Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772990 | sp|O82161|PHI1_TOBAC | 72.887 | 284 | 68 | 4 | 9 | 288 | 7 | 285 | 5.15e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772990 | G7KBC1 | 93.750 | 288 | 18 | 0 | 1 | 288 | 1 | 288 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0772980 | Msa0772990 | 0.860344 | 2.206105e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772990 | MtrunA17_Chr5g0426441 | 93.640 | 283 | 18 | 0 | 6 | 288 | 648 | 930 | 0.0 | 547 |
| Msa0772990 | MtrunA17_Chr5g0426441 | 91.667 | 288 | 23 | 1 | 1 | 288 | 25 | 311 | 0.0 | 538 |
| Msa0772990 | MtrunA17_Chr5g0426441 | 92.933 | 283 | 19 | 1 | 6 | 288 | 339 | 620 | 0.0 | 536 |
| Msa0772990 | MtrunA17_Chr3g0116001 | 77.695 | 269 | 47 | 3 | 20 | 288 | 21 | 276 | 1.79e-152 | 428 |
| Msa0772990 | MtrunA17_Chr3g0116011 | 77.323 | 269 | 48 | 4 | 20 | 288 | 21 | 276 | 4.24e-151 | 424 |
| Msa0772990 | MtrunA17_Chr3g0115951 | 70.671 | 283 | 79 | 3 | 9 | 288 | 8 | 289 | 6.63e-138 | 392 |
| Msa0772990 | MtrunA17_Chr4g0050321 | 59.533 | 257 | 90 | 3 | 32 | 288 | 30 | 272 | 6.99e-105 | 307 |
| Msa0772990 | MtrunA17_Chr2g0279311 | 50.519 | 289 | 128 | 6 | 1 | 288 | 2 | 276 | 4.98e-102 | 300 |
| Msa0772990 | MtrunA17_Chr4g0018171 | 36.000 | 250 | 140 | 6 | 25 | 263 | 53 | 293 | 6.06e-45 | 155 |
| Msa0772990 | MtrunA17_Chr1g0188071 | 34.483 | 261 | 150 | 6 | 6 | 256 | 33 | 282 | 1.38e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772990 | AT4G08950.1 | 71.004 | 269 | 72 | 4 | 24 | 288 | 20 | 286 | 4.46e-132 | 377 |
| Msa0772990 | AT1G35140.1 | 63.194 | 288 | 99 | 3 | 1 | 288 | 1 | 281 | 1.77e-126 | 363 |
| Msa0772990 | AT5G64260.1 | 55.357 | 280 | 115 | 4 | 10 | 288 | 7 | 277 | 6.68e-105 | 308 |
| Msa0772990 | AT5G09440.1 | 53.846 | 273 | 92 | 7 | 18 | 288 | 10 | 250 | 2.74e-87 | 262 |
| Msa0772990 | AT5G51550.1 | 35.294 | 255 | 145 | 6 | 20 | 263 | 38 | 283 | 1.87e-44 | 154 |
| Msa0772990 | AT2G35150.1 | 33.453 | 278 | 155 | 11 | 6 | 263 | 1 | 268 | 3.56e-38 | 137 |
| Msa0772990 | AT3G02970.1 | 30.657 | 274 | 152 | 9 | 47 | 288 | 37 | 304 | 8.07e-36 | 131 |
| Msa0772990 | AT2G17230.1 | 31.301 | 246 | 147 | 8 | 22 | 256 | 64 | 298 | 1.17e-33 | 126 |
Find 65 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_2:+47586213 | Msa0772990:CDS |
| CTAGATGAGGATTACTCTTT+AGG | 0.183448 | 5_2:+47585961 | Msa0772990:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.231019 | 5_2:-47586261 | None:intergenic |
| GGAACCCACGGTTCTTCTTA+TGG | 0.267702 | 5_2:+47586105 | Msa0772990:CDS |
| TGGATATGCTGGGGACCTTT+TGG | 0.271387 | 5_2:+47586425 | Msa0772990:CDS |
| AACATAAATTCGCATACATT+TGG | 0.287196 | 5_2:+47586148 | Msa0772990:CDS |
| AATCAGTTATGATAGCTCTT+TGG | 0.295676 | 5_2:-47585792 | None:intergenic |
| GCTTCCAAAGGATCTTCTTT+TGG | 0.313699 | 5_2:-47586360 | None:intergenic |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5_2:-47586002 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.324103 | 5_2:-47586225 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+TGG | 0.335289 | 5_2:+47586393 | Msa0772990:CDS |
| ATCAGTTATGATAGCTCTTT+GGG | 0.336613 | 5_2:-47585791 | None:intergenic |
| ACATAAATTCGCATACATTT+GGG | 0.370983 | 5_2:+47586149 | Msa0772990:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_2:-47586213 | None:intergenic |
| AGATCCTTTGGAAGCTGCTT+CGG | 0.384803 | 5_2:+47586368 | Msa0772990:CDS |
| AGGACCAAAAGAAGATCCTT+TGG | 0.394693 | 5_2:+47586356 | Msa0772990:CDS |
| AAATCTCAGTCAACCTCATT+TGG | 0.398608 | 5_2:+47585749 | Msa0772990:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.407467 | 5_2:-47585723 | None:intergenic |
| TGGTCCACAAAGTGCACCTT+TGG | 0.411324 | 5_2:+47586233 | Msa0772990:CDS |
| GGAGCTTATCCTGGATATGC+TGG | 0.417598 | 5_2:+47586414 | Msa0772990:CDS |
| GGGACTGTAACCAATCCTTT+TGG | 0.434122 | 5_2:+47586318 | Msa0772990:CDS |
| GAAGCTGCTTCGGCTTGTAC+TGG | 0.438736 | 5_2:+47586378 | Msa0772990:CDS |
| TCTTATGGTGCACGCGTGAA+TGG | 0.440385 | 5_2:+47586120 | Msa0772990:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_2:-47585702 | None:intergenic |
| TATGCTAATGGAGCTTATCC+TGG | 0.451364 | 5_2:+47586405 | Msa0772990:CDS |
| AGCTGTTAGAACAACGTTGA+TGG | 0.452654 | 5_2:-47586043 | None:intergenic |
| TTTAAGTTGTTGGTCCGATT+CGG | 0.453958 | 5_2:-47585692 | None:intergenic |
| AATAACGATGTGGGTCTTGA+CGG | 0.470820 | 5_2:+47586264 | Msa0772990:CDS |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5_2:+47586006 | Msa0772990:CDS |
| GACGTGGTTGTTCCTCGTTT+AGG | 0.491258 | 5_2:-47585835 | None:intergenic |
| TGAAAATAACCATCACCAAA+AGG | 0.492485 | 5_2:-47586333 | None:intergenic |
| TGCTAGAAAACTCACCGAAT+CGG | 0.497206 | 5_2:+47585678 | Msa0772990:CDS |
| TCAGTCAACCTCATTTGGTA+TGG | 0.501216 | 5_2:+47585754 | Msa0772990:CDS |
| AAAAGGTCCCCAGCATATCC+AGG | 0.509180 | 5_2:-47586423 | None:intergenic |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5_2:+47586063 | Msa0772990:CDS |
| AAATTCGCATACATTTGGGT+TGG | 0.526466 | 5_2:+47586153 | Msa0772990:CDS |
| GCAACCAAAGGTGCACTTTG+TGG | 0.529656 | 5_2:-47586237 | None:intergenic |
| CGATGTGGGTCTTGACGGAA+TGG | 0.534055 | 5_2:+47586269 | Msa0772990:CDS |
| GAGCTTATCCTGGATATGCT+GGG | 0.538875 | 5_2:+47586415 | Msa0772990:CDS |
| TCGTTATTTGGTGCAACCAA+AGG | 0.539712 | 5_2:-47586249 | None:intergenic |
| GCTAAACTAGCTCTCTCACT+AGG | 0.543046 | 5_2:+47585928 | Msa0772990:CDS |
| ATAACCATCACCAAAAGGAT+TGG | 0.543866 | 5_2:-47586328 | None:intergenic |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.545259 | 5_2:+47585724 | Msa0772990:CDS |
| GTTATGATAGCTCTTTGGGA+TGG | 0.549152 | 5_2:-47585787 | None:intergenic |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_2:-47585862 | None:intergenic |
| TCCTCGTTTAGGATAAGAGA+GGG | 0.589557 | 5_2:-47585824 | None:intergenic |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_2:+47586177 | Msa0772990:CDS |
| TCAAGTAGGTGTGGAACCCA+CGG | 0.602320 | 5_2:+47586093 | Msa0772990:CDS |
| AGGTGCTCAAATTCTAGATG+AGG | 0.610658 | 5_2:+47585948 | Msa0772990:CDS |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_2:+47585860 | Msa0772990:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_2:-47586221 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.612359 | 5_2:+47586254 | Msa0772990:CDS |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_2:+47585709 | Msa0772990:CDS |
| GTTGCACCAAATAACGATGT+GGG | 0.631307 | 5_2:+47586255 | Msa0772990:CDS |
| TTCCTCGTTTAGGATAAGAG+AGG | 0.637364 | 5_2:-47585825 | None:intergenic |
| AGCTTATCCTGGATATGCTG+GGG | 0.641073 | 5_2:+47586416 | Msa0772990:CDS |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_2:-47585872 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.652479 | 5_2:-47586372 | None:intergenic |
| TGCACCATAAGAAGAACCGT+GGG | 0.675126 | 5_2:-47586109 | None:intergenic |
| GTGCACCATAAGAAGAACCG+TGG | 0.675290 | 5_2:-47586110 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.679785 | 5_2:+47586190 | Msa0772990:CDS |
| GGCAACTGATGGTTGTGACG+TGG | 0.693973 | 5_2:-47585851 | None:intergenic |
| TCGTTTAGGATAAGAGAGGG+AGG | 0.693979 | 5_2:-47585821 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_2:+47585857 | Msa0772990:CDS |
| TCCCTCTCTTATCCTAAACG+AGG | 0.723430 | 5_2:+47585823 | Msa0772990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_2:47585705-47585724 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_2:47585709-47585728 | Msa0772990:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_2:47585914-47585933 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | + | chr5_2:47586148-47586167 | Msa0772990:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | + | chr5_2:47586149-47586168 | Msa0772990:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_2:47585705-47585724 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_2:47585709-47585728 | Msa0772990:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_2:47585914-47585933 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | + | chr5_2:47586148-47586167 | Msa0772990:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | + | chr5_2:47586149-47586168 | Msa0772990:CDS | 25.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_2:47585765-47585784 | None:intergenic | 30.0% |
| ATCAGTTATGATAGCTCTTT+GGG | - | chr5_2:47585794-47585813 | None:intergenic | 30.0% | |
| AATCAGTTATGATAGCTCTT+TGG | - | chr5_2:47585795-47585814 | None:intergenic | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | - | chr5_2:47586336-47586355 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | + | chr5_2:47586336-47586355 | Msa0772990:CDS | 30.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_2:47585765-47585784 | None:intergenic | 30.0% |
| ATCAGTTATGATAGCTCTTT+GGG | - | chr5_2:47585794-47585813 | None:intergenic | 30.0% | |
| AATCAGTTATGATAGCTCTT+TGG | - | chr5_2:47585795-47585814 | None:intergenic | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | - | chr5_2:47586336-47586355 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | + | chr5_2:47586336-47586355 | Msa0772990:CDS | 30.0% |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_2:47585695-47585714 | None:intergenic | 35.0% |
| ! | AGATTTTACCAGTGAGAAGA+GGG | - | chr5_2:47585735-47585754 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | + | chr5_2:47585749-47585768 | Msa0772990:CDS | 35.0% | |
| !! | ACTTTTTATTGTTGGTGAGC+TGG | - | chr5_2:47585906-47585925 | None:intergenic | 35.0% |
| CTAGATGAGGATTACTCTTT+AGG | + | chr5_2:47585961-47585980 | Msa0772990:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_2:47586005-47586024 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_2:47586006-47586025 | Msa0772990:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_2:47586079-47586098 | Msa0772990:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | + | chr5_2:47586153-47586172 | Msa0772990:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_2:47586216-47586235 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_2:47586213-47586232 | Msa0772990:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_2:47586224-47586243 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_2:47586297-47586316 | Msa0772990:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | + | chr5_2:47586298-47586317 | Msa0772990:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | - | chr5_2:47586331-47586350 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+TGG | + | chr5_2:47586393-47586412 | Msa0772990:CDS | 35.0% |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_2:47585695-47585714 | None:intergenic | 35.0% |
| ! | AGATTTTACCAGTGAGAAGA+GGG | - | chr5_2:47585735-47585754 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | + | chr5_2:47585749-47585768 | Msa0772990:CDS | 35.0% | |
| !! | ACTTTTTATTGTTGGTGAGC+TGG | - | chr5_2:47585906-47585925 | None:intergenic | 35.0% |
| CTAGATGAGGATTACTCTTT+AGG | + | chr5_2:47585961-47585980 | Msa0772990:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_2:47586005-47586024 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_2:47586006-47586025 | Msa0772990:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_2:47586079-47586098 | Msa0772990:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | + | chr5_2:47586153-47586172 | Msa0772990:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_2:47586216-47586235 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_2:47586213-47586232 | Msa0772990:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_2:47586224-47586243 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_2:47586297-47586316 | Msa0772990:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | + | chr5_2:47586298-47586317 | Msa0772990:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | - | chr5_2:47586331-47586350 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+TGG | + | chr5_2:47586393-47586412 | Msa0772990:CDS | 35.0% |
| TGCTAGAAAACTCACCGAAT+CGG | + | chr5_2:47585678-47585697 | Msa0772990:CDS | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | - | chr5_2:47585736-47585755 | None:intergenic | 40.0% |
| TCAGTCAACCTCATTTGGTA+TGG | + | chr5_2:47585754-47585773 | Msa0772990:CDS | 40.0% | |
| ! | GTTATGATAGCTCTTTGGGA+TGG | - | chr5_2:47585790-47585809 | None:intergenic | 40.0% |
| ! | TCCTCGTTTAGGATAAGAGA+GGG | - | chr5_2:47585827-47585846 | None:intergenic | 40.0% |
| ! | TTCCTCGTTTAGGATAAGAG+AGG | - | chr5_2:47585828-47585847 | None:intergenic | 40.0% |
| AGGTGCTCAAATTCTAGATG+AGG | + | chr5_2:47585948-47585967 | Msa0772990:CDS | 40.0% | |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_2:47586011-47586030 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_2:47586046-47586065 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_2:47586084-47586103 | Msa0772990:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_2:47586177-47586196 | Msa0772990:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_2:47586228-47586247 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | - | chr5_2:47586252-47586271 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_2:47586255-47586274 | Msa0772990:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_2:47586264-47586283 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | + | chr5_2:47586264-47586283 | Msa0772990:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | + | chr5_2:47586324-47586343 | Msa0772990:CDS | 40.0% |
| AGGACCAAAAGAAGATCCTT+TGG | + | chr5_2:47586356-47586375 | Msa0772990:CDS | 40.0% | |
| ! | GCTTCCAAAGGATCTTCTTT+TGG | - | chr5_2:47586363-47586382 | None:intergenic | 40.0% |
| TATGCTAATGGAGCTTATCC+TGG | + | chr5_2:47586405-47586424 | Msa0772990:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_2:47586443-47586462 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_2:47586441-47586460 | Msa0772990:CDS | 40.0% |
| TGCTAGAAAACTCACCGAAT+CGG | + | chr5_2:47585678-47585697 | Msa0772990:CDS | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | - | chr5_2:47585736-47585755 | None:intergenic | 40.0% |
| TCAGTCAACCTCATTTGGTA+TGG | + | chr5_2:47585754-47585773 | Msa0772990:CDS | 40.0% | |
| ! | GTTATGATAGCTCTTTGGGA+TGG | - | chr5_2:47585790-47585809 | None:intergenic | 40.0% |
| ! | TCCTCGTTTAGGATAAGAGA+GGG | - | chr5_2:47585827-47585846 | None:intergenic | 40.0% |
| ! | TTCCTCGTTTAGGATAAGAG+AGG | - | chr5_2:47585828-47585847 | None:intergenic | 40.0% |
| AGGTGCTCAAATTCTAGATG+AGG | + | chr5_2:47585948-47585967 | Msa0772990:CDS | 40.0% | |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_2:47586011-47586030 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_2:47586046-47586065 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_2:47586084-47586103 | Msa0772990:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_2:47586177-47586196 | Msa0772990:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_2:47586228-47586247 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | - | chr5_2:47586252-47586271 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_2:47586255-47586274 | Msa0772990:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_2:47586264-47586283 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | + | chr5_2:47586264-47586283 | Msa0772990:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | + | chr5_2:47586324-47586343 | Msa0772990:CDS | 40.0% |
| AGGACCAAAAGAAGATCCTT+TGG | + | chr5_2:47586356-47586375 | Msa0772990:CDS | 40.0% | |
| ! | GCTTCCAAAGGATCTTCTTT+TGG | - | chr5_2:47586363-47586382 | None:intergenic | 40.0% |
| TATGCTAATGGAGCTTATCC+TGG | + | chr5_2:47586405-47586424 | Msa0772990:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_2:47586443-47586462 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_2:47586441-47586460 | Msa0772990:CDS | 40.0% |
| ! | TCGTTTAGGATAAGAGAGGG+AGG | - | chr5_2:47585824-47585843 | None:intergenic | 45.0% |
| TCCCTCTCTTATCCTAAACG+AGG | + | chr5_2:47585823-47585842 | Msa0772990:CDS | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_2:47585875-47585894 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_2:47585928-47585947 | Msa0772990:CDS | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_2:47586063-47586082 | Msa0772990:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | - | chr5_2:47586112-47586131 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_2:47586254-47586273 | Msa0772990:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | + | chr5_2:47586318-47586337 | Msa0772990:CDS | 45.0% |
| ! | AGATCCTTTGGAAGCTGCTT+CGG | + | chr5_2:47586368-47586387 | Msa0772990:CDS | 45.0% |
| GAGCTTATCCTGGATATGCT+GGG | + | chr5_2:47586415-47586434 | Msa0772990:CDS | 45.0% | |
| AGCTTATCCTGGATATGCTG+GGG | + | chr5_2:47586416-47586435 | Msa0772990:CDS | 45.0% | |
| ! | TCGTTTAGGATAAGAGAGGG+AGG | - | chr5_2:47585824-47585843 | None:intergenic | 45.0% |
| TCCCTCTCTTATCCTAAACG+AGG | + | chr5_2:47585823-47585842 | Msa0772990:CDS | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_2:47585875-47585894 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_2:47585928-47585947 | Msa0772990:CDS | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_2:47586063-47586082 | Msa0772990:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | - | chr5_2:47586112-47586131 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_2:47586254-47586273 | Msa0772990:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | + | chr5_2:47586318-47586337 | Msa0772990:CDS | 45.0% |
| ! | AGATCCTTTGGAAGCTGCTT+CGG | + | chr5_2:47586368-47586387 | Msa0772990:CDS | 45.0% |
| GAGCTTATCCTGGATATGCT+GGG | + | chr5_2:47586415-47586434 | Msa0772990:CDS | 45.0% | |
| AGCTTATCCTGGATATGCTG+GGG | + | chr5_2:47586416-47586435 | Msa0772990:CDS | 45.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | - | chr5_2:47585838-47585857 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+CGG | + | chr5_2:47586093-47586112 | Msa0772990:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | + | chr5_2:47586105-47586124 | Msa0772990:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | - | chr5_2:47586113-47586132 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | + | chr5_2:47586120-47586139 | Msa0772990:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_2:47586190-47586209 | Msa0772990:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | + | chr5_2:47586233-47586252 | Msa0772990:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | - | chr5_2:47586240-47586259 | None:intergenic | 50.0% |
| GGAGCTTATCCTGGATATGC+TGG | + | chr5_2:47586414-47586433 | Msa0772990:CDS | 50.0% | |
| AAAAGGTCCCCAGCATATCC+AGG | - | chr5_2:47586426-47586445 | None:intergenic | 50.0% | |
| ! | TGGATATGCTGGGGACCTTT+TGG | + | chr5_2:47586425-47586444 | Msa0772990:CDS | 50.0% |
| ! | ATATGCTGGGGACCTTTTGG+TGG | + | chr5_2:47586428-47586447 | Msa0772990:CDS | 50.0% |
| GACGTGGTTGTTCCTCGTTT+AGG | - | chr5_2:47585838-47585857 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+CGG | + | chr5_2:47586093-47586112 | Msa0772990:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | + | chr5_2:47586105-47586124 | Msa0772990:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | - | chr5_2:47586113-47586132 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | + | chr5_2:47586120-47586139 | Msa0772990:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_2:47586190-47586209 | Msa0772990:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | + | chr5_2:47586233-47586252 | Msa0772990:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | - | chr5_2:47586240-47586259 | None:intergenic | 50.0% |
| GGAGCTTATCCTGGATATGC+TGG | + | chr5_2:47586414-47586433 | Msa0772990:CDS | 50.0% | |
| AAAAGGTCCCCAGCATATCC+AGG | - | chr5_2:47586426-47586445 | None:intergenic | 50.0% | |
| ! | TGGATATGCTGGGGACCTTT+TGG | + | chr5_2:47586425-47586444 | Msa0772990:CDS | 50.0% |
| ! | ATATGCTGGGGACCTTTTGG+TGG | + | chr5_2:47586428-47586447 | Msa0772990:CDS | 50.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_2:47585726-47585745 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | chr5_2:47585724-47585743 | Msa0772990:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_2:47585854-47585873 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_2:47585857-47585876 | Msa0772990:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_2:47585860-47585879 | Msa0772990:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_2:47585865-47585884 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | + | chr5_2:47586269-47586288 | Msa0772990:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_2:47586375-47586394 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_2:47586378-47586397 | Msa0772990:CDS | 55.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_2:47585726-47585745 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | chr5_2:47585724-47585743 | Msa0772990:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_2:47585854-47585873 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_2:47585857-47585876 | Msa0772990:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_2:47585860-47585879 | Msa0772990:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_2:47585865-47585884 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | + | chr5_2:47586269-47586288 | Msa0772990:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_2:47586375-47586394 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_2:47586378-47586397 | Msa0772990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47585607 | 47586473 | 47585607 | ID=Msa0772990;Name=Msa0772990 |
| chr5_2 | mRNA | 47585607 | 47586473 | 47585607 | ID=Msa0772990-mRNA-1;Parent=Msa0772990;Name=Msa0772990-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|288 |
| chr5_2 | exon | 47585607 | 47586473 | 47585607 | ID=Msa0772990-mRNA-1:exon:14242;Parent=Msa0772990-mRNA-1 |
| chr5_2 | CDS | 47585607 | 47586473 | 47585607 | ID=Msa0772990-mRNA-1:cds;Parent=Msa0772990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
