Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770660 | A0A072TP22 | 76.503 | 183 | 20 | 3 | 1 | 163 | 60 | 239 | 1.30e-85 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0770660 | Msa1438250 | 0.806866 | 6.681432e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770660 | MtrunA17_Chr8g0355351 | 76.503 | 183 | 20 | 3 | 1 | 163 | 60 | 239 | 2.51e-89 | 260 |
| Msa0770660 | MtrunA17_Chr1g0212741 | 59.563 | 183 | 52 | 5 | 1 | 162 | 58 | 239 | 2.94e-63 | 194 |
| Msa0770660 | MtrunA17_Chr7g0229201 | 60.109 | 183 | 51 | 3 | 1 | 162 | 57 | 238 | 4.54e-62 | 191 |
| Msa0770660 | MtrunA17_Chr0c02g0489781 | 60.109 | 183 | 51 | 3 | 1 | 162 | 57 | 238 | 4.54e-62 | 191 |
| Msa0770660 | MtrunA17_Chr1g0212771 | 66.897 | 145 | 12 | 1 | 1 | 109 | 56 | 200 | 1.15e-61 | 189 |
| Msa0770660 | MtrunA17_Chr7g0229211 | 44.889 | 225 | 53 | 6 | 1 | 162 | 55 | 271 | 9.57e-46 | 150 |
| Msa0770660 | MtrunA17_Chr8g0355371 | 42.157 | 204 | 58 | 5 | 1 | 144 | 55 | 258 | 3.57e-39 | 133 |
| Msa0770660 | MtrunA17_Chr0c02g0489791 | 40.580 | 207 | 60 | 4 | 1 | 144 | 55 | 261 | 2.24e-38 | 131 |
| Msa0770660 | MtrunA17_Chr1g0212761 | 75.342 | 73 | 18 | 0 | 1 | 73 | 54 | 126 | 1.02e-31 | 110 |
| Msa0770660 | MtrunA17_Chr1g0212731 | 38.667 | 150 | 59 | 7 | 1 | 139 | 63 | 190 | 2.30e-20 | 83.2 |
| Msa0770660 | MtrunA17_Chr1g0212781 | 47.170 | 106 | 35 | 4 | 55 | 139 | 178 | 283 | 3.52e-19 | 83.2 |
| Msa0770660 | MtrunA17_Chr7g0239901 | 27.684 | 177 | 104 | 5 | 2 | 162 | 91 | 259 | 4.07e-16 | 74.7 |
| Msa0770660 | MtrunA17_Chr7g0241421 | 33.526 | 173 | 91 | 5 | 3 | 161 | 68 | 230 | 5.33e-16 | 74.3 |
| Msa0770660 | MtrunA17_Chr7g0241421 | 45.833 | 72 | 38 | 1 | 84 | 155 | 403 | 473 | 1.51e-12 | 64.3 |
| Msa0770660 | MtrunA17_Chr7g0241251 | 29.775 | 178 | 104 | 6 | 3 | 163 | 66 | 239 | 8.99e-15 | 70.9 |
| Msa0770660 | MtrunA17_Chr7g0239911 | 29.714 | 175 | 104 | 7 | 2 | 162 | 63 | 232 | 4.97e-14 | 68.6 |
| Msa0770660 | MtrunA17_Chr7g0239921 | 30.508 | 177 | 102 | 5 | 2 | 162 | 90 | 261 | 1.37e-13 | 67.4 |
| Msa0770660 | MtrunA17_Chr7g0241171 | 32.051 | 156 | 86 | 4 | 1 | 155 | 4 | 140 | 4.76e-13 | 63.2 |
| Msa0770660 | MtrunA17_Chr1g0166321 | 31.383 | 188 | 95 | 7 | 3 | 162 | 68 | 249 | 4.79e-13 | 65.9 |
| Msa0770660 | MtrunA17_Chr7g0241161 | 30.201 | 149 | 87 | 5 | 8 | 155 | 288 | 420 | 7.25e-13 | 65.1 |
| Msa0770660 | MtrunA17_Chr7g0238971 | 31.073 | 177 | 101 | 8 | 2 | 162 | 65 | 236 | 1.08e-12 | 64.7 |
| Msa0770660 | MtrunA17_Chr7g0237451 | 29.714 | 175 | 101 | 5 | 3 | 162 | 54 | 221 | 1.95e-12 | 63.9 |
| Msa0770660 | MtrunA17_Chr7g0241211 | 44.000 | 75 | 41 | 1 | 81 | 155 | 110 | 183 | 2.28e-12 | 62.0 |
| Msa0770660 | MtrunA17_Chr7g0239731 | 31.395 | 172 | 101 | 7 | 2 | 161 | 62 | 228 | 2.84e-12 | 63.5 |
| Msa0770660 | MtrunA17_Chr4g0008481 | 30.000 | 180 | 102 | 3 | 1 | 160 | 72 | 247 | 2.86e-12 | 63.5 |
| Msa0770660 | MtrunA17_Chr7g0241291 | 43.421 | 76 | 42 | 1 | 81 | 156 | 236 | 310 | 3.80e-12 | 62.8 |
| Msa0770660 | MtrunA17_Chr7g0239891 | 31.395 | 172 | 95 | 7 | 2 | 160 | 64 | 225 | 4.57e-12 | 62.8 |
| Msa0770660 | MtrunA17_Chr7g0239851 | 31.148 | 183 | 93 | 9 | 2 | 162 | 63 | 234 | 5.25e-12 | 62.8 |
| Msa0770660 | MtrunA17_Chr7g0241331 | 28.796 | 191 | 91 | 8 | 4 | 160 | 307 | 486 | 1.17e-11 | 61.6 |
| Msa0770660 | MtrunA17_Chr7g0238961 | 30.457 | 197 | 96 | 9 | 2 | 162 | 318 | 509 | 2.45e-11 | 60.8 |
| Msa0770660 | MtrunA17_Chr4g0007631 | 29.545 | 176 | 104 | 5 | 1 | 160 | 69 | 240 | 5.33e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770660 | AT3G09110.1 | 26.667 | 180 | 106 | 4 | 1 | 162 | 61 | 232 | 1.60e-12 | 64.3 |
Find 33 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCAAATTTACACTTATT+TGG | 0.091037 | 5_2:-41821461 | None:intergenic |
| GAAAGATGTTATCACATTTA+TGG | 0.180834 | 5_2:+41824197 | Msa0770660:CDS |
| CGTCATCAATGTCTTCATTC+TGG | 0.199422 | 5_2:-41821409 | None:intergenic |
| GGTTTGGTTGCATGTAATTC+TGG | 0.215415 | 5_2:-41821319 | None:intergenic |
| AATGGAATGGTTGGTAGTTT+AGG | 0.275746 | 5_2:+41821266 | None:intergenic |
| GTGGAAGAGCTTTGAGCTCT+TGG | 0.285273 | 5_2:-41821365 | None:intergenic |
| ATTTATGGTGATGGATGATT+TGG | 0.351782 | 5_2:+41824212 | Msa0770660:CDS |
| AGGACATCCTTAGTTTGGTT+TGG | 0.370323 | 5_2:-41821335 | None:intergenic |
| TTAGCAGGACATCCTTAGTT+TGG | 0.377274 | 5_2:-41821340 | None:intergenic |
| TGGAAGAGCTTTGAGCTCTT+GGG | 0.383995 | 5_2:-41821364 | None:intergenic |
| GTCATCAATGTCTTCATTCT+GGG | 0.395038 | 5_2:-41821408 | None:intergenic |
| TTTGAGCTCTTGGGTTTAGC+AGG | 0.423021 | 5_2:-41821355 | None:intergenic |
| CAACAGTGTGATGCTTGATA+TGG | 0.427262 | 5_2:-41824253 | None:intergenic |
| AACACTTGTCAATACCATCT+TGG | 0.428370 | 5_2:-41824493 | None:intergenic |
| GATTGAAACCTTGCAAGAAA+AGG | 0.450000 | 5_2:+41824296 | Msa0770660:CDS |
| AGAGTTTCCAATATTAAAAG+TGG | 0.455596 | 5_2:+41824168 | Msa0770660:CDS |
| CAAGAAAAGGTTGTTGAGAT+GGG | 0.463384 | 5_2:+41824309 | Msa0770660:CDS |
| AGCTCTTCCACTGAAATCTC+AGG | 0.471238 | 5_2:+41821377 | Msa0770660:CDS |
| GCAAGAAAAGGTTGTTGAGA+TGG | 0.482167 | 5_2:+41824308 | Msa0770660:CDS |
| GTTGCATGTAATTCTGGTTG+AGG | 0.483757 | 5_2:-41821313 | None:intergenic |
| CAATGTCTTCATTCTGGGTA+AGG | 0.483882 | 5_2:-41821403 | None:intergenic |
| GACATTGATGACGAAGTTGA+AGG | 0.512307 | 5_2:+41821419 | Msa0770660:CDS |
| CATGCAACCAAACCAAACTA+AGG | 0.514862 | 5_2:+41821328 | Msa0770660:CDS |
| TGTTATCACATTTATGGTGA+TGG | 0.515514 | 5_2:+41824203 | Msa0770660:CDS |
| ATAGGGTATCAAGTTGCTAA+AGG | 0.526772 | 5_2:+41824458 | Msa0770660:intron |
| CTAAGCACAAATGGAATGGT+TGG | 0.538348 | 5_2:+41821257 | None:intergenic |
| GGCTTCTCTGCAATCCAAGA+TGG | 0.558204 | 5_2:+41824479 | Msa0770660:CDS |
| GATGCTTGATATGGTTGACA+TGG | 0.564889 | 5_2:-41824244 | None:intergenic |
| GAGTTTCCAATATTAAAAGT+GGG | 0.586647 | 5_2:+41824169 | Msa0770660:CDS |
| TGTTGAGATGGGAATGGATG+AGG | 0.588340 | 5_2:+41824320 | Msa0770660:CDS |
| AAAGGTTGTTGAGATGGGAA+TGG | 0.615414 | 5_2:+41824314 | Msa0770660:CDS |
| ATGCTTGATATGGTTGACAT+GGG | 0.655911 | 5_2:-41824243 | None:intergenic |
| AAGGAAGCCTGAGATTTCAG+TGG | 0.655993 | 5_2:-41821384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATCTAATGTAGAAA+AGG | - | chr5_2:41821792-41821811 | None:intergenic | 15.0% |
| !! | ATAATAATCTAATGTAGAAA+AGG | - | chr5_2:41821792-41821811 | None:intergenic | 15.0% |
| !! | ATAATAATCTAATGTAGAAA+AGG | - | chr5_2:41821792-41821811 | None:intergenic | 15.0% |
| !!! | TTTCTTTCTATTTTTGTAAT+AGG | + | chr5_2:41824440-41824459 | Msa0770660:intron | 15.0% |
| !!! | TTCTTTCTATTTTTGTAATA+GGG | + | chr5_2:41824441-41824460 | Msa0770660:intron | 15.0% |
| !! | ACCTATAAATAGACTTATAT+GGG | - | chr5_2:41821724-41821743 | None:intergenic | 20.0% |
| !! | AGATTATTATAGATGTTTCT+AGG | + | chr5_2:41821802-41821821 | Msa0770660:intron | 20.0% |
| !! | CAAACAAAAAAAAACTAAGA+AGG | - | chr5_2:41822453-41822472 | None:intergenic | 20.0% |
| !! | TGCAATATCAATAATATTGA+AGG | - | chr5_2:41822741-41822760 | None:intergenic | 20.0% |
| !! | ACCTATAAATAGACTTATAT+GGG | - | chr5_2:41821724-41821743 | None:intergenic | 20.0% |
| !! | AGATTATTATAGATGTTTCT+AGG | + | chr5_2:41821802-41821821 | Msa0770660:intron | 20.0% |
| !! | CAAACAAAAAAAAACTAAGA+AGG | - | chr5_2:41822453-41822472 | None:intergenic | 20.0% |
| !! | ACCTATAAATAGACTTATAT+GGG | - | chr5_2:41821724-41821743 | None:intergenic | 20.0% |
| !! | AGATTATTATAGATGTTTCT+AGG | + | chr5_2:41821802-41821821 | Msa0770660:intron | 20.0% |
| ! | ACTGCAAATTTACACTTATT+TGG | - | chr5_2:41821464-41821483 | None:intergenic | 25.0% |
| ! | TGCAATGTCAATAATATTGA+AGG | - | chr5_2:41821668-41821687 | None:intergenic | 25.0% |
| ! | ACCCATATAAGTCTATTTAT+AGG | + | chr5_2:41821720-41821739 | Msa0770660:intron | 25.0% |
| ! | CACCTATAAATAGACTTATA+TGG | - | chr5_2:41821725-41821744 | None:intergenic | 25.0% |
| !!! | TTCTAGAACTAGAATAATCT+AGG | + | chr5_2:41821756-41821775 | Msa0770660:intron | 25.0% |
| ! | AGATTGTTCTATTAATGTCT+AGG | - | chr5_2:41821839-41821858 | None:intergenic | 25.0% |
| ! | AAGACCAATAACAAATATCA+TGG | - | chr5_2:41822086-41822105 | None:intergenic | 25.0% |
| ! | GTTATAGAAGAACATATAGT+TGG | + | chr5_2:41822561-41822580 | Msa0770660:intron | 25.0% |
| ! | TTATTGATATTGCATCTCAA+AGG | + | chr5_2:41822747-41822766 | Msa0770660:intron | 25.0% |
| ! | ACCCATATAAGTCTATTTAT+AGG | + | chr5_2:41821720-41821739 | Msa0770660:intron | 25.0% |
| ! | CACCTATAAATAGACTTATA+TGG | - | chr5_2:41821725-41821744 | None:intergenic | 25.0% |
| !!! | TTCTAGAACTAGAATAATCT+AGG | + | chr5_2:41821756-41821775 | Msa0770660:intron | 25.0% |
| ! | AGATTGTTCTATTAATGTCT+AGG | - | chr5_2:41821839-41821858 | None:intergenic | 25.0% |
| ! | AAGACCAATAACAAATATCA+TGG | - | chr5_2:41822086-41822105 | None:intergenic | 25.0% |
| ! | GTTATAGAAGAACATATAGT+TGG | + | chr5_2:41822561-41822580 | Msa0770660:intron | 25.0% |
| ! | TGCAATGTCAATAATATTGA+AGG | - | chr5_2:41821668-41821687 | None:intergenic | 25.0% |
| ! | ACCCATATAAGTCTATTTAT+AGG | + | chr5_2:41821720-41821739 | Msa0770660:intron | 25.0% |
| ! | CACCTATAAATAGACTTATA+TGG | - | chr5_2:41821725-41821744 | None:intergenic | 25.0% |
| !!! | TTCTAGAACTAGAATAATCT+AGG | + | chr5_2:41821756-41821775 | Msa0770660:intron | 25.0% |
| ! | AGATTGTTCTATTAATGTCT+AGG | - | chr5_2:41821839-41821858 | None:intergenic | 25.0% |
| ! | AGAGTTTCCAATATTAAAAG+TGG | + | chr5_2:41824168-41824187 | Msa0770660:CDS | 25.0% |
| ! | GAGTTTCCAATATTAAAAGT+GGG | + | chr5_2:41824169-41824188 | Msa0770660:CDS | 25.0% |
| ! | GAAAGATGTTATCACATTTA+TGG | + | chr5_2:41824197-41824216 | Msa0770660:CDS | 25.0% |
| ATTAGTGATGAGCATATTGT+AGG | + | chr5_2:41821615-41821634 | Msa0770660:intron | 30.0% | |
| TTATTGACATTGCATCTCAA+AGG | + | chr5_2:41821674-41821693 | Msa0770660:intron | 30.0% | |
| ATTGCATCTCAAAGGTTTAA+AGG | + | chr5_2:41821682-41821701 | Msa0770660:intron | 30.0% | |
| AATGTAGAAAAGGCAAACAA+AGG | - | chr5_2:41821782-41821801 | None:intergenic | 30.0% | |
| ! | AGTTTTCGAAATATGCATCA+AGG | - | chr5_2:41821950-41821969 | None:intergenic | 30.0% |
| ATAACAAATATCATGGCAAG+AGG | - | chr5_2:41822079-41822098 | None:intergenic | 30.0% | |
| !! | CTTGCCATGATATTTGTTAT+TGG | + | chr5_2:41822079-41822098 | Msa0770660:intron | 30.0% |
| ATTGTTGAAGATTTCTGACA+GGG | + | chr5_2:41822167-41822186 | Msa0770660:intron | 30.0% | |
| !! | CTCCATTTTTATTTATTGCC+TGG | + | chr5_2:41822318-41822337 | Msa0770660:intron | 30.0% |
| GTCCAGGCAATAAATAAAAA+TGG | - | chr5_2:41822323-41822342 | None:intergenic | 30.0% | |
| !!! | TTGAGTTTCTTTTTTGCCAT+AGG | + | chr5_2:41822360-41822379 | Msa0770660:intron | 30.0% |
| AAAAACTAAGAAGGCTATAG+AGG | - | chr5_2:41822444-41822463 | None:intergenic | 30.0% | |
| ATTAGTGATGAGCATATTGT+AGG | + | chr5_2:41821615-41821634 | Msa0770660:intron | 30.0% | |
| ATTGCATCTCAAAGGTTTAA+AGG | + | chr5_2:41821682-41821701 | Msa0770660:intron | 30.0% | |
| AATGTAGAAAAGGCAAACAA+AGG | - | chr5_2:41821782-41821801 | None:intergenic | 30.0% | |
| ! | AGTTTTCGAAATATGCATCA+AGG | - | chr5_2:41821950-41821969 | None:intergenic | 30.0% |
| ATAACAAATATCATGGCAAG+AGG | - | chr5_2:41822079-41822098 | None:intergenic | 30.0% | |
| !! | CTTGCCATGATATTTGTTAT+TGG | + | chr5_2:41822079-41822098 | Msa0770660:intron | 30.0% |
| ATTGTTGAAGATTTCTGACA+GGG | + | chr5_2:41822167-41822186 | Msa0770660:intron | 30.0% | |
| !! | CTCCATTTTTATTTATTGCC+TGG | + | chr5_2:41822318-41822337 | Msa0770660:intron | 30.0% |
| GTCCAGGCAATAAATAAAAA+TGG | - | chr5_2:41822323-41822342 | None:intergenic | 30.0% | |
| !!! | TTGAGTTTCTTTTTTGCCAT+AGG | + | chr5_2:41822360-41822379 | Msa0770660:intron | 30.0% |
| AAAAACTAAGAAGGCTATAG+AGG | - | chr5_2:41822444-41822463 | None:intergenic | 30.0% | |
| ATTAGTGATGAGCATATTGT+AGG | + | chr5_2:41821615-41821634 | Msa0770660:intron | 30.0% | |
| TTATTGACATTGCATCTCAA+AGG | + | chr5_2:41821674-41821693 | Msa0770660:intron | 30.0% | |
| ATTGCATCTCAAAGGTTTAA+AGG | + | chr5_2:41821682-41821701 | Msa0770660:intron | 30.0% | |
| AATGTAGAAAAGGCAAACAA+AGG | - | chr5_2:41821782-41821801 | None:intergenic | 30.0% | |
| !! | CACAAACCCACTTTTAATAT+TGG | - | chr5_2:41824178-41824197 | None:intergenic | 30.0% |
| TGTTATCACATTTATGGTGA+TGG | + | chr5_2:41824203-41824222 | Msa0770660:CDS | 30.0% | |
| !! | ATTTATGGTGATGGATGATT+TGG | + | chr5_2:41824212-41824231 | Msa0770660:CDS | 30.0% |
| GTCATCAATGTCTTCATTCT+GGG | - | chr5_2:41821411-41821430 | None:intergenic | 35.0% | |
| !! | GCATAAAAAGTAGAAGTACC+GGG | - | chr5_2:41821536-41821555 | None:intergenic | 35.0% |
| ! | GGCATAAAAAGTAGAAGTAC+CGG | - | chr5_2:41821537-41821556 | None:intergenic | 35.0% |
| TTGGAAAATATAGAGCGTGA+GGG | + | chr5_2:41821572-41821591 | Msa0770660:intron | 35.0% | |
| TTTCGAAATATGCATCAAGG+AGG | - | chr5_2:41821947-41821966 | None:intergenic | 35.0% | |
| !! | ACTATGAAGAGTATCAATGC+AGG | - | chr5_2:41822023-41822042 | None:intergenic | 35.0% |
| AATCTTCAACAATGTCGACA+AGG | - | chr5_2:41822160-41822179 | None:intergenic | 35.0% | |
| CATTGTTGAAGATTTCTGAC+AGG | + | chr5_2:41822166-41822185 | Msa0770660:intron | 35.0% | |
| AATCTACTACATGAGTGACA+AGG | - | chr5_2:41822225-41822244 | None:intergenic | 35.0% | |
| TCATGTAGTAGATTCTTGAC+AGG | + | chr5_2:41822231-41822250 | Msa0770660:intron | 35.0% | |
| CATGTAGTAGATTCTTGACA+GGG | + | chr5_2:41822232-41822251 | Msa0770660:intron | 35.0% | |
| ! | CTTAACTTGAGTACAAGCAT+AGG | - | chr5_2:41822281-41822300 | None:intergenic | 35.0% |
| GTCTATGACTCAAACACAAA+AGG | - | chr5_2:41822513-41822532 | None:intergenic | 35.0% | |
| TTTCGAAATATGCATCAAGG+AGG | - | chr5_2:41821947-41821966 | None:intergenic | 35.0% | |
| !! | ACTATGAAGAGTATCAATGC+AGG | - | chr5_2:41822023-41822042 | None:intergenic | 35.0% |
| AATCTTCAACAATGTCGACA+AGG | - | chr5_2:41822160-41822179 | None:intergenic | 35.0% | |
| CATTGTTGAAGATTTCTGAC+AGG | + | chr5_2:41822166-41822185 | Msa0770660:intron | 35.0% | |
| AATCTACTACATGAGTGACA+AGG | - | chr5_2:41822225-41822244 | None:intergenic | 35.0% | |
| TCATGTAGTAGATTCTTGAC+AGG | + | chr5_2:41822231-41822250 | Msa0770660:intron | 35.0% | |
| CATGTAGTAGATTCTTGACA+GGG | + | chr5_2:41822232-41822251 | Msa0770660:intron | 35.0% | |
| ! | CTTAACTTGAGTACAAGCAT+AGG | - | chr5_2:41822281-41822300 | None:intergenic | 35.0% |
| GTCTATGACTCAAACACAAA+AGG | - | chr5_2:41822513-41822532 | None:intergenic | 35.0% | |
| TAGTGTTCGAGCAATAAGAA+TGG | - | chr5_2:41824103-41824122 | None:intergenic | 35.0% | |
| AACAGTGAAGTTCGTTATGT+CGG | + | chr5_2:41824125-41824144 | Msa0770660:intron | 35.0% | |
| AAGTTCGTTATGTCGGAAAA+AGG | + | chr5_2:41824132-41824151 | Msa0770660:intron | 35.0% | |
| ATGCTTGATATGGTTGACAT+GGG | - | chr5_2:41824246-41824265 | None:intergenic | 35.0% | |
| GATTGAAACCTTGCAAGAAA+AGG | + | chr5_2:41824296-41824315 | Msa0770660:CDS | 35.0% | |
| CAAGAAAAGGTTGTTGAGAT+GGG | + | chr5_2:41824309-41824328 | Msa0770660:CDS | 35.0% | |
| ! | ATAGGGTATCAAGTTGCTAA+AGG | + | chr5_2:41824458-41824477 | Msa0770660:intron | 35.0% |
| AACACTTGTCAATACCATCT+TGG | - | chr5_2:41824496-41824515 | None:intergenic | 35.0% | |
| ! | GTTGCATGTAATTCTGGTTG+AGG | - | chr5_2:41821316-41821335 | None:intergenic | 40.0% |
| ! | GGTTTGGTTGCATGTAATTC+TGG | - | chr5_2:41821322-41821341 | None:intergenic | 40.0% |
| CATGCAACCAAACCAAACTA+AGG | + | chr5_2:41821328-41821347 | Msa0770660:CDS | 40.0% | |
| ! | AGGACATCCTTAGTTTGGTT+TGG | - | chr5_2:41821338-41821357 | None:intergenic | 40.0% |
| TTAGCAGGACATCCTTAGTT+TGG | - | chr5_2:41821343-41821362 | None:intergenic | 40.0% | |
| CAATGTCTTCATTCTGGGTA+AGG | - | chr5_2:41821406-41821425 | None:intergenic | 40.0% | |
| CGTCATCAATGTCTTCATTC+TGG | - | chr5_2:41821412-41821431 | None:intergenic | 40.0% | |
| !! | GACATTGATGACGAAGTTGA+AGG | + | chr5_2:41821419-41821438 | Msa0770660:CDS | 40.0% |
| !!! | TCTACTTTTTATGCCCCAGT+AGG | + | chr5_2:41821542-41821561 | Msa0770660:intron | 40.0% |
| GTTGGAAAATATAGAGCGTG+AGG | + | chr5_2:41821571-41821590 | Msa0770660:intron | 40.0% | |
| AGTGATGAGCATATTGTAGG+AGG | + | chr5_2:41821618-41821637 | Msa0770660:intron | 40.0% | |
| GAGGAGACACATTAGTGATA+TGG | + | chr5_2:41821637-41821656 | Msa0770660:intron | 40.0% | |
| TGAGCAACTACGTACTACAT+TGG | - | chr5_2:41821974-41821993 | None:intergenic | 40.0% | |
| !! | ATGAAGAGTATCAATGCAGG+AGG | - | chr5_2:41822020-41822039 | None:intergenic | 40.0% |
| ACAAATATCATGGCAAGAGG+TGG | - | chr5_2:41822076-41822095 | None:intergenic | 40.0% | |
| TCTTGATGAAGACTTCTGCA+TGG | + | chr5_2:41822102-41822121 | Msa0770660:intron | 40.0% | |
| ATGCAACTAAGGAGGAAGAA+TGG | - | chr5_2:41822129-41822148 | None:intergenic | 40.0% | |
| AGATTCACATGCAACTAAGG+AGG | - | chr5_2:41822137-41822156 | None:intergenic | 40.0% | |
| AGGAGATTCACATGCAACTA+AGG | - | chr5_2:41822140-41822159 | None:intergenic | 40.0% | |
| GTACTCAAGTTAAGCATCAG+AGG | + | chr5_2:41822287-41822306 | Msa0770660:intron | 40.0% | |
| TTCAAATAGAGCACAAGTCC+AGG | - | chr5_2:41822339-41822358 | None:intergenic | 40.0% | |
| CATAGGTCTTCGACATTAGT+CGG | + | chr5_2:41822377-41822396 | Msa0770660:intron | 40.0% | |
| TAGTCGGACTTGAACTTTAG+AGG | + | chr5_2:41822393-41822412 | Msa0770660:intron | 40.0% | |
| ! | GGACTTGAACTTTAGAGGAT+CGG | + | chr5_2:41822398-41822417 | Msa0770660:intron | 40.0% |
| ! | GACTTGAACTTTAGAGGATC+GGG | + | chr5_2:41822399-41822418 | Msa0770660:intron | 40.0% |
| TTGGAAAATATAGCGCGTGA+GGG | + | chr5_2:41822645-41822664 | Msa0770660:intron | 40.0% | |
| AGTGATGAGCATATTGTAGG+AGG | + | chr5_2:41821618-41821637 | Msa0770660:intron | 40.0% | |
| GAGGAGACACATTAGTGATA+TGG | + | chr5_2:41821637-41821656 | Msa0770660:intron | 40.0% | |
| TGAGCAACTACGTACTACAT+TGG | - | chr5_2:41821974-41821993 | None:intergenic | 40.0% | |
| !! | ATGAAGAGTATCAATGCAGG+AGG | - | chr5_2:41822020-41822039 | None:intergenic | 40.0% |
| ACAAATATCATGGCAAGAGG+TGG | - | chr5_2:41822076-41822095 | None:intergenic | 40.0% | |
| TCTTGATGAAGACTTCTGCA+TGG | + | chr5_2:41822102-41822121 | Msa0770660:intron | 40.0% | |
| ATGCAACTAAGGAGGAAGAA+TGG | - | chr5_2:41822129-41822148 | None:intergenic | 40.0% | |
| AGATTCACATGCAACTAAGG+AGG | - | chr5_2:41822137-41822156 | None:intergenic | 40.0% | |
| AGGAGATTCACATGCAACTA+AGG | - | chr5_2:41822140-41822159 | None:intergenic | 40.0% | |
| GTACTCAAGTTAAGCATCAG+AGG | + | chr5_2:41822287-41822306 | Msa0770660:intron | 40.0% | |
| TTCAAATAGAGCACAAGTCC+AGG | - | chr5_2:41822339-41822358 | None:intergenic | 40.0% | |
| CATAGGTCTTCGACATTAGT+CGG | + | chr5_2:41822377-41822396 | Msa0770660:intron | 40.0% | |
| TAGTCGGACTTGAACTTTAG+AGG | + | chr5_2:41822393-41822412 | Msa0770660:intron | 40.0% | |
| ! | GGACTTGAACTTTAGAGGAT+CGG | + | chr5_2:41822398-41822417 | Msa0770660:intron | 40.0% |
| ! | GACTTGAACTTTAGAGGATC+GGG | + | chr5_2:41822399-41822418 | Msa0770660:intron | 40.0% |
| TTGGAAAATATAGCGCGTGA+GGG | + | chr5_2:41822645-41822664 | Msa0770660:intron | 40.0% | |
| AGTGATGAGCATATTGTAGG+AGG | + | chr5_2:41821618-41821637 | Msa0770660:intron | 40.0% | |
| GAGGAGACACATTAGTGATA+TGG | + | chr5_2:41821637-41821656 | Msa0770660:intron | 40.0% | |
| TCGTTATGTCGGAAAAAGGA+AGG | + | chr5_2:41824136-41824155 | Msa0770660:intron | 40.0% | |
| GATGCTTGATATGGTTGACA+TGG | - | chr5_2:41824247-41824266 | None:intergenic | 40.0% | |
| CAACAGTGTGATGCTTGATA+TGG | - | chr5_2:41824256-41824275 | None:intergenic | 40.0% | |
| ! | CTCAACAACCTTTTCTTGCA+AGG | - | chr5_2:41824307-41824326 | None:intergenic | 40.0% |
| GCAAGAAAAGGTTGTTGAGA+TGG | + | chr5_2:41824308-41824327 | Msa0770660:CDS | 40.0% | |
| AAAGGTTGTTGAGATGGGAA+TGG | + | chr5_2:41824314-41824333 | Msa0770660:CDS | 40.0% | |
| ! | GACAAGTGTTTTCCTCAAGA+AGG | + | chr5_2:41824506-41824525 | Msa0770660:CDS | 40.0% |
| TTTGAGCTCTTGGGTTTAGC+AGG | - | chr5_2:41821358-41821377 | None:intergenic | 45.0% | |
| !! | TGGAAGAGCTTTGAGCTCTT+GGG | - | chr5_2:41821367-41821386 | None:intergenic | 45.0% |
| AGCTCTTCCACTGAAATCTC+AGG | + | chr5_2:41821377-41821396 | Msa0770660:CDS | 45.0% | |
| AAGGAAGCCTGAGATTTCAG+TGG | - | chr5_2:41821387-41821406 | None:intergenic | 45.0% | |
| TTTCCAACACTACGCCTACT+GGG | - | chr5_2:41821559-41821578 | None:intergenic | 45.0% | |
| ! | TTTTCCAACACTACGCCTAC+TGG | - | chr5_2:41821560-41821579 | None:intergenic | 45.0% |
| AGTTAAGCATCAGAGGTCAC+AGG | + | chr5_2:41822294-41822313 | Msa0770660:intron | 45.0% | |
| CGACTAATGTCGAAGACCTA+TGG | - | chr5_2:41822379-41822398 | None:intergenic | 45.0% | |
| AGAAGGCTATAGAGGAGTTC+AGG | - | chr5_2:41822436-41822455 | None:intergenic | 45.0% | |
| TCAAACAGAGTAGAGCCTTG+TGG | + | chr5_2:41822476-41822495 | Msa0770660:intron | 45.0% | |
| ! | AAGGAGTACATGTAGCCACA+AGG | - | chr5_2:41822494-41822513 | None:intergenic | 45.0% |
| ! | CGCGCTATATTTTCCAACAG+TGG | - | chr5_2:41822642-41822661 | None:intergenic | 45.0% |
| GTTGGAAAATATAGCGCGTG+AGG | + | chr5_2:41822644-41822663 | Msa0770660:intron | 45.0% | |
| AGTTAAGCATCAGAGGTCAC+AGG | + | chr5_2:41822294-41822313 | Msa0770660:intron | 45.0% | |
| CGACTAATGTCGAAGACCTA+TGG | - | chr5_2:41822379-41822398 | None:intergenic | 45.0% | |
| AGAAGGCTATAGAGGAGTTC+AGG | - | chr5_2:41822436-41822455 | None:intergenic | 45.0% | |
| TCAAACAGAGTAGAGCCTTG+TGG | + | chr5_2:41822476-41822495 | Msa0770660:intron | 45.0% | |
| ! | AAGGAGTACATGTAGCCACA+AGG | - | chr5_2:41822494-41822513 | None:intergenic | 45.0% |
| ! | CGCGCTATATTTTCCAACAG+TGG | - | chr5_2:41822642-41822661 | None:intergenic | 45.0% |
| GTTGGAAAATATAGCGCGTG+AGG | + | chr5_2:41822644-41822663 | Msa0770660:intron | 45.0% | |
| TGTTGAGATGGGAATGGATG+AGG | + | chr5_2:41824320-41824339 | Msa0770660:CDS | 45.0% | |
| !! | GTGGAAGAGCTTTGAGCTCT+TGG | - | chr5_2:41821368-41821387 | None:intergenic | 50.0% |
| TTCCAACACTACGCCTACTG+GGG | - | chr5_2:41821558-41821577 | None:intergenic | 50.0% | |
| ! | CTTTAGAGGATCGGGCTGTT+AGG | + | chr5_2:41822407-41822426 | Msa0770660:intron | 50.0% |
| AGTGGTATCAGAGCTGCGTT+CGG | - | chr5_2:41822624-41822643 | None:intergenic | 50.0% | |
| ! | CTTTAGAGGATCGGGCTGTT+AGG | + | chr5_2:41822407-41822426 | Msa0770660:intron | 50.0% |
| GCTGCGTTCGGTCATTAACA+GGG | - | chr5_2:41823685-41823704 | None:intergenic | 50.0% | |
| AGCTGCGTTCGGTCATTAAC+AGG | - | chr5_2:41823686-41823705 | None:intergenic | 50.0% | |
| AGTGGTATCAGAGCTGCGTT+CGG | - | chr5_2:41822624-41822643 | None:intergenic | 50.0% | |
| GGCTTCTCTGCAATCCAAGA+TGG | + | chr5_2:41824479-41824498 | Msa0770660:CDS | 50.0% | |
| GTGCATGTGTGTGTGTCTCC+CGG | + | chr5_2:41821515-41821534 | Msa0770660:intron | 55.0% | |
| ATAGAGCGTGAGGGAGCTAG+TGG | + | chr5_2:41821581-41821600 | Msa0770660:intron | 55.0% | |
| GCTGCGTTCGGTCATTGACA+GGG | - | chr5_2:41822612-41822631 | None:intergenic | 55.0% | |
| AGCTGCGTTCGGTCATTGAC+AGG | - | chr5_2:41822613-41822632 | None:intergenic | 55.0% | |
| ! | CGCAGCTCTGATACCACTGT+TGG | + | chr5_2:41822626-41822645 | Msa0770660:intron | 55.0% |
| ! | CGCAGCTCTGATACCACTGT+TGG | + | chr5_2:41822626-41822645 | Msa0770660:intron | 55.0% |
| TGCCCCAGTAGGCGTAGTGT+TGG | + | chr5_2:41821553-41821572 | Msa0770660:intron | 60.0% | |
| AGCGTGAGGGAGCTAGTGGT+AGG | + | chr5_2:41821585-41821604 | Msa0770660:intron | 60.0% | |
| GCGTGAGGGAGCTAGTGGTA+GGG | + | chr5_2:41821586-41821605 | Msa0770660:intron | 60.0% | |
| ATAGCGCGTGAGGGAGCTAG+TGG | + | chr5_2:41822654-41822673 | Msa0770660:intron | 60.0% | |
| GCGTGAGGGAGCTAGTGGTA+GGG | + | chr5_2:41821586-41821605 | Msa0770660:intron | 60.0% | |
| ATAGCGCGTGAGGGAGCTAG+TGG | + | chr5_2:41822654-41822673 | Msa0770660:intron | 60.0% | |
| GCGTGAGGGAGCTAGTGGTA+GGG | + | chr5_2:41821586-41821605 | Msa0770660:intron | 60.0% | |
| CGCGTGAGGGAGCTAGTGGT+AGG | + | chr5_2:41822658-41822677 | Msa0770660:intron | 65.0% | |
| CGCGTGAGGGAGCTAGTGGT+AGG | + | chr5_2:41822658-41822677 | Msa0770660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 41821272 | 41824536 | 41821272 | ID=Msa0770660;Name=Msa0770660 |
| chr5_2 | mRNA | 41821272 | 41824536 | 41821272 | ID=Msa0770660-mRNA-1;Parent=Msa0770660;Name=Msa0770660-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|0.5|0.33|3|0|163 |
| chr5_2 | exon | 41821272 | 41821514 | 41821272 | ID=Msa0770660-mRNA-1:exon:13144;Parent=Msa0770660-mRNA-1 |
| chr5_2 | exon | 41824168 | 41824341 | 41824168 | ID=Msa0770660-mRNA-1:exon:13145;Parent=Msa0770660-mRNA-1 |
| chr5_2 | exon | 41824462 | 41824536 | 41824462 | ID=Msa0770660-mRNA-1:exon:13146;Parent=Msa0770660-mRNA-1 |
| chr5_2 | CDS | 41821272 | 41821514 | 41821272 | ID=Msa0770660-mRNA-1:cds;Parent=Msa0770660-mRNA-1 |
| chr5_2 | CDS | 41824168 | 41824341 | 41824168 | ID=Msa0770660-mRNA-1:cds;Parent=Msa0770660-mRNA-1 |
| chr5_2 | CDS | 41824462 | 41824536 | 41824462 | ID=Msa0770660-mRNA-1:cds;Parent=Msa0770660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
