AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766980 MtrunA17_Chr5g0418431 95.014 1043 52 0 1 1043 1 1043 0.0 1996
Msa0766980 MtrunA17_Chr4g0042861 58.086 1076 379 29 1 1043 1 1037 0.0 1048
Msa0766980 MtrunA17_Chr4g0061211 33.861 316 165 13 731 1030 534 821 4.03e-30 128
Msa0766980 MtrunA17_Chr4g0061211 36.810 163 86 4 57 213 63 214 1.65e-19 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766980 AT1G13940.2 34.530 1086 555 45 1 1032 1 984 3.73e-134 431
Msa0766980 AT1G13940.1 34.530 1086 555 45 1 1032 1 984 3.73e-134 431
Msa0766980 AT1G69360.1 33.209 1075 488 44 11 1043 10 896 1.44e-118 386
Msa0766980 AT1G26620.1 32.522 1027 497 42 49 1043 5 867 1.86e-94 320

Find 296 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTGATTATATCTTTA+TGG 0.063471 5_2:+29468214 Msa0766980:three_prime_UTR
CAACAGCATCTTGTGGAATT+TGG 0.075026 5_2:-29467235 None:intergenic
TCTTATGATGATTATGTTAT+TGG 0.122351 5_2:-29467998 None:intergenic
GTCTCACTCTGCTGCTTCTT+GGG 0.166636 5_2:+29466179 Msa0766980:CDS
ACTTGATTGTTGTCAGTATT+TGG 0.171558 5_2:+29468150 Msa0766980:three_prime_UTR
GGAAGAAAATGGCATGTTTC+TGG 0.186876 5_2:+29465067 Msa0766980:CDS
TTCTGCCTCCCTCTCCTTGC+AGG 0.204753 5_2:-29467611 None:intergenic
GGTCTCACTCTGCTGCTTCT+TGG 0.207366 5_2:+29466178 Msa0766980:CDS
TATGCTAAGACAACTGTTTC+AGG 0.222114 5_2:+29465112 Msa0766980:CDS
ATTGAAGACAACTCCTTCTT+TGG 0.227315 5_2:-29466855 None:intergenic
GCGGGTGTTCATTCTCCTTT+AGG 0.227397 5_2:+29465139 Msa0766980:CDS
AACAGCATCTTGTGGAATTT+GGG 0.230872 5_2:-29467234 None:intergenic
CGGGAACTGCAGGGGCTTCC+AGG 0.245938 5_2:-29467154 None:intergenic
TTAAAGAGGATGTAGCTTTC+AGG 0.256090 5_2:+29463444 Msa0766980:five_prime_UTR
AATGGATATTTGGAGAATAA+TGG 0.265933 5_2:+29465664 Msa0766980:CDS
GTTACTTCATTCCTTGATAA+AGG 0.278750 5_2:-29467671 None:intergenic
TGAAGATTTCTTATCTATCT+TGG 0.280712 5_2:+29462995 Msa0766980:five_prime_UTR
GGCTAGAAACAATGGATATT+TGG 0.282163 5_2:+29465654 Msa0766980:CDS
AACGGTAGTGGGAGGGGAAG+GGG 0.283039 5_2:+29467779 Msa0766980:CDS
ACGGTAGTGGGAGGGGAAGG+GGG 0.294204 5_2:+29467780 Msa0766980:CDS
ATCATGTGCTCCATCAAATA+TGG 0.298740 5_2:-29468070 None:intergenic
TCCTTCTTTGGAGAGATATA+AGG 0.303399 5_2:-29466843 None:intergenic
CTTATGATGATTATGTTATT+GGG 0.309146 5_2:-29467997 None:intergenic
TCTAGTACTAAGAAAATTCT+TGG 0.318330 5_2:+29466801 Msa0766980:CDS
TTCCAGAGGGACATCCTTCC+GGG 0.318554 5_2:+29467641 Msa0766980:CDS
TCAAGTTTATACTGGAATAA+TGG 0.318618 5_2:-29468133 None:intergenic
ACAACAGAGTAATGGGAAAT+TGG 0.326471 5_2:+29466296 Msa0766980:CDS
TACTTACCTCAATCCTCCTT+TGG 0.326919 5_2:-29466773 None:intergenic
ATTTGTCCGGTTCAATCAAT+AGG 0.330385 5_2:+29466262 Msa0766980:CDS
ACAGAAGATATTCAGACATT+TGG 0.340151 5_2:+29467692 Msa0766980:CDS
CTTCCAGAGGGACATCCTTC+CGG 0.340526 5_2:+29467640 Msa0766980:CDS
GGCTTGGAATTGATATTTAG+AGG 0.344114 5_2:-29466330 None:intergenic
GTTTATTAACGGAGTATTCA+TGG 0.350086 5_2:-29466080 None:intergenic
TCCTCTGACTCGGGAACTGC+AGG 0.351164 5_2:-29467164 None:intergenic
CACAATAATGAAAAGAAATC+TGG 0.353326 5_2:+29466468 Msa0766980:CDS
CTCATCATTGAGTAATATCC+TGG 0.357926 5_2:-29464469 None:intergenic
TCTGAACTGACATCATCTTC+TGG 0.360584 5_2:-29466224 None:intergenic
ATGGATATTTGGAGAATAAT+GGG 0.363388 5_2:+29465665 Msa0766980:CDS
CCTATGATTTATCGAGGTCT+TGG 0.366500 5_2:+29466157 Msa0766980:CDS
TCCAGTCACAACAGAGTAAT+GGG 0.366995 5_2:+29466289 Msa0766980:CDS
GGATAGGAGCCTAACAGGTT+GGG 0.371749 5_2:+29467913 Msa0766980:CDS
TCATAATACTTCCCATTTGT+TGG 0.373137 5_2:-29464550 None:intergenic
TGAGGCTATATTTAAGAATC+AGG 0.377133 5_2:+29464651 Msa0766980:CDS
AAAGCAATTTCTCCTGTTTG+AGG 0.382024 5_2:-29465942 None:intergenic
TTGTCCATGAAAGGTGAAAC+TGG 0.383141 5_2:+29466687 Msa0766980:CDS
CATGCATCTGTGGTGGCATT+TGG 0.383862 5_2:-29464583 None:intergenic
GGCGATAAAACACCAACAAA+TGG 0.385092 5_2:+29464538 Msa0766980:CDS
CAACGGAGTGCTGCTTTCAT+TGG 0.386076 5_2:-29467855 None:intergenic
ATCTATCTTCTTCAATTCAA+TGG 0.388236 5_2:+29463386 Msa0766980:five_prime_UTR
CAACACCATGAGAAGCAAAA+AGG 0.391323 5_2:-29463352 None:intergenic
GACAACAATCAAGTTTATAC+TGG 0.391430 5_2:-29468141 None:intergenic
CCCTTTGTATTCTGTATAAA+CGG 0.391924 5_2:-29464940 None:intergenic
TGCTCCATCTGAAGCAGAAC+TGG 0.400956 5_2:+29466902 Msa0766980:CDS
CATGCCGAAGCCTCTTGTTC+CGG 0.402554 5_2:+29467532 Msa0766980:CDS
TGGCTTTCCTGCGGGAAATT+CGG 0.405268 5_2:+29465087 Msa0766980:CDS
TATGTTTCATCCACTTGAAC+AGG 0.407427 5_2:-29465487 None:intergenic
TTCATGTCACTGTTCTTAGA+AGG 0.407807 5_2:+29462953 Msa0766980:five_prime_UTR
TTGGAGGATAGGAGCCTAAC+AGG 0.412906 5_2:+29467908 Msa0766980:CDS
CATATTCATCGATGGTTCCT+TGG 0.418016 5_2:-29466418 None:intergenic
TCTCCTTTAGGTTCTGTTCA+AGG 0.418191 5_2:+29465151 Msa0766980:CDS
GAGAATAATGGGAATGGAAA+GGG 0.419683 5_2:+29465676 Msa0766980:CDS
CGGGTCTTGTACCTTTATCA+AGG 0.419803 5_2:+29467660 Msa0766980:CDS
TGAGTCAAGTGTTGGGATAA+TGG 0.424103 5_2:+29466551 Msa0766980:CDS
GAACAAAACGATGCCTCAAC+AGG 0.424563 5_2:-29465010 None:intergenic
CGAGTTTAGTAAATGTTCTC+TGG 0.426954 5_2:-29465611 None:intergenic
GGCGAGGAAGAAGGGGTAAC+CGG 0.427179 5_2:-29467821 None:intergenic
CATGTTTCTGGCTTTCCTGC+GGG 0.427605 5_2:+29465079 Msa0766980:CDS
CTCTGCTGCTTCTTGGGGAA+TGG 0.434703 5_2:+29466185 Msa0766980:CDS
CCTGCATCTGATTATGTAGA+TGG 0.435512 5_2:+29466009 Msa0766980:CDS
TTGGCAGTTTCCATATTTGA+TGG 0.437080 5_2:+29468060 Msa0766980:three_prime_UTR
CCAAGACCTCGATAAATCAT+AGG 0.440304 5_2:-29466157 None:intergenic
GAAATTCCTATTGATTGAAC+CGG 0.441056 5_2:-29466268 None:intergenic
TAGCGGCCAGCCACAACTGC+TGG 0.443752 5_2:-29464509 None:intergenic
ATTTGATGAATGATTTCAAA+AGG 0.444318 5_2:+29464963 Msa0766980:CDS
TCACACTGAATACCTGGATT+AGG 0.445530 5_2:-29466351 None:intergenic
ATGGGAAATTGGAGCATTGT+TGG 0.445746 5_2:+29466307 Msa0766980:CDS
TTACCTACTCGGACACGAAA+GGG 0.447426 5_2:+29467587 Msa0766980:CDS
TGAAAGCGACAGGTCATTCA+TGG 0.448461 5_2:+29467723 Msa0766980:CDS
AGAATAATGGGAATGGAAAG+GGG 0.449688 5_2:+29465677 Msa0766980:CDS
GGGAATTCCCTCGGTGGTCG+AGG 0.450143 5_2:+29465699 Msa0766980:CDS
TCCTGGGAGACTCTGAATCT+TGG 0.452621 5_2:-29464452 None:intergenic
GAATAATGGGAATGGAAAGG+GGG 0.452672 5_2:+29465678 Msa0766980:CDS
CCTTCATGTCTAAATTTGTC+CGG 0.456382 5_2:+29466249 Msa0766980:CDS
CGAAAGGGGCCTGCAAGGAG+AGG 0.458030 5_2:+29467602 Msa0766980:CDS
ACTAGGAACGGTAGTGGGAG+GGG 0.459357 5_2:+29467773 Msa0766980:CDS
ATTCCCTCGGTGGTCGAGGC+AGG 0.461175 5_2:+29465703 Msa0766980:CDS
TCCCATTACTCTGTTGTGAC+TGG 0.461464 5_2:-29466290 None:intergenic
CTAGAATCTGCTTCTGCTGT+AGG 0.461761 5_2:-29467038 None:intergenic
AATAACATAATCATCATAAG+AGG 0.462429 5_2:+29468000 Msa0766980:exon
GGTGGACCCCTTTGTCTTCG+AGG 0.462517 5_2:-29467953 None:intergenic
ATTTGGATAGTCAAAGCTAA+TGG 0.463450 5_2:-29466445 None:intergenic
GGAACGGTAGTGGGAGGGGA+AGG 0.464506 5_2:+29467777 Msa0766980:CDS
ACAGGTCATTCATGGCAATC+AGG 0.467277 5_2:+29467731 Msa0766980:CDS
CAACTGAAGATGGAAGAAAA+TGG 0.467359 5_2:+29465056 Msa0766980:CDS
TGTTTGAGGACTTGCGGCAC+AGG 0.467434 5_2:-29465928 None:intergenic
ACATTTACTAAACTCGCGTC+AGG 0.468423 5_2:+29465618 Msa0766980:CDS
TCACAGTGTGCACTTGATCA+TGG 0.470087 5_2:-29467322 None:intergenic
ACCACAGGTGGCGAGGAAGA+AGG 0.471913 5_2:-29467830 None:intergenic
AAATCATAGGAAGGAGCAGC+TGG 0.472071 5_2:-29466144 None:intergenic
ATATAAGGCATATCAAATAT+CGG 0.473433 5_2:-29466828 None:intergenic
ACGATGCCTCAACAGGCATC+TGG 0.473796 5_2:-29465003 None:intergenic
ACTTGTCTCTTCTGCAGTAA+TGG 0.474312 5_2:-29466646 None:intergenic
GTAACCGGTGTTGGCCGCCT+CGG 0.475335 5_2:-29467806 None:intergenic
AGGATAGGAGCCTAACAGGT+TGG 0.476364 5_2:+29467912 Msa0766980:CDS
CGCGTCAGGGAACTGACAGT+TGG 0.476905 5_2:+29465632 Msa0766980:CDS
TTGAAGTGGCGTTGGAGGAT+AGG 0.479810 5_2:+29467897 Msa0766980:CDS
AACGGAAAGGAGGATGATAG+AGG 0.480709 5_2:+29465391 Msa0766980:CDS
ATGAGATCCTCCTCTGACTC+GGG 0.480958 5_2:-29467173 None:intergenic
CACATGATGTTCTCGAGCAT+TGG 0.481317 5_2:+29468085 Msa0766980:three_prime_UTR
CGGCGAGGATGATGAAGGAT+TGG 0.483467 5_2:+29467457 Msa0766980:CDS
TAACATTGAAGTGGCGTTGG+AGG 0.483735 5_2:+29467892 Msa0766980:CDS
TCGAAGGCCTCGAAGACAAA+GGG 0.483916 5_2:+29467946 Msa0766980:CDS
AGGGGCCTGCAAGGAGAGGG+AGG 0.483999 5_2:+29467606 Msa0766980:CDS
ATGAAAGGTGAAACTGGAAA+AGG 0.484869 5_2:+29466693 Msa0766980:CDS
GAAGATATTCAGACATTTGG+AGG 0.486161 5_2:+29467695 Msa0766980:CDS
CCCTGCAGTTCCCGAGTCAG+AGG 0.489361 5_2:+29467163 Msa0766980:CDS
AAGCAAGTGCAATAATTTGA+AGG 0.494195 5_2:+29467427 Msa0766980:CDS
TTCTCCTGTTTGAGGACTTG+CGG 0.494455 5_2:-29465934 None:intergenic
GCAAGTTGATATCAAGCATC+CGG 0.494622 5_2:-29466944 None:intergenic
TTACTCGGAACATGAACAAA+AGG 0.501203 5_2:-29465517 None:intergenic
AAGAAGCTTAGATCGTCATC+AGG 0.503459 5_2:-29463189 None:intergenic
GCGATAAAACACCAACAAAT+GGG 0.504974 5_2:+29464539 Msa0766980:CDS
GAAAGGGGCCTGCAAGGAGA+GGG 0.506162 5_2:+29467603 Msa0766980:CDS
CTGAATACCTGGATTAGGCT+TGG 0.507127 5_2:-29466346 None:intergenic
TTCCAGTCACAACAGAGTAA+TGG 0.507446 5_2:+29466288 Msa0766980:CDS
ACATGAAATTTGTCAACATC+CGG 0.508831 5_2:-29462937 None:intergenic
ACCACCAGTTCTGCTTCAGA+TGG 0.508878 5_2:-29466906 None:intergenic
AATAATGGGAATGGAAAGGG+GGG 0.509000 5_2:+29465679 Msa0766980:CDS
GGATCCACTAGGTTGGTTTG+TGG 0.509267 5_2:+29467373 Msa0766980:CDS
TATTTAAGAATAATACAAGT+TGG 0.509272 5_2:-29468179 None:intergenic
AGACAAAGGGGTCCACCGGC+TGG 0.509388 5_2:+29467959 Msa0766980:CDS
GGACTCGGTATGTTTATTAA+CGG 0.510435 5_2:-29466091 None:intergenic
CCACAGGTGGCGAGGAAGAA+GGG 0.510500 5_2:-29467829 None:intergenic
GAGGCCGAGGCGGCCAACAC+CGG 0.511159 5_2:+29467802 Msa0766980:CDS
ATTCCTTGAACAGAACCTAA+AGG 0.512013 5_2:-29465154 None:intergenic
TCTCAAGTAACAACTGAAGA+TGG 0.512656 5_2:+29465046 Msa0766980:CDS
GATCTCGAGTTTGACAAAGA+AGG 0.512803 5_2:+29466981 Msa0766980:CDS
GCTCAGATCTTGAAGTGTCC+TGG 0.514028 5_2:-29465426 None:intergenic
TAGAGGGAAGACTTGTTGCC+AGG 0.515369 5_2:+29465408 Msa0766980:CDS
AGGAATCCAGCAGTTGTGGC+TGG 0.515962 5_2:+29464503 Msa0766980:CDS
ATCTGGCGATGGAAAGGGAC+CGG 0.516315 5_2:-29465188 None:intergenic
CATCCATCTGGCGATGGAAA+GGG 0.516458 5_2:-29465193 None:intergenic
TTAAGGTGGAACTGTTAAAG+AGG 0.516543 5_2:+29463430 Msa0766980:five_prime_UTR
GAACGGTAGTGGGAGGGGAA+GGG 0.518697 5_2:+29467778 Msa0766980:CDS
GGAGGGATTATGAAAGCGAC+AGG 0.518698 5_2:+29467713 Msa0766980:CDS
CAATAACATTGAAGTGGCGT+TGG 0.520359 5_2:+29467889 Msa0766980:CDS
TCGAAGACAAAGGGGTCCAC+CGG 0.520866 5_2:+29467955 Msa0766980:CDS
ATCAATTCCAAGCCTAATCC+AGG 0.521205 5_2:+29466339 Msa0766980:CDS
GCCTTATATCTCTCCAAAGA+AGG 0.521404 5_2:+29466842 Msa0766980:CDS
TCTCACTCTGCTGCTTCTTG+GGG 0.522186 5_2:+29466180 Msa0766980:CDS
AGCTCGACTAGGAACGGTAG+TGG 0.523282 5_2:+29467767 Msa0766980:CDS
CTTAAATGAACCTGTTCAAG+TGG 0.523894 5_2:+29465477 Msa0766980:CDS
TGAAAGGTGAAACTGGAAAA+GGG 0.524859 5_2:+29466694 Msa0766980:CDS
GACCCGGAAGGATGTCCCTC+TGG 0.525035 5_2:-29467643 None:intergenic
AGTTGTTACTTGAGATGTCA+AGG 0.525780 5_2:-29465038 None:intergenic
CAGCAAGTACTTTACCTACT+CGG 0.526491 5_2:+29467576 Msa0766980:CDS
CACAGTGTGCACTTGATCAT+GGG 0.526577 5_2:-29467321 None:intergenic
GAAGAAGGGGTAACCGGTGT+TGG 0.527152 5_2:-29467815 None:intergenic
TCCTCCATTGAACTTTCAGA+TGG 0.527649 5_2:-29467353 None:intergenic
TTAGTTCCTGAGTCAAGTGT+TGG 0.528100 5_2:+29466543 Msa0766980:CDS
GCATGTTTCTGGCTTTCCTG+CGG 0.528231 5_2:+29465078 Msa0766980:CDS
ACAACTGTTTCAGGTGCTGC+GGG 0.529852 5_2:+29465121 Msa0766980:CDS
ACATCCATCTGGCGATGGAA+AGG 0.530341 5_2:-29465194 None:intergenic
TAGTCCATCTGAAAGTTCAA+TGG 0.531763 5_2:+29467349 Msa0766980:CDS
CTGCTTTCATTGGTGACCAC+AGG 0.532851 5_2:-29467845 None:intergenic
GATAGGAGCCTAACAGGTTG+GGG 0.534435 5_2:+29467914 Msa0766980:CDS
TTCAGTGTGATCTACCGTTA+CGG 0.535326 5_2:+29466364 Msa0766980:CDS
CCTCTGACTCGGGAACTGCA+GGG 0.535532 5_2:-29467163 None:intergenic
TAGTTCCTGAGTCAAGTGTT+GGG 0.537334 5_2:+29466544 Msa0766980:CDS
TGCAGTAATGGAGCTTCTAT+CGG 0.540144 5_2:-29466634 None:intergenic
CCGTTTATACAGAATACAAA+GGG 0.540482 5_2:+29464940 Msa0766980:CDS
TGTGCCGCAAGTCCTCAAAC+AGG 0.541033 5_2:+29465930 Msa0766980:CDS
ACGGAAAGGAGGATGATAGA+GGG 0.542975 5_2:+29465392 Msa0766980:CDS
TTGAACAGGTTCATTTAAGT+CGG 0.543067 5_2:-29465473 None:intergenic
TTAAGCATGAGCGAGGATGA+AGG 0.544856 5_2:+29467080 Msa0766980:CDS
CTCTGACTCGGGAACTGCAG+GGG 0.545452 5_2:-29467162 None:intergenic
ACCAAGATTCAGAGTCTCCC+AGG 0.545801 5_2:+29464451 Msa0766980:CDS
GACTAGGAACGGTAGTGGGA+GGG 0.547099 5_2:+29467772 Msa0766980:CDS
ATCCATGTGAGAGATTCTTA+AGG 0.547792 5_2:+29463413 Msa0766980:five_prime_UTR
GCGTCAGGGAACTGACAGTT+GGG 0.549596 5_2:+29465633 Msa0766980:CDS
GACGATCTAAGCTTCTTCAA+TGG 0.550497 5_2:+29463195 Msa0766980:five_prime_UTR
AAAAGACCAGGTCTATGTAA+AGG 0.550711 5_2:-29466120 None:intergenic
CAATGGAGGATCCACTAGGT+TGG 0.550953 5_2:+29467366 Msa0766980:CDS
CTTGATAAAGGTACAAGACC+CGG 0.552697 5_2:-29467659 None:intergenic
CCCTTCTTCCTCGCCACCTG+TGG 0.553052 5_2:+29467829 Msa0766980:CDS
AATGAGATCCTCCTCTGACT+CGG 0.553438 5_2:-29467174 None:intergenic
CACCTTAAGAATCTCTCACA+TGG 0.554059 5_2:-29463415 None:intergenic
ACAGCATCTTGTGGAATTTG+GGG 0.554450 5_2:-29467233 None:intergenic
CCATCTACATAATCAGATGC+AGG 0.556653 5_2:-29466009 None:intergenic
CTTTCATTGGTGACCACAGG+TGG 0.556679 5_2:-29467842 None:intergenic
AATGAGGAATCCAGCAGTTG+TGG 0.556711 5_2:+29464499 Msa0766980:CDS
TTAAATGTGATTCTTACGAA+TGG 0.556712 5_2:+29466504 Msa0766980:CDS
CGACTAGGAACGGTAGTGGG+AGG 0.556953 5_2:+29467771 Msa0766980:CDS
GGTAGATCACACTGAATACC+TGG 0.557853 5_2:-29466357 None:intergenic
TGCATGTTCTGTGCATGATA+AGG 0.558180 5_2:+29464600 Msa0766980:CDS
TCTGGCACTAGCAGTGAGAT+CGG 0.559412 5_2:-29465563 None:intergenic
TATTTGGAGAATAATGGGAA+TGG 0.559485 5_2:+29465670 Msa0766980:CDS
TTCACGATTATCTTTACATG+AGG 0.560057 5_2:-29467405 None:intergenic
GACAACTGTTTCAGGTGCTG+CGG 0.560857 5_2:+29465120 Msa0766980:CDS
CTGACATCATCTTCTGGCTT+AGG 0.562322 5_2:-29466218 None:intergenic
TGGATGGAGACGCGTTGTCA+TGG 0.562377 5_2:+29466571 Msa0766980:CDS
TTTCATCAGCAGGGAGCGAA+AGG 0.564743 5_2:-29465282 None:intergenic
ACTGCTTCCTTGTCCATGAA+AGG 0.565775 5_2:+29466678 Msa0766980:CDS
CTCCTCGAGTGTCAATGTCA+TGG 0.566374 5_2:-29467492 None:intergenic
CTGCTATATAAATATATCAA+AGG 0.567672 5_2:-29468239 None:intergenic
GGCTGTTCAACAGCATCTTG+TGG 0.568116 5_2:-29467242 None:intergenic
GACAGTTGGGCTAGAAACAA+TGG 0.568403 5_2:+29465646 Msa0766980:CDS
GGACACGAAAGGGGCCTGCA+AGG 0.569513 5_2:+29467597 Msa0766980:CDS
AAACTACATCCATCTGGCGA+TGG 0.570506 5_2:-29465199 None:intergenic
GATTATGTTATTGGGATCAA+CGG 0.573963 5_2:-29467989 None:intergenic
AGCAAGTGCAATAATTTGAA+GGG 0.574214 5_2:+29467428 Msa0766980:CDS
CTAATAATATTGACCAAAGG+AGG 0.574992 5_2:+29466760 Msa0766980:CDS
CACAGGTGGCGAGGAAGAAG+GGG 0.576804 5_2:-29467828 None:intergenic
TTGGCGCCAGATGAAGACCC+TGG 0.579457 5_2:-29466399 None:intergenic
AAAGACGGCGAGGATGATGA+AGG 0.581023 5_2:+29467452 Msa0766980:CDS
GAATTTATAGAGGTAAGCAT+TGG 0.581372 5_2:+29468041 Msa0766980:three_prime_UTR
TGTGATCTACCGTTACGGAA+TGG 0.583674 5_2:+29466369 Msa0766980:CDS
TTATTGAGTTGCTGCATCAA+CGG 0.586308 5_2:-29467872 None:intergenic
AAACAAGGCTGATGCGTGGA+CGG 0.586453 5_2:+29466035 Msa0766980:CDS
AGATGCTGTTGAACAGCCAC+AGG 0.588008 5_2:+29467247 Msa0766980:CDS
GGTCCCTTTCCATCGCCAGA+TGG 0.589499 5_2:+29465190 Msa0766980:CDS
AAACTGGAAAAGGGCCTAGT+GGG 0.589973 5_2:+29466703 Msa0766980:CDS
CTCGAAGGCCTCGAAGACAA+AGG 0.593815 5_2:+29467945 Msa0766980:CDS
AGGGTCTTCATCTGGCGCCA+AGG 0.594329 5_2:+29466401 Msa0766980:CDS
GCAACTCAATAACATTGAAG+TGG 0.595523 5_2:+29467883 Msa0766980:CDS
ATTGGTGACCACAGGTGGCG+AGG 0.596266 5_2:-29467837 None:intergenic
AATGATGAGAGATCTTAATG+AGG 0.598461 5_2:+29464483 Msa0766980:CDS
GTTGCGGCAACTGAATTACT+CGG 0.599664 5_2:-29465532 None:intergenic
TTTACCTACTCGGACACGAA+AGG 0.601305 5_2:+29467586 Msa0766980:CDS
AGTTTCACCTTTCATGGACA+AGG 0.601579 5_2:-29466685 None:intergenic
AATAATTTGAAGGGAAAAGA+CGG 0.602054 5_2:+29467437 Msa0766980:CDS
CATGTGAGAGATTCTTAAGG+TGG 0.603990 5_2:+29463416 Msa0766980:five_prime_UTR
TATTGACCAAAGGAGGATTG+AGG 0.604222 5_2:+29466767 Msa0766980:CDS
AAGATATTCAGACATTTGGA+GGG 0.604422 5_2:+29467696 Msa0766980:CDS
TAACCTGCCTCGACCACCGA+GGG 0.604939 5_2:-29465706 None:intergenic
TTTGTATTCTGTATAAACGG+TGG 0.605146 5_2:-29464937 None:intergenic
TAACTAGAAGAAGCTCGACT+AGG 0.605657 5_2:+29467756 Msa0766980:CDS
GTTGTTACTTGAGATGTCAA+GGG 0.606534 5_2:-29465037 None:intergenic
ACCGTTTATACAGAATACAA+AGG 0.609083 5_2:+29464939 Msa0766980:CDS
TACCTACTCGGACACGAAAG+GGG 0.609413 5_2:+29467588 Msa0766980:CDS
TGTTCCGGAAAACTTCAAAG+TGG 0.610866 5_2:+29467547 Msa0766980:CDS
GCTCGACTAGGAACGGTAGT+GGG 0.611628 5_2:+29467768 Msa0766980:CDS
CCGGACAAATTTAGACATGA+AGG 0.611975 5_2:-29466249 None:intergenic
ATTATCCCAACACTTGACTC+AGG 0.612475 5_2:-29466549 None:intergenic
TCAAGTGTTGGGATAATGGA+TGG 0.612477 5_2:+29466555 Msa0766980:CDS
TCATCATTGAGTAATATCCT+GGG 0.614605 5_2:-29464468 None:intergenic
TTTCTCATAAGTTCATCCTG+TGG 0.615422 5_2:-29467263 None:intergenic
CAGAAACCAGATGCCTGTTG+AGG 0.617120 5_2:+29464997 Msa0766980:CDS
GGAGAATAATGGGAATGGAA+AGG 0.617660 5_2:+29465675 Msa0766980:CDS
GACCTCGATAAATCATAGGA+AGG 0.617924 5_2:-29466153 None:intergenic
TATGTTATTGGGATCAACGG+AGG 0.618317 5_2:-29467986 None:intergenic
AGATCTTGTCTTACTAACAA+CGG 0.619458 5_2:-29467015 None:intergenic
CTCCTTCCTATGATTTATCG+AGG 0.620372 5_2:+29466151 Msa0766980:CDS
ATGTAAAGGTAACACGGACT+CGG 0.621288 5_2:-29466106 None:intergenic
CCATGCATAAAATTCCCACT+AGG 0.622472 5_2:-29466717 None:intergenic
GTGTTACCTTTACATAGACC+TGG 0.622541 5_2:+29466114 Msa0766980:CDS
TGCAGTTCCCGAGTCAGAGG+AGG 0.623214 5_2:+29467166 Msa0766980:CDS
GTCGAAACAAGGCTGATGCG+TGG 0.623262 5_2:+29466031 Msa0766980:CDS
TTATGTAGATGGTCGAAACA+AGG 0.624614 5_2:+29466020 Msa0766980:CDS
GCGGATGATGCTTGAACATG+AGG 0.624665 5_2:+29464633 Msa0766980:CDS
CTCAGCGATGAAAAGACAAG+TGG 0.625717 5_2:+29465334 Msa0766980:CDS
AGAAGAAGCTCGACTAGGAA+CGG 0.628230 5_2:+29467761 Msa0766980:CDS
GCATAAGCCGAATTTCCCGC+AGG 0.628628 5_2:-29465094 None:intergenic
ATGGAAGACATATTCATCGA+TGG 0.628723 5_2:-29466426 None:intergenic
GAGATCGGAGCACTCAGTTG+CGG 0.629054 5_2:-29465548 None:intergenic
ATCAACGGAGGATTACCAGC+CGG 0.631780 5_2:-29467974 None:intergenic
AACGGAGGATTACCAGCCGG+TGG 0.633625 5_2:-29467971 None:intergenic
AATGAAGGATGAGATAGACC+TGG 0.633628 5_2:+29467136 Msa0766980:CDS
GCGATGGAAAGGGACCGGCT+TGG 0.634906 5_2:-29465183 None:intergenic
GGCCCCTTTCGTGTCCGAGT+AGG 0.639884 5_2:-29467590 None:intergenic
AGTTCAATGGAGGATCCACT+AGG 0.640502 5_2:+29467362 Msa0766980:CDS
TCCATCTGAAAGTTCAATGG+AGG 0.642120 5_2:+29467352 Msa0766980:CDS
GCTCTAATAATATTGACCAA+AGG 0.642289 5_2:+29466757 Msa0766980:CDS
ACATCCACAAACCAACCTAG+TGG 0.643680 5_2:-29467377 None:intergenic
GAAACTGGAAAAGGGCCTAG+TGG 0.644517 5_2:+29466702 Msa0766980:CDS
CAAGGAATAAGCAACCAAGC+CGG 0.644874 5_2:+29465169 Msa0766980:CDS
CATTTACTAAACTCGCGTCA+GGG 0.649785 5_2:+29465619 Msa0766980:CDS
GGATAAAATCCATTCCGTAA+CGG 0.649923 5_2:-29466378 None:intergenic
TCCATCTGAAGCAGAACTGG+TGG 0.650024 5_2:+29466905 Msa0766980:CDS
TTGTGCTTCATTCGTACGAG+CGG 0.655021 5_2:-29466607 None:intergenic
GGCAGAAGAGAGACTTCCAG+AGG 0.657130 5_2:+29467627 Msa0766980:CDS
ATGCACAGAACATGCATCTG+TGG 0.664776 5_2:-29464593 None:intergenic
GTCCATGACATTGACACTCG+AGG 0.666144 5_2:+29467490 Msa0766980:CDS
GGAGCACGAATCGACACAGA+GGG 0.666504 5_2:-29466885 None:intergenic
GCAGAAGAGAGACTTCCAGA+GGG 0.669655 5_2:+29467628 Msa0766980:CDS
TCGAGATCATTAGCATCACA+AGG 0.675027 5_2:-29466966 None:intergenic
CACAGAACATGCATCTGTGG+TGG 0.680865 5_2:-29464590 None:intergenic
ATAAAGGTACAAGACCCGGA+AGG 0.684683 5_2:-29467655 None:intergenic
CGAAGGCCTCGAAGACAAAG+GGG 0.685899 5_2:+29467947 Msa0766980:CDS
TCTGAACTTAAGCATGAGCG+AGG 0.694645 5_2:+29467073 Msa0766980:CDS
AGGTCTATGTAAAGGTAACA+CGG 0.696785 5_2:-29466112 None:intergenic
GTTGGGGTAAAACAACTCGA+AGG 0.705805 5_2:+29467930 Msa0766980:CDS
TGGAGCACGAATCGACACAG+AGG 0.712903 5_2:-29466886 None:intergenic
ATGATAAGGATGTTGTGAAG+CGG 0.726282 5_2:+29464614 Msa0766980:CDS
TTTGAAGGGAAAAGACGGCG+AGG 0.733004 5_2:+29467442 Msa0766980:CDS
CTAACCTGCCTCGACCACCG+AGG 0.740163 5_2:-29465707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTGTATTTTATATC+TGG + chr5_2:29463577-29463596 Msa0766980:intron 10.0%
!!! ATTTTAAAAAATCTTTTCAA+AGG - chr5_2:29464024-29464043 None:intergenic 10.0%
!!! CTATTTCTATAATAAAAAAA+GGG - chr5_2:29464766-29464785 None:intergenic 10.0%
!!! TTTTTTCTATAATTTCTTTT+AGG - chr5_2:29465827-29465846 None:intergenic 10.0%
!! AAGAAAAAAAATAACAAAGT+GGG - chr5_2:29463234-29463253 None:intergenic 15.0%
!!! ATTAAATTTTGTCTTATCAT+TGG + chr5_2:29463875-29463894 Msa0766980:intron 15.0%
!! TTTCTAACTTTCATTTAAAA+TGG + chr5_2:29464688-29464707 Msa0766980:intron 15.0%
!!! GCTATTTCTATAATAAAAAA+AGG - chr5_2:29464767-29464786 None:intergenic 15.0%
!!! GTTTTAAATACAGTTATAAT+TGG + chr5_2:29464868-29464887 Msa0766980:intron 15.0%
!!! ATATTTTTTTTTTGTCAAAC+AGG + chr5_2:29464904-29464923 Msa0766980:intron 15.0%
!! TATTTAAGAATAATACAAGT+TGG - chr5_2:29468182-29468201 None:intergenic 15.0%
!! GAAGAAAAAAAATAACAAAG+TGG - chr5_2:29463235-29463254 None:intergenic 20.0%
!!! CAACTATTTAAAGCTAAAAA+AGG - chr5_2:29463311-29463330 None:intergenic 20.0%
!!! CTTTTTTAGCTTTAAATAGT+TGG + chr5_2:29463309-29463328 Msa0766980:five_prime_UTR 20.0%
!!! TTGACTTTGAATTTTATTGA+TGG + chr5_2:29463744-29463763 Msa0766980:intron 20.0%
!!! AGTATTTGAAATGATTATTC+TGG + chr5_2:29463788-29463807 Msa0766980:intron 20.0%
!!! AAAAACATTTGTTTCTGTTT+TGG + chr5_2:29463814-29463833 Msa0766980:intron 20.0%
!!! TTAGATTGTTGTTGATTTTA+TGG + chr5_2:29463936-29463955 Msa0766980:intron 20.0%
!!! GAAAAATATCTTTTGAATAG+TGG - chr5_2:29463985-29464004 None:intergenic 20.0%
!!! TAACTTTCATTTAAAATGGT+AGG + chr5_2:29464692-29464711 Msa0766980:intron 20.0%
!! ATATGATAACACTTATGTAT+AGG + chr5_2:29464803-29464822 Msa0766980:intron 20.0%
!! ATTTGATGAATGATTTCAAA+AGG + chr5_2:29464963-29464982 Msa0766980:CDS 20.0%
!!! TTCTTTTCATTATTGTGATT+TGG - chr5_2:29466465-29466484 None:intergenic 20.0%
!! ATATAAGGCATATCAAATAT+CGG - chr5_2:29466831-29466850 None:intergenic 20.0%
!! CTTATGATGATTATGTTATT+GGG - chr5_2:29468000-29468019 None:intergenic 20.0%
!! TCTTATGATGATTATGTTAT+TGG - chr5_2:29468001-29468020 None:intergenic 20.0%
!! AATAACATAATCATCATAAG+AGG + chr5_2:29468000-29468019 Msa0766980:exon 20.0%
!!! TTTTAGATGAGAATTTATAG+AGG + chr5_2:29468031-29468050 Msa0766980:three_prime_UTR 20.0%
!! TTCTTCTGATTATATCTTTA+TGG + chr5_2:29468214-29468233 Msa0766980:three_prime_UTR 20.0%
!! CTGCTATATAAATATATCAA+AGG - chr5_2:29468242-29468261 None:intergenic 20.0%
! TGAAGATTTCTTATCTATCT+TGG + chr5_2:29462995-29463014 Msa0766980:five_prime_UTR 25.0%
! ATCTATCTTCTTCAATTCAA+TGG + chr5_2:29463386-29463405 Msa0766980:five_prime_UTR 25.0%
! AAACAAAAACAGTTAAGTCA+AGG - chr5_2:29463670-29463689 None:intergenic 25.0%
!!! ATTTGTTTCTGTTTTGGTTT+TGG + chr5_2:29463820-29463839 Msa0766980:intron 25.0%
!! TTTGAATATTTTGTCGTCAA+CGG - chr5_2:29464145-29464164 None:intergenic 25.0%
! TATCCTGTGTTATCAAATAA+CGG + chr5_2:29464180-29464199 Msa0766980:intron 25.0%
!! GCTTATTATAATTTGTGCTA+CGG + chr5_2:29464386-29464405 Msa0766980:intron 25.0%
!!! ATTTTTCTTCTCACTTTTGA+TGG - chr5_2:29465256-29465275 None:intergenic 25.0%
!! AAAAAACTGTAACTTTTGTC+TGG - chr5_2:29465584-29465603 None:intergenic 25.0%
!!! AGACAAAAGTTACAGTTTTT+TGG + chr5_2:29465583-29465602 Msa0766980:CDS 25.0%
! AATGGATATTTGGAGAATAA+TGG + chr5_2:29465664-29465683 Msa0766980:CDS 25.0%
! ATGGATATTTGGAGAATAAT+GGG + chr5_2:29465665-29465684 Msa0766980:CDS 25.0%
! CACAATAATGAAAAGAAATC+TGG + chr5_2:29466468-29466487 Msa0766980:CDS 25.0%
! TTAAATGTGATTCTTACGAA+TGG + chr5_2:29466504-29466523 Msa0766980:CDS 25.0%
! TCTAGTACTAAGAAAATTCT+TGG + chr5_2:29466801-29466820 Msa0766980:CDS 25.0%
! AATAATTTGAAGGGAAAAGA+CGG + chr5_2:29467437-29467456 Msa0766980:CDS 25.0%
! TCAAGTTTATACTGGAATAA+TGG - chr5_2:29468136-29468155 None:intergenic 25.0%
ACATGAAATTTGTCAACATC+CGG - chr5_2:29462940-29462959 None:intergenic 30.0%
!! AGAAGATTTTTCGATCTACT+GGG - chr5_2:29463154-29463173 None:intergenic 30.0%
!! AAGAAGATTTTTCGATCTAC+TGG - chr5_2:29463155-29463174 None:intergenic 30.0%
!! ATTTTATTGATGGAGTGTTC+TGG + chr5_2:29463754-29463773 Msa0766980:intron 30.0%
! TTGATTTTATGGTGTGTGTT+TGG + chr5_2:29463947-29463966 Msa0766980:intron 30.0%
TTTAACAGATGTGCTTCTAA+CGG + chr5_2:29464071-29464090 Msa0766980:intron 30.0%
! TTGAATATTTTGTCGTCAAC+GGG - chr5_2:29464144-29464163 None:intergenic 30.0%
GAACAAACTGTTATTATCTG+CGG + chr5_2:29464281-29464300 Msa0766980:intron 30.0%
TGTGATCAATTATCAGGAAT+GGG + chr5_2:29464427-29464446 Msa0766980:intron 30.0%
TCATCATTGAGTAATATCCT+GGG - chr5_2:29464471-29464490 None:intergenic 30.0%
AATGATGAGAGATCTTAATG+AGG + chr5_2:29464483-29464502 Msa0766980:CDS 30.0%
! GTTTTATCGCCATAAAATAG+CGG - chr5_2:29464529-29464548 None:intergenic 30.0%
TCATAATACTTCCCATTTGT+TGG - chr5_2:29464553-29464572 None:intergenic 30.0%
TGAGGCTATATTTAAGAATC+AGG + chr5_2:29464651-29464670 Msa0766980:CDS 30.0%
GTTTGAATAAACAGCTACAT+AGG - chr5_2:29464831-29464850 None:intergenic 30.0%
ATGTAGCTGTTTATTCAAAC+CGG + chr5_2:29464831-29464850 Msa0766980:intron 30.0%
AAAACTAAGTAAACTTTGCC+CGG - chr5_2:29464853-29464872 None:intergenic 30.0%
TTTGTATTCTGTATAAACGG+TGG - chr5_2:29464940-29464959 None:intergenic 30.0%
ACCGTTTATACAGAATACAA+AGG + chr5_2:29464939-29464958 Msa0766980:CDS 30.0%
CCCTTTGTATTCTGTATAAA+CGG - chr5_2:29464943-29464962 None:intergenic 30.0%
CCGTTTATACAGAATACAAA+GGG + chr5_2:29464940-29464959 Msa0766980:CDS 30.0%
! TCTTTTAAACTACATCCATC+TGG - chr5_2:29465208-29465227 None:intergenic 30.0%
CCTGATAGAAGTTGTAAAAA+CGG + chr5_2:29465373-29465392 Msa0766980:CDS 30.0%
TAGAAGTTGTAAAAACGGAA+AGG + chr5_2:29465378-29465397 Msa0766980:CDS 30.0%
!! GAGCAGTTTTTAAGAAGAAA+CGG + chr5_2:29465445-29465464 Msa0766980:CDS 30.0%
TTGAACAGGTTCATTTAAGT+CGG - chr5_2:29465476-29465495 None:intergenic 30.0%
! TATTTGGAGAATAATGGGAA+TGG + chr5_2:29465670-29465689 Msa0766980:CDS 30.0%
! AAGTCTAAAACAGCTTATGA+AGG - chr5_2:29465766-29465785 None:intergenic 30.0%
!! TTCATAAGCTGTTTTAGACT+TGG + chr5_2:29465765-29465784 Msa0766980:intron 30.0%
!! TCATAAGCTGTTTTAGACTT+GGG + chr5_2:29465766-29465785 Msa0766980:intron 30.0%
! TAACTTTCCATTTGTTGACA+GGG + chr5_2:29465884-29465903 Msa0766980:intron 30.0%
! GTTTATTAACGGAGTATTCA+TGG - chr5_2:29466083-29466102 None:intergenic 30.0%
! GAAATTCCTATTGATTGAAC+CGG - chr5_2:29466271-29466290 None:intergenic 30.0%
ATTTGGATAGTCAAAGCTAA+TGG - chr5_2:29466448-29466467 None:intergenic 30.0%
GCTCTAATAATATTGACCAA+AGG + chr5_2:29466757-29466776 Msa0766980:CDS 30.0%
CTAATAATATTGACCAAAGG+AGG + chr5_2:29466760-29466779 Msa0766980:CDS 30.0%
TGGTAAATAAGCACAAAAAC+CGG + chr5_2:29466925-29466944 Msa0766980:CDS 30.0%
AGATCTTGTCTTACTAACAA+CGG - chr5_2:29467018-29467037 None:intergenic 30.0%
!! CTCATCCTTCATTTTTGTAT+CGG - chr5_2:29467129-29467148 None:intergenic 30.0%
TTCACGATTATCTTTACATG+AGG - chr5_2:29467408-29467427 None:intergenic 30.0%
AAGCAAGTGCAATAATTTGA+AGG + chr5_2:29467427-29467446 Msa0766980:CDS 30.0%
AGCAAGTGCAATAATTTGAA+GGG + chr5_2:29467428-29467447 Msa0766980:CDS 30.0%
GTTACTTCATTCCTTGATAA+AGG - chr5_2:29467674-29467693 None:intergenic 30.0%
ACAGAAGATATTCAGACATT+TGG + chr5_2:29467692-29467711 Msa0766980:CDS 30.0%
AAGATATTCAGACATTTGGA+GGG + chr5_2:29467696-29467715 Msa0766980:CDS 30.0%
GATTATGTTATTGGGATCAA+CGG - chr5_2:29467992-29468011 None:intergenic 30.0%
GAATTTATAGAGGTAAGCAT+TGG + chr5_2:29468041-29468060 Msa0766980:three_prime_UTR 30.0%
GACAACAATCAAGTTTATAC+TGG - chr5_2:29468144-29468163 None:intergenic 30.0%
ACTTGATTGTTGTCAGTATT+TGG + chr5_2:29468150-29468169 Msa0766980:three_prime_UTR 30.0%
AGCAGAGAATAAAAAGAGAC+CGG + chr5_2:29462918-29462937 Msa0766980:five_prime_UTR 35.0%
TTCATGTCACTGTTCTTAGA+AGG + chr5_2:29462953-29462972 Msa0766980:five_prime_UTR 35.0%
GAGAAGCAAAAAGGAATTCA+GGG - chr5_2:29463346-29463365 None:intergenic 35.0%
TGAGAAGCAAAAAGGAATTC+AGG - chr5_2:29463347-29463366 None:intergenic 35.0%
! GAATTCCTTTTTGCTTCTCA+TGG + chr5_2:29463347-29463366 Msa0766980:five_prime_UTR 35.0%
ATCCATGTGAGAGATTCTTA+AGG + chr5_2:29463413-29463432 Msa0766980:five_prime_UTR 35.0%
TTAAGGTGGAACTGTTAAAG+AGG + chr5_2:29463430-29463449 Msa0766980:five_prime_UTR 35.0%
TTAAAGAGGATGTAGCTTTC+AGG + chr5_2:29463444-29463463 Msa0766980:five_prime_UTR 35.0%
TGAGTACGAGGTTAATTCTT+TGG + chr5_2:29463608-29463627 Msa0766980:intron 35.0%
!!! CTTTGGTTCATGTTGTTTTG+AGG + chr5_2:29463625-29463644 Msa0766980:intron 35.0%
GTTAAGTCAAGGAGTTCATT+TGG - chr5_2:29463659-29463678 None:intergenic 35.0%
ATCTGTTAAATCACATCCGA+AGG - chr5_2:29464061-29464080 None:intergenic 35.0%
AGTTGTGACGCACATTTATA+TGG - chr5_2:29464118-29464137 None:intergenic 35.0%
! TAGCCGTTATTTGATAACAC+AGG - chr5_2:29464186-29464205 None:intergenic 35.0%
!! TCTATACCGTTTTTCAACGT+TGG + chr5_2:29464361-29464380 Msa0766980:intron 35.0%
GATCACAGTTAGCACAAATT+AGG - chr5_2:29464414-29464433 None:intergenic 35.0%
GCTAACTGTGATCAATTATC+AGG + chr5_2:29464421-29464440 Msa0766980:intron 35.0%
CTGTGATCAATTATCAGGAA+TGG + chr5_2:29464426-29464445 Msa0766980:intron 35.0%
CTCATCATTGAGTAATATCC+TGG - chr5_2:29464472-29464491 None:intergenic 35.0%
GCGATAAAACACCAACAAAT+GGG + chr5_2:29464539-29464558 Msa0766980:CDS 35.0%
ATGATAAGGATGTTGTGAAG+CGG + chr5_2:29464614-29464633 Msa0766980:CDS 35.0%
ATAATAAAAAAAGGGCAGCC+CGG - chr5_2:29464758-29464777 None:intergenic 35.0%
TGTAGCTGTTTATTCAAACC+GGG + chr5_2:29464832-29464851 Msa0766980:intron 35.0%
! GTTGTTACTTGAGATGTCAA+GGG - chr5_2:29465040-29465059 None:intergenic 35.0%
! AGTTGTTACTTGAGATGTCA+AGG - chr5_2:29465041-29465060 None:intergenic 35.0%
TCTCAAGTAACAACTGAAGA+TGG + chr5_2:29465046-29465065 Msa0766980:CDS 35.0%
CAACTGAAGATGGAAGAAAA+TGG + chr5_2:29465056-29465075 Msa0766980:CDS 35.0%
TATGCTAAGACAACTGTTTC+AGG + chr5_2:29465112-29465131 Msa0766980:CDS 35.0%
ATTCCTTGAACAGAACCTAA+AGG - chr5_2:29465157-29465176 None:intergenic 35.0%
! AATCAACGTTTTCATCAGCA+GGG - chr5_2:29465294-29465313 None:intergenic 35.0%
!! CCGTTTTTACAACTTCTATC+AGG - chr5_2:29465376-29465395 None:intergenic 35.0%
AAGTTGTAAAAACGGAAAGG+AGG + chr5_2:29465381-29465400 Msa0766980:CDS 35.0%
CTTAAATGAACCTGTTCAAG+TGG + chr5_2:29465477-29465496 Msa0766980:CDS 35.0%
TATGTTTCATCCACTTGAAC+AGG - chr5_2:29465490-29465509 None:intergenic 35.0%
TTACTCGGAACATGAACAAA+AGG - chr5_2:29465520-29465539 None:intergenic 35.0%
CGAGTTTAGTAAATGTTCTC+TGG - chr5_2:29465614-29465633 None:intergenic 35.0%
GGCTAGAAACAATGGATATT+TGG + chr5_2:29465654-29465673 Msa0766980:CDS 35.0%
! GAGAATAATGGGAATGGAAA+GGG + chr5_2:29465676-29465695 Msa0766980:CDS 35.0%
! AGAATAATGGGAATGGAAAG+GGG + chr5_2:29465677-29465696 Msa0766980:CDS 35.0%
! CAAATGGAAAGTTAGTTTCG+TGG - chr5_2:29465878-29465897 None:intergenic 35.0%
! CTAACTTTCCATTTGTTGAC+AGG + chr5_2:29465883-29465902 Msa0766980:intron 35.0%
AAAGCAATTTCTCCTGTTTG+AGG - chr5_2:29465945-29465964 None:intergenic 35.0%
TTATGTAGATGGTCGAAACA+AGG + chr5_2:29466020-29466039 Msa0766980:CDS 35.0%
! GGACTCGGTATGTTTATTAA+CGG - chr5_2:29466094-29466113 None:intergenic 35.0%
AGGTCTATGTAAAGGTAACA+CGG - chr5_2:29466115-29466134 None:intergenic 35.0%
AAAAGACCAGGTCTATGTAA+AGG - chr5_2:29466123-29466142 None:intergenic 35.0%
CCTTCATGTCTAAATTTGTC+CGG + chr5_2:29466249-29466268 Msa0766980:CDS 35.0%
ATTTGTCCGGTTCAATCAAT+AGG + chr5_2:29466262-29466281 Msa0766980:CDS 35.0%
! ACAACAGAGTAATGGGAAAT+TGG + chr5_2:29466296-29466315 Msa0766980:CDS 35.0%
GGCTTGGAATTGATATTTAG+AGG - chr5_2:29466333-29466352 None:intergenic 35.0%
GGATAAAATCCATTCCGTAA+CGG - chr5_2:29466381-29466400 None:intergenic 35.0%
!! TTACGGAATGGATTTTATCC+AGG + chr5_2:29466381-29466400 Msa0766980:CDS 35.0%
!! TACGGAATGGATTTTATCCA+GGG + chr5_2:29466382-29466401 Msa0766980:CDS 35.0%
ATGGAAGACATATTCATCGA+TGG - chr5_2:29466429-29466448 None:intergenic 35.0%
! TTTTCCAGTTTCACCTTTCA+TGG - chr5_2:29466694-29466713 None:intergenic 35.0%
ATGAAAGGTGAAACTGGAAA+AGG + chr5_2:29466693-29466712 Msa0766980:CDS 35.0%
TGAAAGGTGAAACTGGAAAA+GGG + chr5_2:29466694-29466713 Msa0766980:CDS 35.0%
! TCCTTCTTTGGAGAGATATA+AGG - chr5_2:29466846-29466865 None:intergenic 35.0%
ATTGAAGACAACTCCTTCTT+TGG - chr5_2:29466858-29466877 None:intergenic 35.0%
!! TTCATTTTTGTATCGGCACT+TGG - chr5_2:29467122-29467141 None:intergenic 35.0%
!! AAGTGCCGATACAAAAATGA+AGG + chr5_2:29467121-29467140 Msa0766980:CDS 35.0%
!! GTATCAAGCTTGTTTTCTTC+TGG - chr5_2:29467200-29467219 None:intergenic 35.0%
AACAGCATCTTGTGGAATTT+GGG - chr5_2:29467237-29467256 None:intergenic 35.0%
TTTCTCATAAGTTCATCCTG+TGG - chr5_2:29467266-29467285 None:intergenic 35.0%
GATCATGGGAAAAAGATGAA+AGG - chr5_2:29467310-29467329 None:intergenic 35.0%
TAGTCCATCTGAAAGTTCAA+TGG + chr5_2:29467349-29467368 Msa0766980:CDS 35.0%
!!! TCTTCCACTTTGAAGTTTTC+CGG - chr5_2:29467554-29467573 None:intergenic 35.0%
GAAGATATTCAGACATTTGG+AGG + chr5_2:29467695-29467714 Msa0766980:CDS 35.0%
! TTATTGAGTTGCTGCATCAA+CGG - chr5_2:29467875-29467894 None:intergenic 35.0%
GCAACTCAATAACATTGAAG+TGG + chr5_2:29467883-29467902 Msa0766980:CDS 35.0%
TTGGCAGTTTCCATATTTGA+TGG + chr5_2:29468060-29468079 Msa0766980:three_prime_UTR 35.0%
ATCATGTGCTCCATCAAATA+TGG - chr5_2:29468073-29468092 None:intergenic 35.0%
AAGAAGCTTAGATCGTCATC+AGG - chr5_2:29463192-29463211 None:intergenic 40.0%
GACGATCTAAGCTTCTTCAA+TGG + chr5_2:29463195-29463214 Msa0766980:five_prime_UTR 40.0%
CAACACCATGAGAAGCAAAA+AGG - chr5_2:29463355-29463374 None:intergenic 40.0%
CACCTTAAGAATCTCTCACA+TGG - chr5_2:29463418-29463437 None:intergenic 40.0%
CATGTGAGAGATTCTTAAGG+TGG + chr5_2:29463416-29463435 Msa0766980:five_prime_UTR 40.0%
!!! CTGGTTTTGTTTTGAGTACG+AGG + chr5_2:29463596-29463615 Msa0766980:intron 40.0%
ATTGCAAAGTTTGTCGCCTT+CGG + chr5_2:29464042-29464061 Msa0766980:intron 40.0%
GGACCAAACTTATCAATCCA+TGG - chr5_2:29464097-29464116 None:intergenic 40.0%
! ATGTTTGCTAAAATCGCGCT+AGG - chr5_2:29464223-29464242 None:intergenic 40.0%
AAGCAGCCAACGTTGAAAAA+CGG - chr5_2:29464370-29464389 None:intergenic 40.0%
GGCGATAAAACACCAACAAA+TGG + chr5_2:29464538-29464557 Msa0766980:CDS 40.0%
TGCATGTTCTGTGCATGATA+AGG + chr5_2:29464600-29464619 Msa0766980:CDS 40.0%
GGAAGAAAATGGCATGTTTC+TGG + chr5_2:29465067-29465086 Msa0766980:CDS 40.0%
! TCTCCTTTAGGTTCTGTTCA+AGG + chr5_2:29465151-29465170 Msa0766980:CDS 40.0%
!! TCTTCTCACTTTTGATGGTC+TGG - chr5_2:29465251-29465270 None:intergenic 40.0%
! GAATCAACGTTTTCATCAGC+AGG - chr5_2:29465295-29465314 None:intergenic 40.0%
ACATTTACTAAACTCGCGTC+AGG + chr5_2:29465618-29465637 Msa0766980:CDS 40.0%
CATTTACTAAACTCGCGTCA+GGG + chr5_2:29465619-29465638 Msa0766980:CDS 40.0%
! GGAGAATAATGGGAATGGAA+AGG + chr5_2:29465675-29465694 Msa0766980:CDS 40.0%
! GAATAATGGGAATGGAAAGG+GGG + chr5_2:29465678-29465697 Msa0766980:CDS 40.0%
! AATAATGGGAATGGAAAGGG+GGG + chr5_2:29465679-29465698 Msa0766980:CDS 40.0%
CCATCTACATAATCAGATGC+AGG - chr5_2:29466012-29466031 None:intergenic 40.0%
CCTGCATCTGATTATGTAGA+TGG + chr5_2:29466009-29466028 Msa0766980:CDS 40.0%
ATGTAAAGGTAACACGGACT+CGG - chr5_2:29466109-29466128 None:intergenic 40.0%
GTGTTACCTTTACATAGACC+TGG + chr5_2:29466114-29466133 Msa0766980:CDS 40.0%
CTCCTTCCTATGATTTATCG+AGG + chr5_2:29466151-29466170 Msa0766980:CDS 40.0%
GACCTCGATAAATCATAGGA+AGG - chr5_2:29466156-29466175 None:intergenic 40.0%
CCAAGACCTCGATAAATCAT+AGG - chr5_2:29466160-29466179 None:intergenic 40.0%
CCTATGATTTATCGAGGTCT+TGG + chr5_2:29466157-29466176 Msa0766980:CDS 40.0%
TCTGAACTGACATCATCTTC+TGG - chr5_2:29466227-29466246 None:intergenic 40.0%
CCGGACAAATTTAGACATGA+AGG - chr5_2:29466252-29466271 None:intergenic 40.0%
TTCCAGTCACAACAGAGTAA+TGG + chr5_2:29466288-29466307 Msa0766980:CDS 40.0%
TCCAGTCACAACAGAGTAAT+GGG + chr5_2:29466289-29466308 Msa0766980:CDS 40.0%
!! ATGGGAAATTGGAGCATTGT+TGG + chr5_2:29466307-29466326 Msa0766980:CDS 40.0%
ATCAATTCCAAGCCTAATCC+AGG + chr5_2:29466339-29466358 Msa0766980:CDS 40.0%
TCACACTGAATACCTGGATT+AGG - chr5_2:29466354-29466373 None:intergenic 40.0%
TTCAGTGTGATCTACCGTTA+CGG + chr5_2:29466364-29466383 Msa0766980:CDS 40.0%
! TTTTATCCAGGGTCTTCATC+TGG + chr5_2:29466393-29466412 Msa0766980:CDS 40.0%
CATATTCATCGATGGTTCCT+TGG - chr5_2:29466421-29466440 None:intergenic 40.0%
TTAGTTCCTGAGTCAAGTGT+TGG + chr5_2:29466543-29466562 Msa0766980:CDS 40.0%
TAGTTCCTGAGTCAAGTGTT+GGG + chr5_2:29466544-29466563 Msa0766980:CDS 40.0%
ATTATCCCAACACTTGACTC+AGG - chr5_2:29466552-29466571 None:intergenic 40.0%
!! TGAGTCAAGTGTTGGGATAA+TGG + chr5_2:29466551-29466570 Msa0766980:CDS 40.0%
!! TCAAGTGTTGGGATAATGGA+TGG + chr5_2:29466555-29466574 Msa0766980:CDS 40.0%
! TGCAGTAATGGAGCTTCTAT+CGG - chr5_2:29466637-29466656 None:intergenic 40.0%
ACTTGTCTCTTCTGCAGTAA+TGG - chr5_2:29466649-29466668 None:intergenic 40.0%
AGTTTCACCTTTCATGGACA+AGG - chr5_2:29466688-29466707 None:intergenic 40.0%
TTGTCCATGAAAGGTGAAAC+TGG + chr5_2:29466687-29466706 Msa0766980:CDS 40.0%
CCATGCATAAAATTCCCACT+AGG - chr5_2:29466720-29466739 None:intergenic 40.0%
! CCTAGTGGGAATTTTATGCA+TGG + chr5_2:29466717-29466736 Msa0766980:CDS 40.0%
TATTGACCAAAGGAGGATTG+AGG + chr5_2:29466767-29466786 Msa0766980:CDS 40.0%
TACTTACCTCAATCCTCCTT+TGG - chr5_2:29466776-29466795 None:intergenic 40.0%
GCCTTATATCTCTCCAAAGA+AGG + chr5_2:29466842-29466861 Msa0766980:CDS 40.0%
!! GCAAGTTGATATCAAGCATC+CGG - chr5_2:29466947-29466966 None:intergenic 40.0%
TCGAGATCATTAGCATCACA+AGG - chr5_2:29466969-29466988 None:intergenic 40.0%
GATCTCGAGTTTGACAAAGA+AGG + chr5_2:29466981-29467000 Msa0766980:CDS 40.0%
AATGAAGGATGAGATAGACC+TGG + chr5_2:29467136-29467155 Msa0766980:CDS 40.0%
ACAGCATCTTGTGGAATTTG+GGG - chr5_2:29467236-29467255 None:intergenic 40.0%
CAACAGCATCTTGTGGAATT+TGG - chr5_2:29467238-29467257 None:intergenic 40.0%
TCCATCTGAAAGTTCAATGG+AGG + chr5_2:29467352-29467371 Msa0766980:CDS 40.0%
TCCTCCATTGAACTTTCAGA+TGG - chr5_2:29467356-29467375 None:intergenic 40.0%
! TTGAAGTTTTCCGGAACAAG+AGG - chr5_2:29467545-29467564 None:intergenic 40.0%
TGTTCCGGAAAACTTCAAAG+TGG + chr5_2:29467547-29467566 Msa0766980:CDS 40.0%
CAGCAAGTACTTTACCTACT+CGG + chr5_2:29467576-29467595 Msa0766980:CDS 40.0%
! CTTGATAAAGGTACAAGACC+CGG - chr5_2:29467662-29467681 None:intergenic 40.0%
TAACTAGAAGAAGCTCGACT+AGG + chr5_2:29467756-29467775 Msa0766980:CDS 40.0%
CAATAACATTGAAGTGGCGT+TGG + chr5_2:29467889-29467908 Msa0766980:CDS 40.0%
!! TTGTTTTACCCCAACCTGTT+AGG - chr5_2:29467925-29467944 None:intergenic 40.0%
TATGTTATTGGGATCAACGG+AGG - chr5_2:29467989-29468008 None:intergenic 40.0%
! CGGCCATGGATTGATAAGTT+TGG + chr5_2:29464091-29464110 Msa0766980:intron 45.0%
AATGAGGAATCCAGCAGTTG+TGG + chr5_2:29464499-29464518 Msa0766980:CDS 45.0%
ATGCACAGAACATGCATCTG+TGG - chr5_2:29464596-29464615 None:intergenic 45.0%
GAACAAAACGATGCCTCAAC+AGG - chr5_2:29465013-29465032 None:intergenic 45.0%
!!! GTTGAGGCATCGTTTTGTTC+AGG + chr5_2:29465013-29465032 Msa0766980:CDS 45.0%
CAAGGAATAAGCAACCAAGC+CGG + chr5_2:29465169-29465188 Msa0766980:CDS 45.0%
AAACTACATCCATCTGGCGA+TGG - chr5_2:29465202-29465221 None:intergenic 45.0%
!! TCTCACTTTTGATGGTCTGG+TGG - chr5_2:29465248-29465267 None:intergenic 45.0%
CTCAGCGATGAAAAGACAAG+TGG + chr5_2:29465334-29465353 Msa0766980:CDS 45.0%
AACGGAAAGGAGGATGATAG+AGG + chr5_2:29465391-29465410 Msa0766980:CDS 45.0%
ACGGAAAGGAGGATGATAGA+GGG + chr5_2:29465392-29465411 Msa0766980:CDS 45.0%
GTTGCGGCAACTGAATTACT+CGG - chr5_2:29465535-29465554 None:intergenic 45.0%
! GACAGTTGGGCTAGAAACAA+TGG + chr5_2:29465646-29465665 Msa0766980:CDS 45.0%
GGAACATATTCAGCAGTGAG+TGG - chr5_2:29465806-29465825 None:intergenic 45.0%
TAGCATGCCCTGTCAACAAA+TGG - chr5_2:29465894-29465913 None:intergenic 45.0%
TTCTCCTGTTTGAGGACTTG+CGG - chr5_2:29465937-29465956 None:intergenic 45.0%
AAATCATAGGAAGGAGCAGC+TGG - chr5_2:29466147-29466166 None:intergenic 45.0%
!! CTGACATCATCTTCTGGCTT+AGG - chr5_2:29466221-29466240 None:intergenic 45.0%
TCCCATTACTCTGTTGTGAC+TGG - chr5_2:29466293-29466312 None:intergenic 45.0%
! CTGAATACCTGGATTAGGCT+TGG - chr5_2:29466349-29466368 None:intergenic 45.0%
GGTAGATCACACTGAATACC+TGG - chr5_2:29466360-29466379 None:intergenic 45.0%
TGTGATCTACCGTTACGGAA+TGG + chr5_2:29466369-29466388 Msa0766980:CDS 45.0%
TTGTGCTTCATTCGTACGAG+CGG - chr5_2:29466610-29466629 None:intergenic 45.0%
ACTGCTTCCTTGTCCATGAA+AGG + chr5_2:29466678-29466697 Msa0766980:CDS 45.0%
AAACTGGAAAAGGGCCTAGT+GGG + chr5_2:29466703-29466722 Msa0766980:CDS 45.0%
CTAGAATCTGCTTCTGCTGT+AGG - chr5_2:29467041-29467060 None:intergenic 45.0%
TCTGAACTTAAGCATGAGCG+AGG + chr5_2:29467073-29467092 Msa0766980:CDS 45.0%
TTAAGCATGAGCGAGGATGA+AGG + chr5_2:29467080-29467099 Msa0766980:CDS 45.0%
AATGAGATCCTCCTCTGACT+CGG - chr5_2:29467177-29467196 None:intergenic 45.0%
CACAGTGTGCACTTGATCAT+GGG - chr5_2:29467324-29467343 None:intergenic 45.0%
TCACAGTGTGCACTTGATCA+TGG - chr5_2:29467325-29467344 None:intergenic 45.0%
AGTTCAATGGAGGATCCACT+AGG + chr5_2:29467362-29467381 Msa0766980:CDS 45.0%
ACATCCACAAACCAACCTAG+TGG - chr5_2:29467380-29467399 None:intergenic 45.0%
! TTTTCCGGAACAAGAGGCTT+CGG - chr5_2:29467539-29467558 None:intergenic 45.0%
TTTACCTACTCGGACACGAA+AGG + chr5_2:29467586-29467605 Msa0766980:CDS 45.0%
TTACCTACTCGGACACGAAA+GGG + chr5_2:29467587-29467606 Msa0766980:CDS 45.0%
! ATAAAGGTACAAGACCCGGA+AGG - chr5_2:29467658-29467677 None:intergenic 45.0%
! CGGGTCTTGTACCTTTATCA+AGG + chr5_2:29467660-29467679 Msa0766980:CDS 45.0%
TGAAAGCGACAGGTCATTCA+TGG + chr5_2:29467723-29467742 Msa0766980:CDS 45.0%
ACAGGTCATTCATGGCAATC+AGG + chr5_2:29467731-29467750 Msa0766980:CDS 45.0%
AGAAGAAGCTCGACTAGGAA+CGG + chr5_2:29467761-29467780 Msa0766980:CDS 45.0%
! TAACATTGAAGTGGCGTTGG+AGG + chr5_2:29467892-29467911 Msa0766980:CDS 45.0%
GTTGGGGTAAAACAACTCGA+AGG + chr5_2:29467930-29467949 Msa0766980:CDS 45.0%
CACATGATGTTCTCGAGCAT+TGG + chr5_2:29468085-29468104 Msa0766980:three_prime_UTR 45.0%
GAGAGAGAGAGAGAGAAGAG+TGG + chr5_2:29463124-29463143 Msa0766980:five_prime_UTR 50.0%
AGATGTGCTTCTAACGGCCA+TGG + chr5_2:29464077-29464096 Msa0766980:intron 50.0%
ACCAAGATTCAGAGTCTCCC+AGG + chr5_2:29464451-29464470 Msa0766980:CDS 50.0%
TCCTGGGAGACTCTGAATCT+TGG - chr5_2:29464455-29464474 None:intergenic 50.0%
!! TGTGGCTGGCCGCTATTTTA+TGG + chr5_2:29464517-29464536 Msa0766980:CDS 50.0%
CATGCATCTGTGGTGGCATT+TGG - chr5_2:29464586-29464605 None:intergenic 50.0%
CACAGAACATGCATCTGTGG+TGG - chr5_2:29464593-29464612 None:intergenic 50.0%
GCGGATGATGCTTGAACATG+AGG + chr5_2:29464633-29464652 Msa0766980:CDS 50.0%
CTAAAGCTCTCGCATACGCA+GGG - chr5_2:29464731-29464750 None:intergenic 50.0%
ACTAAAGCTCTCGCATACGC+AGG - chr5_2:29464732-29464751 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG + chr5_2:29464736-29464755 Msa0766980:intron 50.0%
CAGAAACCAGATGCCTGTTG+AGG + chr5_2:29464997-29465016 Msa0766980:CDS 50.0%
!! GCATGTTTCTGGCTTTCCTG+CGG + chr5_2:29465078-29465097 Msa0766980:CDS 50.0%
!! CATGTTTCTGGCTTTCCTGC+GGG + chr5_2:29465079-29465098 Msa0766980:CDS 50.0%
TGGCTTTCCTGCGGGAAATT+CGG + chr5_2:29465087-29465106 Msa0766980:CDS 50.0%
! GACAACTGTTTCAGGTGCTG+CGG + chr5_2:29465120-29465139 Msa0766980:CDS 50.0%
! ACAACTGTTTCAGGTGCTGC+GGG + chr5_2:29465121-29465140 Msa0766980:CDS 50.0%
GCGGGTGTTCATTCTCCTTT+AGG + chr5_2:29465139-29465158 Msa0766980:CDS 50.0%
CATCCATCTGGCGATGGAAA+GGG - chr5_2:29465196-29465215 None:intergenic 50.0%
ACATCCATCTGGCGATGGAA+AGG - chr5_2:29465197-29465216 None:intergenic 50.0%
TTTCATCAGCAGGGAGCGAA+AGG - chr5_2:29465285-29465304 None:intergenic 50.0%
!! TAGAGGGAAGACTTGTTGCC+AGG + chr5_2:29465408-29465427 Msa0766980:CDS 50.0%
! GCTCAGATCTTGAAGTGTCC+TGG - chr5_2:29465429-29465448 None:intergenic 50.0%
TCTGGCACTAGCAGTGAGAT+CGG - chr5_2:29465566-29465585 None:intergenic 50.0%
AAACAAGGCTGATGCGTGGA+CGG + chr5_2:29466035-29466054 Msa0766980:CDS 50.0%
! GTCTCACTCTGCTGCTTCTT+GGG + chr5_2:29466179-29466198 Msa0766980:CDS 50.0%
! TCTCACTCTGCTGCTTCTTG+GGG + chr5_2:29466180-29466199 Msa0766980:CDS 50.0%
GAAACTGGAAAAGGGCCTAG+TGG + chr5_2:29466702-29466721 Msa0766980:CDS 50.0%
ATGAGATCCTCCTCTGACTC+GGG - chr5_2:29467176-29467195 None:intergenic 50.0%
GGCTGTTCAACAGCATCTTG+TGG - chr5_2:29467245-29467264 None:intergenic 50.0%
AGATGCTGTTGAACAGCCAC+AGG + chr5_2:29467247-29467266 Msa0766980:CDS 50.0%
CAATGGAGGATCCACTAGGT+TGG + chr5_2:29467366-29467385 Msa0766980:CDS 50.0%
!! GGATCCACTAGGTTGGTTTG+TGG + chr5_2:29467373-29467392 Msa0766980:CDS 50.0%
TTTGAAGGGAAAAGACGGCG+AGG + chr5_2:29467442-29467461 Msa0766980:CDS 50.0%
AAAGACGGCGAGGATGATGA+AGG + chr5_2:29467452-29467471 Msa0766980:CDS 50.0%
GTCCATGACATTGACACTCG+AGG + chr5_2:29467490-29467509 Msa0766980:CDS 50.0%
CTCCTCGAGTGTCAATGTCA+TGG - chr5_2:29467495-29467514 None:intergenic 50.0%
TACCTACTCGGACACGAAAG+GGG + chr5_2:29467588-29467607 Msa0766980:CDS 50.0%
GCAGAAGAGAGACTTCCAGA+GGG + chr5_2:29467628-29467647 Msa0766980:CDS 50.0%
GGAGGGATTATGAAAGCGAC+AGG + chr5_2:29467713-29467732 Msa0766980:CDS 50.0%
! CTTTCATTGGTGACCACAGG+TGG - chr5_2:29467845-29467864 None:intergenic 50.0%
! CTGCTTTCATTGGTGACCAC+AGG - chr5_2:29467848-29467867 None:intergenic 50.0%
!! CAACGGAGTGCTGCTTTCAT+TGG - chr5_2:29467858-29467877 None:intergenic 50.0%
! TTGAAGTGGCGTTGGAGGAT+AGG + chr5_2:29467897-29467916 Msa0766980:CDS 50.0%
TTGGAGGATAGGAGCCTAAC+AGG + chr5_2:29467908-29467927 Msa0766980:CDS 50.0%
AGGATAGGAGCCTAACAGGT+TGG + chr5_2:29467912-29467931 Msa0766980:CDS 50.0%
GGATAGGAGCCTAACAGGTT+GGG + chr5_2:29467913-29467932 Msa0766980:CDS 50.0%
GATAGGAGCCTAACAGGTTG+GGG + chr5_2:29467914-29467933 Msa0766980:CDS 50.0%
TCGAAGGCCTCGAAGACAAA+GGG + chr5_2:29467946-29467965 Msa0766980:CDS 50.0%
ATCAACGGAGGATTACCAGC+CGG - chr5_2:29467977-29467996 None:intergenic 50.0%
GAGAGAGAGAGAAGAGTGGC+TGG + chr5_2:29463128-29463147 Msa0766980:five_prime_UTR 55.0%
AGGAATCCAGCAGTTGTGGC+TGG + chr5_2:29464503-29464522 Msa0766980:CDS 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG + chr5_2:29464737-29464756 Msa0766980:intron 55.0%
ACGATGCCTCAACAGGCATC+TGG - chr5_2:29465006-29465025 None:intergenic 55.0%
GCATAAGCCGAATTTCCCGC+AGG - chr5_2:29465097-29465116 None:intergenic 55.0%
ATCTGGCGATGGAAAGGGAC+CGG - chr5_2:29465191-29465210 None:intergenic 55.0%
! GAGATCGGAGCACTCAGTTG+CGG - chr5_2:29465551-29465570 None:intergenic 55.0%
GCGTCAGGGAACTGACAGTT+GGG + chr5_2:29465633-29465652 Msa0766980:CDS 55.0%
TGGAAAGGGGGGAATTCCCT+CGG + chr5_2:29465690-29465709 Msa0766980:CDS 55.0%
TGTTTGAGGACTTGCGGCAC+AGG - chr5_2:29465931-29465950 None:intergenic 55.0%
TGTGCCGCAAGTCCTCAAAC+AGG + chr5_2:29465930-29465949 Msa0766980:CDS 55.0%
GTCGAAACAAGGCTGATGCG+TGG + chr5_2:29466031-29466050 Msa0766980:CDS 55.0%
GGAGCAGCTGGAAAAAGACC+AGG - chr5_2:29466135-29466154 None:intergenic 55.0%
! GGTCTCACTCTGCTGCTTCT+TGG + chr5_2:29466178-29466197 Msa0766980:CDS 55.0%
! CTCTGCTGCTTCTTGGGGAA+TGG + chr5_2:29466185-29466204 Msa0766980:CDS 55.0%
TGGATGGAGACGCGTTGTCA+TGG + chr5_2:29466571-29466590 Msa0766980:CDS 55.0%
GGAGCACGAATCGACACAGA+GGG - chr5_2:29466888-29466907 None:intergenic 55.0%
TGGAGCACGAATCGACACAG+AGG - chr5_2:29466889-29466908 None:intergenic 55.0%
CGGCGAGGATGATGAAGGAT+TGG + chr5_2:29467457-29467476 Msa0766980:CDS 55.0%
CATGCCGAAGCCTCTTGTTC+CGG + chr5_2:29467532-29467551 Msa0766980:CDS 55.0%
GGCAGAAGAGAGACTTCCAG+AGG + chr5_2:29467627-29467646 Msa0766980:CDS 55.0%
CTTCCAGAGGGACATCCTTC+CGG + chr5_2:29467640-29467659 Msa0766980:CDS 55.0%
TTCCAGAGGGACATCCTTCC+GGG + chr5_2:29467641-29467660 Msa0766980:CDS 55.0%
AGCTCGACTAGGAACGGTAG+TGG + chr5_2:29467767-29467786 Msa0766980:CDS 55.0%
GCTCGACTAGGAACGGTAGT+GGG + chr5_2:29467768-29467787 Msa0766980:CDS 55.0%
!! GACTAGGAACGGTAGTGGGA+GGG + chr5_2:29467772-29467791 Msa0766980:CDS 55.0%
!! ACTAGGAACGGTAGTGGGAG+GGG + chr5_2:29467773-29467792 Msa0766980:CDS 55.0%
GAAGAAGGGGTAACCGGTGT+TGG - chr5_2:29467818-29467837 None:intergenic 55.0%
CTCGAAGGCCTCGAAGACAA+AGG + chr5_2:29467945-29467964 Msa0766980:CDS 55.0%
CGAAGGCCTCGAAGACAAAG+GGG + chr5_2:29467947-29467966 Msa0766980:CDS 55.0%
TCGAAGACAAAGGGGTCCAC+CGG + chr5_2:29467955-29467974 Msa0766980:CDS 55.0%
CATACGCAGGGTCTGGGAAG+GGG - chr5_2:29464719-29464738 None:intergenic 60.0%
GCATACGCAGGGTCTGGGAA+GGG - chr5_2:29464720-29464739 None:intergenic 60.0%
CTCTCGCATACGCAGGGTCT+GGG - chr5_2:29464725-29464744 None:intergenic 60.0%
GGTCCCTTTCCATCGCCAGA+TGG + chr5_2:29465190-29465209 Msa0766980:CDS 60.0%
CGCGTCAGGGAACTGACAGT+TGG + chr5_2:29465632-29465651 Msa0766980:CDS 60.0%
AAAGGGGGGAATTCCCTCGG+TGG + chr5_2:29465693-29465712 Msa0766980:CDS 60.0%
TAACCTGCCTCGACCACCGA+GGG - chr5_2:29465709-29465728 None:intergenic 60.0%
TTGGCGCCAGATGAAGACCC+TGG - chr5_2:29466402-29466421 None:intergenic 60.0%
AGGGTCTTCATCTGGCGCCA+AGG + chr5_2:29466401-29466420 Msa0766980:CDS 60.0%
!! CTCTGACTCGGGAACTGCAG+GGG - chr5_2:29467165-29467184 None:intergenic 60.0%
!! CCTCTGACTCGGGAACTGCA+GGG - chr5_2:29467166-29467185 None:intergenic 60.0%
!! TCCTCTGACTCGGGAACTGC+AGG - chr5_2:29467167-29467186 None:intergenic 60.0%
TGCAGTTCCCGAGTCAGAGG+AGG + chr5_2:29467166-29467185 Msa0766980:CDS 60.0%
GAAAGGGGCCTGCAAGGAGA+GGG + chr5_2:29467603-29467622 Msa0766980:CDS 60.0%
TTCTGCCTCCCTCTCCTTGC+AGG - chr5_2:29467614-29467633 None:intergenic 60.0%
!! CGACTAGGAACGGTAGTGGG+AGG + chr5_2:29467771-29467790 Msa0766980:CDS 60.0%
!! GAACGGTAGTGGGAGGGGAA+GGG + chr5_2:29467778-29467797 Msa0766980:CDS 60.0%
!! AACGGTAGTGGGAGGGGAAG+GGG + chr5_2:29467779-29467798 Msa0766980:CDS 60.0%
GGCGAGGAAGAAGGGGTAAC+CGG - chr5_2:29467824-29467843 None:intergenic 60.0%
CACAGGTGGCGAGGAAGAAG+GGG - chr5_2:29467831-29467850 None:intergenic 60.0%
CCACAGGTGGCGAGGAAGAA+GGG - chr5_2:29467832-29467851 None:intergenic 60.0%
ACCACAGGTGGCGAGGAAGA+AGG - chr5_2:29467833-29467852 None:intergenic 60.0%
! ATTGGTGACCACAGGTGGCG+AGG - chr5_2:29467840-29467859 None:intergenic 60.0%
GGTGGACCCCTTTGTCTTCG+AGG - chr5_2:29467956-29467975 None:intergenic 60.0%
AACGGAGGATTACCAGCCGG+TGG - chr5_2:29467974-29467993 None:intergenic 60.0%
TAGCGGCCAGCCACAACTGC+TGG - chr5_2:29464512-29464531 None:intergenic 65.0%
CGCATACGCAGGGTCTGGGA+AGG - chr5_2:29464721-29464740 None:intergenic 65.0%
GCTCTCGCATACGCAGGGTC+TGG - chr5_2:29464726-29464745 None:intergenic 65.0%
GCGATGGAAAGGGACCGGCT+TGG - chr5_2:29465186-29465205 None:intergenic 65.0%
GGGAATTCCCTCGGTGGTCG+AGG + chr5_2:29465699-29465718 Msa0766980:CDS 65.0%
ATTCCCTCGGTGGTCGAGGC+AGG + chr5_2:29465703-29465722 Msa0766980:CDS 65.0%
CTAACCTGCCTCGACCACCG+AGG - chr5_2:29465710-29465729 None:intergenic 65.0%
CTCGGTGGTCGAGGCAGGTT+AGG + chr5_2:29465708-29465727 Msa0766980:intron 65.0%
CCCTGCAGTTCCCGAGTCAG+AGG + chr5_2:29467163-29467182 Msa0766980:CDS 65.0%
GGCCCCTTTCGTGTCCGAGT+AGG - chr5_2:29467593-29467612 None:intergenic 65.0%
GGACACGAAAGGGGCCTGCA+AGG + chr5_2:29467597-29467616 Msa0766980:CDS 65.0%
CGAAAGGGGCCTGCAAGGAG+AGG + chr5_2:29467602-29467621 Msa0766980:CDS 65.0%
GACCCGGAAGGATGTCCCTC+TGG - chr5_2:29467646-29467665 None:intergenic 65.0%
!! GGAACGGTAGTGGGAGGGGA+AGG + chr5_2:29467777-29467796 Msa0766980:CDS 65.0%
!! ACGGTAGTGGGAGGGGAAGG+GGG + chr5_2:29467780-29467799 Msa0766980:CDS 65.0%
!! GTAACCGGTGTTGGCCGCCT+CGG - chr5_2:29467809-29467828 None:intergenic 65.0%
CCCTTCTTCCTCGCCACCTG+TGG + chr5_2:29467829-29467848 Msa0766980:CDS 65.0%
AGACAAAGGGGTCCACCGGC+TGG + chr5_2:29467959-29467978 Msa0766980:CDS 65.0%
CGGGAACTGCAGGGGCTTCC+AGG - chr5_2:29467157-29467176 None:intergenic 70.0%
AGGGGCCTGCAAGGAGAGGG+AGG + chr5_2:29467606-29467625 Msa0766980:CDS 70.0%
! GTAGTGGGAGGGGAAGGGGG+AGG + chr5_2:29467783-29467802 Msa0766980:CDS 70.0%
GAGGCCGAGGCGGCCAACAC+CGG + chr5_2:29467802-29467821 Msa0766980:CDS 75.0%
! GGAGGGGAAGGGGGAGGCCG+AGG + chr5_2:29467789-29467808 Msa0766980:CDS 80.0%
! GGGGAAGGGGGAGGCCGAGG+CGG + chr5_2:29467792-29467811 Msa0766980:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29462910 29468269 29462910 ID=Msa0766980;Name=Msa0766980
chr5_2 mRNA 29462910 29468269 29462910 ID=Msa0766980-mRNA-1;Parent=Msa0766980;Name=Msa0766980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=558|1|1|1|0.66|0.5|4|260|1043
chr5_2 exon 29462910 29463465 29462910 ID=Msa0766980-mRNA-1:exon:11226;Parent=Msa0766980-mRNA-1
chr5_2 exon 29464443 29464672 29464443 ID=Msa0766980-mRNA-1:exon:11227;Parent=Msa0766980-mRNA-1
chr5_2 exon 29464926 29465724 29464926 ID=Msa0766980-mRNA-1:exon:11228;Parent=Msa0766980-mRNA-1
chr5_2 exon 29465905 29468269 29465905 ID=Msa0766980-mRNA-1:exon:11229;Parent=Msa0766980-mRNA-1
chr5_2 five_prime_UTR 29462910 29463465 29462910 ID=Msa0766980-mRNA-1:five_prime_utr;Parent=Msa0766980-mRNA-1
chr5_2 five_prime_UTR 29464443 29464444 29464443 ID=Msa0766980-mRNA-1:five_prime_utr;Parent=Msa0766980-mRNA-1
chr5_2 CDS 29464445 29464672 29464445 ID=Msa0766980-mRNA-1:cds;Parent=Msa0766980-mRNA-1
chr5_2 CDS 29464926 29465724 29464926 ID=Msa0766980-mRNA-1:cds;Parent=Msa0766980-mRNA-1
chr5_2 CDS 29465905 29468009 29465905 ID=Msa0766980-mRNA-1:cds;Parent=Msa0766980-mRNA-1
chr5_2 three_prime_UTR 29468010 29468269 29468010 ID=Msa0766980-mRNA-1:three_prime_utr;Parent=Msa0766980-mRNA-1
Gene Sequence

>Msa0766980

ATGGGAACCAAGATTCAGAGTCTCCCAGGATATTACTCAATGATGAGAGATCTTAATGAGGAATCCAGCAGTTGTGGCTGGCCGCTATTTTATGGCGATAAAACACCAACAAATGGGAAGTATTATGATAGTTATCTTCCAAATGCCACCACAGATGCATGTTCTGTGCATGATAAGGATGTTGTGAAGCGGATGATGCTTGAACATGAGGCTATATTTAAGAATCAGGTTTATGAACTCCACCGTTTATACAGAATACAAAGGGATTTGATGAATGATTTCAAAAGGAAAGAGTTACTCAGAAACCAGATGCCTGTTGAGGCATCGTTTTGTTCAGGTCCCTTGACATCTCAAGTAACAACTGAAGATGGAAGAAAATGGCATGTTTCTGGCTTTCCTGCGGGAAATTCGGCTTATGCTAAGACAACTGTTTCAGGTGCTGCGGGTGTTCATTCTCCTTTAGGTTCTGTTCAAGGAATAAGCAACCAAGCCGGTCCCTTTCCATCGCCAGATGGATGTAGTTTAAAAGATGTTAGCATGCTCGAGTCCACCAGACCATCAAAAGTGAGAAGAAAAATGTTTGACCTTTCGCTCCCTGCTGATGAAAACGTTGATTCTGACGAAAGTGATGAAAAGCTCAGCGATGAAAAGACAAGTGGTTCGACATTATTTCTTCCTGATAGAAGTTGTAAAAACGGAAAGGAGGATGATAGAGGGAAGACTTGTTGCCAGGACACTTCAAGATCTGAGCAGTTTTTAAGAAGAAACGGTTTCGCCGACTTAAATGAACCTGTTCAAGTGGATGAAACATATGATTCTCCTTTTGTTCATGTTCCGAGTAATTCAGTTGCCGCAACTGAGTGCTCCGATCTCACTGCTAGTGCCAGACAAAAGTTACAGTTTTTTGGTTCGTCCAGAGAACATTTACTAAACTCGCGTCAGGGAACTGACAGTTGGGCTAGAAACAATGGATATTTGGAGAATAATGGGAATGGAAAGGGGGGAATTCCCTCGGTGGTCGAGGCAGGGCATGCTAAAAACAACTTACAACCTGTGCCGCAAGTCCTCAAACAGGAGAAATTGCTTTTATCTTCGCAAACAATGCAGCACTCGTACATGAAAGCACATGAACCTGCATCTGATTATGTAGATGGTCGAAACAAGGCTGATGCGTGGACGGAAAAGACAGCTAGTGAAAGAAACCATGAATACTCCGTTAATAAACATACCGAGTCCGTGTTACCTTTACATAGACCTGGTCTTTTTCCAGCTGCTCCTTCCTATGATTTATCGAGGTCTTGGTCTCACTCTGCTGCTTCTTGGGGAATGGCAAGTTGCAGCCTAAGCCAGAAGATGATGTCAGTTCAGACACCTTCATGTCTAAATTTGTCCGGTTCAATCAATAGGAATTTCCAGTCACAACAGAGTAATGGGAAATTGGAGCATTGTTGGCCTCTAAATATCAATTCCAAGCCTAATCCAGGTATTCAGTGTGATCTACCGTTACGGAATGGATTTTATCCAGGGTCTTCATCTGGCGCCAAGGAACCATCGATGAATATGTCTTCCATTAGCTTTGACTATCCAAATCACAATAATGAAAAGAAATCTGGAAAAGACATTGACTTAAATGTGATTCTTACGAATGGTTCATACAATAACAACTTAGTTCCTGAGTCAAGTGTTGGGATAATGGATGGAGACGCGTTGTCATGGCTTAGAGCAAAAACCGCTCGTACGAATGAAGCACAAAATACCGATAGAAGCTCCATTACTGCAGAAGAGACAAGTTTTCTTCATACTGCTTCCTTGTCCATGAAAGGTGAAACTGGAAAAGGGCCTAGTGGGAATTTTATGCATGGTGTAACTTCAGTTTCGTGCTCTAATAATATTGACCAAAGGAGGATTGAGGTAAGTAAAAGCTCTAGTACTAAGAAAATTCTTGGTGTTCCGATATTTGATATGCCTTATATCTCTCCAAAGAAGGAGTTGTCTTCAATCACTTCTCCCTCTGTGTCGATTCGTGCTCCATCTGAAGCAGAACTGGTGGTAAATAAGCACAAAAACCGGATGCTTGATATCAACTTGCCTTGTGATGCTAATGATCTCGAGTTTGACAAAGAAGGTTTCATTGAAACCGTTGTTAGTAAGACAAGATCTCCTACAGCAGAAGCAGATTCTAGAAATCAAATTGATCTGAACTTAAGCATGAGCGAGGATGAAGGATCATTCACAACTATTCCAAGTGCCGATACAAAAATGAAGGATGAGATAGACCTGGAAGCCCCTGCAGTTCCCGAGTCAGAGGAGGATCTCATTCCAGAAGAAAACAAGCTTGATACTTCTCTAGTGTCACCCCAAATTCCACAAGATGCTGTTGAACAGCCACAGGATGAACTTATGAGAAATGCAGCTGAAGCAATTGTCGTCCTTTCATCTTTTTCCCATGATCAAGTGCACACTGTGATCGATAGTCCATCTGAAAGTTCAATGGAGGATCCACTAGGTTGGTTTGTGGATGTAGTTTCCTCATGTAAAGATAATCGTGAAAGCAAGTGCAATAATTTGAAGGGAAAAGACGGCGAGGATGATGAAGGATTGGATTATTTTGAGTCCATGACATTGACACTCGAGGAGATGAAAGAAGAAGACTACATGCCGAAGCCTCTTGTTCCGGAAAACTTCAAAGTGGAAGAAACAGCAAGTACTTTACCTACTCGGACACGAAAGGGGCCTGCAAGGAGAGGGAGGCAGAAGAGAGACTTCCAGAGGGACATCCTTCCGGGTCTTGTACCTTTATCAAGGAATGAAGTAACAGAAGATATTCAGACATTTGGAGGGATTATGAAAGCGACAGGTCATTCATGGCAATCAGGATTAACTAGAAGAAGCTCGACTAGGAACGGTAGTGGGAGGGGAAGGGGGAGGCCGAGGCGGCCAACACCGGTTACCCCTTCTTCCTCGCCACCTGTGGTCACCAATGAAAGCAGCACTCCGTTGATGCAGCAACTCAATAACATTGAAGTGGCGTTGGAGGATAGGAGCCTAACAGGTTGGGGTAAAACAACTCGAAGGCCTCGAAGACAAAGGGGTCCACCGGCTGGTAATCCTCCGTTGATCCCAATAACATAA
Protein sequence

>Msa0766980

MGTKIQSLPGYYSMMRDLNEESSSCGWPLFYGDKTPTNGKYYDSYLPNATTDACSVHDKDVVKRMMLEHEAIFKNQVYELHRLYRIQRDLMNDFKRKELLRNQMPVEASFCSGPLTSQVTTEDGRKWHVSGFPAGNSAYAKTTVSGAAGVHSPLGSVQGISNQAGPFPSPDGCSLKDVSMLESTRPSKVRRKMFDLSLPADENVDSDESDEKLSDEKTSGSTLFLPDRSCKNGKEDDRGKTCCQDTSRSEQFLRRNGFADLNEPVQVDETYDSPFVHVPSNSVAATECSDLTASARQKLQFFGSSREHLLNSRQGTDSWARNNGYLENNGNGKGGIPSVVEAGHAKNNLQPVPQVLKQEKLLLSSQTMQHSYMKAHEPASDYVDGRNKADAWTEKTASERNHEYSVNKHTESVLPLHRPGLFPAAPSYDLSRSWSHSAASWGMASCSLSQKMMSVQTPSCLNLSGSINRNFQSQQSNGKLEHCWPLNINSKPNPGIQCDLPLRNGFYPGSSSGAKEPSMNMSSISFDYPNHNNEKKSGKDIDLNVILTNGSYNNNLVPESSVGIMDGDALSWLRAKTARTNEAQNTDRSSITAEETSFLHTASLSMKGETGKGPSGNFMHGVTSVSCSNNIDQRRIEVSKSSSTKKILGVPIFDMPYISPKKELSSITSPSVSIRAPSEAELVVNKHKNRMLDINLPCDANDLEFDKEGFIETVVSKTRSPTAEADSRNQIDLNLSMSEDEGSFTTIPSADTKMKDEIDLEAPAVPESEEDLIPEENKLDTSLVSPQIPQDAVEQPQDELMRNAAEAIVVLSSFSHDQVHTVIDSPSESSMEDPLGWFVDVVSSCKDNRESKCNNLKGKDGEDDEGLDYFESMTLTLEEMKEEDYMPKPLVPENFKVEETASTLPTRTRKGPARRGRQKRDFQRDILPGLVPLSRNEVTEDIQTFGGIMKATGHSWQSGLTRRSSTRNGSGRGRGRPRRPTPVTPSSSPPVVTNESSTPLMQQLNNIEVALEDRSLTGWGKTTRRPRRQRGPPAGNPPLIPIT*