAAAAGTAAGACAAATT+AGG | - | chr5_2:22080727-22080746 | None:intergenic | 25.0% |
| ! | AGCAATATAATTAATGTACC+TGG | + | chr5_2:22080832-22080851 | Msa0763200:three_prime_UTR | 25.0% |
| ! | ATTTATATAATGAACACACC+AGG | - | chr5_2:22080853-22080872 | None:intergenic | 25.0% |
| AAATTGCCAGAATTTGCAAA+TGG | - | chr5_2:22077962-22077981 | None:intergenic | 30.0% | |
| ! | TTTATGCTGATTGGTATTCT+TGG | + | chr5_2:22077979-22077998 | Msa0763200:CDS | 30.0% |
| TTCTAACACACATACATCAT+GGG | - | chr5_2:22078329-22078348 | None:intergenic | 30.0% | |
| CACCTGTAATTCAATAGAAA+AGG | - | chr5_2:22078363-22078382 | None:intergenic | 30.0% | |
| !! | CTATATTTAAGTTTGTTGCG+GGG | - | chr5_2:22078516-22078535 | None:intergenic | 30.0% |
| !! | CCTATATTTAAGTTTGTTGC+GGG | - | chr5_2:22078517-22078536 | None:intergenic | 30.0% |
| AAAGCATAAACATCATTGGT+CGG | - | chr5_2:22078690-22078709 | None:intergenic | 30.0% | |
| ! | ATCGAAAGCATAAACATCAT+TGG | - | chr5_2:22078694-22078713 | None:intergenic | 30.0% |
| TATGTTGAATGTAAGCAAGA+GGG | - | chr5_2:22078774-22078793 | None:intergenic | 30.0% | |
| AACATACCATGCTTTATGTT+TGG | + | chr5_2:22078788-22078807 | Msa0763200:intron | 30.0% | |
| ! | AATTACACACATTTTCATCG+AGG | + | chr5_2:22078920-22078939 | Msa0763200:intron | 30.0% |
| AAATGGTGTGTTTATATGGT+GGG | - | chr5_2:22078970-22078989 | None:intergenic | 30.0% | |
| AAAATGGTGTGTTTATATGG+TGG | - | chr5_2:22078971-22078990 | None:intergenic | 30.0% | |
| GACAAAATGGTGTGTTTATA+TGG | - | chr5_2:22078974-22078993 | None:intergenic | 30.0% | |
| ! | TAAACACACCATTTTGTCTA+TGG | + | chr5_2:22078976-22078995 | Msa0763200:intron | 30.0% |
| AGCTCATCAAAAATTGTCTA+TGG | + | chr5_2:22079011-22079030 | Msa0763200:intron | 30.0% | |
| ! | TGATAATCAGTGCTGTTAAA+TGG | - | chr5_2:22079081-22079100 | None:intergenic | 30.0% |
| TGTGACACTTATTAAAAGCT+TGG | + | chr5_2:22079189-22079208 | Msa0763200:intron | 30.0% | |
| GTATTGTACATGTATGTTTG+GGG | + | chr5_2:22079219-22079238 | Msa0763200:intron | 30.0% | |
| TGTGAAGTTATGTTTGTCAT+TGG | + | chr5_2:22079261-22079280 | Msa0763200:intron | 30.0% | |
| ! | TTCATGTTTTTCTTTTTCCG+AGG | + | chr5_2:22079344-22079363 | Msa0763200:intron | 30.0% |
| AAAACTTCTCTATCTGAGAA+AGG | - | chr5_2:22079457-22079476 | None:intergenic | 30.0% | |
| ! | TTCTCAGATAGAGAAGTTTT+AGG | + | chr5_2:22079457-22079476 | Msa0763200:intron | 30.0% |
| TTTAGGTAATCCACAGTTTA+AGG | + | chr5_2:22079474-22079493 | Msa0763200:intron | 30.0% | |
| GCTATTAAAACCTTAAACTG+TGG | - | chr5_2:22079487-22079506 | None:intergenic | 30.0% | |
| GATTAGAAGTAAATCGCATT+AGG | + | chr5_2:22079923-22079942 | Msa0763200:CDS | 30.0% | |
| ! | ACTACATTTGATTGTCGATT+CGG | + | chr5_2:22080138-22080157 | Msa0763200:intron | 30.0% |
| AAGTACTTGTGAGAATGTAA+GGG | + | chr5_2:22080211-22080230 | Msa0763200:intron | 30.0% | |
| TAGGATCATATACTGCATTT+CGG | + | chr5_2:22080575-22080594 | Msa0763200:exon | 30.0% | |
| GTAAGACAAATTAGGAATGA+GGG | - | chr5_2:22080719-22080738 | None:intergenic | 30.0% | |
| AGTAAGACAAATTAGGAATG+AGG | - | chr5_2:22080720-22080739 | None:intergenic | 30.0% | |
| !!! | TGATCCATGTTGTTTTGAAT+GGG | - | chr5_2:22080749-22080768 | None:intergenic | 30.0% |
| !!! | ATGATCCATGTTGTTTTGAA+TGG | - | chr5_2:22080750-22080769 | None:intergenic | 30.0% |
| TCGGGAAAATAATGAAAAGA+AGG | + | chr5_2:22080891-22080910 | Msa0763200:three_prime_UTR | 30.0% | |
| ! | AGTTTGCCATTTGCAAATTC+TGG | + | chr5_2:22077953-22077972 | Msa0763200:CDS | 35.0% |
| TTCTGGCAATTTATGCTGAT+TGG | + | chr5_2:22077970-22077989 | Msa0763200:CDS | 35.0% | |
| !! | AGTTATGAAGGTACTAGTGA+AGG | + | chr5_2:22078023-22078042 | Msa0763200:CDS | 35.0% |
| AACTAGTGCAAAAATGTGTG+TGG | - | chr5_2:22078118-22078137 | None:intergenic | 35.0% | |
| ATAGGGCTCTCAATTGAAAT+CGG | + | chr5_2:22078212-22078231 | Msa0763200:intron | 35.0% | |
| CTTCTAACACACATACATCA+TGG | - | chr5_2:22078330-22078349 | None:intergenic | 35.0% | |
| TCAGTGCATACTTCACAAAA+CGG | + | chr5_2:22078403-22078422 | Msa0763200:CDS | 35.0% | |
| GTTTGATTAACCACTGTATG+AGG | - | chr5_2:22078442-22078461 | None:intergenic | 35.0% | |
| TATGTCTGTCATTCCTATCT+CGG | + | chr5_2:22078462-22078481 | Msa0763200:CDS | 35.0% | |
| CCCGCAACAAACTTAAATAT+AGG | + | chr5_2:22078514-22078533 | Msa0763200:CDS | 35.0% | |
| ATAGTGTTCAGTCACAACTT+TGG | + | chr5_2:22078641-22078660 | Msa0763200:CDS | 35.0% | |
| ATGTTGAATGTAAGCAAGAG+GGG | - | chr5_2:22078773-22078792 | None:intergenic | 35.0% | |
| GTATGTTGAATGTAAGCAAG+AGG | - | chr5_2:22078775-22078794 | None:intergenic | 35.0% | |
| AAGTTGCCAAACATAAAGCA+TGG | - | chr5_2:22078797-22078816 | None:intergenic | 35.0% | |
| TCTTAGTGACAAATACTGAG+AGG | - | chr5_2:22078868-22078887 | None:intergenic | 35.0% | |
| !!! | GTGTTTATATGGTGGGTTTT+AGG | - | chr5_2:22078963-22078982 | None:intergenic | 35.0% |
| !! | AACAGCACTGATTATCATTG+AGG | + | chr5_2:22079084-22079103 | Msa0763200:intron | 35.0% |
| !!! | GACGAAGACTATTTTGACTT+AGG | + | chr5_2:22079115-22079134 | Msa0763200:intron | 35.0% |
| TCGATAAACACCTATTCCAA+GGG | - | chr5_2:22079312-22079331 | None:intergenic | 35.0% | |
| TTCGATAAACACCTATTCCA+AGG | - | chr5_2:22079313-22079332 | None:intergenic | 35.0% | |
| AATAAACAATGAGACAGCCT+CGG | - | chr5_2:22079364-22079383 | None:intergenic | 35.0% | |
| AAAGACGAAAGCAGTCTAAT+AGG | + | chr5_2:22079711-22079730 | Msa0763200:CDS | 35.0% | |
| AAGACGAAAGCAGTCTAATA+GGG | + | chr5_2:22079712-22079731 | Msa0763200:CDS | 35.0% | |
| GCAAACACTGAACGAAATAT+AGG | - | chr5_2:22079791-22079810 | None:intergenic | 35.0% | |
| AATTGTCACGTTTCTGATTC+CGG | + | chr5_2:22079819-22079838 | Msa0763200:intron | 35.0% | |
| TGAAAACAGCACATACAAAC+CGG | - | chr5_2:22079841-22079860 | None:intergenic | 35.0% | |
| CAAGTACTTGTGAGAATGTA+AGG | + | chr5_2:22080210-22080229 | Msa0763200:intron | 35.0% | |
| TCAAACAGAGCATAAATCGA+TGG | + | chr5_2:22080359-22080378 | Msa0763200:intron | 35.0% | |
| CAAACAGAGCATAAATCGAT+GGG | + | chr5_2:22080360-22080379 | Msa0763200:intron | 35.0% | |
| TGGTAAGCCTTCACATATTA+AGG | - | chr5_2:22080435-22080454 | None:intergenic | 35.0% | |
| TTTAATCTACAGGAGAGACT+TGG | + | chr5_2:22080479-22080498 | Msa0763200:intron | 35.0% | |
| TTAATCTACAGGAGAGACTT+GGG | + | chr5_2:22080480-22080499 | Msa0763200:intron | 35.0% | |
| AGGATCATATACTGCATTTC+GGG | + | chr5_2:22080576-22080595 | Msa0763200:exon | 35.0% | |
| TAACCCCATTCAAAACAACA+TGG | + | chr5_2:22080742-22080761 | Msa0763200:three_prime_UTR | 35.0% | |
| !!! | GATCCATGTTGTTTTGAATG+GGG | - | chr5_2:22080748-22080767 | None:intergenic | 35.0% |
| TGGTATTCTTGGATTTGCAG+TGG | + | chr5_2:22077990-22078009 | Msa0763200:CDS | 40.0% | |
| GGTGAAAGTGGAAGTTATGA+AGG | + | chr5_2:22078011-22078030 | Msa0763200:CDS | 40.0% | |
| GTAAGTTCTGTGACGTTCAT+CGG | + | chr5_2:22078068-22078087 | Msa0763200:intron | 40.0% | |
| TAGGGCTCTCAATTGAAATC+GGG | + | chr5_2:22078213-22078232 | Msa0763200:intron | 40.0% | |
| !! | GCTGGATTCTTTTGAAGGTT+TGG | + | chr5_2:22078242-22078261 | Msa0763200:intron | 40.0% |
| ACAGGTGAACCATCTCAAAA+TGG | + | chr5_2:22078376-22078395 | Msa0763200:intron | 40.0% | |
| !!! | ACTGAACTGCCATTTTGAGA+TGG | - | chr5_2:22078388-22078407 | None:intergenic | 40.0% |
| CAGTGCATACTTCACAAAAC+GGG | + | chr5_2:22078404-22078423 | Msa0763200:CDS | 40.0% | |
| AGTGCATACTTCACAAAACG+GGG | + | chr5_2:22078405-22078424 | Msa0763200:CDS | 40.0% | |
| ACTTAATGCACCTCATACAG+TGG | + | chr5_2:22078429-22078448 | Msa0763200:CDS | 40.0% | |
| ! | ATTTTCATCGAGGTAGTCGA+AGG | + | chr5_2:22078930-22078949 | Msa0763200:intron | 40.0% |
| ! | CAATTTTTGATGAGCTGCCA+TGG | - | chr5_2:22079007-22079026 | None:intergenic | 40.0% |
| !!! | TGTAGGAGTAGCTTTTTTCC+TGG | + | chr5_2:22079508-22079527 | Msa0763200:intron | 40.0% |
| !!! | GTAGGAGTAGCTTTTTTCCT+GGG | + | chr5_2:22079509-22079528 | Msa0763200:intron | 40.0% |
| !!! | TAGGAGTAGCTTTTTTCCTG+GGG | + | chr5_2:22079510-22079529 | Msa0763200:intron | 40.0% |
| AAACATGAGTTACATTCCCC+AGG | - | chr5_2:22079529-22079548 | None:intergenic | 40.0% | |
| AGTCTAATAGGGAATCTGCT+CGG | + | chr5_2:22079723-22079742 | Msa0763200:CDS | 40.0% | |
| !!! | GGTTTGTATGTGCTGTTTTC+AGG | + | chr5_2:22079840-22079859 | Msa0763200:intron | 40.0% |
| GCGATTTACTTCTAATCGGA+GGG | - | chr5_2:22079920-22079939 | None:intergenic | 40.0% | |
| TGCGATTTACTTCTAATCGG+AGG | - | chr5_2:22079921-22079940 | None:intergenic | 40.0% | |
| TAAAGAAGGGAACCCATGAA+AGG | + | chr5_2:22080037-22080056 | Msa0763200:intron | 40.0% | |
| AAAGAAGGGAACCCATGAAA+GGG | + | chr5_2:22080038-22080057 | Msa0763200:intron | 40.0% | |
| ! | CATAAATCGATGGGCTTAGA+TGG | + | chr5_2:22080369-22080388 | Msa0763200:intron | 40.0% |
| !! | CGAATGGTGTAGGTTTTAGT+TGG | - | chr5_2:22080405-22080424 | None:intergenic | 40.0% |
| AGGAAATCTACGAATGGTGT+AGG | - | chr5_2:22080415-22080434 | None:intergenic | 40.0% | |
| TAATCTACAGGAGAGACTTG+GGG | + | chr5_2:22080481-22080500 | Msa0763200:intron | 40.0% | |
| ! | TCGTTACACATGTGTTGATC+TGG | - | chr5_2:22080512-22080531 | None:intergenic | 40.0% |
| TGTAACGACAGTCAACAAAG+TGG | + | chr5_2:22080524-22080543 | Msa0763200:CDS | 40.0% | |
| ! | CAAGAGCGTGATCTTTGTTT+CGG | + | chr5_2:22080619-22080638 | Msa0763200:three_prime_UTR | 40.0% |
| TGGATTTGCAGTGGTGAAAG+TGG | + | chr5_2:22077999-22078018 | Msa0763200:CDS | 45.0% | |
| AGGGCTCTCAATTGAAATCG+GGG | + | chr5_2:22078214-22078233 | Msa0763200:intron | 45.0% | |
| ! | GACAGGCTGGATTCTTTTGA+AGG | + | chr5_2:22078237-22078256 | Msa0763200:CDS | 45.0% |
| GTGCATACTTCACAAAACGG+GGG | + | chr5_2:22078406-22078425 | Msa0763200:CDS | 45.0% | |
| GCTGGAATGTTGGATGAAGT+TGG | - | chr5_2:22078559-22078578 | None:intergenic | 45.0% | |
| TCAGTCACAACTTTGGCTAC+AGG | + | chr5_2:22078648-22078667 | Msa0763200:CDS | 45.0% | |
| !! | TGTTAAATGGTGTCGCACCA+TGG | - | chr5_2:22079068-22079087 | None:intergenic | 45.0% |
| GATTCATAACTCGATGCCCT+TGG | + | chr5_2:22079293-22079312 | Msa0763200:intron | 45.0% | |
| TAACTCGATGCCCTTGGAAT+AGG | + | chr5_2:22079299-22079318 | Msa0763200:intron | 45.0% | |
| TACCTTGAGAGCTGCATTCT+CGG | - | chr5_2:22079971-22079990 | None:intergenic | 45.0% | |
| AAGAAGGGAACCCATGAAAG+GGG | + | chr5_2:22080039-22080058 | Msa0763200:intron | 45.0% | |
| GGAAGTAACTCCCCTTTCAT+GGG | - | chr5_2:22080052-22080071 | None:intergenic | 45.0% | |
| ! | TACTTCCCCTGGTTTGAACT+CGG | + | chr5_2:22080065-22080084 | Msa0763200:intron | 45.0% |
| !! | TTGTCGATTCGGCAGACTAA+AGG | + | chr5_2:22080149-22080168 | Msa0763200:intron | 45.0% |
| !! | CGGCAGACTAAAGGTATTGT+TGG | + | chr5_2:22080158-22080177 | Msa0763200:intron | 45.0% |
| ! | AGAATGTAAGGGAGAGCGTA+TGG | + | chr5_2:22080222-22080241 | Msa0763200:intron | 45.0% |
| ! | CGATGGGCTTAGATGGAATT+TGG | + | chr5_2:22080376-22080395 | Msa0763200:intron | 45.0% |
| TCAACAAAGTGGACAGACAG+AGG | + | chr5_2:22080535-22080554 | Msa0763200:CDS | 45.0% | |
| !! | CACGCTCTTGCTATTGAGTT+AGG | - | chr5_2:22080609-22080628 | None:intergenic | 45.0% |
| !!! | TAAATTTTAAGATATATAAA+AGG | + | chr5_2:22078139-22078158 | Msa0763200:intron | 5.0% |
| GGGCTCTCAATTGAAATCGG+GGG | + | chr5_2:22078215-22078234 | Msa0763200:intron | 50.0% | |
| CTCAATTGAAATCGGGGGAC+AGG | + | chr5_2:22078220-22078239 | Msa0763200:CDS | 50.0% | |
| GTCATTCCTATCTCGGCAAG+TGG | + | chr5_2:22078469-22078488 | Msa0763200:CDS | 50.0% | |
| TTCATCGAGGTAGTCGAAGG+CGG | + | chr5_2:22078933-22078952 | Msa0763200:intron | 50.0% | |
| TGGCAGCGCCATAGACAAAA+TGG | - | chr5_2:22078987-22079006 | None:intergenic | 50.0% | |
| ! | TTTTGTCTATGGCGCTGCCA+TGG | + | chr5_2:22078987-22079006 | Msa0763200:intron | 50.0% |
| !! | TAAATGGTGTCGCACCATGG+CGG | - | chr5_2:22079065-22079084 | None:intergenic | 50.0% |
| TTCCGAGAATGCAGCTCTCA+AGG | + | chr5_2:22079966-22079985 | Msa0763200:CDS | 50.0% | |
| GGGAAGTAACTCCCCTTTCA+TGG | - | chr5_2:22080053-22080072 | None:intergenic | 50.0% | |
| ! | ACTTCCCCTGGTTTGAACTC+GGG | + | chr5_2:22080066-22080085 | Msa0763200:intron | 50.0% |
| AAGTCCCGAGTTCAAACCAG+GGG | - | chr5_2:22080073-22080092 | None:intergenic | 50.0% | |
| CAAGTCCCGAGTTCAAACCA+GGG | - | chr5_2:22080074-22080093 | None:intergenic | 50.0% | |
| ACAAGTCCCGAGTTCAAACC+AGG | - | chr5_2:22080075-22080094 | None:intergenic | 50.0% | |
| CTGGAGAGCTCGTGGAAATA+TGG | - | chr5_2:22080282-22080301 | None:intergenic | 50.0% | |
| CATATTTCCACGAGCTCTCC+AGG | + | chr5_2:22080280-22080299 | Msa0763200:intron | 50.0% | |
| ATTGAAATCGGGGGACAGGC+TGG | + | chr5_2:22078224-22078243 | Msa0763200:CDS | 55.0% | |
| TCCAACATTCCAGCTCTCCG+CGG | + | chr5_2:22078565-22078584 | Msa0763200:CDS | 55.0% | |
| ! | GGGTGGTTACTGGTGGATCA+CGG | + | chr5_2:22078617-22078636 | Msa0763200:CDS | 55.0% |
| ! | GGTGGTTACTGGTGGATCAC+GGG | + | chr5_2:22078618-22078637 | Msa0763200:CDS | 55.0% |
| AGGTGACGTCGAGTTTCACG+TGG | + | chr5_2:22079765-22079784 | Msa0763200:intron | 55.0% | |
| GAAAGGGGAGTTACTTCCCC+TGG | + | chr5_2:22080054-22080073 | Msa0763200:intron | 55.0% | |
| GATAGATCCTGGAGAGCTCG+TGG | - | chr5_2:22080290-22080309 | None:intergenic | 55.0% | |
| TGGACAGACAGAGGTTGTGC+AGG | + | chr5_2:22080544-22080563 | Msa0763200:CDS | 55.0% | |
| GGACAGACAGAGGTTGTGCA+GGG | + | chr5_2:22080545-22080564 | Msa0763200:CDS | 55.0% | |
| GGTTGTGCAGGGTGGTCATT+AGG | + | chr5_2:22080556-22080575 | Msa0763200:CDS | 55.0% | |
| ! | GGAGCACCACTTGCCGAGAT+AGG | - | chr5_2:22078478-22078497 | None:intergenic | 60.0% |
| ATCTCGGCAAGTGGTGCTCC+TGG | + | chr5_2:22078478-22078497 | Msa0763200:CDS | 60.0% | |
| ! | GGTGCTCCTGGAGCTGTTTC+TGG | + | chr5_2:22078490-22078509 | Msa0763200:CDS | 60.0% |
| TCCGCGGAGAGCTGGAATGT+TGG | - | chr5_2:22078569-22078588 | None:intergenic | 60.0% | |
| CATTCCAGCTCTCCGCGGAA+AGG | + | chr5_2:22078570-22078589 | Msa0763200:CDS | 60.0% | |
| TGGTAGGCGGAACCTTTCCG+CGG | - | chr5_2:22078585-22078604 | None:intergenic | 60.0% | |
| GGTTCCGCCTACCACAGTTG+CGG | + | chr5_2:22078591-22078610 | Msa0763200:CDS | 60.0% | |
| GTTCCGCCTACCACAGTTGC+GGG | + | chr5_2:22078592-22078611 | Msa0763200:CDS | 60.0% | |
| TCGAGGTAGTCGAAGGCGGA+AGG | + | chr5_2:22078937-22078956 | Msa0763200:intron | 60.0% | |
| GGGAATCTGCTCGGAGATCC+AGG | + | chr5_2:22079732-22079751 | Msa0763200:CDS | 60.0% | |
| GAGATCCAGGTTGCGCAAGC+AGG | + | chr5_2:22079745-22079764 | Msa0763200:CDS | 60.0% | |
| CAGACAGAGGTTGTGCAGGG+TGG | + | chr5_2:22080548-22080567 | Msa0763200:CDS | 60.0% | |
| GGAACCTTTCCGCGGAGAGC+TGG | - | chr5_2:22078577-22078596 | None:intergenic | 65.0% | |
| CCTCCCGCAACTGTGGTAGG+CGG | - | chr5_2:22078598-22078617 | None:intergenic | 65.0% | |
| CGCCTACCACAGTTGCGGGA+GGG | + | chr5_2:22078596-22078615 | Msa0763200:CDS | 65.0% | |
| GCCTACCACAGTTGCGGGAG+GGG | + | chr5_2:22078597-22078616 | Msa0763200:CDS | 65.0% | |
| ACCCCTCCCGCAACTGTGGT+AGG | - | chr5_2:22078601-22078620 | None:intergenic | 65.0% | |
| TACCACAGTTGCGGGAGGGG+TGG | + | chr5_2:22078600-22078619 | Msa0763200:CDS | 65.0% | |
| AACCACCCCTCCCGCAACTG+TGG | - | chr5_2:22078605-22078624 | None:intergenic | 65.0% | |
| GTTGCGGGAGGGGTGGTTAC+TGG | + | chr5_2:22078607-22078626 | Msa0763200:CDS | 65.0% | |
| TCCACCATGCCACTCCGCCA+TGG | + | chr5_2:22079048-22079067 | Msa0763200:intron | 65.0% | |
| ! | ACCATGGCGGAGTGGCATGG+TGG | - | chr5_2:22079052-22079071 | None:intergenic | 65.0% |
| CGTCACCTGCTTGCGCAACC+TGG | - | chr5_2:22079753-22079772 | None:intergenic | 65.0% | |
| GCGGGGCCAGAAACAGCTCC+AGG | - | chr5_2:22078499-22078518 | None:intergenic | 70.0% | |
| CCGCCTACCACAGTTGCGGG+AGG | + | chr5_2:22078595-22078614 | Msa0763200:CDS | 70.0% | |
| GCGGGAGGGGTGGTTACTGG+TGG | + | chr5_2:22078610-22078629 | Msa0763200:CDS | 70.0% | |
| ! | CGCACCATGGCGGAGTGGCA+TGG | - | chr5_2:22079055-22079074 | None:intergenic | 70.0% |
| ! | GGTGTCGCACCATGGCGGAG+TGG | - | chr5_2:22079060-22079079 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 22077939 | 22080940 | 22077939 | ID=Msa0763200;Name=Msa0763200 |
| chr5_2 | mRNA | 22077939 | 22080940 | 22077939 | ID=Msa0763200-mRNA-1;Parent=Msa0763200;Name=Msa0763200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.83|1|1|1|6|363|250 |
| chr5_2 | exon | 22077939 | 22078067 | 22077939 | ID=Msa0763200-mRNA-1:exon:9107;Parent=Msa0763200-mRNA-1 |
| chr5_2 | exon | 22078216 | 22078258 | 22078216 | ID=Msa0763200-mRNA-1:exon:9108;Parent=Msa0763200-mRNA-1 |
| chr5_2 | exon | 22078380 | 22078669 | 22078380 | ID=Msa0763200-mRNA-1:exon:9109;Parent=Msa0763200-mRNA-1 |
| chr5_2 | exon | 22079689 | 22079766 | 22079689 | ID=Msa0763200-mRNA-1:exon:9110;Parent=Msa0763200-mRNA-1 |
| chr5_2 | exon | 22079862 | 22079987 | 22079862 | ID=Msa0763200-mRNA-1:exon:9111;Parent=Msa0763200-mRNA-1 |
| chr5_2 | exon | 22080491 | 22080940 | 22080491 | ID=Msa0763200-mRNA-1:exon:9112;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22077939 | 22078067 | 22077939 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22078216 | 22078258 | 22078216 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22078380 | 22078669 | 22078380 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22079689 | 22079766 | 22079689 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22079862 | 22079987 | 22079862 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | CDS | 22080491 | 22080577 | 22080491 | ID=Msa0763200-mRNA-1:cds;Parent=Msa0763200-mRNA-1 |
| chr5_2 | three_prime_UTR | 22080578 | 22080940 | 22080578 | ID=Msa0763200-mRNA-1:three_prime_utr;Parent=Msa0763200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
