Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772600 | sp|Q922M5|CDA7L_MOUSE | 55.446 | 101 | 43 | 1 | 155 | 253 | 331 | 431 | 6.90e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772600 | G7K9F5 | 93.541 | 418 | 23 | 3 | 1 | 416 | 1 | 416 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0772600 | Msa1305780 | 0.816372 | 5.720455e-52 | -8.615850e-47 |
| Msa0772600 | Msa1442260 | 0.803886 | 2.814267e-49 | -8.615850e-47 |
| Msa0127680 | Msa0772600 | 0.818890 | 1.547460e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772600 | MtrunA17_Chr5g0402961 | 93.541 | 418 | 23 | 3 | 1 | 416 | 1 | 416 | 0.0 | 766 |
| Msa0772600 | MtrunA17_Chr5g0402951 | 82.254 | 417 | 41 | 3 | 1 | 416 | 1 | 385 | 0.0 | 682 |
| Msa0772600 | MtrunA17_Chr4g0045521 | 51.250 | 240 | 101 | 4 | 29 | 260 | 47 | 278 | 8.56e-75 | 236 |
| Msa0772600 | MtrunA17_Chr6g0457221 | 45.614 | 114 | 49 | 2 | 148 | 253 | 29 | 137 | 2.26e-23 | 102 |
| Msa0772600 | MtrunA17_Chr5g0402931 | 65.094 | 106 | 28 | 3 | 1 | 102 | 1 | 101 | 3.09e-23 | 95.9 |
| Msa0772600 | MtrunA17_Chr6g0457161 | 44.643 | 112 | 53 | 2 | 148 | 253 | 38 | 146 | 8.47e-22 | 97.8 |
| Msa0772600 | MtrunA17_Chr6g0479091 | 28.328 | 293 | 135 | 11 | 29 | 255 | 9 | 292 | 1.63e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772600 | AT2G23530.1 | 50.140 | 357 | 134 | 10 | 27 | 375 | 27 | 347 | 2.31e-102 | 315 |
| Msa0772600 | AT4G37110.1 | 43.142 | 452 | 181 | 14 | 1 | 414 | 1 | 414 | 4.18e-100 | 305 |
| Msa0772600 | AT4G37110.2 | 44.218 | 441 | 179 | 14 | 1 | 414 | 1 | 401 | 2.60e-97 | 297 |
| Msa0772600 | AT4G37110.3 | 45.665 | 346 | 128 | 12 | 91 | 414 | 12 | 319 | 4.05e-84 | 260 |
| Msa0772600 | AT4G37110.4 | 45.665 | 346 | 128 | 12 | 91 | 414 | 12 | 319 | 4.05e-84 | 260 |
| Msa0772600 | AT1G67270.1 | 49.541 | 109 | 52 | 1 | 148 | 253 | 10 | 118 | 3.31e-24 | 104 |
| Msa0772600 | AT1G67780.2 | 47.368 | 114 | 47 | 2 | 148 | 253 | 18 | 126 | 1.60e-23 | 102 |
| Msa0772600 | AT1G67780.1 | 47.368 | 114 | 47 | 2 | 148 | 253 | 18 | 126 | 1.60e-23 | 102 |
| Msa0772600 | AT5G38690.2 | 41.071 | 112 | 56 | 3 | 155 | 260 | 22 | 129 | 6.17e-18 | 86.3 |
| Msa0772600 | AT5G38690.1 | 41.071 | 112 | 56 | 3 | 155 | 260 | 22 | 129 | 6.17e-18 | 86.3 |
Find 96 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAAGAAATTGGGGATTT+AGG | 0.095689 | 5_2:+46932689 | None:intergenic |
| TCGCGAAAGAATGGGGAAAT+TGG | 0.199640 | 5_2:-46932783 | Msa0772600:CDS |
| CAACATATGTATCTGAAATT+AGG | 0.209187 | 5_2:+46929379 | None:intergenic |
| CCAATTTCTTTCAACCCTTC+TGG | 0.226734 | 5_2:-46932680 | Msa0772600:CDS |
| TCAACATTTGTATCTAAAAC+TGG | 0.233020 | 5_2:+46929288 | None:intergenic |
| TGAAAGAAATTGGGGATTTA+GGG | 0.249164 | 5_2:+46932690 | None:intergenic |
| CCAGAAGGGTTGAAAGAAAT+TGG | 0.254529 | 5_2:+46932680 | None:intergenic |
| CCAGCCCAGTTTCAGTTAAA+AGG | 0.261180 | 5_2:-46929248 | Msa0772600:CDS |
| TGAAGAACATGATAAGCTTT+TGG | 0.280324 | 5_2:-46932401 | Msa0772600:CDS |
| TGTTGATCCTACTATTACTA+TGG | 0.308316 | 5_2:+46928886 | None:intergenic |
| GCCCATCTCGTCGATCTTCC+AGG | 0.312232 | 5_2:-46932658 | Msa0772600:intron |
| TCAAGCTTATCTTGCTCATC+AGG | 0.313503 | 5_2:+46929108 | None:intergenic |
| GGGGATTTAGGGTTGTTAGA+AGG | 0.359796 | 5_2:+46932701 | None:intergenic |
| GTTCCCATCCTTTAGCATTA+CGG | 0.364195 | 5_2:+46929643 | None:intergenic |
| GTGGATGGTGTTGGGAAAGA+TGG | 0.367711 | 5_2:-46932349 | Msa0772600:CDS |
| CCGTGAAAATCGCGAAAGAA+TGG | 0.382386 | 5_2:-46932792 | Msa0772600:CDS |
| CTGTATCTGAGCGCCGAGTT+TGG | 0.386680 | 5_2:+46929472 | None:intergenic |
| CGTGAAAATCGCGAAAGAAT+GGG | 0.387586 | 5_2:-46932791 | Msa0772600:CDS |
| CAACATCTGTGTCTGAATCT+AGG | 0.391316 | 5_2:+46929424 | None:intergenic |
| CGGATTTATGACTCTGTTCA+AGG | 0.406936 | 5_2:-46932322 | Msa0772600:CDS |
| CGCGAAAGAATGGGGAAATT+GGG | 0.412310 | 5_2:-46932782 | Msa0772600:CDS |
| GGGATTTAGGGTTGTTAGAA+GGG | 0.416786 | 5_2:+46932702 | None:intergenic |
| TGGGGAATACTGAGAAAACT+TGG | 0.421372 | 5_2:-46932381 | Msa0772600:CDS |
| GTTCTGCGTGAAGGTGGGTT+AGG | 0.421470 | 5_2:+46932725 | None:intergenic |
| CCAACACCAGACAGTATTGC+TGG | 0.429089 | 5_2:-46929036 | Msa0772600:CDS |
| TGGGTTAGGTTTGAGCTTGA+GGG | 0.431085 | 5_2:+46932739 | None:intergenic |
| CAGAAGGGTTGAAAGAAATT+GGG | 0.433617 | 5_2:+46932681 | None:intergenic |
| TTGCGAATGCAACATGGTCC+AGG | 0.434442 | 5_2:-46930210 | Msa0772600:CDS |
| AATACTGTCTGGTGTTGGTT+TGG | 0.439359 | 5_2:+46929041 | None:intergenic |
| GTGGGTTAGGTTTGAGCTTG+AGG | 0.448084 | 5_2:+46932738 | None:intergenic |
| TGGATGGTGTTGGGAAAGAT+GGG | 0.463944 | 5_2:-46932348 | Msa0772600:CDS |
| GGCACTTCAGAGTAACTAAT+CGG | 0.465626 | 5_2:+46932496 | None:intergenic |
| TTGCTGGAAGACTTAGGTCT+AGG | 0.467736 | 5_2:-46929020 | Msa0772600:CDS |
| TGTTCTTCAGTGTAAATCTC+AGG | 0.477463 | 5_2:+46932415 | None:intergenic |
| GCTAAAGGATGGGAACCTAC+TGG | 0.479648 | 5_2:-46929636 | Msa0772600:CDS |
| ATTTGTATCTAAAACTGGGT+TGG | 0.483181 | 5_2:+46929293 | None:intergenic |
| CCAGCAATACTGTCTGGTGT+TGG | 0.483622 | 5_2:+46929036 | None:intergenic |
| CAACATCCGTATCTGAAACT+AGG | 0.495759 | 5_2:+46929334 | None:intergenic |
| AAGCTGAAGCTGAAACTGAC+GGG | 0.496313 | 5_2:-46929164 | Msa0772600:CDS |
| CAAGGTGGGCATTTCCAAGT+TGG | 0.503431 | 5_2:+46929693 | None:intergenic |
| AAGCCTTGGCGGATCCAACT+TGG | 0.504074 | 5_2:-46929707 | Msa0772600:CDS |
| GAAGGGGTTCTGCGTGAAGG+TGG | 0.510113 | 5_2:+46932719 | None:intergenic |
| GAGGTCAATGAGAATAAGCT+TGG | 0.513982 | 5_2:-46929207 | Msa0772600:CDS |
| ATGTTCTCTTAACATACCTC+GGG | 0.516297 | 5_2:+46928959 | None:intergenic |
| TGCTGGAAGACTTAGGTCTA+GGG | 0.516944 | 5_2:-46929019 | Msa0772600:CDS |
| GTGTTGGGAAAGATGGGAAA+CGG | 0.518124 | 5_2:-46932342 | Msa0772600:CDS |
| CAACATTTGTATCTAAAACT+GGG | 0.518774 | 5_2:+46929289 | None:intergenic |
| AATGTTCTCTTAACATACCT+CGG | 0.521956 | 5_2:+46928958 | None:intergenic |
| TACTGGGAATCTGTATAGAA+AGG | 0.527453 | 5_2:-46929619 | Msa0772600:intron |
| CTAAAGGATGGGAACCTACT+GGG | 0.528099 | 5_2:-46929635 | Msa0772600:CDS |
| AGTCTTCCAGCAATACTGTC+TGG | 0.528922 | 5_2:+46929030 | None:intergenic |
| GTGAAAATCGCGAAAGAATG+GGG | 0.531556 | 5_2:-46932790 | Msa0772600:CDS |
| ACAGTATTGCTGGAAGACTT+AGG | 0.532920 | 5_2:-46929026 | Msa0772600:CDS |
| CTCGGCGCTCAGATACAGTT+GGG | 0.534706 | 5_2:-46929467 | Msa0772600:CDS |
| ACCTGGAAGATCGACGAGAT+GGG | 0.536623 | 5_2:+46932657 | None:intergenic |
| AACCTGGAAGATCGACGAGA+TGG | 0.536939 | 5_2:+46932656 | None:intergenic |
| ATCCGTATCTGAAACTAGGT+TGG | 0.537257 | 5_2:+46929338 | None:intergenic |
| AGCTGAAACTGACGGGGACA+AGG | 0.540499 | 5_2:-46929157 | Msa0772600:CDS |
| TATGCCGTAATGCTAAAGGA+TGG | 0.542243 | 5_2:-46929647 | Msa0772600:CDS |
| CAAGCTTATCTTGCTCATCA+GGG | 0.543400 | 5_2:+46929109 | None:intergenic |
| TACTCTGAAGTGCCAGTGAA+GGG | 0.546430 | 5_2:-46932487 | Msa0772600:CDS |
| GGAGCATGTACTAGAAGCCT+TGG | 0.546580 | 5_2:-46929721 | Msa0772600:CDS |
| AATAGGATTGTGATAAGAGA+AGG | 0.547208 | 5_2:-46932445 | Msa0772600:CDS |
| ATATGTATCTGAAATTAGGT+TGG | 0.553621 | 5_2:+46929383 | None:intergenic |
| GATCGACGAGATGGGCCAGA+AGG | 0.554005 | 5_2:+46932665 | None:intergenic |
| TGCGAATGCAACATGGTCCA+GGG | 0.555496 | 5_2:-46930209 | Msa0772600:CDS |
| TTCCAACCTAGTTTCAGATA+CGG | 0.556713 | 5_2:-46929340 | Msa0772600:CDS |
| GTGGAGATTGCTTGTACATG+AGG | 0.557303 | 5_2:-46930178 | Msa0772600:intron |
| GGATTTAGGGTTGTTAGAAG+GGG | 0.557686 | 5_2:+46932703 | None:intergenic |
| AGTATATGCCGTAATGCTAA+AGG | 0.558560 | 5_2:-46929651 | Msa0772600:CDS |
| AATCTCCACAAAACTGCCCC+TGG | 0.559632 | 5_2:+46930192 | None:intergenic |
| CTGAGCGCCGAGTTTGGATG+AGG | 0.560519 | 5_2:+46929478 | None:intergenic |
| TTACTCTGAAGTGCCAGTGA+AGG | 0.567736 | 5_2:-46932488 | Msa0772600:CDS |
| GCATGTACTAGAAGCCTTGG+CGG | 0.567780 | 5_2:-46929718 | Msa0772600:CDS |
| ACTCGGCGCTCAGATACAGT+TGG | 0.571662 | 5_2:-46929468 | Msa0772600:CDS |
| TCATTGACCTCATCAGAGAA+AGG | 0.572773 | 5_2:+46929219 | None:intergenic |
| TTAGAAGGGGTTCTGCGTGA+AGG | 0.581633 | 5_2:+46932716 | None:intergenic |
| ATGCCGTAATGCTAAAGGAT+GGG | 0.582849 | 5_2:-46929646 | Msa0772600:CDS |
| GGGGAATACTGAGAAAACTT+GGG | 0.582880 | 5_2:-46932380 | Msa0772600:CDS |
| GTCGCTACCTTTCTCTGATG+AGG | 0.583658 | 5_2:-46929226 | Msa0772600:CDS |
| AAGGGGTTCTGCGTGAAGGT+GGG | 0.585449 | 5_2:+46932720 | None:intergenic |
| TTTCTATACAGATTCCCAGT+AGG | 0.590385 | 5_2:+46929621 | None:intergenic |
| GAAGCTGAAGCTGAAACTGA+CGG | 0.592602 | 5_2:-46929165 | Msa0772600:CDS |
| TGCAAATTCCACGACAAGGT+GGG | 0.593077 | 5_2:+46929679 | None:intergenic |
| TTTCCAAGTTGGATCCGCCA+AGG | 0.596384 | 5_2:+46929704 | None:intergenic |
| ATCGACGAGATGGGCCAGAA+GGG | 0.596470 | 5_2:+46932666 | None:intergenic |
| TGGAAATGCCCACCTTGTCG+TGG | 0.605504 | 5_2:-46929687 | Msa0772600:CDS |
| AGAAGGGTTGAAAGAAATTG+GGG | 0.608045 | 5_2:+46932682 | None:intergenic |
| AGTTTCTTTAATTTAACCCG+AGG | 0.629644 | 5_2:-46928975 | Msa0772600:three_prime_UTR |
| GCTTCAGCTAGAGACTGCAT+TGG | 0.630820 | 5_2:+46929183 | None:intergenic |
| CACACTACCTCATCCAAACT+CGG | 0.631913 | 5_2:-46929485 | Msa0772600:CDS |
| TTGCAAATTCCACGACAAGG+TGG | 0.638867 | 5_2:+46929678 | None:intergenic |
| ACGCTGTTGCGAATGCAACA+TGG | 0.642007 | 5_2:-46930216 | Msa0772600:CDS |
| CAGTTGCAAATTCCACGACA+AGG | 0.659642 | 5_2:+46929675 | None:intergenic |
| GCGAATGCAACATGGTCCAG+GGG | 0.675677 | 5_2:-46930208 | Msa0772600:CDS |
| AGCTGAAGCTGAAACTGACG+GGG | 0.687480 | 5_2:-46929163 | Msa0772600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAACATTAAATTAAATAAA+TGG | + | chr5_2:46929491-46929510 | None:intergenic | 10.0% |
| !!! | TATGAAAGATTGAATTTTTA+GGG | + | chr5_2:46929094-46929113 | None:intergenic | 15.0% |
| !!! | ATATGAAAGATTGAATTTTT+AGG | + | chr5_2:46929095-46929114 | None:intergenic | 15.0% |
| !! | AATCAAACAAAAAAAATGTT+GGG | + | chr5_2:46929130-46929149 | None:intergenic | 15.0% |
| !! | AAATCAAACAAAAAAAATGT+TGG | + | chr5_2:46929131-46929150 | None:intergenic | 15.0% |
| !! | AAATCAACCAAAAAAATAAT+GGG | + | chr5_2:46929171-46929190 | None:intergenic | 15.0% |
| !! | AAAATCAACCAAAAAAATAA+TGG | + | chr5_2:46929172-46929191 | None:intergenic | 15.0% |
| !! | ACTTTCTATATATGATTTAT+TGG | - | chr5_2:46929517-46929536 | Msa0772600:intron | 15.0% |
| !! | TGTATTGTATTTAGTTATTT+GGG | - | chr5_2:46929651-46929670 | Msa0772600:CDS | 15.0% |
| !!! | AATTTTTCTTTTAAACAATC+TGG | - | chr5_2:46930536-46930555 | Msa0772600:intron | 15.0% |
| !!! | ATTTTTCTTTTAAACAATCT+GGG | - | chr5_2:46930537-46930556 | Msa0772600:intron | 15.0% |
| !! | AAATTTATTTAGTCCAAAAA+TGG | + | chr5_2:46930692-46930711 | None:intergenic | 15.0% |
| !!! | TAAATTTTAGAAACATTCTT+TGG | - | chr5_2:46930705-46930724 | Msa0772600:intron | 15.0% |
| !!! | TAATGTTTTATTTTAACTTG+TGG | - | chr5_2:46931220-46931239 | Msa0772600:intron | 15.0% |
| !!! | TTATCTAACTTGATAATTTT+TGG | - | chr5_2:46932788-46932807 | Msa0772600:CDS | 15.0% |
| !!! | CAAAAAACCCATTATTTTTT+TGG | - | chr5_2:46929161-46929180 | Msa0772600:CDS | 20.0% |
| !!! | TTTTGGTTGATTTTGTTTTT+AGG | - | chr5_2:46929178-46929197 | Msa0772600:CDS | 20.0% |
| !! | TATATGAAATTGATCATCAA+TGG | - | chr5_2:46929462-46929481 | Msa0772600:CDS | 20.0% |
| !!! | AGCATTAATTTAATTTCTGT+TGG | - | chr5_2:46929585-46929604 | Msa0772600:intron | 20.0% |
| !! | CTGTATTGTATTTAGTTATT+TGG | - | chr5_2:46929650-46929669 | Msa0772600:CDS | 20.0% |
| !! | ACAAATTCTTGACAATAAAA+TGG | + | chr5_2:46930367-46930386 | None:intergenic | 20.0% |
| !! | TTTAAAAGAAAAATTGTTCC+AGG | + | chr5_2:46930531-46930550 | None:intergenic | 20.0% |
| !!! | AGAAATTTGTTTCATGTTAT+AGG | + | chr5_2:46930829-46930848 | None:intergenic | 20.0% |
| !! | ATGAAACAAATTTCTCTAAA+TGG | - | chr5_2:46930834-46930853 | Msa0772600:intron | 20.0% |
| !! | TTATTTGAGAATGAAAAGAA+AGG | + | chr5_2:46931295-46931314 | None:intergenic | 20.0% |
| !! | ATTAATTCATCACATAAATG+AGG | + | chr5_2:46931388-46931407 | None:intergenic | 20.0% |
| !!! | GATATTTTTATTGACAAATC+AGG | - | chr5_2:46931641-46931660 | Msa0772600:intron | 20.0% |
| !! | ATTATATGGTTCAAATCAAA+TGG | + | chr5_2:46931802-46931821 | None:intergenic | 20.0% |
| !! | TAAATTCTAATCTACACATA+TGG | + | chr5_2:46931910-46931929 | None:intergenic | 20.0% |
| !! | AGAATTTAATAATACCTTGT+TGG | - | chr5_2:46931922-46931941 | Msa0772600:intron | 20.0% |
| !!! | TAAAGAAACTATCATTTTCA+TGG | + | chr5_2:46932727-46932746 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTAGGGCAAAAA+TGG | + | chr5_2:46929085-46929104 | None:intergenic | 25.0% |
| ! | AAAAGCCTGAGAAAAATAAT+AGG | - | chr5_2:46929250-46929269 | Msa0772600:CDS | 25.0% |
| !!! | ACAATCCTATTATTTTTCTC+AGG | + | chr5_2:46929258-46929277 | None:intergenic | 25.0% |
| ! | TGACACACAATAAAAATAGA+TGG | + | chr5_2:46929625-46929644 | None:intergenic | 25.0% |
| !!! | TTAGTTATTTGGGTTTTTGT+TGG | - | chr5_2:46929661-46929680 | Msa0772600:CDS | 25.0% |
| !!! | TAGTTATTTGGGTTTTTGTT+GGG | - | chr5_2:46929662-46929681 | Msa0772600:CDS | 25.0% |
| ! | AAGGAGAATAAATTAGATAG+AGG | - | chr5_2:46929832-46929851 | Msa0772600:intron | 25.0% |
| ! | AAACTACAAGAGAAACTATT+AGG | - | chr5_2:46929891-46929910 | Msa0772600:intron | 25.0% |
| !! | AGATTTAGAGTTTAATCAGT+TGG | - | chr5_2:46929916-46929935 | Msa0772600:intron | 25.0% |
| !! | GATTTAGAGTTTAATCAGTT+GGG | - | chr5_2:46929917-46929936 | Msa0772600:intron | 25.0% |
| ! | TTCTATGATAAACCATATTC+TGG | + | chr5_2:46929943-46929962 | None:intergenic | 25.0% |
| ! | TGGTTTATCATAGAACATTA+TGG | - | chr5_2:46929948-46929967 | Msa0772600:intron | 25.0% |
| !!! | GTTTAAGTTGGAATTTTTAC+TGG | - | chr5_2:46930039-46930058 | Msa0772600:intron | 25.0% |
| !!! | GAATGATGTTCATTGTTTTA+TGG | - | chr5_2:46930082-46930101 | Msa0772600:intron | 25.0% |
| ! | GATAAGTGATAACTGTTATT+TGG | - | chr5_2:46930141-46930160 | Msa0772600:intron | 25.0% |
| !!! | AACTGTTATTTGGTTTTCTA+AGG | - | chr5_2:46930151-46930170 | Msa0772600:intron | 25.0% |
| !!! | TGGTCATCAAATATTTTTGT+TGG | - | chr5_2:46930594-46930613 | Msa0772600:intron | 25.0% |
| ! | TGGTAATAGAAAGTTATAGT+AGG | + | chr5_2:46930644-46930663 | None:intergenic | 25.0% |
| ! | TATTTAGTCCAAAAATGGAA+GGG | + | chr5_2:46930687-46930706 | None:intergenic | 25.0% |
| ! | TTATTTAGTCCAAAAATGGA+AGG | + | chr5_2:46930688-46930707 | None:intergenic | 25.0% |
| ! | GTACAATACACAAATATGTT+TGG | + | chr5_2:46930742-46930761 | None:intergenic | 25.0% |
| ! | ACATATTTGTGTATTGTACT+TGG | - | chr5_2:46930743-46930762 | Msa0772600:intron | 25.0% |
| !! | CTTTTTGTATGTAATACTAG+CGG | + | chr5_2:46930889-46930908 | None:intergenic | 25.0% |
| !!! | AATTGTTATCAGTTGGTAAA+AGG | + | chr5_2:46930923-46930942 | None:intergenic | 25.0% |
| ! | TTTACCAACTGATAACAATT+CGG | - | chr5_2:46930923-46930942 | Msa0772600:intron | 25.0% |
| !!! | TTTATTTTAACTTGTGGACT+TGG | - | chr5_2:46931226-46931245 | Msa0772600:intron | 25.0% |
| ! | AAGTTCATCAAGAAATTAGA+TGG | + | chr5_2:46931423-46931442 | None:intergenic | 25.0% |
| !! | TTTTGTAGACAAAAAACTCT+TGG | - | chr5_2:46931464-46931483 | Msa0772600:intron | 25.0% |
| ! | TTCAAGAAATCAAGAAAGAT+AGG | + | chr5_2:46931704-46931723 | None:intergenic | 25.0% |
| ! | TGAATCAGAAATACTGAAAA+TGG | - | chr5_2:46931870-46931889 | Msa0772600:intron | 25.0% |
| !!! | CTCAAATATCTCCTTATTTT+AGG | - | chr5_2:46932177-46932196 | Msa0772600:intron | 25.0% |
| !!! | TTATTTTAGGTATTGCAGTT+GGG | - | chr5_2:46932190-46932209 | Msa0772600:intron | 25.0% |
| !! | ATATGTATCTGAAATTAGGT+TGG | + | chr5_2:46932332-46932351 | None:intergenic | 25.0% |
| !! | CAACATATGTATCTGAAATT+AGG | + | chr5_2:46932336-46932355 | None:intergenic | 25.0% |
| !! | CAACATTTGTATCTAAAACT+GGG | + | chr5_2:46932426-46932445 | None:intergenic | 25.0% |
| !! | TCAACATTTGTATCTAAAAC+TGG | + | chr5_2:46932427-46932446 | None:intergenic | 25.0% |
| TGAAAGAAATTGGGGATTTA+GGG | + | chr5_2:46929025-46929044 | None:intergenic | 30.0% | |
| TTGAAAGAAATTGGGGATTT+AGG | + | chr5_2:46929026-46929045 | None:intergenic | 30.0% | |
| AATAGGATTGTGATAAGAGA+AGG | - | chr5_2:46929267-46929286 | Msa0772600:CDS | 30.0% | |
| ! | TGAAGAACATGATAAGCTTT+TGG | - | chr5_2:46929311-46929330 | Msa0772600:CDS | 30.0% |
| ! | GAAGAACATGATAAGCTTTT+GGG | - | chr5_2:46929312-46929331 | Msa0772600:CDS | 30.0% |
| ! | AAGAACATGATAAGCTTTTG+GGG | - | chr5_2:46929313-46929332 | Msa0772600:CDS | 30.0% |
| ACAATATTAGAGAGAGAGTT+GGG | - | chr5_2:46929726-46929745 | Msa0772600:CDS | 30.0% | |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | + | chr5_2:46929887-46929906 | None:intergenic | 30.0% |
| AAACAATGAACATCATTCCA+AGG | + | chr5_2:46930080-46930099 | None:intergenic | 30.0% | |
| CTAGTGATTCCAAAATAGAA+AGG | - | chr5_2:46930197-46930216 | Msa0772600:CDS | 30.0% | |
| ! | GTACACTATCCTTTCTATTT+TGG | + | chr5_2:46930209-46930228 | None:intergenic | 30.0% |
| AGCTAAATTAAACTCGAAGT+AGG | + | chr5_2:46930401-46930420 | None:intergenic | 30.0% | |
| TACCTTGATCAAGTTTATTC+AGG | + | chr5_2:46930443-46930462 | None:intergenic | 30.0% | |
| TGTACATAGGAATGAAAAGT+AGG | + | chr5_2:46930571-46930590 | None:intergenic | 30.0% | |
| ! | TACTTTTCATTCCTATGTAC+AGG | - | chr5_2:46930570-46930589 | Msa0772600:intron | 30.0% |
| ! | ACTTTTCATTCCTATGTACA+GGG | - | chr5_2:46930571-46930590 | Msa0772600:intron | 30.0% |
| CAAAAATGGAAGGGAAAAAT+GGG | + | chr5_2:46930678-46930697 | None:intergenic | 30.0% | |
| AGGATCATATTCATATTCTC+AGG | + | chr5_2:46930809-46930828 | None:intergenic | 30.0% | |
| TTACCAACTGATAACAATTC+GGG | - | chr5_2:46930924-46930943 | Msa0772600:intron | 30.0% | |
| !!! | TTTTTTTATGCCAGAGTGTT+CGG | - | chr5_2:46931140-46931159 | Msa0772600:intron | 30.0% |
| !! | AAAATGGACTATGTCAACTT+GGG | + | chr5_2:46931358-46931377 | None:intergenic | 30.0% |
| !! | AAAAATGGACTATGTCAACT+TGG | + | chr5_2:46931359-46931378 | None:intergenic | 30.0% |
| TAAATGAGGCATGGTAAAAA+TGG | + | chr5_2:46931374-46931393 | None:intergenic | 30.0% | |
| GACAAAAAACTCTTGGTTAT+CGG | - | chr5_2:46931471-46931490 | Msa0772600:intron | 30.0% | |
| TTACCATCATACATATGTTG+GGG | + | chr5_2:46931586-46931605 | None:intergenic | 30.0% | |
| CTTACCATCATACATATGTT+GGG | + | chr5_2:46931587-46931606 | None:intergenic | 30.0% | |
| AACCATATAATGCTCTCTTT+GGG | - | chr5_2:46931811-46931830 | Msa0772600:intron | 30.0% | |
| ! | TCATCATGCTTTTGTAGATA+CGG | - | chr5_2:46931968-46931987 | Msa0772600:intron | 30.0% |
| CAACTGCAATACCTAAAATA+AGG | + | chr5_2:46932191-46932210 | None:intergenic | 30.0% | |
| !!! | CTTATTTTAGGTATTGCAGT+TGG | - | chr5_2:46932189-46932208 | Msa0772600:intron | 30.0% |
| ! | ATTTGTATCTAAAACTGGGT+TGG | + | chr5_2:46932422-46932441 | None:intergenic | 30.0% |
| ! | AGTTTCTTTAATTTAACCCG+AGG | - | chr5_2:46932737-46932756 | Msa0772600:CDS | 30.0% |
| AATGTTCTCTTAACATACCT+CGG | + | chr5_2:46932757-46932776 | None:intergenic | 30.0% | |
| ! | TCTTTTGCCATAGTAATAGT+AGG | - | chr5_2:46932819-46932838 | Msa0772600:CDS | 30.0% |
| TGTTGATCCTACTATTACTA+TGG | + | chr5_2:46932829-46932848 | None:intergenic | 30.0% | |
| AGAAGGGTTGAAAGAAATTG+GGG | + | chr5_2:46929033-46929052 | None:intergenic | 35.0% | |
| CAGAAGGGTTGAAAGAAATT+GGG | + | chr5_2:46929034-46929053 | None:intergenic | 35.0% | |
| TGTTCTTCAGTGTAAATCTC+AGG | + | chr5_2:46929300-46929319 | None:intergenic | 35.0% | |
| !! | TATTTGGGTTTTTGTTGGGT+TGG | - | chr5_2:46929666-46929685 | Msa0772600:CDS | 35.0% |
| GACAATATTAGAGAGAGAGT+TGG | - | chr5_2:46929725-46929744 | Msa0772600:CDS | 35.0% | |
| CAATATTAGAGAGAGAGTTG+GGG | - | chr5_2:46929727-46929746 | Msa0772600:CDS | 35.0% | |
| !! | TGGAAAAGATGGTGGAAAAT+AGG | - | chr5_2:46929762-46929781 | Msa0772600:intron | 35.0% |
| ! | TTGGTAGTTGTTGTTGTTGA+TGG | - | chr5_2:46930016-46930035 | Msa0772600:intron | 35.0% |
| ! | TGGTAGTTGTTGTTGTTGAT+GGG | - | chr5_2:46930017-46930036 | Msa0772600:intron | 35.0% |
| !! | TGTTGTTGATGGGTTTAAGT+TGG | - | chr5_2:46930027-46930046 | Msa0772600:intron | 35.0% |
| ATAGTGAGTTGTACAGATTC+TGG | + | chr5_2:46930231-46930250 | None:intergenic | 35.0% | |
| TTGTGGATCGCAAAAAATAG+TGG | + | chr5_2:46930324-46930343 | None:intergenic | 35.0% | |
| GACCTGAATAAACTTGATCA+AGG | - | chr5_2:46930438-46930457 | Msa0772600:intron | 35.0% | |
| AATTCTGCTAACGTGACTTT+GGG | - | chr5_2:46930488-46930507 | Msa0772600:intron | 35.0% | |
| !! | GGATATAACATTTTCTAGCC+TGG | - | chr5_2:46930510-46930529 | Msa0772600:intron | 35.0% |
| CCAAAAATGGAAGGGAAAAA+TGG | + | chr5_2:46930679-46930698 | None:intergenic | 35.0% | |
| !! | CCATTTTTCCCTTCCATTTT+TGG | - | chr5_2:46930676-46930695 | Msa0772600:intron | 35.0% |
| GTACTTGGAAATAACATTGC+TGG | - | chr5_2:46930758-46930777 | Msa0772600:intron | 35.0% | |
| CTAAATGGAAGACTTCTTTC+TGG | - | chr5_2:46930849-46930868 | Msa0772600:intron | 35.0% | |
| ATTGAGACATGGGAACATAT+TGG | - | chr5_2:46930984-46931003 | Msa0772600:intron | 35.0% | |
| TTGAGACATGGGAACATATT+GGG | - | chr5_2:46930985-46931004 | Msa0772600:intron | 35.0% | |
| ACATAAATGAGGCAAGGTTA+TGG | + | chr5_2:46931325-46931344 | None:intergenic | 35.0% | |
| ATAACCTTGCCTCATTTATG+TGG | - | chr5_2:46931324-46931343 | Msa0772600:intron | 35.0% | |
| TTCATCACATAAATGAGGCA+TGG | + | chr5_2:46931383-46931402 | None:intergenic | 35.0% | |
| TACCATCATACATATGTTGG+GGG | + | chr5_2:46931585-46931604 | None:intergenic | 35.0% | |
| GCTTACCATCATACATATGT+TGG | + | chr5_2:46931588-46931607 | None:intergenic | 35.0% | |
| ! | ATGTTGATGCTCTAGTTTCT+AGG | - | chr5_2:46931667-46931686 | Msa0772600:intron | 35.0% |
| AAACAAGTTGTAGACCACTT+TGG | - | chr5_2:46931728-46931747 | Msa0772600:intron | 35.0% | |
| GAACCATATAATGCTCTCTT+TGG | - | chr5_2:46931810-46931829 | Msa0772600:intron | 35.0% | |
| !! | AACCCAAAGAGAGCATTATA+TGG | + | chr5_2:46931816-46931835 | None:intergenic | 35.0% |
| TCTTGGATATGTTTCAACTC+TGG | - | chr5_2:46931839-46931858 | Msa0772600:intron | 35.0% | |
| ! | CATCATGCTTTTGTAGATAC+GGG | - | chr5_2:46931969-46931988 | Msa0772600:intron | 35.0% |
| ! | ATCATGCTTTTGTAGATACG+GGG | - | chr5_2:46931970-46931989 | Msa0772600:intron | 35.0% |
| AGTATATGCCGTAATGCTAA+AGG | - | chr5_2:46932061-46932080 | Msa0772600:intron | 35.0% | |
| TTTCTATACAGATTCCCAGT+AGG | + | chr5_2:46932094-46932113 | None:intergenic | 35.0% | |
| TACTGGGAATCTGTATAGAA+AGG | - | chr5_2:46932093-46932112 | Msa0772600:intron | 35.0% | |
| TTCCAACCTAGTTTCAGATA+CGG | - | chr5_2:46932372-46932391 | Msa0772600:CDS | 35.0% | |
| GATAAGCTTGAAAAAAGCGA+AGG | - | chr5_2:46932616-46932635 | Msa0772600:intron | 35.0% | |
| ATGTTCTCTTAACATACCTC+GGG | + | chr5_2:46932756-46932775 | None:intergenic | 35.0% | |
| !! | GTTCGATTTCGTTTTTGCAG+AGG | + | chr5_2:46928813-46928832 | None:intergenic | 40.0% |
| ! | CCATTCTTTCGCGATTTTCA+CGG | + | chr5_2:46928923-46928942 | None:intergenic | 40.0% |
| CGTGAAAATCGCGAAAGAAT+GGG | - | chr5_2:46928921-46928940 | Msa0772600:three_prime_UTR | 40.0% | |
| GTGAAAATCGCGAAAGAATG+GGG | - | chr5_2:46928922-46928941 | Msa0772600:three_prime_UTR | 40.0% | |
| ! | GGATTTAGGGTTGTTAGAAG+GGG | + | chr5_2:46929012-46929031 | None:intergenic | 40.0% |
| ! | GGGATTTAGGGTTGTTAGAA+GGG | + | chr5_2:46929013-46929032 | None:intergenic | 40.0% |
| CCAGAAGGGTTGAAAGAAAT+TGG | + | chr5_2:46929035-46929054 | None:intergenic | 40.0% | |
| CCAATTTCTTTCAACCCTTC+TGG | - | chr5_2:46929032-46929051 | Msa0772600:CDS | 40.0% | |
| GGCACTTCAGAGTAACTAAT+CGG | + | chr5_2:46929219-46929238 | None:intergenic | 40.0% | |
| TGGGGAATACTGAGAAAACT+TGG | - | chr5_2:46929331-46929350 | Msa0772600:CDS | 40.0% | |
| GGGGAATACTGAGAAAACTT+GGG | - | chr5_2:46929332-46929351 | Msa0772600:CDS | 40.0% | |
| ! | GAAAACTTGGGAGCTTTTTG+TGG | - | chr5_2:46929344-46929363 | Msa0772600:CDS | 40.0% |
| ! | AGCTTTTTGTGGATGGTGTT+GGG | - | chr5_2:46929355-46929374 | Msa0772600:CDS | 40.0% |
| CGGATTTATGACTCTGTTCA+AGG | - | chr5_2:46929390-46929409 | Msa0772600:CDS | 40.0% | |
| ! | GTAACTTTTACCTGCACTGA+TGG | + | chr5_2:46929425-46929444 | None:intergenic | 40.0% |
| !!! | TTTTTGTTGGGTTGGATGTG+TGG | - | chr5_2:46929674-46929693 | Msa0772600:CDS | 40.0% |
| ! | AGCACCTATAGTGGAAAAGA+TGG | - | chr5_2:46929751-46929770 | Msa0772600:intron | 40.0% |
| ! | ACCTATAGTGGAAAAGATGG+TGG | - | chr5_2:46929754-46929773 | Msa0772600:intron | 40.0% |
| ! | TCCACCATCTTTTCCACTAT+AGG | + | chr5_2:46929758-46929777 | None:intergenic | 40.0% |
| !! | AGATGGTGGAAAATAGGCTT+AGG | - | chr5_2:46929768-46929787 | Msa0772600:intron | 40.0% |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr5_2:46929776-46929795 | Msa0772600:intron | 40.0% | |
| CTCCTTACTACAGAATCCTT+GGG | + | chr5_2:46929818-46929837 | None:intergenic | 40.0% | |
| TCTCCTTACTACAGAATCCT+TGG | + | chr5_2:46929819-46929838 | None:intergenic | 40.0% | |
| TAATCAGTTGGGCCAGAATA+TGG | - | chr5_2:46929928-46929947 | Msa0772600:intron | 40.0% | |
| ! | AAGCCTTATCCCACTTAAGT+GGG | + | chr5_2:46929998-46930017 | None:intergenic | 40.0% |
| GGTTCTTGACTCTTTAACCT+TGG | - | chr5_2:46930060-46930079 | Msa0772600:intron | 40.0% | |
| GAATTCTGCTAACGTGACTT+TGG | - | chr5_2:46930487-46930506 | Msa0772600:intron | 40.0% | |
| ATTCTGCTAACGTGACTTTG+GGG | - | chr5_2:46930489-46930508 | Msa0772600:intron | 40.0% | |
| TTTCATTCCTATGTACAGGG+TGG | - | chr5_2:46930574-46930593 | Msa0772600:intron | 40.0% | |
| !! | AAAAATGGGCTAGAATGAGG+TGG | + | chr5_2:46930664-46930683 | None:intergenic | 40.0% |
| GGAAATAACATTGCTGGTAG+TGG | - | chr5_2:46930764-46930783 | Msa0772600:intron | 40.0% | |
| TGTCTCAATGATCAAGTGGT+TGG | + | chr5_2:46930973-46930992 | None:intergenic | 40.0% | |
| ACCACTTGATCATTGAGACA+TGG | - | chr5_2:46930973-46930992 | Msa0772600:intron | 40.0% | |
| CCACTTGATCATTGAGACAT+GGG | - | chr5_2:46930974-46930993 | Msa0772600:intron | 40.0% | |
| AGTGACATTGACACATGTTG+AGG | - | chr5_2:46931029-46931048 | Msa0772600:intron | 40.0% | |
| ATTGACACATGTTGAGGTGT+GGG | - | chr5_2:46931035-46931054 | Msa0772600:intron | 40.0% | |
| AGATGTGGTAGTTATGCTAG+AGG | - | chr5_2:46931058-46931077 | Msa0772600:intron | 40.0% | |
| !!! | AGAGGAGGGGATTTTTTACA+AGG | - | chr5_2:46931076-46931095 | Msa0772600:intron | 40.0% |
| TTACAAGGTGGTCACTATGA+AGG | - | chr5_2:46931091-46931110 | Msa0772600:intron | 40.0% | |
| ! | TAACTTGTGGACTTGGATTG+AGG | - | chr5_2:46931233-46931252 | Msa0772600:intron | 40.0% |
| GTTACTTGGCCACATAAATG+AGG | + | chr5_2:46931336-46931355 | None:intergenic | 40.0% | |
| CTATGTCAACTTGGGTTACT+TGG | + | chr5_2:46931350-46931369 | None:intergenic | 40.0% | |
| ACCATCATACATATGTTGGG+GGG | + | chr5_2:46931584-46931603 | None:intergenic | 40.0% | |
| ATCCAACCAAATCAAGCACA+AGG | + | chr5_2:46931624-46931643 | None:intergenic | 40.0% | |
| ! | TTGATGCTCTAGTTTCTAGG+TGG | - | chr5_2:46931670-46931689 | Msa0772600:intron | 40.0% |
| AAGTTGTAGACCACTTTGGT+TGG | - | chr5_2:46931732-46931751 | Msa0772600:intron | 40.0% | |
| TGAGACATATCCAACCAAAG+TGG | + | chr5_2:46931745-46931764 | None:intergenic | 40.0% | |
| ATACCTTGTTGGACCTGATA+CGG | - | chr5_2:46931933-46931952 | Msa0772600:intron | 40.0% | |
| TATGCCGTAATGCTAAAGGA+TGG | - | chr5_2:46932065-46932084 | Msa0772600:intron | 40.0% | |
| ATGCCGTAATGCTAAAGGAT+GGG | - | chr5_2:46932066-46932085 | Msa0772600:intron | 40.0% | |
| GTTCCCATCCTTTAGCATTA+CGG | + | chr5_2:46932072-46932091 | None:intergenic | 40.0% | |
| CAACATCTGTGTCTGAATCT+AGG | + | chr5_2:46932291-46932310 | None:intergenic | 40.0% | |
| ! | ATCCGTATCTGAAACTAGGT+TGG | + | chr5_2:46932377-46932396 | None:intergenic | 40.0% |
| ! | CAACATCCGTATCTGAAACT+AGG | + | chr5_2:46932381-46932400 | None:intergenic | 40.0% |
| !! | GCGACCTTTTAACTGAAACT+GGG | + | chr5_2:46932471-46932490 | None:intergenic | 40.0% |
| !! | AGCGACCTTTTAACTGAAAC+TGG | + | chr5_2:46932472-46932491 | None:intergenic | 40.0% |
| TCATTGACCTCATCAGAGAA+AGG | + | chr5_2:46932496-46932515 | None:intergenic | 40.0% | |
| GAGGTCAATGAGAATAAGCT+TGG | - | chr5_2:46932505-46932524 | Msa0772600:CDS | 40.0% | |
| CAAGCTTATCTTGCTCATCA+GGG | + | chr5_2:46932606-46932625 | None:intergenic | 40.0% | |
| TCAAGCTTATCTTGCTCATC+AGG | + | chr5_2:46932607-46932626 | None:intergenic | 40.0% | |
| !! | AATACTGTCTGGTGTTGGTT+TGG | + | chr5_2:46932674-46932693 | None:intergenic | 40.0% |
| ACAGTATTGCTGGAAGACTT+AGG | - | chr5_2:46932686-46932705 | Msa0772600:CDS | 40.0% | |
| !! | CGATTTCGTTTTTGCAGAGG+AGG | + | chr5_2:46928810-46928829 | None:intergenic | 45.0% |
| CCGTGAAAATCGCGAAAGAA+TGG | - | chr5_2:46928920-46928939 | Msa0772600:three_prime_UTR | 45.0% | |
| TCGCGAAAGAATGGGGAAAT+TGG | - | chr5_2:46928929-46928948 | Msa0772600:three_prime_UTR | 45.0% | |
| CGCGAAAGAATGGGGAAATT+GGG | - | chr5_2:46928930-46928949 | Msa0772600:three_prime_UTR | 45.0% | |
| ! | TGGGTTAGGTTTGAGCTTGA+GGG | + | chr5_2:46928976-46928995 | None:intergenic | 45.0% |
| ! | GGGGATTTAGGGTTGTTAGA+AGG | + | chr5_2:46929014-46929033 | None:intergenic | 45.0% |
| AGGGCAAAAATGGAAGAACC+TGG | + | chr5_2:46929075-46929094 | None:intergenic | 45.0% | |
| !! | TTACTCTGAAGTGCCAGTGA+AGG | - | chr5_2:46929224-46929243 | Msa0772600:CDS | 45.0% |
| !! | TACTCTGAAGTGCCAGTGAA+GGG | - | chr5_2:46929225-46929244 | Msa0772600:CDS | 45.0% |
| ! | ACTTGGGAGCTTTTTGTGGA+TGG | - | chr5_2:46929348-46929367 | Msa0772600:CDS | 45.0% |
| ! | GAGCTTTTTGTGGATGGTGT+TGG | - | chr5_2:46929354-46929373 | Msa0772600:CDS | 45.0% |
| ! | TGGATGGTGTTGGGAAAGAT+GGG | - | chr5_2:46929364-46929383 | Msa0772600:CDS | 45.0% |
| GTGTTGGGAAAGATGGGAAA+CGG | - | chr5_2:46929370-46929389 | Msa0772600:CDS | 45.0% | |
| GAAAAACTTGCCATCAGTGC+AGG | - | chr5_2:46929412-46929431 | Msa0772600:CDS | 45.0% | |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr5_2:46929771-46929790 | Msa0772600:intron | 45.0% | |
| ACATGTAGAGAGAAGACCCA+AGG | - | chr5_2:46929799-46929818 | Msa0772600:intron | 45.0% | |
| GACCCAAGGATTCTGTAGTA+AGG | - | chr5_2:46929813-46929832 | Msa0772600:intron | 45.0% | |
| GAGGATAGTCACACTACTAG+AGG | - | chr5_2:46929851-46929870 | Msa0772600:intron | 45.0% | |
| AGTCACACTACTAGAGGAAG+AGG | - | chr5_2:46929857-46929876 | Msa0772600:intron | 45.0% | |
| ! | CTTAAGTGGGTTCAGCTACA+TGG | + | chr5_2:46929985-46930004 | None:intergenic | 45.0% |
| TGTAGCTGAACCCACTTAAG+TGG | - | chr5_2:46929985-46930004 | Msa0772600:intron | 45.0% | |
| GTAGCTGAACCCACTTAAGT+GGG | - | chr5_2:46929986-46930005 | Msa0772600:intron | 45.0% | |
| GAACCCACTTAAGTGGGATA+AGG | - | chr5_2:46929992-46930011 | Msa0772600:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTTAAG+TGG | + | chr5_2:46929999-46930018 | None:intergenic | 45.0% |
| CACTTAAGTGGGATAAGGCT+TGG | - | chr5_2:46929997-46930016 | Msa0772600:intron | 45.0% | |
| GGATTCTTGTGCAGTACATC+TGG | - | chr5_2:46930172-46930191 | Msa0772600:intron | 45.0% | |
| CGATCCACAATTGACAACAC+TGG | - | chr5_2:46930334-46930353 | Msa0772600:intron | 45.0% | |
| TCCACAATTGACAACACTGG+TGG | - | chr5_2:46930337-46930356 | Msa0772600:intron | 45.0% | |
| ACCACCAGTGTTGTCAATTG+TGG | + | chr5_2:46930341-46930360 | None:intergenic | 45.0% | |
| ! | TTGATGACCACCCTGTACAT+AGG | + | chr5_2:46930584-46930603 | None:intergenic | 45.0% |
| !! | GGGAAAAATGGGCTAGAATG+AGG | + | chr5_2:46930667-46930686 | None:intergenic | 45.0% |
| CCACCCGAATTGTTATCAGT+TGG | + | chr5_2:46930930-46930949 | None:intergenic | 45.0% | |
| CCAACTGATAACAATTCGGG+TGG | - | chr5_2:46930927-46930946 | Msa0772600:intron | 45.0% | |
| CCCATGTCTCAATGATCAAG+TGG | + | chr5_2:46930977-46930996 | None:intergenic | 45.0% | |
| CATTGACACATGTTGAGGTG+TGG | - | chr5_2:46931034-46931053 | Msa0772600:intron | 45.0% | |
| TGTGGTAGTTATGCTAGAGG+AGG | - | chr5_2:46931061-46931080 | Msa0772600:intron | 45.0% | |
| GTGGTAGTTATGCTAGAGGA+GGG | - | chr5_2:46931062-46931081 | Msa0772600:intron | 45.0% | |
| TGGTAGTTATGCTAGAGGAG+GGG | - | chr5_2:46931063-46931082 | Msa0772600:intron | 45.0% | |
| !!! | GGAGGGGATTTTTTACAAGG+TGG | - | chr5_2:46931079-46931098 | Msa0772600:intron | 45.0% |
| GGTCACTATGAAGGCTATAC+TGG | - | chr5_2:46931100-46931119 | Msa0772600:intron | 45.0% | |
| ! | AGTGTTCGGCTTTTTGACCT+GGG | - | chr5_2:46931154-46931173 | Msa0772600:intron | 45.0% |
| !! | CTCATCAGCTCTAAGAGTTC+AGG | + | chr5_2:46931181-46931200 | None:intergenic | 45.0% |
| TTGGCCACATAAATGAGGCA+AGG | + | chr5_2:46931331-46931350 | None:intergenic | 45.0% | |
| GTGGAGATTGCTTGTACATG+AGG | - | chr5_2:46931534-46931553 | Msa0772600:intron | 45.0% | |
| ATCATACATATGTTGGGGGG+GGG | + | chr5_2:46931581-46931600 | None:intergenic | 45.0% | |
| CATCATACATATGTTGGGGG+GGG | + | chr5_2:46931582-46931601 | None:intergenic | 45.0% | |
| CCATCATACATATGTTGGGG+GGG | + | chr5_2:46931583-46931602 | None:intergenic | 45.0% | |
| GAGTCTCCTTGTGCTTGATT+TGG | - | chr5_2:46931615-46931634 | Msa0772600:intron | 45.0% | |
| !! | CTCCTTGTGCTTGATTTGGT+TGG | - | chr5_2:46931619-46931638 | Msa0772600:intron | 45.0% |
| TTCAATTGCACTTGCACACG+AGG | - | chr5_2:46931766-46931785 | Msa0772600:intron | 45.0% | |
| ! | GCTCTCTTTGGGTTCTTTCT+TGG | - | chr5_2:46931822-46931841 | Msa0772600:intron | 45.0% |
| AGAAAACAATGCGCCGTATC+AGG | + | chr5_2:46931949-46931968 | None:intergenic | 45.0% | |
| TGCAAATTCCACGACAAGGT+GGG | + | chr5_2:46932036-46932055 | None:intergenic | 45.0% | |
| TTGCAAATTCCACGACAAGG+TGG | + | chr5_2:46932037-46932056 | None:intergenic | 45.0% | |
| CAGTTGCAAATTCCACGACA+AGG | + | chr5_2:46932040-46932059 | None:intergenic | 45.0% | |
| CTAAAGGATGGGAACCTACT+GGG | - | chr5_2:46932077-46932096 | Msa0772600:intron | 45.0% | |
| CACACTACCTCATCCAAACT+CGG | - | chr5_2:46932227-46932246 | Msa0772600:intron | 45.0% | |
| !! | CCTTTTAACTGAAACTGGGC+TGG | + | chr5_2:46932467-46932486 | None:intergenic | 45.0% |
| CCAGCCCAGTTTCAGTTAAA+AGG | - | chr5_2:46932464-46932483 | Msa0772600:CDS | 45.0% | |
| GAAGCTGAAGCTGAAACTGA+CGG | - | chr5_2:46932547-46932566 | Msa0772600:intron | 45.0% | |
| AAGCTGAAGCTGAAACTGAC+GGG | - | chr5_2:46932548-46932567 | Msa0772600:intron | 45.0% | |
| AGTCTTCCAGCAATACTGTC+TGG | + | chr5_2:46932685-46932704 | None:intergenic | 45.0% | |
| TTGCTGGAAGACTTAGGTCT+AGG | - | chr5_2:46932692-46932711 | Msa0772600:CDS | 45.0% | |
| TGCTGGAAGACTTAGGTCTA+GGG | - | chr5_2:46932693-46932712 | Msa0772600:CDS | 45.0% | |
| !! | GTGGGTTAGGTTTGAGCTTG+AGG | + | chr5_2:46928977-46928996 | None:intergenic | 50.0% |
| TTAGAAGGGGTTCTGCGTGA+AGG | + | chr5_2:46928999-46929018 | None:intergenic | 50.0% | |
| ACCTGGAAGATCGACGAGAT+GGG | + | chr5_2:46929058-46929077 | None:intergenic | 50.0% | |
| AACCTGGAAGATCGACGAGA+TGG | + | chr5_2:46929059-46929078 | None:intergenic | 50.0% | |
| ! | TCAGGCTTTTCTCCCTTCAC+TGG | + | chr5_2:46929240-46929259 | None:intergenic | 50.0% |
| ! | GTGGATGGTGTTGGGAAAGA+TGG | - | chr5_2:46929363-46929382 | Msa0772600:CDS | 50.0% |
| AGTTGGGGTAGCACCTATAG+TGG | - | chr5_2:46929742-46929761 | Msa0772600:intron | 50.0% | |
| ATGTTGAGGTGTGGGAGATG+TGG | - | chr5_2:46931043-46931062 | Msa0772600:intron | 50.0% | |
| GGTCAAAAAGCCGAACACTC+TGG | + | chr5_2:46931153-46931172 | None:intergenic | 50.0% | |
| ! | GAGTGTTCGGCTTTTTGACC+TGG | - | chr5_2:46931153-46931172 | Msa0772600:intron | 50.0% |
| ACGCTGTTGCGAATGCAACA+TGG | - | chr5_2:46931496-46931515 | Msa0772600:intron | 50.0% | |
| TTGCGAATGCAACATGGTCC+AGG | - | chr5_2:46931502-46931521 | Msa0772600:intron | 50.0% | |
| TGCGAATGCAACATGGTCCA+GGG | - | chr5_2:46931503-46931522 | Msa0772600:intron | 50.0% | |
| AATCTCCACAAAACTGCCCC+TGG | + | chr5_2:46931523-46931542 | None:intergenic | 50.0% | |
| TCATACATATGTTGGGGGGG+GGG | + | chr5_2:46931580-46931599 | None:intergenic | 50.0% | |
| CCCCCCCAACATATGTATGA+TGG | - | chr5_2:46931580-46931599 | Msa0772600:intron | 50.0% | |
| GGAGCATGTACTAGAAGCCT+TGG | - | chr5_2:46931991-46932010 | Msa0772600:intron | 50.0% | |
| GCATGTACTAGAAGCCTTGG+CGG | - | chr5_2:46931994-46932013 | Msa0772600:intron | 50.0% | |
| ! | TTTCCAAGTTGGATCCGCCA+AGG | + | chr5_2:46932011-46932030 | None:intergenic | 50.0% |
| CAAGGTGGGCATTTCCAAGT+TGG | + | chr5_2:46932022-46932041 | None:intergenic | 50.0% | |
| GCTAAAGGATGGGAACCTAC+TGG | - | chr5_2:46932076-46932095 | Msa0772600:intron | 50.0% | |
| GTCGCTACCTTTCTCTGATG+AGG | - | chr5_2:46932486-46932505 | Msa0772600:CDS | 50.0% | |
| GCTTCAGCTAGAGACTGCAT+TGG | + | chr5_2:46932532-46932551 | None:intergenic | 50.0% | |
| AGCTGAAGCTGAAACTGACG+GGG | - | chr5_2:46932549-46932568 | Msa0772600:intron | 50.0% | |
| CCAGCAATACTGTCTGGTGT+TGG | + | chr5_2:46932679-46932698 | None:intergenic | 50.0% | |
| CCAACACCAGACAGTATTGC+TGG | - | chr5_2:46932676-46932695 | Msa0772600:CDS | 50.0% | |
| ! | GTTCTGCGTGAAGGTGGGTT+AGG | + | chr5_2:46928990-46929009 | None:intergenic | 55.0% |
| AAGGGGTTCTGCGTGAAGGT+GGG | + | chr5_2:46928995-46929014 | None:intergenic | 55.0% | |
| ATCGACGAGATGGGCCAGAA+GGG | + | chr5_2:46929049-46929068 | None:intergenic | 55.0% | |
| !! | GCTCTAAGAGTTCAGGACCC+AGG | + | chr5_2:46931174-46931193 | None:intergenic | 55.0% |
| ! | GGACTTGGATTGAGGCACTC+TGG | - | chr5_2:46931241-46931260 | Msa0772600:intron | 55.0% |
| GCGAATGCAACATGGTCCAG+GGG | - | chr5_2:46931504-46931523 | Msa0772600:intron | 55.0% | |
| ! | ATGGTCCAGGGGCAGTTTTG+TGG | - | chr5_2:46931515-46931534 | Msa0772600:intron | 55.0% |
| ATACATATGTTGGGGGGGGG+GGG | + | chr5_2:46931578-46931597 | None:intergenic | 55.0% | |
| CATACATATGTTGGGGGGGG+GGG | + | chr5_2:46931579-46931598 | None:intergenic | 55.0% | |
| ! | AAGCCTTGGCGGATCCAACT+TGG | - | chr5_2:46932005-46932024 | Msa0772600:intron | 55.0% |
| TGGAAATGCCCACCTTGTCG+TGG | - | chr5_2:46932025-46932044 | Msa0772600:intron | 55.0% | |
| !! | CTGTATCTGAGCGCCGAGTT+TGG | + | chr5_2:46932243-46932262 | None:intergenic | 55.0% |
| ACTCGGCGCTCAGATACAGT+TGG | - | chr5_2:46932244-46932263 | Msa0772600:intron | 55.0% | |
| CTCGGCGCTCAGATACAGTT+GGG | - | chr5_2:46932245-46932264 | Msa0772600:intron | 55.0% | |
| AGCTGAAACTGACGGGGACA+AGG | - | chr5_2:46932555-46932574 | Msa0772600:intron | 55.0% | |
| GAAGGGGTTCTGCGTGAAGG+TGG | + | chr5_2:46928996-46929015 | None:intergenic | 60.0% | |
| GATCGACGAGATGGGCCAGA+AGG | + | chr5_2:46929050-46929069 | None:intergenic | 60.0% | |
| GCCCATCTCGTCGATCTTCC+AGG | - | chr5_2:46929054-46929073 | Msa0772600:CDS | 60.0% | |
| TACATATGTTGGGGGGGGGG+GGG | + | chr5_2:46931577-46931596 | None:intergenic | 60.0% | |
| GCGCCGTATCAGGTCCAACA+AGG | + | chr5_2:46931939-46931958 | None:intergenic | 60.0% | |
| !! | CTGAGCGCCGAGTTTGGATG+AGG | + | chr5_2:46932237-46932256 | None:intergenic | 60.0% |
| TGGGGGGGGGGGGGAATATG+TGG | + | chr5_2:46931568-46931587 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46928804 | 46932930 | 46928804 | ID=Msa0772600;Name=Msa0772600 |
| chr5_2 | mRNA | 46928804 | 46932930 | 46928804 | ID=Msa0772600-mRNA-1;Parent=Msa0772600;Name=Msa0772600-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.75|0.8|1|1|1|5|201|416 |
| chr5_2 | exon | 46928804 | 46929535 | 46928804 | ID=Msa0772600-mRNA-1:exon:14088;Parent=Msa0772600-mRNA-1 |
| chr5_2 | exon | 46929620 | 46929749 | 46929620 | ID=Msa0772600-mRNA-1:exon:14087;Parent=Msa0772600-mRNA-1 |
| chr5_2 | exon | 46930179 | 46930262 | 46930179 | ID=Msa0772600-mRNA-1:exon:14086;Parent=Msa0772600-mRNA-1 |
| chr5_2 | exon | 46932301 | 46932534 | 46932301 | ID=Msa0772600-mRNA-1:exon:14085;Parent=Msa0772600-mRNA-1 |
| chr5_2 | exon | 46932659 | 46932930 | 46932659 | ID=Msa0772600-mRNA-1:exon:14084;Parent=Msa0772600-mRNA-1 |
| chr5_2 | CDS | 46932659 | 46932930 | 46932659 | ID=Msa0772600-mRNA-1:cds;Parent=Msa0772600-mRNA-1 |
| chr5_2 | CDS | 46932301 | 46932534 | 46932301 | ID=Msa0772600-mRNA-1:cds;Parent=Msa0772600-mRNA-1 |
| chr5_2 | CDS | 46930179 | 46930262 | 46930179 | ID=Msa0772600-mRNA-1:cds;Parent=Msa0772600-mRNA-1 |
| chr5_2 | CDS | 46929620 | 46929749 | 46929620 | ID=Msa0772600-mRNA-1:cds;Parent=Msa0772600-mRNA-1 |
| chr5_2 | CDS | 46929005 | 46929535 | 46929005 | ID=Msa0772600-mRNA-1:cds;Parent=Msa0772600-mRNA-1 |
| chr5_2 | three_prime_UTR | 46928804 | 46929004 | 46928804 | ID=Msa0772600-mRNA-1:three_prime_utr;Parent=Msa0772600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
