AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0780700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0780700 MtrunA17_Chr5g0441801 98.968 872 8 1 1 872 1 871 0.0 1780
Msa0780700 MtrunA17_Chr3g0133141 48.673 678 302 10 49 722 4 639 1.07e-171 513
Msa0780700 MtrunA17_Chr5g0427271 65.608 378 109 3 17 374 36 412 4.85e-162 493
Msa0780700 MtrunA17_Chr4g0001751 69.613 181 55 0 59 239 11 191 4.82e-83 264
Msa0780700 MtrunA17_Chr4g0001651 50.000 116 58 0 580 695 4 119 5.38e-26 104
Msa0780700 MtrunA17_Chr4g0001741 67.442 86 28 0 289 374 13 98 2.24e-24 103
Msa0780700 MtrunA17_Chr4g0001731 41.135 141 58 1 580 695 10 150 6.14e-21 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0780700 AT5G19390.1 70.136 884 238 12 1 872 1 870 0.0 1107
Msa0780700 AT5G19390.2 70.136 884 238 12 1 872 1 870 0.0 1107
Msa0780700 AT5G19390.3 69.988 823 223 10 1 813 1 809 0.0 1019
Msa0780700 AT5G12150.1 63.636 858 263 11 1 855 1 812 0.0 998
Msa0780700 AT5G12150.2 67.063 756 233 7 1 755 1 741 0.0 949
Msa0780700 AT5G19390.4 71.646 723 183 8 1 715 1 709 0.0 933
Msa0780700 AT4G24580.2 48.818 846 376 18 12 851 54 848 0.0 650
Msa0780700 AT4G24580.1 48.818 846 376 18 12 851 54 848 0.0 650
Msa0780700 AT4G24580.3 55.659 645 264 11 12 652 54 680 0.0 603

Find 240 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCCTTGGTGAAGAATTT+TGG 0.139836 5_2:-62741922 Msa0780700:three_prime_UTR
AGGAAATATTAGTAACATTT+TGG 0.168689 5_2:-62741605 Msa0780700:three_prime_UTR
TTTATTTCGTATATTACTTT+AGG 0.176625 5_2:-62741714 Msa0780700:three_prime_UTR
GAGCTTGGTGTTGTTGATTC+TGG 0.190473 5_2:-62742486 Msa0780700:CDS
ATTATTATGAAGTTGTTATT+TGG 0.240644 5_2:+62741941 None:intergenic
CATAACCTTGATTTGAACTA+TGG 0.247874 5_2:-62742023 Msa0780700:CDS
AGGGTATAACCCTTCCCTTC+TGG 0.248195 5_2:+62751664 None:intergenic
AATATTGATGTAAAAGAAAA+TGG 0.272680 5_2:-62745456 Msa0780700:CDS
GTGGAATCGGTTGATTCTTC+TGG 0.276949 5_2:-62744032 Msa0780700:CDS
TTCATGCTGTACTGCTTTAT+TGG 0.278832 5_2:-62747127 Msa0780700:CDS
TGCAATGCGCTGTGCTATAT+TGG 0.280576 5_2:-62746019 Msa0780700:CDS
GTACTAAGCGGTCAACATTC+TGG 0.280744 5_2:-62744572 Msa0780700:CDS
GTCTTTGCTGATTAAGTTGA+TGG 0.283757 5_2:+62743247 None:intergenic
TATGATGGGTTGATTGGATT+GGG 0.284774 5_2:-62751472 Msa0780700:five_prime_UTR
TCAATTTACAGCATGTTCTA+AGG 0.288440 5_2:-62747176 Msa0780700:intron
GCGCTTCAATCACAGGTAAA+TGG 0.291334 5_2:+62744649 None:intergenic
CTCACGGTTGAGGAAGATTC+TGG 0.297089 5_2:+62743175 None:intergenic
GGTATTGACTTAAACAATTC+AGG 0.298761 5_2:-62749474 Msa0780700:CDS
CTTCTCATTCTAACGTGAAT+AGG 0.305280 5_2:-62745845 Msa0780700:CDS
TCCTCAGACAGATGGTTATC+AGG 0.308425 5_2:+62744792 None:intergenic
TTATTTCGTATATTACTTTA+GGG 0.319660 5_2:-62741713 Msa0780700:three_prime_UTR
TTCTGCTGTTGCTGCTTGCA+TGG 0.325403 5_2:-62745814 Msa0780700:CDS
AGGGGAGGAGGTGGAGTTTG+TGG 0.325867 5_2:-62741694 Msa0780700:three_prime_UTR
CTCTGTAACAAACGTCGATT+TGG 0.333318 5_2:+62745982 None:intergenic
GAGTTGAAATGCTTTCCTTT+TGG 0.333612 5_2:-62741763 Msa0780700:three_prime_UTR
CAAGCGTCCAGTTAAGTCTT+TGG 0.336135 5_2:-62748929 Msa0780700:CDS
TGAATCCATCCCACGTGAAT+TGG 0.336829 5_2:+62743436 None:intergenic
ATGTTATGTTAATAGATAGA+TGG 0.340013 5_2:-62741662 Msa0780700:three_prime_UTR
CTAGGACTCGAGTCTATAAA+TGG 0.340472 5_2:+62742552 None:intergenic
TGCCCTTTGCAGCAGGCATT+TGG 0.343718 5_2:-62744888 Msa0780700:intron
ACCAAGTGCTGCCCTTGTTA+TGG 0.347787 5_2:-62749222 Msa0780700:CDS
TTGGTGTTGGAGTTTGCTTT+TGG 0.349947 5_2:-62751500 Msa0780700:five_prime_UTR
ATTTGTATCCTTATCATTTG+TGG 0.357505 5_2:-62741863 Msa0780700:three_prime_UTR
GATCTCTATGATGGGTTGAT+TGG 0.358051 5_2:-62751478 Msa0780700:five_prime_UTR
GCTCAGTGCCTTCCACTTCA+AGG 0.363371 5_2:-62742464 Msa0780700:CDS
AGCAATAATTACCACTTTGT+TGG 0.364472 5_2:-62745673 Msa0780700:CDS
AACTCGAGAATCAGCTGAAA+TGG 0.367018 5_2:+62745515 None:intergenic
ATTGAAGCGCAATCAGGTTC+TGG 0.368082 5_2:-62744636 Msa0780700:CDS
CTTCTGAAGTCTCCGCCTTA+AGG 0.368267 5_2:+62749291 None:intergenic
CTCTTACGGCCTCTGTTAGC+TGG 0.375756 5_2:-62745783 Msa0780700:CDS
GGGTATAACCCTTCCCTTCT+GGG 0.375855 5_2:+62751665 None:intergenic
TTCACATAGATTGAAATTAG+TGG 0.379999 5_2:+62741560 None:intergenic
GTTGGTTTGAGCATGTCTTC+AGG 0.383362 5_2:-62743467 Msa0780700:CDS
GCTCGACCATCGCGCCCGTC+TGG 0.384846 5_2:+62749320 None:intergenic
CCAACAACCAAAGACTTAAC+TGG 0.384860 5_2:+62748922 None:intergenic
GCATGGCACCCTTGCTCTTA+CGG 0.389496 5_2:-62745797 Msa0780700:CDS
GGAAAGGCGTTCGCAGTTGA+TGG 0.389567 5_2:-62742054 Msa0780700:CDS
CCAAGTGCTGCCCTTGTTAT+GGG 0.390257 5_2:-62749221 Msa0780700:CDS
CAGCACTTGGTGCTTGTGCA+AGG 0.396878 5_2:+62749234 None:intergenic
TACTAAGCGGTCAACATTCT+GGG 0.399894 5_2:-62744571 Msa0780700:CDS
GGTTGATTGGATTGGGGACA+AGG 0.403049 5_2:-62751465 Msa0780700:five_prime_UTR
CTTCAGAAGACTTGTTTGAA+TGG 0.411277 5_2:-62749277 Msa0780700:CDS
TTTCAACAGGAGAGTGTGTT+GGG 0.412428 5_2:-62742645 Msa0780700:intron
GAAGTCACCGTCAGTGGAAT+CGG 0.419592 5_2:-62744045 Msa0780700:CDS
CCAGTTAAGTCTTTGGTTGT+TGG 0.422237 5_2:-62748922 Msa0780700:CDS
TGTGCCACTACTAGCTTTAC+CGG 0.425553 5_2:+62744602 None:intergenic
ATAACGAGTACGAACATTGA+TGG 0.425634 5_2:+62749147 None:intergenic
CAGTGATCTTTATGATTACA+AGG 0.426805 5_2:-62745337 Msa0780700:intron
TATTGCTTGTGCGTTATTTG+CGG 0.428261 5_2:+62745689 None:intergenic
CCTGTGATTGAAGCGCAATC+AGG 0.428704 5_2:-62744642 Msa0780700:CDS
ATTGGATTGGGGACAAGGAT+TGG 0.430281 5_2:-62751460 Msa0780700:five_prime_UTR
CTATGATGGGTTGATTGGAT+TGG 0.431327 5_2:-62751473 Msa0780700:five_prime_UTR
TATACTCACGCGCACATCAT+TGG 0.431572 5_2:-62750034 Msa0780700:CDS
TTTCAGGTGACAGAATATAA+TGG 0.431584 5_2:-62742140 Msa0780700:intron
ATGCTGTACTGCTTTATTGG+AGG 0.438521 5_2:-62747124 Msa0780700:CDS
CTTAGAGCTGCATTGGAAGT+TGG 0.440680 5_2:-62743485 Msa0780700:CDS
CAAGTATTGGCTTCTGGTAA+TGG 0.443179 5_2:-62742597 Msa0780700:CDS
ATCACAGGTAAATGGTTGCC+AGG 0.445948 5_2:+62744657 None:intergenic
TTATGAAGTTGTTATTTGGC+TGG 0.446322 5_2:+62741945 None:intergenic
GTAAACCATGTCTTGGGAAG+TGG 0.446596 5_2:+62741995 None:intergenic
AGCACTTGGTGCTTGTGCAA+GGG 0.446894 5_2:+62749235 None:intergenic
CACAGAATCTTATCGTTCCA+TGG 0.447762 5_2:-62744703 Msa0780700:CDS
TTCTGAAGTCTCCGCCTTAA+GGG 0.450238 5_2:+62749292 None:intergenic
AAAGGACAAGTATTGGCTTC+TGG 0.450625 5_2:-62742603 Msa0780700:CDS
GTGTTTGAAATTAGTGGTAA+TGG 0.451727 5_2:-62751378 Msa0780700:five_prime_UTR
GGAGGAGATGATTCTGATGT+TGG 0.452355 5_2:-62744867 Msa0780700:CDS
GTACAGCATGAAGCTGGAAC+TGG 0.454511 5_2:+62747138 None:intergenic
AAAACTGCGAGAAAATCAAT+TGG 0.454521 5_2:-62751708 Msa0780700:five_prime_UTR
GAGGATGAATTTGATGTTAG+TGG 0.458921 5_2:-62745747 Msa0780700:CDS
CCTTTGCAGCAGGCATTTGG+AGG 0.461689 5_2:-62744885 Msa0780700:intron
TCTTCAAGTGCTAGCAGAAT+CGG 0.462426 5_2:+62748895 None:intergenic
CAGCAAAGACAGCATCACTA+TGG 0.464164 5_2:-62743234 Msa0780700:CDS
GTATTAGAAGCCCCAGGTCT+AGG 0.464658 5_2:+62751293 None:intergenic
TTTGCAGGAACTAAAGTTGA+AGG 0.469978 5_2:-62747851 Msa0780700:intron
CGTTGTTGGTGACTGTGTTA+AGG 0.470779 5_2:-62747459 Msa0780700:intron
TGGTCGAGCGTTCACCCTTA+AGG 0.471886 5_2:-62749306 Msa0780700:CDS
TACTTGGTACTGAAAGTTTG+TGG 0.473350 5_2:-62751562 Msa0780700:five_prime_UTR
TTGATGGTGTTTGAAATTAG+TGG 0.480093 5_2:-62751384 Msa0780700:five_prime_UTR
AACAACTTCATAATAATCCT+TGG 0.482974 5_2:-62741935 Msa0780700:three_prime_UTR
AATAATTACCACTTTGTTGG+AGG 0.483805 5_2:-62745670 Msa0780700:CDS
TTGGTTTGTAAACCATGTCT+TGG 0.488897 5_2:+62741988 None:intergenic
AGCTTTGCATGAACGACGCT+TGG 0.491120 5_2:-62743645 Msa0780700:CDS
TACAAGCAAGCTTAGAGAGA+AGG 0.491160 5_2:-62743673 Msa0780700:CDS
TCTGTGGAAGGCAACACAAT+TGG 0.491752 5_2:+62744720 None:intergenic
GATTTCCAATTCACGTGGGA+TGG 0.491996 5_2:-62743441 Msa0780700:CDS
TATTACTTTAGGGGAGGAGG+TGG 0.493512 5_2:-62741703 Msa0780700:three_prime_UTR
TGGCTTCTGGTAATGGTAGT+AGG 0.494599 5_2:-62742590 Msa0780700:CDS
AACAAACGTCGATTTGGCTC+TGG 0.496235 5_2:+62745988 None:intergenic
TGGATTAGGTGAGATGAGGA+AGG 0.498007 5_2:+62751749 None:intergenic
CTTCCCCACCTCTCTGAGGA+AGG 0.499155 5_2:+62749514 None:intergenic
TACCTCTGCTGCCCTTGAAG+TGG 0.499455 5_2:+62742452 None:intergenic
TGTTATGTTAATAGATAGAT+GGG 0.500074 5_2:-62741661 Msa0780700:three_prime_UTR
TAGACCTGGGGCTTCTAATA+CGG 0.500762 5_2:-62751291 Msa0780700:intron
GAGGGATCTTAGAGCTGCAT+TGG 0.502833 5_2:-62743492 Msa0780700:CDS
ACCTTTCACTACCAAAATAG+AGG 0.503881 5_2:+62741791 None:intergenic
GAGGAAGATGCGCACGTTGT+TGG 0.504636 5_2:-62747473 Msa0780700:CDS
GATACAACTGATTCTATTGA+CGG 0.505893 5_2:-62749176 Msa0780700:CDS
GGAAATGTCTGCTTCTTTAG+CGG 0.508657 5_2:-62751327 Msa0780700:exon
TTTCATGATTACAGTATGCA+AGG 0.509536 5_2:+62743029 None:intergenic
GGTTCTGGAAAGCAAACAAC+CGG 0.511044 5_2:-62744621 Msa0780700:CDS
GTATATTACTTTAGGGGAGG+AGG 0.511732 5_2:-62741706 Msa0780700:three_prime_UTR
CAACTCCATGATGGTGATGT+TGG 0.512334 5_2:+62741969 None:intergenic
AAAGCAGTACAGCATGAAGC+TGG 0.512801 5_2:+62747132 None:intergenic
CTCAGTGCCTTCCACTTCAA+GGG 0.514840 5_2:-62742463 Msa0780700:CDS
CCTGATTGCGCTTCAATCAC+AGG 0.516573 5_2:+62744642 None:intergenic
CATTGAGACCACAAATGATA+AGG 0.517241 5_2:+62741855 None:intergenic
TTCTTCCACTTCCCAAGACA+TGG 0.519325 5_2:-62742000 Msa0780700:CDS
AGCGGTCAACATTCTGGGGC+AGG 0.523790 5_2:-62744566 Msa0780700:CDS
GAGGAAGATTCTGGGCATGC+TGG 0.526930 5_2:+62743184 None:intergenic
AAAGGTTGAGTTTGATGCAG+AGG 0.527372 5_2:-62747492 Msa0780700:CDS
AAATATCAAAGGACAAGTAT+TGG 0.527848 5_2:-62742610 Msa0780700:CDS
AAGAACCATAGTTCAAATCA+AGG 0.528185 5_2:+62742018 None:intergenic
AGTGAAAGTAGTGGTTATGC+TGG 0.528718 5_2:-62745360 Msa0780700:CDS
TTTACAAGAAATTGATCGCA+AGG 0.529791 5_2:-62746055 Msa0780700:intron
AAATTTCACCCCAGAAGGGA+AGG 0.530930 5_2:-62751674 Msa0780700:five_prime_UTR
ACACAAAATTTCACCCCAGA+AGG 0.531641 5_2:-62751679 Msa0780700:five_prime_UTR
ATTTCAACAGGAGAGTGTGT+TGG 0.532027 5_2:-62742646 Msa0780700:intron
TTGCTGAAGCTGATGTGGCT+AGG 0.533496 5_2:-62743296 Msa0780700:CDS
TTCCATTGTGTCCCATAACA+AGG 0.533878 5_2:+62749210 None:intergenic
AAATTGATCGCAAGGAGGCT+AGG 0.535648 5_2:-62746047 Msa0780700:CDS
TGTCAGCATACTCACGGTTG+AGG 0.536698 5_2:+62743165 None:intergenic
TCACGGTTGAGGAAGATTCT+GGG 0.537133 5_2:+62743176 None:intergenic
TGATGTAAACATATAGTACT+TGG 0.538006 5_2:-62751578 Msa0780700:five_prime_UTR
AGAACAGTTGCAAGCTGAGA+GGG 0.542656 5_2:-62743510 Msa0780700:CDS
AGAGTGTGTTGGGCTCTGAT+TGG 0.544640 5_2:-62742635 Msa0780700:CDS
ATTAGTGGTAATGGCAATGT+TGG 0.544766 5_2:-62751369 Msa0780700:five_prime_UTR
GTGGAAGGCAACACAATTGG+TGG 0.544872 5_2:+62744723 None:intergenic
AAATATATGCAATGAGTCAA+AGG 0.545306 5_2:+62741882 None:intergenic
CTAGCACTTGAAGATATTGA+CGG 0.546652 5_2:-62748886 Msa0780700:CDS
CTCTACTAGTAATCATGCTA+AGG 0.546718 5_2:-62744841 Msa0780700:CDS
CCCATAACAAGGGCAGCACT+TGG 0.547020 5_2:+62749221 None:intergenic
TAGGAATAGGATGGAAGTCA+TGG 0.550340 5_2:-62750071 Msa0780700:CDS
GTGATAGAGAGAGAAAGAGA+AGG 0.550722 5_2:+62751882 None:intergenic
TAACAGAGGCCGTAAGAGCA+AGG 0.552011 5_2:+62745788 None:intergenic
ACAGAATCTTATCGTTCCAT+GGG 0.553032 5_2:-62744702 Msa0780700:CDS
CCTTTGGAAGATATGAAAAG+TGG 0.553169 5_2:+62750276 None:intergenic
TGGTTTGTAAACCATGTCTT+GGG 0.553794 5_2:+62741989 None:intergenic
GTACCCTTCCTCAGAGAGGT+GGG 0.555947 5_2:-62749518 Msa0780700:CDS
AGACATGCTTGTCGATGCCT+CGG 0.556250 5_2:+62742515 None:intergenic
TCTATAAATGGCTTCCGAGA+TGG 0.557311 5_2:+62742564 None:intergenic
CAATTTACAGCATGTTCTAA+GGG 0.558033 5_2:-62747175 Msa0780700:intron
GCCGAGGAAGTCACCGTCAG+TGG 0.558441 5_2:-62744051 Msa0780700:CDS
TTGCATACTGTAATCATGAA+AGG 0.559093 5_2:-62743027 Msa0780700:CDS
TTCGTATATTACTTTAGGGG+AGG 0.562912 5_2:-62741709 Msa0780700:three_prime_UTR
GGATAAAAGCAAGCAAAGAA+AGG 0.563479 5_2:-62744772 Msa0780700:CDS
TTCATGATTACAGTATGCAA+GGG 0.566846 5_2:+62743030 None:intergenic
TTACAGTATTATTTCCAGAC+GGG 0.567974 5_2:-62749334 Msa0780700:CDS
TCCACTGACGGTGACTTCCT+CGG 0.569750 5_2:+62744050 None:intergenic
TTCACGTGGGATGGATTCAA+AGG 0.570384 5_2:-62743432 Msa0780700:intron
AACAGAGGCCGTAAGAGCAA+GGG 0.572474 5_2:+62745789 None:intergenic
AACTACTCTCTGGTAGAAGT+AGG 0.574747 5_2:-62751829 Msa0780700:five_prime_UTR
TTCCACTTCAAGGGCAGCAG+AGG 0.574764 5_2:-62742454 Msa0780700:intron
CTTACAGTATTATTTCCAGA+CGG 0.575678 5_2:-62749335 Msa0780700:CDS
ATTCTCGAGTTGAAAACAGC+GGG 0.576151 5_2:-62745503 Msa0780700:CDS
CAAATCGACGTTTGTTACAG+AGG 0.577379 5_2:-62745981 Msa0780700:intron
GAAGCTGGAACTGGAGAGGA+GGG 0.578183 5_2:+62747147 None:intergenic
TGCACTTGCTGAAGCTGATG+TGG 0.578506 5_2:-62743301 Msa0780700:CDS
GGTTGATTCTTCTGGAGAAG+AGG 0.579072 5_2:-62744024 Msa0780700:CDS
TTTGCAGGCTTGCTATTCAG+AGG 0.579595 5_2:-62743847 Msa0780700:intron
AAAGACAAAGGCTGAGCTAG+AGG 0.580232 5_2:-62743328 Msa0780700:intron
ACAAACCAACATCACCATCA+TGG 0.581238 5_2:-62741974 Msa0780700:CDS
GTTAGCTGGAGAATGTGAGC+TGG 0.582566 5_2:-62745769 Msa0780700:CDS
TGAAGATAAAATCTCACCCA+TGG 0.584703 5_2:+62744686 None:intergenic
CTTAGCATGATTACTAGTAG+AGG 0.585994 5_2:+62744842 None:intergenic
ATACAACTGATTCTATTGAC+GGG 0.586215 5_2:-62749175 Msa0780700:CDS
CTCATACTCCTCCAACAAAG+TGG 0.587009 5_2:+62745662 None:intergenic
TTATTTCCAGACGGGCGCGA+TGG 0.589217 5_2:-62749326 Msa0780700:CDS
TTTGCAACATAGAATTGCAA+AGG 0.589536 5_2:-62743804 Msa0780700:CDS
TGGGGAAGTAAACATGACGC+TGG 0.589701 5_2:-62749499 Msa0780700:CDS
CTTAGGTTTCTAGAGAAGCA+TGG 0.590790 5_2:-62748838 Msa0780700:intron
TGTGGCTAGGTTGAAGCAAA+AGG 0.591297 5_2:-62743283 Msa0780700:CDS
GAACGATAAGATTCTGTGGA+AGG 0.591702 5_2:+62744708 None:intergenic
AATTTCACCCCAGAAGGGAA+GGG 0.592716 5_2:-62751673 Msa0780700:five_prime_UTR
ATGATGGGTTGATTGGATTG+GGG 0.593271 5_2:-62751471 Msa0780700:five_prime_UTR
CACAAAATTTCACCCCAGAA+GGG 0.593866 5_2:-62751678 Msa0780700:five_prime_UTR
ATGGTAGTAGGCAGCCATCT+CGG 0.596802 5_2:-62742578 Msa0780700:CDS
TGAAGCTGGAACTGGAGAGG+AGG 0.598692 5_2:+62747146 None:intergenic
GCAACATAGAATTGCAAAGG+AGG 0.599914 5_2:-62743801 Msa0780700:intron
AAGAACAGTTGCAAGCTGAG+AGG 0.599976 5_2:-62743511 Msa0780700:CDS
GAATCAACCGATTCCACTGA+CGG 0.600361 5_2:+62744038 None:intergenic
GGGGAAGTAAACATGACGCT+GGG 0.605107 5_2:-62749498 Msa0780700:CDS
GTTATTTGCGGCATTAGCAG+CGG 0.606905 5_2:+62745701 None:intergenic
GGTTCATCAGTGATATATTG+TGG 0.608460 5_2:-62751348 Msa0780700:five_prime_UTR
AGTACCCTTCCTCAGAGAGG+TGG 0.608505 5_2:-62749519 Msa0780700:CDS
CTTTGGAAGATATGAAAAGT+GGG 0.609808 5_2:+62750277 None:intergenic
TTGGCTGGTCAACTCCATGA+TGG 0.613547 5_2:+62741960 None:intergenic
GGACAGATTTCCAATTCACG+TGG 0.614074 5_2:-62743446 Msa0780700:CDS
GCGGCAATCTGCAGACGTTG+AGG 0.614553 5_2:-62747822 Msa0780700:CDS
TCACAGGTAAATGGTTGCCA+GGG 0.614783 5_2:+62744658 None:intergenic
TCTGATTGGAGAAATATCAA+AGG 0.616260 5_2:-62742621 Msa0780700:CDS
TTGACTTAAACAATTCAGGA+AGG 0.617215 5_2:-62749470 Msa0780700:intron
TACCCTTCCTCAGAGAGGTG+GGG 0.617407 5_2:-62749517 Msa0780700:CDS
TATTTCGTATATTACTTTAG+GGG 0.617661 5_2:-62741712 Msa0780700:three_prime_UTR
CACTTGAAGATATTGACGGA+GGG 0.617722 5_2:-62748882 Msa0780700:CDS
GATGGAAGTCATGGAAGAAG+CGG 0.623086 5_2:-62750062 Msa0780700:CDS
TGAACAAAACAACTTCAATG+AGG 0.624376 5_2:-62741625 Msa0780700:three_prime_UTR
GGAAGTCATGGAAGAAGCGG+TGG 0.627664 5_2:-62750059 Msa0780700:CDS
TCTGCTGCCCTTGAAGTGGA+AGG 0.630019 5_2:+62742456 None:intergenic
CATGGAACGATAAGATTCTG+TGG 0.631344 5_2:+62744704 None:intergenic
TCCTGATAACCATCTGTCTG+AGG 0.631979 5_2:-62744793 Msa0780700:CDS
TTCCCCACCTCTCTGAGGAA+GGG 0.632870 5_2:+62749515 None:intergenic
GGTATAACCCTTCCCTTCTG+GGG 0.638161 5_2:+62751666 None:intergenic
AGCATGTCTGTAGATGAGCT+TGG 0.639210 5_2:-62742501 Msa0780700:CDS
GTAATCATGAAAGGAAACAA+AGG 0.640261 5_2:-62743018 Msa0780700:CDS
GGAAAATTAAGTGAAAGTAG+TGG 0.642200 5_2:-62745369 Msa0780700:CDS
GCATGAAGCTGGAACTGGAG+AGG 0.644232 5_2:+62747143 None:intergenic
GTTCGTATTCTTGAACTCTG+CGG 0.646798 5_2:+62747792 None:intergenic
CAAGCCAAAATTCTTCACCA+AGG 0.649529 5_2:+62741918 None:intergenic
TTTACTTCCCCACCTCTCTG+AGG 0.651426 5_2:+62749510 None:intergenic
GCCCTTGTTATGGGACACAA+TGG 0.652712 5_2:-62749212 Msa0780700:CDS
TCCATTGTGTCCCATAACAA+GGG 0.660482 5_2:+62749211 None:intergenic
AATGTTGAAGATGCTACAGA+CGG 0.662960 5_2:+62742110 None:intergenic
AGCTGGAGAATGTGAGCTGG+AGG 0.672550 5_2:-62745766 Msa0780700:CDS
GAAGTAAACATGACGCTGGG+CGG 0.674404 5_2:-62749495 Msa0780700:CDS
GCACTTGAAGATATTGACGG+AGG 0.677854 5_2:-62748883 Msa0780700:CDS
ACAACCGGTAAAGCTAGTAG+TGG 0.679296 5_2:-62744606 Msa0780700:CDS
ACTAAGCGGTCAACATTCTG+GGG 0.682653 5_2:-62744570 Msa0780700:CDS
TCACATTCTCCAGCTAACAG+AGG 0.688971 5_2:+62745774 None:intergenic
GACAGATTTCCAATTCACGT+GGG 0.690788 5_2:-62743445 Msa0780700:CDS
ACAAGAAATTGATCGCAAGG+AGG 0.690891 5_2:-62746052 Msa0780700:intron
TAGAGTACCCTTCCTCAGAG+AGG 0.693531 5_2:-62749522 Msa0780700:CDS
TGAAAGGAAACAAAGGACTG+AGG 0.696082 5_2:-62743011 Msa0780700:intron
TCGAGCGTTCACCCTTAAGG+CGG 0.704532 5_2:-62749303 Msa0780700:CDS
CATACCGTATTAGAAGCCCC+AGG 0.715794 5_2:+62751287 None:intergenic
GCACAAGCTTTAGTACTAAG+CGG 0.720132 5_2:-62744584 Msa0780700:CDS
TATGGTTCAGTTACAGACGT+AGG 0.726061 5_2:-62743216 Msa0780700:CDS
AGAGTTCAAGAATACGAACA+AGG 0.726125 5_2:-62747788 Msa0780700:intron
GATTCTCGAGTTGAAAACAG+CGG 0.735165 5_2:-62745504 Msa0780700:CDS
CTAAAGTTGAAGGAATACTG+CGG 0.741831 5_2:-62747841 Msa0780700:CDS
GATGCTGATCGTGTTCACAG+TGG 0.764138 5_2:-62745390 Msa0780700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAAAATTATTTAATA+TGG - chr5_2:62746162-62746181 Msa0780700:intron 0.0%
!!! ATATTCTATTTTTAGATAAT+TGG - chr5_2:62742221-62742240 Msa0780700:intron 10.0%
!!! TATTCTATTTTTAGATAATT+GGG - chr5_2:62742222-62742241 Msa0780700:intron 10.0%
!!! TTTTATTTTTATTTTTTGTG+GGG - chr5_2:62743993-62744012 Msa0780700:intron 10.0%
!! AATGAAAATAATTATAACAT+TGG + chr5_2:62745798-62745817 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACAGAA+TGG - chr5_2:62750467-62750486 Msa0780700:intron 10.0%
!! AAAAGATTAAAAAAAAAAAC+TGG + chr5_2:62751694-62751713 None:intergenic 10.0%
!! CTTAATCAAAAAATTAGAAA+TGG + chr5_2:62742198-62742217 None:intergenic 15.0%
!!! ATGAAGTTTTGATTTTTTAA+AGG - chr5_2:62742260-62742279 Msa0780700:intron 15.0%
!!! TGAAGTTTTGATTTTTTAAA+GGG - chr5_2:62742261-62742280 Msa0780700:intron 15.0%
!!! AATTAGGATTTTTATTACAT+AGG - chr5_2:62742464-62742483 Msa0780700:CDS 15.0%
!! AAATGTATTTGATACAAATT+TGG + chr5_2:62742686-62742705 None:intergenic 15.0%
!! TATTTACTAAAGGATAAAAT+TGG - chr5_2:62743016-62743035 Msa0780700:CDS 15.0%
!!! TAGTTTTTATTTACTTCTTT+TGG - chr5_2:62743050-62743069 Msa0780700:CDS 15.0%
!! AACAAAAGCAATATTATTAT+TGG + chr5_2:62744359-62744378 None:intergenic 15.0%
!!! GTTTTTAAGAAATTATTCAT+TGG - chr5_2:62744376-62744395 Msa0780700:intron 15.0%
!! AAAAGTGAAATGAAATATAA+AGG + chr5_2:62744642-62744661 None:intergenic 15.0%
!! TAAAAATGATTGAATCAAAT+GGG - chr5_2:62744757-62744776 Msa0780700:CDS 15.0%
!!! TTATACTTGAATTTAGTTTA+TGG - chr5_2:62745864-62745883 Msa0780700:CDS 15.0%
!!! CATATGATTTTAAAAACAAA+TGG - chr5_2:62746375-62746394 Msa0780700:intron 15.0%
!! AATATTGATGTAAAAGAAAA+TGG - chr5_2:62747971-62747990 Msa0780700:intron 15.0%
!! AATTTAAATATGCTTACTTA+GGG - chr5_2:62749071-62749090 Msa0780700:intron 15.0%
!!! TTTTGTGACTTTTTAAAAAA+AGG - chr5_2:62749112-62749131 Msa0780700:intron 15.0%
!! TTAGAGTTAAGAAATATTAT+TGG - chr5_2:62749479-62749498 Msa0780700:CDS 15.0%
!!! TAACTGATTTTTAACTTTAA+AGG - chr5_2:62749881-62749900 Msa0780700:intron 15.0%
!!! TTACTTGTTAATATTTACAA+AGG + chr5_2:62750552-62750571 None:intergenic 15.0%
!! ATTATTTACAATTTACTTTC+AGG + chr5_2:62750590-62750609 None:intergenic 15.0%
!!! TTTTAACGAGTTTATTATAA+TGG - chr5_2:62750609-62750628 Msa0780700:intron 15.0%
!!! AATGATTGTAATAGATTTTA+AGG + chr5_2:62751023-62751042 None:intergenic 15.0%
!!! ATTATTATGAAGTTGTTATT+TGG + chr5_2:62751489-62751508 None:intergenic 15.0%
!! AGGAAAAAATAGAAATTAAT+TGG + chr5_2:62751619-62751638 None:intergenic 15.0%
!! TTTATTTCGTATATTACTTT+AGG - chr5_2:62751713-62751732 Msa0780700:five_prime_UTR 15.0%
!! TTATTTCGTATATTACTTTA+GGG - chr5_2:62751714-62751733 Msa0780700:five_prime_UTR 15.0%
!! TAATGTGAAAAAACAAAGAT+GGG + chr5_2:62741638-62741657 None:intergenic 20.0%
!! TTAATGTGAAAAAACAAAGA+TGG + chr5_2:62741639-62741658 None:intergenic 20.0%
!!! TTTTGAGAAAAAACACATAA+GGG + chr5_2:62741785-62741804 None:intergenic 20.0%
!!! TTATGTGTTTTTTCTCAAAA+GGG - chr5_2:62741785-62741804 Msa0780700:three_prime_UTR 20.0%
!!! TTTAGTGTTTGGAAATTTTA+AGG - chr5_2:62741993-62742012 Msa0780700:CDS 20.0%
!!! TTTAAGGATTTTTTTGAATG+TGG - chr5_2:62742009-62742028 Msa0780700:CDS 20.0%
!!! GAAGTTTTGATTTTTTAAAG+GGG - chr5_2:62742262-62742281 Msa0780700:intron 20.0%
!!! GTTGATTTATTGAATGAATT+GGG - chr5_2:62742284-62742303 Msa0780700:intron 20.0%
!! TATAAACTTAACAAACAGAT+TGG - chr5_2:62742769-62742788 Msa0780700:intron 20.0%
!! ATACTAATAGCATCAAATAA+GGG + chr5_2:62742999-62743018 None:intergenic 20.0%
!! AATACTAATAGCATCAAATA+AGG + chr5_2:62743000-62743019 None:intergenic 20.0%
!! ATGCTATTAGTATTTACTAA+AGG - chr5_2:62743006-62743025 Msa0780700:intron 20.0%
!! CTTGATATATTAACATTCTA+TGG - chr5_2:62743610-62743629 Msa0780700:intron 20.0%
!! TCAAATAAGTCTATTCAATT+AGG - chr5_2:62743731-62743750 Msa0780700:intron 20.0%
!! ATAGAAAAAATGACTTCTAA+AGG + chr5_2:62744451-62744470 None:intergenic 20.0%
!!! CAAATTTTAGTAGTTATTAC+CGG - chr5_2:62744676-62744695 Msa0780700:CDS 20.0%
!! CTAAAAATGATTGAATCAAA+TGG - chr5_2:62744756-62744775 Msa0780700:CDS 20.0%
!! AAAAATGATTGAATCAAATG+GGG - chr5_2:62744758-62744777 Msa0780700:CDS 20.0%
!! ATAACTTTATATCGAAACAT+TGG - chr5_2:62745433-62745452 Msa0780700:CDS 20.0%
!! TAACTTTATATCGAAACATT+GGG - chr5_2:62745434-62745453 Msa0780700:CDS 20.0%
!!! GACTTGTTTTTTATATTTTC+AGG - chr5_2:62745912-62745931 Msa0780700:intron 20.0%
!!! GTTTTTTATATTTTCAGGAA+AGG - chr5_2:62745917-62745936 Msa0780700:intron 20.0%
!!! TTTGTTTTTGCTCTTTTTAT+TGG - chr5_2:62746434-62746453 Msa0780700:intron 20.0%
!!! TCTTTTTATTGGTTTTTGTT+CGG - chr5_2:62746445-62746464 Msa0780700:intron 20.0%
!! CTTGAAAAATGTTCATAATT+GGG - chr5_2:62746541-62746560 Msa0780700:intron 20.0%
!! TTGAAAAATGTTCATAATTG+GGG - chr5_2:62746542-62746561 Msa0780700:intron 20.0%
!! AAACTGTCTTAATTAGTTAT+AGG - chr5_2:62746901-62746920 Msa0780700:intron 20.0%
!! ATTAATTCCAATATGTTTGT+AGG - chr5_2:62746931-62746950 Msa0780700:intron 20.0%
!! ACAAAAAATTAAGGAAAAGA+GGG + chr5_2:62748518-62748537 None:intergenic 20.0%
!! CAATTTAAATATGCTTACTT+AGG - chr5_2:62749070-62749089 Msa0780700:intron 20.0%
!!! TAACTGTTTTATTTTCGTTA+TGG - chr5_2:62749247-62749266 Msa0780700:CDS 20.0%
!! AAACCTTGTGAATTTATATA+AGG - chr5_2:62750328-62750347 Msa0780700:intron 20.0%
!! TAACCTTATATAAATTCACA+AGG + chr5_2:62750334-62750353 None:intergenic 20.0%
!! TTGTTAATATTTACAAAGGT+CGG + chr5_2:62750548-62750567 None:intergenic 20.0%
!!! AATATTTTCATGTTAAGATG+AGG + chr5_2:62750635-62750654 None:intergenic 20.0%
!!! TATATTCATTTATGGTTTTG+AGG - chr5_2:62750720-62750739 Msa0780700:intron 20.0%
!!! ATATTCATTTATGGTTTTGA+GGG - chr5_2:62750721-62750740 Msa0780700:intron 20.0%
!!! TTCTATTTTTTCCTCTATTT+TGG - chr5_2:62751625-62751644 Msa0780700:five_prime_UTR 20.0%
!! TATTTCGTATATTACTTTAG+GGG - chr5_2:62751715-62751734 Msa0780700:five_prime_UTR 20.0%
!! ATGTTATGTTAATAGATAGA+TGG - chr5_2:62751765-62751784 Msa0780700:five_prime_UTR 20.0%
!! TGTTATGTTAATAGATAGAT+GGG - chr5_2:62751766-62751785 Msa0780700:five_prime_UTR 20.0%
!!! AGGAAATATTAGTAACATTT+TGG - chr5_2:62751822-62751841 Msa0780700:five_prime_UTR 20.0%
!!! CTTTTGAGAAAAAACACATA+AGG + chr5_2:62741786-62741805 None:intergenic 25.0%
!!! CTTATGTGTTTTTTCTCAAA+AGG - chr5_2:62741784-62741803 Msa0780700:three_prime_UTR 25.0%
!!! TGAGATTTTTCTTGATTTGA+AGG - chr5_2:62741819-62741838 Msa0780700:three_prime_UTR 25.0%
!!! GAGATTTTTCTTGATTTGAA+GGG - chr5_2:62741820-62741839 Msa0780700:three_prime_UTR 25.0%
! TGATGTAAACATATAGTACT+TGG - chr5_2:62741849-62741868 Msa0780700:three_prime_UTR 25.0%
!!! GATTTTGATTTTGTTGATGT+TGG - chr5_2:62741908-62741927 Msa0780700:three_prime_UTR 25.0%
!! AATACGGTATGTTTTTCTTT+TGG - chr5_2:62742152-62742171 Msa0780700:intron 25.0%
!! GGTTGATTTATTGAATGAAT+TGG - chr5_2:62742283-62742302 Msa0780700:intron 25.0%
!!! AACTTGGTCTTGTTAAAATT+AGG - chr5_2:62742448-62742467 Msa0780700:intron 25.0%
! CAATGAAATTGTGGTAAATA+TGG + chr5_2:62742554-62742573 None:intergenic 25.0%
! ATCATTACGTCAAATGTATT+TGG - chr5_2:62742659-62742678 Msa0780700:intron 25.0%
!! CTTTTTGCGTATATTTAAGA+CGG - chr5_2:62742708-62742727 Msa0780700:intron 25.0%
!!! TTTTTGCGTATATTTAAGAC+GGG - chr5_2:62742709-62742728 Msa0780700:intron 25.0%
! TATCTTCATTCTTCAATAAG+AGG - chr5_2:62742885-62742904 Msa0780700:intron 25.0%
! AAAGCAAGTAAAATCATAGT+GGG - chr5_2:62742908-62742927 Msa0780700:intron 25.0%
! TACTAATAGCATCAAATAAG+GGG + chr5_2:62742998-62743017 None:intergenic 25.0%
!! ACTTCTTTTGGTATGTATTT+TGG - chr5_2:62743062-62743081 Msa0780700:CDS 25.0%
! TTAAAACCTTGTATATACAG+GGG + chr5_2:62743195-62743214 None:intergenic 25.0%
! CTTAAAACCTTGTATATACA+GGG + chr5_2:62743196-62743215 None:intergenic 25.0%
! ACTTAAAACCTTGTATATAC+AGG + chr5_2:62743197-62743216 None:intergenic 25.0%
!!! ATATACAAGGTTTTAAGTCA+TGG - chr5_2:62743199-62743218 Msa0780700:CDS 25.0%
! TTCTGTCAATGTTATGATAT+AGG - chr5_2:62743308-62743327 Msa0780700:CDS 25.0%
! AAGAGCTTCAAAAAACAAAT+CGG + chr5_2:62743648-62743667 None:intergenic 25.0%
! TTACTCAAATACTTCTGAAT+CGG - chr5_2:62743841-62743860 Msa0780700:CDS 25.0%
!!! TTGATGATCTGTTTTGAAAT+TGG - chr5_2:62744025-62744044 Msa0780700:CDS 25.0%
!!! TGATGATCTGTTTTGAAATT+GGG - chr5_2:62744026-62744045 Msa0780700:CDS 25.0%
! ATAAAGGCAATACTTAATAC+AGG + chr5_2:62744626-62744645 None:intergenic 25.0%
! CAGATGAAATAAAACTTTAC+CGG + chr5_2:62744698-62744717 None:intergenic 25.0%
! TCTGTGAGCAAAAAATTTAT+TGG - chr5_2:62744714-62744733 Msa0780700:CDS 25.0%
!! CAAAAAATTTATTGGCTAGT+AGG - chr5_2:62744722-62744741 Msa0780700:CDS 25.0%
! AAAATGATTGAATCAAATGG+GGG - chr5_2:62744759-62744778 Msa0780700:CDS 25.0%
! ATTGACACAAATTTCTGAAT+TGG - chr5_2:62745008-62745027 Msa0780700:intron 25.0%
! TACAAAACATTGTCAAATAG+TGG - chr5_2:62745120-62745139 Msa0780700:intron 25.0%
! ACAAAACATTGTCAAATAGT+GGG - chr5_2:62745121-62745140 Msa0780700:intron 25.0%
! TTATACAATTTAAGCCAAAG+CGG - chr5_2:62745259-62745278 Msa0780700:intron 25.0%
! AACTTTATATCGAAACATTG+GGG - chr5_2:62745435-62745454 Msa0780700:CDS 25.0%
!!! TGTATAAAACATGTTTTTGC+AGG - chr5_2:62745561-62745580 Msa0780700:intron 25.0%
! TCCATATTACAAACAAAGTA+TGG - chr5_2:62745737-62745756 Msa0780700:CDS 25.0%
!! TCCATACTTTGTTTGTAATA+TGG + chr5_2:62745741-62745760 None:intergenic 25.0%
!! AAGTTTTCCTATTATCAAGA+GGG + chr5_2:62746024-62746043 None:intergenic 25.0%
!! TAAGTTTTCCTATTATCAAG+AGG + chr5_2:62746025-62746044 None:intergenic 25.0%
! AAAACATAATTGAAAAGGAC+AGG + chr5_2:62746082-62746101 None:intergenic 25.0%
! TTAAGCTGATAAAATATTGC+AGG + chr5_2:62746105-62746124 None:intergenic 25.0%
! CATTAACTAACTAGCTAATA+GGG + chr5_2:62746491-62746510 None:intergenic 25.0%
! ACATTAACTAACTAGCTAAT+AGG + chr5_2:62746492-62746511 None:intergenic 25.0%
! GCTTGAAAAATGTTCATAAT+TGG - chr5_2:62746540-62746559 Msa0780700:intron 25.0%
! TGAAAAATGTTCATAATTGG+GGG - chr5_2:62746543-62746562 Msa0780700:intron 25.0%
!!! GAATTGTTTTTCCTATTCTT+TGG - chr5_2:62746715-62746734 Msa0780700:intron 25.0%
! TCTATATTCAACCAAAGAAT+AGG + chr5_2:62746729-62746748 None:intergenic 25.0%
! TGAAAGTCCAAAAAAACATT+TGG + chr5_2:62747180-62747199 None:intergenic 25.0%
! AATTTGACAACTGAAAGTTA+AGG + chr5_2:62747272-62747291 None:intergenic 25.0%
! ATTAGATTAAGAAGAAACTG+TGG + chr5_2:62747513-62747532 None:intergenic 25.0%
!!! TCTTTTGATTAATTGCTTTC+TGG - chr5_2:62747826-62747845 Msa0780700:CDS 25.0%
!!! ATTAAGTTGTTTTCCAAACA+GGG + chr5_2:62748182-62748201 None:intergenic 25.0%
!!! AATTAAGTTGTTTTCCAAAC+AGG + chr5_2:62748183-62748202 None:intergenic 25.0%
! CACAAAAAATTAAGGAAAAG+AGG + chr5_2:62748519-62748538 None:intergenic 25.0%
! AACTACTCAAACTTATTTGA+AGG + chr5_2:62749206-62749225 None:intergenic 25.0%
! TATAAGATGCCAAATACTTA+AGG + chr5_2:62749337-62749356 None:intergenic 25.0%
! CTCAAGGTAAAAATACAAAA+TGG + chr5_2:62749534-62749553 None:intergenic 25.0%
! AACAATTCAAATAGAGCAAT+TGG + chr5_2:62749844-62749863 None:intergenic 25.0%
! TACTATGAAAGCAATCAAAA+GGG + chr5_2:62750051-62750070 None:intergenic 25.0%
! ATCTACTTATGTAAAGACAA+AGG - chr5_2:62750087-62750106 Msa0780700:intron 25.0%
! CAAAAAAGAACAAACAGTAA+AGG + chr5_2:62750670-62750689 None:intergenic 25.0%
! AATATAACAAGCACAAGAAA+TGG + chr5_2:62750706-62750725 None:intergenic 25.0%
!!! GTGCTTGTTATATTCATTTA+TGG - chr5_2:62750712-62750731 Msa0780700:intron 25.0%
! AAATATCAAAGGACAAGTAT+TGG - chr5_2:62750817-62750836 Msa0780700:intron 25.0%
!! ATCAAACTACTACTATTTTC+CGG - chr5_2:62751171-62751190 Msa0780700:intron 25.0%
! AACTAATATAGTAGCAATCA+TGG - chr5_2:62751263-62751282 Msa0780700:intron 25.0%
! ACTAATATAGTAGCAATCAT+GGG - chr5_2:62751264-62751283 Msa0780700:intron 25.0%
! AACAACTTCATAATAATCCT+TGG - chr5_2:62751492-62751511 Msa0780700:five_prime_UTR 25.0%
! AAATATATGCAATGAGTCAA+AGG + chr5_2:62751548-62751567 None:intergenic 25.0%
! ATTTGTATCCTTATCATTTG+TGG - chr5_2:62751564-62751583 Msa0780700:five_prime_UTR 25.0%
! TTCACATAGATTGAAATTAG+TGG + chr5_2:62751870-62751889 None:intergenic 25.0%
!!! TCTGATTGTGTTTTTGGATT+AGG + chr5_2:62741695-62741714 None:intergenic 30.0%
TAATCCAAAAACACAATCAG+AGG - chr5_2:62741694-62741713 Msa0780700:three_prime_UTR 30.0%
! TTTTCCTCTGATTGTGTTTT+TGG + chr5_2:62741701-62741720 None:intergenic 30.0%
AAAACTGCGAGAAAATCAAT+TGG - chr5_2:62741719-62741738 Msa0780700:three_prime_UTR 30.0%
!!! AGGATTGGTTTTTTAGTGTT+TGG - chr5_2:62741982-62742001 Msa0780700:CDS 30.0%
!! TTTTGAATGTGGTGTTTTTG+AGG - chr5_2:62742020-62742039 Msa0780700:CDS 30.0%
!! TTGATGGTGTTTGAAATTAG+TGG - chr5_2:62742043-62742062 Msa0780700:CDS 30.0%
! GTGTTTGAAATTAGTGGTAA+TGG - chr5_2:62742049-62742068 Msa0780700:CDS 30.0%
!! TTGAATGAATTGGGAGTATT+TGG - chr5_2:62742293-62742312 Msa0780700:intron 30.0%
! AATTTCCTTGTTTAGTGTTG+AGG - chr5_2:62742393-62742412 Msa0780700:intron 30.0%
TTGAAGCTTCAATGAAATTG+TGG + chr5_2:62742563-62742582 None:intergenic 30.0%
!!! GTGTTTTTTCACCTTGATTT+TGG - chr5_2:62742602-62742621 Msa0780700:CDS 30.0%
!! TAAGCATACGTTTATTTCTG+CGG + chr5_2:62742636-62742655 None:intergenic 30.0%
GAAAGCAAGTAAAATCATAG+TGG - chr5_2:62742907-62742926 Msa0780700:intron 30.0%
!!! TATGTATTTTGGTCATAGTC+CGG - chr5_2:62743073-62743092 Msa0780700:intron 30.0%
TGCAAAATAGTAATATGCGT+TGG + chr5_2:62743115-62743134 None:intergenic 30.0%
! AACGCATATTACTATTTTGC+AGG - chr5_2:62743114-62743133 Msa0780700:intron 30.0%
! ATTTTGCAGGTTTTCAAAAG+TGG - chr5_2:62743127-62743146 Msa0780700:intron 30.0%
! CTTTGGAAGATATGAAAAGT+GGG + chr5_2:62743153-62743172 None:intergenic 30.0%
TAAAACCTTGTATATACAGG+GGG + chr5_2:62743194-62743213 None:intergenic 30.0%
TTAAGTCATGGTTATAGTTG+TGG - chr5_2:62743211-62743230 Msa0780700:CDS 30.0%
! TCAATGCTTTCCTATTTTGT+AGG - chr5_2:62743337-62743356 Msa0780700:intron 30.0%
! CTTTCCTATTTTGTAGGAAT+AGG - chr5_2:62743343-62743362 Msa0780700:intron 30.0%
! GGTTTTCTTCAAAAATGATC+CGG - chr5_2:62743414-62743433 Msa0780700:intron 30.0%
AAGATTTGAGTGATACTAAC+CGG + chr5_2:62743436-62743455 None:intergenic 30.0%
TGATTCTTAAGATCTTAGCT+TGG - chr5_2:62743461-62743480 Msa0780700:CDS 30.0%
ACTCTCTAATTAAACAGACA+TGG - chr5_2:62743528-62743547 Msa0780700:intron 30.0%
CTCTCTAATTAAACAGACAT+GGG - chr5_2:62743529-62743548 Msa0780700:intron 30.0%
ATAGTCACATCTTACACTAA+GGG + chr5_2:62743757-62743776 None:intergenic 30.0%
TATAGTCACATCTTACACTA+AGG + chr5_2:62743758-62743777 None:intergenic 30.0%
AGTGCAGAACTTTAAATGAT+CGG - chr5_2:62743777-62743796 Msa0780700:intron 30.0%
TATGAACAGTTCTGCTAATT+TGG - chr5_2:62743806-62743825 Msa0780700:CDS 30.0%
GAAAATTCAGTCATAGATGA+TGG + chr5_2:62743872-62743891 None:intergenic 30.0%
!! GGTATTGACTTAAACAATTC+AGG - chr5_2:62743953-62743972 Msa0780700:intron 30.0%
TTGACTTAAACAATTCAGGA+AGG - chr5_2:62743957-62743976 Msa0780700:intron 30.0%
CTTACAGTATTATTTCCAGA+CGG - chr5_2:62744092-62744111 Msa0780700:intron 30.0%
TTACAGTATTATTTCCAGAC+GGG - chr5_2:62744093-62744112 Msa0780700:intron 30.0%
! GATACAACTGATTCTATTGA+CGG - chr5_2:62744251-62744270 Msa0780700:intron 30.0%
! ATACAACTGATTCTATTGAC+GGG - chr5_2:62744252-62744271 Msa0780700:intron 30.0%
!!! AGAGCTTTTTCAAGAAAAGA+TGG + chr5_2:62744571-62744590 None:intergenic 30.0%
! CTTTTCTTGAAAAAGCTCTT+AGG - chr5_2:62744572-62744591 Msa0780700:CDS 30.0%
! AAAATTTATTGGCTAGTAGG+CGG - chr5_2:62744725-62744744 Msa0780700:CDS 30.0%
AAATGATTGAATCAAATGGG+GGG - chr5_2:62744760-62744779 Msa0780700:CDS 30.0%
TAGTAAGATCATCATGTAAG+AGG + chr5_2:62744989-62745008 None:intergenic 30.0%
ACTATAGCACTATTATGTAG+TGG - chr5_2:62745153-62745172 Msa0780700:intron 30.0%
ATATCCATTACTGAGATTCA+AGG + chr5_2:62745404-62745423 None:intergenic 30.0%
! GTATTCTAACTTTTACACTG+AGG + chr5_2:62745499-62745518 None:intergenic 30.0%
TAAGCAGTATTTATGCATTG+CGG + chr5_2:62745540-62745559 None:intergenic 30.0%
TGTAATATGGAAAGCAAGAA+AGG + chr5_2:62745728-62745747 None:intergenic 30.0%
! TTTCATTTTCGAACCTTCTA+TGG - chr5_2:62745811-62745830 Msa0780700:CDS 30.0%
!!! GATTTTTTTGCGTGAAACTT+AGG - chr5_2:62745886-62745905 Msa0780700:intron 30.0%
! AGTTTTCCTATTATCAAGAG+GGG + chr5_2:62746023-62746042 None:intergenic 30.0%
GCAGGAAAACATAATTGAAA+AGG + chr5_2:62746087-62746106 None:intergenic 30.0%
GAACTCAAGAAAAGTAATCA+AGG + chr5_2:62746190-62746209 None:intergenic 30.0%
! TACTTTTCTTGAGTTCTGTT+AGG - chr5_2:62746194-62746213 Msa0780700:intron 30.0%
TTATTGAATGACTGTCAACT+TGG - chr5_2:62746228-62746247 Msa0780700:intron 30.0%
TCAATTTACAGCATGTTCTA+AGG - chr5_2:62746251-62746270 Msa0780700:intron 30.0%
CAATTTACAGCATGTTCTAA+GGG - chr5_2:62746252-62746271 Msa0780700:intron 30.0%
GAAAAATGTTCATAATTGGG+GGG - chr5_2:62746544-62746563 Msa0780700:intron 30.0%
AAAAATGTTCATAATTGGGG+GGG - chr5_2:62746545-62746564 Msa0780700:intron 30.0%
ATATCCTATCCAAGATATGT+TGG - chr5_2:62746638-62746657 Msa0780700:intron 30.0%
TATCCTATCCAAGATATGTT+GGG - chr5_2:62746639-62746658 Msa0780700:intron 30.0%
GAATTAAGACAACCTAGATT+AGG - chr5_2:62747018-62747037 Msa0780700:intron 30.0%
TAGAATTCACAACCTAATCT+AGG + chr5_2:62747033-62747052 None:intergenic 30.0%
AGGATTTAGCAAAAAACCAA+AGG - chr5_2:62747154-62747173 Msa0780700:CDS 30.0%
TTTACAAGAAATTGATCGCA+AGG - chr5_2:62747372-62747391 Msa0780700:intron 30.0%
TCATCTTCAAAATTCTGTGA+AGG + chr5_2:62747550-62747569 None:intergenic 30.0%
AGCAATAATTACCACTTTGT+TGG - chr5_2:62747754-62747773 Msa0780700:intron 30.0%
AATAATTACCACTTTGTTGG+AGG - chr5_2:62747757-62747776 Msa0780700:intron 30.0%
TGAAACAGCAGATAGAAATT+AGG + chr5_2:62747869-62747888 None:intergenic 30.0%
!! TAATTTCTATCTGCTGTTTC+AGG - chr5_2:62747868-62747887 Msa0780700:intron 30.0%
GGAAAATTAAGTGAAAGTAG+TGG - chr5_2:62748058-62748077 Msa0780700:intron 30.0%
CAGTGATCTTTATGATTACA+AGG - chr5_2:62748090-62748109 Msa0780700:intron 30.0%
AATAAGAATACATCAGACAC+AGG + chr5_2:62748155-62748174 None:intergenic 30.0%
!! CACAAAAGTGCTTACATATT+AGG - chr5_2:62748229-62748248 Msa0780700:intron 30.0%
AATGAGCTGAAAACAGTTTA+TGG - chr5_2:62748343-62748362 Msa0780700:intron 30.0%
GAACAGAAATCGAATACTTA+GGG + chr5_2:62748460-62748479 None:intergenic 30.0%
AGAACAGAAATCGAATACTT+AGG + chr5_2:62748461-62748480 None:intergenic 30.0%
! AAAGGGCACACAAAAAATTA+AGG + chr5_2:62748527-62748546 None:intergenic 30.0%
CAAGGTTGTTAGAAAGTTAA+CGG + chr5_2:62748913-62748932 None:intergenic 30.0%
TAACTTTCTAACAACCTTGT+AGG - chr5_2:62748914-62748933 Msa0780700:CDS 30.0%
! ATGCGAGTTGTTATTAGATT+TGG - chr5_2:62748965-62748984 Msa0780700:intron 30.0%
! TGCGAGTTGTTATTAGATTT+GGG - chr5_2:62748966-62748985 Msa0780700:intron 30.0%
!!! CTTTGAACTGATTTTTTCCT+TGG - chr5_2:62749440-62749459 Msa0780700:intron 30.0%
ACAAGAATCACATTTAACCA+AGG + chr5_2:62749460-62749479 None:intergenic 30.0%
ACTATGTTAATGCTTTCTCA+AGG + chr5_2:62749550-62749569 None:intergenic 30.0%
! ATAGTACTTTTGATGTTTGC+AGG - chr5_2:62749565-62749584 Msa0780700:intron 30.0%
TTTGCAACATAGAATTGCAA+AGG - chr5_2:62749623-62749642 Msa0780700:intron 30.0%
AACATCAGCATTATGTGATA+TGG + chr5_2:62749679-62749698 None:intergenic 30.0%
! TGCTGATGTTTTGTCTTTAA+TGG - chr5_2:62749689-62749708 Msa0780700:intron 30.0%
! TGTTTTGTCTTTAATGGAGT+TGG - chr5_2:62749695-62749714 Msa0780700:intron 30.0%
!!! GTTGGTCTTGTTTTCATTTT+AGG - chr5_2:62749713-62749732 Msa0780700:intron 30.0%
! TTGTTTTCATTTTAGGCTAG+AGG - chr5_2:62749720-62749739 Msa0780700:intron 30.0%
GTACTATGAAAGCAATCAAA+AGG + chr5_2:62750052-62750071 None:intergenic 30.0%
GCTGACATATGTTATCTTTA+AGG - chr5_2:62750278-62750297 Msa0780700:CDS 30.0%
! TGTTATCTTTAAGGATTGTG+TGG - chr5_2:62750287-62750306 Msa0780700:CDS 30.0%
TAAGGTTATCTATCATATGC+AGG - chr5_2:62750346-62750365 Msa0780700:intron 30.0%
TTCATGATTACAGTATGCAA+GGG + chr5_2:62750400-62750419 None:intergenic 30.0%
TTTCATGATTACAGTATGCA+AGG + chr5_2:62750401-62750420 None:intergenic 30.0%
TTGCATACTGTAATCATGAA+AGG - chr5_2:62750400-62750419 Msa0780700:intron 30.0%
GTAATCATGAAAGGAAACAA+AGG - chr5_2:62750409-62750428 Msa0780700:intron 30.0%
TCAATAACACAGGTAAACTT+TGG - chr5_2:62750752-62750771 Msa0780700:intron 30.0%
TCTGATTGGAGAAATATCAA+AGG - chr5_2:62750806-62750825 Msa0780700:intron 30.0%
! TCAAACTACTACTATTTTCC+GGG - chr5_2:62751172-62751191 Msa0780700:intron 30.0%
ATAACTTCAGTAACTCTACT+AGG - chr5_2:62751240-62751259 Msa0780700:intron 30.0%
! TTTCAGGTGACAGAATATAA+TGG - chr5_2:62751287-62751306 Msa0780700:intron 30.0%
! CATAACCTTGATTTGAACTA+TGG - chr5_2:62751404-62751423 Msa0780700:five_prime_UTR 30.0%
AAGAACCATAGTTCAAATCA+AGG + chr5_2:62751412-62751431 None:intergenic 30.0%
!! TTATGAAGTTGTTATTTGGC+TGG + chr5_2:62751485-62751504 None:intergenic 30.0%
! TAATCCTTGGTGAAGAATTT+TGG - chr5_2:62751505-62751524 Msa0780700:five_prime_UTR 30.0%
AAAAAAACTGGTGAACCAAA+AGG + chr5_2:62751682-62751701 None:intergenic 30.0%
TGAACAAAACAACTTCAATG+AGG - chr5_2:62751802-62751821 Msa0780700:five_prime_UTR 30.0%
TCAAACCAAAAACTACTCTC+TGG - chr5_2:62741588-62741607 Msa0780700:three_prime_UTR 35.0%
! TTCTACCAGAGAGTAGTTTT+TGG + chr5_2:62741596-62741615 None:intergenic 35.0%
!! TTTTTGGATTAGGTGAGATG+AGG + chr5_2:62741685-62741704 None:intergenic 35.0%
! TACTTGGTACTGAAAGTTTG+TGG - chr5_2:62741865-62741884 Msa0780700:three_prime_UTR 35.0%
! ACTGAAAGTTTGTGGCTTTT+TGG - chr5_2:62741873-62741892 Msa0780700:three_prime_UTR 35.0%
! GATTTTGTTGATGTTGGTGT+TGG - chr5_2:62741914-62741933 Msa0780700:three_prime_UTR 35.0%
!! TTGCTTTTGGATCTCTATGA+TGG - chr5_2:62741940-62741959 Msa0780700:three_prime_UTR 35.0%
! TGCTTTTGGATCTCTATGAT+GGG - chr5_2:62741941-62741960 Msa0780700:three_prime_UTR 35.0%
!! TATGATGGGTTGATTGGATT+GGG - chr5_2:62741955-62741974 Msa0780700:exon 35.0%
!! ATTAGTGGTAATGGCAATGT+TGG - chr5_2:62742058-62742077 Msa0780700:CDS 35.0%
GGTTCATCAGTGATATATTG+TGG - chr5_2:62742079-62742098 Msa0780700:CDS 35.0%
! ACGGTATGTTTTTCTTTTGG+AGG - chr5_2:62742155-62742174 Msa0780700:intron 35.0%
! CGGTATGTTTTTCTTTTGGA+GGG - chr5_2:62742156-62742175 Msa0780700:intron 35.0%
TTAGTTGAAAATGTTGCCCA+AGG - chr5_2:62742338-62742357 Msa0780700:intron 35.0%
! TTTAGTGTTGAGGCTAGATT+AGG - chr5_2:62742403-62742422 Msa0780700:intron 35.0%
GAATGAGCTTAGCATATGTT+TGG - chr5_2:62742494-62742513 Msa0780700:CDS 35.0%
AGCAAGTGCATGAATAAAAC+AGG + chr5_2:62742859-62742878 None:intergenic 35.0%
! CCTTTGGAAGATATGAAAAG+TGG + chr5_2:62743154-62743173 None:intergenic 35.0%
!! CCACTTTTCATATCTTCCAA+AGG - chr5_2:62743151-62743170 Msa0780700:intron 35.0%
AAAACCTTGTATATACAGGG+GGG + chr5_2:62743193-62743212 None:intergenic 35.0%
CCTATCAATCTTTGTTCTTG+CGG - chr5_2:62743237-62743256 Msa0780700:CDS 35.0%
CCATCCTATTCCTACAAAAT+AGG + chr5_2:62743350-62743369 None:intergenic 35.0%
! CCTATTTTGTAGGAATAGGA+TGG - chr5_2:62743347-62743366 Msa0780700:intron 35.0%
! TCTTAAGATCTTAGCTTGGA+TGG - chr5_2:62743465-62743484 Msa0780700:CDS 35.0%
TAAAACACATAAGCGTACAG+TGG - chr5_2:62743567-62743586 Msa0780700:intron 35.0%
!! ACAAAAGTACTTGTGCTAGT+AGG - chr5_2:62743703-62743722 Msa0780700:intron 35.0%
! CTTCAGAAGACTTGTTTGAA+TGG - chr5_2:62744150-62744169 Msa0780700:intron 35.0%
ATAACGAGTACGAACATTGA+TGG + chr5_2:62744283-62744302 None:intergenic 35.0%
ATATTTCTTCTTGTGCTTCC+AGG - chr5_2:62744469-62744488 Msa0780700:intron 35.0%
TATTTCTTCTTGTGCTTCCA+GGG - chr5_2:62744470-62744489 Msa0780700:intron 35.0%
CTAGCACTTGAAGATATTGA+CGG - chr5_2:62744541-62744560 Msa0780700:intron 35.0%
! AAATTTATTGGCTAGTAGGC+GGG - chr5_2:62744726-62744745 Msa0780700:CDS 35.0%
CAAATTTCTGAATTGGCGAT+TGG - chr5_2:62745015-62745034 Msa0780700:intron 35.0%
ACTATATTGCTATAGCGTAG+CGG - chr5_2:62745055-62745074 Msa0780700:intron 35.0%
!! TTGTCAAATAGTGGGTATAG+CGG - chr5_2:62745129-62745148 Msa0780700:intron 35.0%
TCTATTGGGTGAAATTCATG+TGG + chr5_2:62745320-62745339 None:intergenic 35.0%
ATGAATTTCACCCAATAGAG+AGG - chr5_2:62745321-62745340 Msa0780700:intron 35.0%
TGAATTTCACCCAATAGAGA+GGG - chr5_2:62745322-62745341 Msa0780700:intron 35.0%
GATTCAAGGCTATTTGCAAA+AGG + chr5_2:62745390-62745409 None:intergenic 35.0%
! ATAGCCTTGAATCTCAGTAA+TGG - chr5_2:62745397-62745416 Msa0780700:CDS 35.0%
CTTCAATCATTGAAGCTCAT+TGG - chr5_2:62745466-62745485 Msa0780700:CDS 35.0%
TTTGCAGGAACTAAAGTTGA+AGG - chr5_2:62745576-62745595 Msa0780700:intron 35.0%
CTAAAGTTGAAGGAATACTG+CGG - chr5_2:62745586-62745605 Msa0780700:intron 35.0%
AGAGTTCAAGAATACGAACA+AGG - chr5_2:62745639-62745658 Msa0780700:intron 35.0%
AACAGTCTTTCATCCATAGA+AGG + chr5_2:62745827-62745846 None:intergenic 35.0%
GACTGTTGAGGATAATATGT+AGG - chr5_2:62745840-62745859 Msa0780700:CDS 35.0%
TTCATGCTGTACTGCTTTAT+TGG - chr5_2:62746300-62746319 Msa0780700:intron 35.0%
GTCTCACATTCAATCTGATA+TGG - chr5_2:62746518-62746537 Msa0780700:intron 35.0%
AAAATGTTCATAATTGGGGG+GGG - chr5_2:62746546-62746565 Msa0780700:intron 35.0%
!!! TGGTTTTGTGATGATGAGTT+AGG - chr5_2:62746589-62746608 Msa0780700:intron 35.0%
! TTATTTAAGTTCAGCCAGCT+TGG - chr5_2:62746821-62746840 Msa0780700:intron 35.0%
AGTTTATAACTGTCAATGCC+AGG + chr5_2:62746886-62746905 None:intergenic 35.0%
AGCTCATCCTACAAACATAT+TGG + chr5_2:62746941-62746960 None:intergenic 35.0%
CTGCAAAGTTCAGATTACAA+TGG + chr5_2:62746973-62746992 None:intergenic 35.0%
GTAATCTGAACTTTGCAGTT+CGG - chr5_2:62746975-62746994 Msa0780700:intron 35.0%
AAATCCTTCGTGATAACAAC+AGG + chr5_2:62747141-62747160 None:intergenic 35.0%
! CCAAAAAAACATTTGGCCTT+TGG + chr5_2:62747173-62747192 None:intergenic 35.0%
!!! CCAAAGGCCAAATGTTTTTT+TGG - chr5_2:62747170-62747189 Msa0780700:intron 35.0%
ATTCACATGCAAAGAACTAG+AGG + chr5_2:62747313-62747332 None:intergenic 35.0%
!!! TTTTAGAGCTTTTGAGAGAG+TGG + chr5_2:62747473-62747492 None:intergenic 35.0%
CTTCTCATTCTAACGTGAAT+AGG - chr5_2:62747582-62747601 Msa0780700:intron 35.0%
GAGGATGAATTTGATGTTAG+TGG - chr5_2:62747680-62747699 Msa0780700:intron 35.0%
TATTGCTTGTGCGTTATTTG+CGG + chr5_2:62747741-62747760 None:intergenic 35.0%
! CATTTTCATTCTCTGCATCA+TGG + chr5_2:62748000-62748019 None:intergenic 35.0%
ATCAGAATAAGGGATGGAAT+AGG + chr5_2:62748132-62748151 None:intergenic 35.0%
ATTCTTATTCAGACCCTGTT+TGG - chr5_2:62748166-62748185 Msa0780700:intron 35.0%
AAGCACTTGTGATACTGTTT+GGG + chr5_2:62748398-62748417 None:intergenic 35.0%
TCAAATAAGTCAATCCGAAC+AGG - chr5_2:62748434-62748453 Msa0780700:intron 35.0%
CTTAGCATGATTACTAGTAG+AGG + chr5_2:62748588-62748607 None:intergenic 35.0%
CTCTACTAGTAATCATGCTA+AGG - chr5_2:62748586-62748605 Msa0780700:intron 35.0%
GGATAAAAGCAAGCAAAGAA+AGG - chr5_2:62748655-62748674 Msa0780700:intron 35.0%
ACAGAATCTTATCGTTCCAT+GGG - chr5_2:62748725-62748744 Msa0780700:intron 35.0%
TGAAGATAAAATCTCACCCA+TGG + chr5_2:62748744-62748763 None:intergenic 35.0%
! GGGTGAGATTTTATCTTCAA+TGG - chr5_2:62748745-62748764 Msa0780700:intron 35.0%
! ATTTTATCTTCAATGGACCC+TGG - chr5_2:62748752-62748771 Msa0780700:intron 35.0%
GTAAGTTTAGATCTCCTACA+AGG + chr5_2:62748931-62748950 None:intergenic 35.0%
! GCGAGTTGTTATTAGATTTG+GGG - chr5_2:62748967-62748986 Msa0780700:intron 35.0%
GATGCCAAATACTTAAGGTA+GGG + chr5_2:62749332-62749351 None:intergenic 35.0%
AGATGCCAAATACTTAAGGT+AGG + chr5_2:62749333-62749352 None:intergenic 35.0%
! TTTTCTGATTTAAACAGCCG+AGG - chr5_2:62749360-62749379 Msa0780700:CDS 35.0%
!! GTCTTTGCTGATTAAGTTGA+TGG + chr5_2:62750183-62750202 None:intergenic 35.0%
AACATATGTCAGCATACTCA+CGG + chr5_2:62750271-62750290 None:intergenic 35.0%
TGTTCAACTGTGCATAAAAG+TGG - chr5_2:62750497-62750516 Msa0780700:intron 35.0%
ATATTTACAAAGGTCGGTAG+AGG + chr5_2:62750542-62750561 None:intergenic 35.0%
!!! CTTTGGCTTTTCATTTCAAC+AGG - chr5_2:62750769-62750788 Msa0780700:intron 35.0%
GCTATAGCACTTTAGCATAT+CGG - chr5_2:62751142-62751161 Msa0780700:intron 35.0%
TTACAACCAGTGTTGTCAAA+TGG + chr5_2:62751202-62751221 None:intergenic 35.0%
! TACTGAAGTTATGACTTGGA+AGG + chr5_2:62751232-62751251 None:intergenic 35.0%
GAGTTACTGAAGTTATGACT+TGG + chr5_2:62751236-62751255 None:intergenic 35.0%
AATGTTGAAGATGCTACAGA+CGG + chr5_2:62751320-62751339 None:intergenic 35.0%
!!! AACTCGTCTCGATTTTTTCA+AGG - chr5_2:62751352-62751371 Msa0780700:five_prime_UTR 35.0%
!!! GTCTCGATTTTTTCAAGGAA+AGG - chr5_2:62751357-62751376 Msa0780700:five_prime_UTR 35.0%
! TGGTTTGTAAACCATGTCTT+GGG + chr5_2:62751441-62751460 None:intergenic 35.0%
!! TTGGTTTGTAAACCATGTCT+TGG + chr5_2:62751442-62751461 None:intergenic 35.0%
CATTGAGACCACAAATGATA+AGG + chr5_2:62751575-62751594 None:intergenic 35.0%
!!! TCCTCTATTTTGGTAGTGAA+AGG - chr5_2:62751635-62751654 Msa0780700:five_prime_UTR 35.0%
ACCTTTCACTACCAAAATAG+AGG + chr5_2:62751639-62751658 None:intergenic 35.0%
!!! TTTTGGTAGTGAAAGGTTGT+TGG - chr5_2:62751642-62751661 Msa0780700:five_prime_UTR 35.0%
! GAGTTGAAATGCTTTCCTTT+TGG - chr5_2:62751664-62751683 Msa0780700:five_prime_UTR 35.0%
! TTCGTATATTACTTTAGGGG+AGG - chr5_2:62751718-62751737 Msa0780700:five_prime_UTR 35.0%
AACTACTCTCTGGTAGAAGT+AGG - chr5_2:62741598-62741617 Msa0780700:three_prime_UTR 40.0%
ACACAAAATTTCACCCCAGA+AGG - chr5_2:62741748-62741767 Msa0780700:three_prime_UTR 40.0%
CACAAAATTTCACCCCAGAA+GGG - chr5_2:62741749-62741768 Msa0780700:three_prime_UTR 40.0%
!!! TTGGTGTTGGAGTTTGCTTT+TGG - chr5_2:62741927-62741946 Msa0780700:three_prime_UTR 40.0%
!! GATCTCTATGATGGGTTGAT+TGG - chr5_2:62741949-62741968 Msa0780700:exon 40.0%
!! CTATGATGGGTTGATTGGAT+TGG - chr5_2:62741954-62741973 Msa0780700:exon 40.0%
!! ATGATGGGTTGATTGGATTG+GGG - chr5_2:62741956-62741975 Msa0780700:exon 40.0%
!!! TGTGGTGTTTTTGAGGTTGA+TGG - chr5_2:62742027-62742046 Msa0780700:CDS 40.0%
GGAAATGTCTGCTTCTTTAG+CGG - chr5_2:62742100-62742119 Msa0780700:CDS 40.0%
CTCAATTTCCTTCACTCCTT+GGG + chr5_2:62742357-62742376 None:intergenic 40.0%
ACTCAATTTCCTTCACTCCT+TGG + chr5_2:62742358-62742377 None:intergenic 40.0%
AGGAGTGAAGGAAATTGAGT+AGG - chr5_2:62742358-62742377 Msa0780700:intron 40.0%
GGAGTGAAGGAAATTGAGTA+GGG - chr5_2:62742359-62742378 Msa0780700:intron 40.0%
GAAGGAAATTGAGTAGGGTT+TGG - chr5_2:62742364-62742383 Msa0780700:intron 40.0%
TCTAGCCTCAACACTAAACA+AGG + chr5_2:62742401-62742420 None:intergenic 40.0%
GTGCTGAGTGTGATTTAACT+TGG - chr5_2:62742432-62742451 Msa0780700:intron 40.0%
! TTGCGTATATTTAAGACGGG+AGG - chr5_2:62742712-62742731 Msa0780700:intron 40.0%
! TGCGTATATTTAAGACGGGA+GGG - chr5_2:62742713-62742732 Msa0780700:intron 40.0%
!! ATAGTGGGTAGCTGACATTA+AGG - chr5_2:62742923-62742942 Msa0780700:intron 40.0%
GGTAGCTGACATTAAGGAAT+AGG - chr5_2:62742929-62742948 Msa0780700:intron 40.0%
TGGAAATTAACCCAGTCAAC+CGG + chr5_2:62743095-62743114 None:intergenic 40.0%
AAACCTTGTATATACAGGGG+GGG + chr5_2:62743192-62743211 None:intergenic 40.0%
CCGCAAGAACAAAGATTGAT+AGG + chr5_2:62743240-62743259 None:intergenic 40.0%
TAGGAATAGGATGGAAGTCA+TGG - chr5_2:62743356-62743375 Msa0780700:intron 40.0%
GCATCATTCAGAACAACAGA+AGG + chr5_2:62743507-62743526 None:intergenic 40.0%
! ACAATTCAGGAAGGTATGTC+TGG - chr5_2:62743966-62743985 Msa0780700:intron 40.0%
TCCATTGTGTCCCATAACAA+GGG + chr5_2:62744219-62744238 None:intergenic 40.0%
TTCCATTGTGTCCCATAACA+AGG + chr5_2:62744220-62744239 None:intergenic 40.0%
! TGGGACACAATGGAATTTTC+AGG - chr5_2:62744225-62744244 Msa0780700:intron 40.0%
CCAACAACCAAAGACTTAAC+TGG + chr5_2:62744508-62744527 None:intergenic 40.0%
CCAGTTAAGTCTTTGGTTGT+TGG - chr5_2:62744505-62744524 Msa0780700:intron 40.0%
TCTTCAAGTGCTAGCAGAAT+CGG + chr5_2:62744535-62744554 None:intergenic 40.0%
CACTTGAAGATATTGACGGA+GGG - chr5_2:62744545-62744564 Msa0780700:intron 40.0%
! CTTAGGTTTCTAGAGAAGCA+TGG - chr5_2:62744589-62744608 Msa0780700:CDS 40.0%
! AATTTATTGGCTAGTAGGCG+GGG - chr5_2:62744727-62744746 Msa0780700:CDS 40.0%
GCTACGCTATAGCAATATAG+TGG + chr5_2:62745056-62745075 None:intergenic 40.0%
AGTGAATCGCGAAACAATAG+TGG + chr5_2:62745093-62745112 None:intergenic 40.0%
TGTTGTCAATCTCCAATAGC+GGG + chr5_2:62745200-62745219 None:intergenic 40.0%
GTGTTGTCAATCTCCAATAG+CGG + chr5_2:62745201-62745220 None:intergenic 40.0%
AAGTGTCACGTCATATCTCA+TGG + chr5_2:62745229-62745248 None:intergenic 40.0%
TGGTTCTCACCACTTCATAT+GGG + chr5_2:62745300-62745319 None:intergenic 40.0%
TCCAACATTCCCTCTCTATT+GGG + chr5_2:62745334-62745353 None:intergenic 40.0%
TTCCAACATTCCCTCTCTAT+TGG + chr5_2:62745335-62745354 None:intergenic 40.0%
GCGGCATTAAACAATGCTTA+GGG + chr5_2:62745521-62745540 None:intergenic 40.0%
TGCGGCATTAAACAATGCTT+AGG + chr5_2:62745522-62745541 None:intergenic 40.0%
GTTCGTATTCTTGAACTCTG+CGG + chr5_2:62745638-62745657 None:intergenic 40.0%
! AGAGCATTTGAGAAAATCGC+TGG + chr5_2:62745667-62745686 None:intergenic 40.0%
CTATGGATGAAAGACTGTTG+AGG - chr5_2:62745828-62745847 Msa0780700:CDS 40.0%
AAAGGTTGAGTTTGATGCAG+AGG - chr5_2:62745935-62745954 Msa0780700:intron 40.0%
! GTAAAGCCCCTCTTGATAAT+AGG - chr5_2:62746014-62746033 Msa0780700:CDS 40.0%
! ATGCTGTACTGCTTTATTGG+AGG - chr5_2:62746303-62746322 Msa0780700:intron 40.0%
ACATTTCTCACCTTTCAAGC+TGG - chr5_2:62746569-62746588 Msa0780700:intron 40.0%
CATCACAAAACCAGCTTGAA+AGG + chr5_2:62746582-62746601 None:intergenic 40.0%
CACTTCATATGTTCAGTCCT+AGG - chr5_2:62746688-62746707 Msa0780700:intron 40.0%
! GACAAGATGCAATCAAGTTG+AGG + chr5_2:62747210-62747229 None:intergenic 40.0%
ACAAGAAATTGATCGCAAGG+AGG - chr5_2:62747375-62747394 Msa0780700:intron 40.0%
! CTCTGTAACAAACGTCGATT+TGG + chr5_2:62747448-62747467 None:intergenic 40.0%
! CAAATCGACGTTTGTTACAG+AGG - chr5_2:62747446-62747465 Msa0780700:intron 40.0%
AACTCGAGAATCAGCTGAAA+TGG + chr5_2:62747915-62747934 None:intergenic 40.0%
!! GATTCTCGAGTTGAAAACAG+CGG - chr5_2:62747923-62747942 Msa0780700:intron 40.0%
!! ATTCTCGAGTTGAAAACAGC+GGG - chr5_2:62747924-62747943 Msa0780700:intron 40.0%
AGTGAAAGTAGTGGTTATGC+TGG - chr5_2:62748067-62748086 Msa0780700:intron 40.0%
CAGACACAGGATCAGAATAA+GGG + chr5_2:62748142-62748161 None:intergenic 40.0%
TCAGACACAGGATCAGAATA+AGG + chr5_2:62748143-62748162 None:intergenic 40.0%
AAACTATCCTTGCGTGCTTA+TGG - chr5_2:62748319-62748338 Msa0780700:intron 40.0%
ATACTGTTTGGGAGAGCTTA+TGG + chr5_2:62748387-62748406 None:intergenic 40.0%
CAAGCACTTGTGATACTGTT+TGG + chr5_2:62748399-62748418 None:intergenic 40.0%
! TGCTTTTATCCTCAGACAGA+TGG + chr5_2:62748646-62748665 None:intergenic 40.0%
GAACGATAAGATTCTGTGGA+AGG + chr5_2:62748722-62748741 None:intergenic 40.0%
CATGGAACGATAAGATTCTG+TGG + chr5_2:62748726-62748745 None:intergenic 40.0%
CACAGAATCTTATCGTTCCA+TGG - chr5_2:62748724-62748743 Msa0780700:intron 40.0%
! GCACAAGCTTTAGTACTAAG+CGG - chr5_2:62748843-62748862 Msa0780700:CDS 40.0%
TACTAAGCGGTCAACATTCT+GGG - chr5_2:62748856-62748875 Msa0780700:CDS 40.0%
! ACTTAGGGTCTGTTTGTTAC+AGG - chr5_2:62749086-62749105 Msa0780700:intron 40.0%
ACACAGCTAGAAAACTAAGC+AGG + chr5_2:62749309-62749328 None:intergenic 40.0%
GTGTCCCTACCTTAAGTATT+TGG - chr5_2:62749325-62749344 Msa0780700:CDS 40.0%
GCAACATAGAATTGCAAAGG+AGG - chr5_2:62749626-62749645 Msa0780700:intron 40.0%
TACAAGCAAGCTTAGAGAGA+AGG - chr5_2:62749754-62749773 Msa0780700:intron 40.0%
GACAGATTTCCAATTCACGT+GGG - chr5_2:62749982-62750001 Msa0780700:intron 40.0%
TATGGTTCAGTTACAGACGT+AGG - chr5_2:62750211-62750230 Msa0780700:intron 40.0%
TGAAAGGAAACAAAGGACTG+AGG - chr5_2:62750416-62750435 Msa0780700:intron 40.0%
! ATTTCAACAGGAGAGTGTGT+TGG - chr5_2:62750781-62750800 Msa0780700:intron 40.0%
! TTTCAACAGGAGAGTGTGTT+GGG - chr5_2:62750782-62750801 Msa0780700:intron 40.0%
!! AAAGGACAAGTATTGGCTTC+TGG - chr5_2:62750824-62750843 Msa0780700:intron 40.0%
!! CAAGTATTGGCTTCTGGTAA+TGG - chr5_2:62750830-62750849 Msa0780700:intron 40.0%
TCTATAAATGGCTTCCGAGA+TGG + chr5_2:62750866-62750885 None:intergenic 40.0%
CTAGGACTCGAGTCTATAAA+TGG + chr5_2:62750878-62750897 None:intergenic 40.0%
!! TCGGTGCTTTTTGAATCACT+AGG + chr5_2:62750896-62750915 None:intergenic 40.0%
!! TAGTGATTCAAAAAGCACCG+AGG - chr5_2:62750895-62750914 Msa0780700:intron 40.0%
! TAGCTGCTATTTGACAACAC+TGG + chr5_2:62751055-62751074 None:intergenic 40.0%
! GTTATGACTTGGAAGGAACT+CGG + chr5_2:62751225-62751244 None:intergenic 40.0%
TAGTAGCAATCATGGGTTTC+AGG - chr5_2:62751271-62751290 Msa0780700:intron 40.0%
ACAAACCAACATCACCATCA+TGG - chr5_2:62751453-62751472 Msa0780700:five_prime_UTR 40.0%
CAAGCCAAAATTCTTCACCA+AGG + chr5_2:62751512-62751531 None:intergenic 40.0%
! GTATATTACTTTAGGGGAGG+AGG - chr5_2:62751721-62751740 Msa0780700:five_prime_UTR 40.0%
! TGGATTAGGTGAGATGAGGA+AGG + chr5_2:62741681-62741700 None:intergenic 45.0%
AAATTTCACCCCAGAAGGGA+AGG - chr5_2:62741753-62741772 Msa0780700:three_prime_UTR 45.0%
AATTTCACCCCAGAAGGGAA+GGG - chr5_2:62741754-62741773 Msa0780700:three_prime_UTR 45.0%
! ATTGGATTGGGGACAAGGAT+TGG - chr5_2:62741967-62741986 Msa0780700:exon 45.0%
!! CTTTTGAGAGACCTAGACCT+GGG - chr5_2:62742123-62742142 Msa0780700:CDS 45.0%
!! TTTTGAGAGACCTAGACCTG+GGG - chr5_2:62742124-62742143 Msa0780700:CDS 45.0%
TAGACCTGGGGCTTCTAATA+CGG - chr5_2:62742136-62742155 Msa0780700:CDS 45.0%
AAATGTTGCCCAAGGAGTGA+AGG - chr5_2:62742346-62742365 Msa0780700:intron 45.0%
! GCGTATATTTAAGACGGGAG+GGG - chr5_2:62742714-62742733 Msa0780700:intron 45.0%
! CGTATATTTAAGACGGGAGG+GGG - chr5_2:62742715-62742734 Msa0780700:intron 45.0%
GGGATATGGACACTAACCTT+TGG + chr5_2:62743170-62743189 None:intergenic 45.0%
AACCTTGTATATACAGGGGG+GGG + chr5_2:62743191-62743210 None:intergenic 45.0%
GATGGAAGTCATGGAAGAAG+CGG - chr5_2:62743365-62743384 Msa0780700:intron 45.0%
TATACTCACGCGCACATCAT+TGG - chr5_2:62743393-62743412 Msa0780700:intron 45.0%
AGCGTACAGTGGTAAGTGAT+TGG - chr5_2:62743578-62743597 Msa0780700:intron 45.0%
!! TTCTGAAGTCTCCGCCTTAA+GGG + chr5_2:62744138-62744157 None:intergenic 45.0%
CAAGCGTCCAGTTAAGTCTT+TGG - chr5_2:62744498-62744517 Msa0780700:intron 45.0%
GCACTTGAAGATATTGACGG+AGG - chr5_2:62744544-62744563 Msa0780700:intron 45.0%
TTTCTGCTGTTACCCGCTAT+TGG - chr5_2:62745185-62745204 Msa0780700:intron 45.0%
ATCTGCGATCCCATATGAAG+TGG - chr5_2:62745288-62745307 Msa0780700:intron 45.0%
GTGGTTCTCACCACTTCATA+TGG + chr5_2:62745301-62745320 None:intergenic 45.0%
ACCCAATAGAGAGGGAATGT+TGG - chr5_2:62745330-62745349 Msa0780700:intron 45.0%
!! CGTTGTTGGTGACTGTGTTA+AGG - chr5_2:62745968-62745987 Msa0780700:intron 45.0%
AAAGCAGTACAGCATGAAGC+TGG + chr5_2:62746298-62746317 None:intergenic 45.0%
TGGCCCAACATATCTTGGAT+AGG + chr5_2:62746645-62746664 None:intergenic 45.0%
TATGTTGGGCCACCTGTTAT+CGG - chr5_2:62746653-62746672 Msa0780700:intron 45.0%
TGATCTGAGTGACCGATAAC+AGG + chr5_2:62746668-62746687 None:intergenic 45.0%
GGAAAAACAATTCCACGCCT+AGG + chr5_2:62746708-62746727 None:intergenic 45.0%
GACACCTGTTGTTATCACGA+AGG - chr5_2:62747134-62747153 Msa0780700:CDS 45.0%
AAATTGATCGCAAGGAGGCT+AGG - chr5_2:62747380-62747399 Msa0780700:intron 45.0%
TGCAATGCGCTGTGCTATAT+TGG - chr5_2:62747408-62747427 Msa0780700:intron 45.0%
!! AACAAACGTCGATTTGGCTC+TGG + chr5_2:62747442-62747461 None:intergenic 45.0%
TCACATTCTCCAGCTAACAG+AGG + chr5_2:62747656-62747675 None:intergenic 45.0%
GTTATTTGCGGCATTAGCAG+CGG + chr5_2:62747729-62747748 None:intergenic 45.0%
CTCATACTCCTCCAACAAAG+TGG + chr5_2:62747768-62747787 None:intergenic 45.0%
CACAGGATCAGAATAAGGGA+TGG + chr5_2:62748138-62748157 None:intergenic 45.0%
CTCATTTCCATAAGCACGCA+AGG + chr5_2:62748329-62748348 None:intergenic 45.0%
TCGAATACTTAGGGCCTGTT+CGG + chr5_2:62748451-62748470 None:intergenic 45.0%
GGAGGAGATGATTCTGATGT+TGG - chr5_2:62748560-62748579 Msa0780700:intron 45.0%
TCCTGATAACCATCTGTCTG+AGG - chr5_2:62748634-62748653 Msa0780700:intron 45.0%
TCCTCAGACAGATGGTTATC+AGG + chr5_2:62748638-62748657 None:intergenic 45.0%
TCTGTGGAAGGCAACACAAT+TGG + chr5_2:62748710-62748729 None:intergenic 45.0%
TCACAGGTAAATGGTTGCCA+GGG + chr5_2:62748772-62748791 None:intergenic 45.0%
ATCACAGGTAAATGGTTGCC+AGG + chr5_2:62748773-62748792 None:intergenic 45.0%
GCGCTTCAATCACAGGTAAA+TGG + chr5_2:62748781-62748800 None:intergenic 45.0%
ATTGAAGCGCAATCAGGTTC+TGG - chr5_2:62748791-62748810 Msa0780700:intron 45.0%
!! GGTTCTGGAAAGCAAACAAC+CGG - chr5_2:62748806-62748825 Msa0780700:intron 45.0%
ACAACCGGTAAAGCTAGTAG+TGG - chr5_2:62748821-62748840 Msa0780700:intron 45.0%
!! TGTGCCACTACTAGCTTTAC+CGG + chr5_2:62748828-62748847 None:intergenic 45.0%
GTACTAAGCGGTCAACATTC+TGG - chr5_2:62748855-62748874 Msa0780700:CDS 45.0%
ACTAAGCGGTCAACATTCTG+GGG - chr5_2:62748857-62748876 Msa0780700:CDS 45.0%
! GAATCAACCGATTCCACTGA+CGG + chr5_2:62749392-62749411 None:intergenic 45.0%
! GTGGAATCGGTTGATTCTTC+TGG - chr5_2:62749395-62749414 Msa0780700:intron 45.0%
! GGTTGATTCTTCTGGAGAAG+AGG - chr5_2:62749403-62749422 Msa0780700:intron 45.0%
!! TTTGCAGGCTTGCTATTCAG+AGG - chr5_2:62749580-62749599 Msa0780700:intron 45.0%
AAGAACAGTTGCAAGCTGAG+AGG - chr5_2:62749916-62749935 Msa0780700:intron 45.0%
AGAACAGTTGCAAGCTGAGA+GGG - chr5_2:62749917-62749936 Msa0780700:intron 45.0%
CTTAGAGCTGCATTGGAAGT+TGG - chr5_2:62749942-62749961 Msa0780700:intron 45.0%
!! GTTGGTTTGAGCATGTCTTC+AGG - chr5_2:62749960-62749979 Msa0780700:intron 45.0%
GGACAGATTTCCAATTCACG+TGG - chr5_2:62749981-62750000 Msa0780700:intron 45.0%
GATTTCCAATTCACGTGGGA+TGG - chr5_2:62749986-62750005 Msa0780700:intron 45.0%
TGAATCCATCCCACGTGAAT+TGG + chr5_2:62749994-62750013 None:intergenic 45.0%
! TTCACGTGGGATGGATTCAA+AGG - chr5_2:62749995-62750014 Msa0780700:intron 45.0%
AAAGACAAAGGCTGAGCTAG+AGG - chr5_2:62750099-62750118 Msa0780700:intron 45.0%
! TGTGGCTAGGTTGAAGCAAA+AGG - chr5_2:62750144-62750163 Msa0780700:intron 45.0%
CAGCAAAGACAGCATCACTA+TGG - chr5_2:62750193-62750212 Msa0780700:intron 45.0%
TCACGGTTGAGGAAGATTCT+GGG + chr5_2:62750254-62750273 None:intergenic 45.0%
GGCTCTTGCTTCAATAACAC+AGG - chr5_2:62750742-62750761 Msa0780700:intron 45.0%
!! TGGCTTCTGGTAATGGTAGT+AGG - chr5_2:62750837-62750856 Msa0780700:intron 45.0%
AGCATGTCTGTAGATGAGCT+TGG - chr5_2:62750926-62750945 Msa0780700:intron 45.0%
!! GAGCTTGGTGTTGTTGATTC+TGG - chr5_2:62750941-62750960 Msa0780700:intron 45.0%
GTGTTGTCAAATGGAGATCC+CGG + chr5_2:62751193-62751212 None:intergenic 45.0%
GGATCTCCATTTGACAACAC+TGG - chr5_2:62751193-62751212 Msa0780700:intron 45.0%
TTCTTCCACTTCCCAAGACA+TGG - chr5_2:62751427-62751446 Msa0780700:five_prime_UTR 45.0%
GTAAACCATGTCTTGGGAAG+TGG + chr5_2:62751435-62751454 None:intergenic 45.0%
! CAACTCCATGATGGTGATGT+TGG + chr5_2:62751461-62751480 None:intergenic 45.0%
! TATTACTTTAGGGGAGGAGG+TGG - chr5_2:62751724-62751743 Msa0780700:five_prime_UTR 45.0%
!! GATTTATTTAATTATATAAT+AGG + chr5_2:62742837-62742856 None:intergenic 5.0%
!!! ATGATTTTTTAATTATATTT+TGG - chr5_2:62743274-62743293 Msa0780700:CDS 5.0%
!!! TTTTTTATTTTTATTTTTTG+TGG - chr5_2:62743991-62744010 Msa0780700:intron 5.0%
!!! TTTTTATTTTTATTTTTTGT+GGG - chr5_2:62743992-62744011 Msa0780700:intron 5.0%
!!! TATTTATTATTAAGTATTTT+CGG + chr5_2:62744786-62744805 None:intergenic 5.0%
GGTATAACCCTTCCCTTCTG+GGG + chr5_2:62741764-62741783 None:intergenic 50.0%
GGGTATAACCCTTCCCTTCT+GGG + chr5_2:62741765-62741784 None:intergenic 50.0%
AGGGTATAACCCTTCCCTTC+TGG + chr5_2:62741766-62741785 None:intergenic 50.0%
! GGTTGATTGGATTGGGGACA+AGG - chr5_2:62741962-62741981 Msa0780700:exon 50.0%
!! GCTTTTGAGAGACCTAGACC+TGG - chr5_2:62742122-62742141 Msa0780700:CDS 50.0%
GTATTAGAAGCCCCAGGTCT+AGG + chr5_2:62742137-62742156 None:intergenic 50.0%
CATACCGTATTAGAAGCCCC+AGG + chr5_2:62742143-62742162 None:intergenic 50.0%
CGGCGCATTCACCAAAATCA+AGG + chr5_2:62742616-62742635 None:intergenic 50.0%
GAGGGGGTTACATGATAGGA+AGG - chr5_2:62742731-62742750 Msa0780700:intron 50.0%
GGGGTTACATGATAGGAAGG+CGG - chr5_2:62742734-62742753 Msa0780700:intron 50.0%
TTGGTCATAGTCCGGTTGAC+TGG - chr5_2:62743081-62743100 Msa0780700:intron 50.0%
TGGTCATAGTCCGGTTGACT+GGG - chr5_2:62743082-62743101 Msa0780700:intron 50.0%
TATATACAGGGGGGGGGATA+TGG + chr5_2:62743184-62743203 None:intergenic 50.0%
ACCTTGTATATACAGGGGGG+GGG + chr5_2:62743190-62743209 None:intergenic 50.0%
! TAGAGTACCCTTCCTCAGAG+AGG - chr5_2:62743905-62743924 Msa0780700:intron 50.0%
TTTACTTCCCCACCTCTCTG+AGG + chr5_2:62743920-62743939 None:intergenic 50.0%
TGGGGAAGTAAACATGACGC+TGG - chr5_2:62743928-62743947 Msa0780700:intron 50.0%
GGGGAAGTAAACATGACGCT+GGG - chr5_2:62743929-62743948 Msa0780700:intron 50.0%
GAAGTAAACATGACGCTGGG+CGG - chr5_2:62743932-62743951 Msa0780700:intron 50.0%
!! CTTCTGAAGTCTCCGCCTTA+AGG + chr5_2:62744139-62744158 None:intergenic 50.0%
!! AGCACTTGGTGCTTGTGCAA+GGG + chr5_2:62744195-62744214 None:intergenic 50.0%
! ACCAAGTGCTGCCCTTGTTA+TGG - chr5_2:62744205-62744224 Msa0780700:intron 50.0%
! CCAAGTGCTGCCCTTGTTAT+GGG - chr5_2:62744206-62744225 Msa0780700:intron 50.0%
! GCCCTTGTTATGGGACACAA+TGG - chr5_2:62744215-62744234 Msa0780700:intron 50.0%
CAATTTAAGCCAAAGCGGCG+CGG - chr5_2:62745264-62745283 Msa0780700:intron 50.0%
GTACAGCATGAAGCTGGAAC+TGG + chr5_2:62746292-62746311 None:intergenic 50.0%
ACAGGTGGCCCAACATATCT+TGG + chr5_2:62746650-62746669 None:intergenic 50.0%
TCTGAGTGACCGATAACAGG+TGG + chr5_2:62746665-62746684 None:intergenic 50.0%
CATATGTTCAGTCCTAGGCG+TGG - chr5_2:62746693-62746712 Msa0780700:intron 50.0%
!! ATGCCGAAGCTTGTTGAGCA+AGG + chr5_2:62746765-62746784 None:intergenic 50.0%
ATGCCAGGTGACACAGAAAC+AGG + chr5_2:62746871-62746890 None:intergenic 50.0%
! TTCTGCTGTTGCTGCTTGCA+TGG - chr5_2:62747613-62747632 Msa0780700:intron 50.0%
AACAGAGGCCGTAAGAGCAA+GGG + chr5_2:62747641-62747660 None:intergenic 50.0%
TAACAGAGGCCGTAAGAGCA+AGG + chr5_2:62747642-62747661 None:intergenic 50.0%
GTTAGCTGGAGAATGTGAGC+TGG - chr5_2:62747658-62747677 Msa0780700:intron 50.0%
GATGCTGATCGTGTTCACAG+TGG - chr5_2:62748037-62748056 Msa0780700:intron 50.0%
! TTTTGTGTGCCCTTTGCAGC+AGG - chr5_2:62748532-62748551 Msa0780700:intron 50.0%
CTCCAAATGCCTGCTGCAAA+GGG + chr5_2:62748544-62748563 None:intergenic 50.0%
GTGGAAGGCAACACAATTGG+TGG + chr5_2:62748707-62748726 None:intergenic 50.0%
CCTGATTGCGCTTCAATCAC+AGG + chr5_2:62748788-62748807 None:intergenic 50.0%
CCTGTGATTGAAGCGCAATC+AGG - chr5_2:62748785-62748804 Msa0780700:intron 50.0%
GAAGTCACCGTCAGTGGAAT+CGG - chr5_2:62749382-62749401 Msa0780700:intron 50.0%
AGCTTTGCATGAACGACGCT+TGG - chr5_2:62749782-62749801 Msa0780700:intron 50.0%
GAGGGATCTTAGAGCTGCAT+TGG - chr5_2:62749935-62749954 Msa0780700:intron 50.0%
! TGCACTTGCTGAAGCTGATG+TGG - chr5_2:62750126-62750145 Msa0780700:intron 50.0%
TTGCTGAAGCTGATGTGGCT+AGG - chr5_2:62750131-62750150 Msa0780700:intron 50.0%
CTCACGGTTGAGGAAGATTC+TGG + chr5_2:62750255-62750274 None:intergenic 50.0%
TGTCAGCATACTCACGGTTG+AGG + chr5_2:62750265-62750284 None:intergenic 50.0%
! AGAGTGTGTTGGGCTCTGAT+TGG - chr5_2:62750792-62750811 Msa0780700:intron 50.0%
ATGGTAGTAGGCAGCCATCT+CGG - chr5_2:62750849-62750868 Msa0780700:intron 50.0%
AGACATGCTTGTCGATGCCT+CGG + chr5_2:62750915-62750934 None:intergenic 50.0%
CTCAGTGCCTTCCACTTCAA+GGG - chr5_2:62750964-62750983 Msa0780700:intron 50.0%
GGCAGCAGAGGTAAGAGTTA+AGG - chr5_2:62750985-62751004 Msa0780700:intron 50.0%
! TTGGCTGGTCAACTCCATGA+TGG + chr5_2:62751470-62751489 None:intergenic 50.0%
ACGGGAGGGGGTTACATGAT+AGG - chr5_2:62742727-62742746 Msa0780700:intron 55.0%
TCCCCCCCCCTGTATATACA+AGG - chr5_2:62743186-62743205 Msa0780700:CDS 55.0%
GGAAGTCATGGAAGAAGCGG+TGG - chr5_2:62743368-62743387 Msa0780700:intron 55.0%
AGTACCCTTCCTCAGAGAGG+TGG - chr5_2:62743908-62743927 Msa0780700:intron 55.0%
GTACCCTTCCTCAGAGAGGT+GGG - chr5_2:62743909-62743928 Msa0780700:intron 55.0%
TACCCTTCCTCAGAGAGGTG+GGG - chr5_2:62743910-62743929 Msa0780700:intron 55.0%
! TTCCCCACCTCTCTGAGGAA+GGG + chr5_2:62743915-62743934 None:intergenic 55.0%
TTATTTCCAGACGGGCGCGA+TGG - chr5_2:62744101-62744120 Msa0780700:intron 55.0%
TGGTCGAGCGTTCACCCTTA+AGG - chr5_2:62744121-62744140 Msa0780700:intron 55.0%
TCGAGCGTTCACCCTTAAGG+CGG - chr5_2:62744124-62744143 Msa0780700:intron 55.0%
!! CAGCACTTGGTGCTTGTGCA+AGG + chr5_2:62744196-62744215 None:intergenic 55.0%
CCCATAACAAGGGCAGCACT+TGG + chr5_2:62744209-62744228 None:intergenic 55.0%
GAGGAAGATGCGCACGTTGT+TGG - chr5_2:62745954-62745973 Msa0780700:intron 55.0%
GAAGCTGGAACTGGAGAGGA+GGG + chr5_2:62746283-62746302 None:intergenic 55.0%
TGAAGCTGGAACTGGAGAGG+AGG + chr5_2:62746284-62746303 None:intergenic 55.0%
GCATGAAGCTGGAACTGGAG+AGG + chr5_2:62746287-62746306 None:intergenic 55.0%
!! CCGAAGCTTGTTGAGCAAGG+CGG + chr5_2:62746762-62746781 None:intergenic 55.0%
CCGCCTTGCTCAACAAGCTT+CGG - chr5_2:62746759-62746778 Msa0780700:intron 55.0%
CAGGTGACACAGAAACAGGC+TGG + chr5_2:62746867-62746886 None:intergenic 55.0%
!! CAGCCTGTTTCTGTGTCACC+TGG - chr5_2:62746865-62746884 Msa0780700:intron 55.0%
GCATGGCACCCTTGCTCTTA+CGG - chr5_2:62747630-62747649 Msa0780700:intron 55.0%
CTCTTACGGCCTCTGTTAGC+TGG - chr5_2:62747644-62747663 Msa0780700:intron 55.0%
AGCTGGAGAATGTGAGCTGG+AGG - chr5_2:62747661-62747680 Msa0780700:intron 55.0%
TGCCCTTTGCAGCAGGCATT+TGG - chr5_2:62748539-62748558 Msa0780700:intron 55.0%
CCTCCAAATGCCTGCTGCAA+AGG + chr5_2:62748545-62748564 None:intergenic 55.0%
CCTTTGCAGCAGGCATTTGG+AGG - chr5_2:62748542-62748561 Msa0780700:intron 55.0%
TCCACTGACGGTGACTTCCT+CGG + chr5_2:62749380-62749399 None:intergenic 55.0%
GAGGAAGATTCTGGGCATGC+TGG + chr5_2:62750246-62750265 None:intergenic 55.0%
GCTCAGTGCCTTCCACTTCA+AGG - chr5_2:62750963-62750982 Msa0780700:intron 55.0%
TCTGCTGCCCTTGAAGTGGA+AGG + chr5_2:62750974-62750993 None:intergenic 55.0%
TTCCACTTCAAGGGCAGCAG+AGG - chr5_2:62750973-62750992 Msa0780700:intron 55.0%
TACCTCTGCTGCCCTTGAAG+TGG + chr5_2:62750978-62750997 None:intergenic 55.0%
!! GGAAAGGCGTTCGCAGTTGA+TGG - chr5_2:62751373-62751392 Msa0780700:five_prime_UTR 55.0%
! CTTCCCCACCTCTCTGAGGA+AGG + chr5_2:62743916-62743935 None:intergenic 60.0%
ACTGGACGCTTGTCTCTCCC+TGG + chr5_2:62744490-62744509 None:intergenic 60.0%
GCGGCAATCTGCAGACGTTG+AGG - chr5_2:62745605-62745624 Msa0780700:intron 60.0%
!! AGCGGTCAACATTCTGGGGC+AGG - chr5_2:62748861-62748880 Msa0780700:CDS 60.0%
AGGGGAGGAGGTGGAGTTTG+TGG - chr5_2:62751733-62751752 Msa0780700:five_prime_UTR 60.0%
GCCGAGGAAGTCACCGTCAG+TGG - chr5_2:62749376-62749395 Msa0780700:intron 65.0%
TCGCAGATGCCGCGCCGCTT+TGG + chr5_2:62745276-62745295 None:intergenic 70.0%
GCTCGACCATCGCGCCCGTC+TGG + chr5_2:62744110-62744129 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 62741548 62751901 62741548 ID=Msa0780700;Name=Msa0780700
chr5_2 mRNA 62741548 62751901 62741548 ID=Msa0780700-mRNA-1;Parent=Msa0780700;Name=Msa0780700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=556|1|1|1|1|1|21|420|872
chr5_2 exon 62741548 62742156 62741548 ID=Msa0780700-mRNA-1:exon:18546;Parent=Msa0780700-mRNA-1
chr5_2 exon 62742455 62742658 62742455 ID=Msa0780700-mRNA-1:exon:18545;Parent=Msa0780700-mRNA-1
chr5_2 exon 62743012 62743081 62743012 ID=Msa0780700-mRNA-1:exon:18544;Parent=Msa0780700-mRNA-1
chr5_2 exon 62743180 62743346 62743180 ID=Msa0780700-mRNA-1:exon:18543;Parent=Msa0780700-mRNA-1
chr5_2 exon 62743433 62743546 62743433 ID=Msa0780700-mRNA-1:exon:18542;Parent=Msa0780700-mRNA-1
chr5_2 exon 62743631 62743714 62743631 ID=Msa0780700-mRNA-1:exon:18541;Parent=Msa0780700-mRNA-1
chr5_2 exon 62743802 62743862 62743802 ID=Msa0780700-mRNA-1:exon:18540;Parent=Msa0780700-mRNA-1
chr5_2 exon 62744023 62744072 62744023 ID=Msa0780700-mRNA-1:exon:18539;Parent=Msa0780700-mRNA-1
chr5_2 exon 62744560 62744898 62744560 ID=Msa0780700-mRNA-1:exon:18538;Parent=Msa0780700-mRNA-1
chr5_2 exon 62745338 62745559 62745338 ID=Msa0780700-mRNA-1:exon:18537;Parent=Msa0780700-mRNA-1
chr5_2 exon 62745650 62745893 62745650 ID=Msa0780700-mRNA-1:exon:18536;Parent=Msa0780700-mRNA-1
chr5_2 exon 62745982 62746069 62745982 ID=Msa0780700-mRNA-1:exon:18535;Parent=Msa0780700-mRNA-1
chr5_2 exon 62747118 62747187 62747118 ID=Msa0780700-mRNA-1:exon:18534;Parent=Msa0780700-mRNA-1
chr5_2 exon 62747460 62747515 62747460 ID=Msa0780700-mRNA-1:exon:18533;Parent=Msa0780700-mRNA-1
chr5_2 exon 62747789 62747866 62747789 ID=Msa0780700-mRNA-1:exon:18532;Parent=Msa0780700-mRNA-1
chr5_2 exon 62748839 62748958 62748839 ID=Msa0780700-mRNA-1:exon:18531;Parent=Msa0780700-mRNA-1
chr5_2 exon 62749162 62749385 62749162 ID=Msa0780700-mRNA-1:exon:18530;Parent=Msa0780700-mRNA-1
chr5_2 exon 62749471 62749541 62749471 ID=Msa0780700-mRNA-1:exon:18529;Parent=Msa0780700-mRNA-1
chr5_2 exon 62750014 62750090 62750014 ID=Msa0780700-mRNA-1:exon:18528;Parent=Msa0780700-mRNA-1
chr5_2 exon 62750277 62750313 62750277 ID=Msa0780700-mRNA-1:exon:18527;Parent=Msa0780700-mRNA-1
chr5_2 exon 62751292 62751901 62751292 ID=Msa0780700-mRNA-1:exon:18526;Parent=Msa0780700-mRNA-1
chr5_2 five_prime_UTR 62751346 62751901 62751346 ID=Msa0780700-mRNA-1:five_prime_utr;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62751292 62751345 62751292 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62750277 62750313 62750277 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62750014 62750090 62750014 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62749471 62749541 62749471 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62749162 62749385 62749162 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62748839 62748958 62748839 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62747789 62747866 62747789 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62747460 62747515 62747460 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62747118 62747187 62747118 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62745982 62746069 62745982 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62745650 62745893 62745650 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62745338 62745559 62745338 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62744560 62744898 62744560 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62744023 62744072 62744023 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62743802 62743862 62743802 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62743631 62743714 62743631 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62743433 62743546 62743433 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62743180 62743346 62743180 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62743012 62743081 62743012 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62742455 62742658 62742455 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 CDS 62741968 62742156 62741968 ID=Msa0780700-mRNA-1:cds;Parent=Msa0780700-mRNA-1
chr5_2 three_prime_UTR 62741548 62741967 62741548 ID=Msa0780700-mRNA-1:three_prime_utr;Parent=Msa0780700-mRNA-1
Gene Sequence

>Msa0780700

ATGTCTGCTTCTTTAGCGGCTTTTGAGAGACCTAGACCTGGGGCTTCTAATACGGTTTTCAAAAGTGGCCCACTTTTCATATCTTCCAAAGGAATAGGATGGAAGTCATGGAAGAAGCGGTGGTTTATACTCACGCGCACATCATTGGTTTTCTTCAAAAATGATCCGAGTACCCTTCCTCAGAGAGGTGGGGAAGTAAACATGACGCTGGGCGGTATTGACTTAAACAATTCAGGAAGTGTTGTTGTTAGAGAAGACAAAAAGCTGCTTACAGTATTATTTCCAGACGGGCGCGATGGTCGAGCGTTCACCCTTAAGGCGGAGACTTCAGAAGACTTGTTTGAATGGAAGACAGCTCTTGAACAAGCCCTTGCACAAGCACCAAGTGCTGCCCTTGTTATGGGACACAATGGAATTTTCAGGAACGATACAACTGATTCTATTGACGGGTCTTTCCATCAATGGAGAGACAAGCGTCCAGTTAAGTCTTTGGTTGTTGGAAGACCGATTCTGCTAGCACTTGAAGATATTGACGGAGGGCCATCTTTTCTTGAAAAAGCTCTTAGGTTTCTAGAGAAGCATGGAACTAAAGTTGAAGGAATACTGCGGCAATCTGCAGACGTTGAGGAAGTAGACCGCAGAGTTCAAGAATACGAACAAGGAAAGGTTGAGTTTGATGCAGAGGAAGATGCGCACGTTGTTGGTGACTGTGTTAAGCATGTTCTAAGGGAGCTTCCCTCCTCTCCAGTTCCAGCTTCATGCTGTACTGCTTTATTGGAGGCTTATAAAATTGATCGCAAGGAGGCTAGGATTAATGCAATGCGCTGTGCTATATTGGAAACTTTTCCAGAGCCAAATCGACGTTTGTTACAGAGAATTTTGAAGATGATGCACACAATTGCTTCTCATTCTAACGTGAATAGGATGACTGCTTCTGCTGTTGCTGCTTGCATGGCACCCTTGCTCTTACGGCCTCTGTTAGCTGGAGAATGTGAGCTGGAGGATGAATTTGATGTTAGTGGTGATAGCTCAGCTCAGCTTCTTGCCGCTGCTAATGCCGCAAATAACGCACAAGCAATAATTACCACTTTGTTGGAGGAGTATGAGAATGTATTTGATGAAGAAAATATACAGAGATGTTCCATTTCAGCTGATTCTCGAGTTGAAAACAGCGGGTCTGAAGATTCAACTGATGACGATAATATTGATGTAAAAGAAAATGGTTACCATGATGCAGAGAATGAAAATGATCAAGAGACAGATGATGATGCTGATCGTGTTCACAGTGGAAAATTAAGTGAAAGTAGTGGTTATGCTGGCAGTGATCTTTATGATTACAAGCAGGCATTTGGAGGAGATGATTCTGATGTTGGATCCTCTACTAGTAATCATGCTAAGGCTGAAAATTCAAATCTGAATGCTGTTCCTGATAACCATCTGTCTGAGGATAAAAGCAAGCAAAGAAAGGTCAATGAGAATGTAGTTGATGATGATCCACCAATTGTGTTGCCTTCCACAGAATCTTATCGTTCCATGGGTGAGATTTTATCTTCAATGGACCCTGGCAACCATTTACCTGTGATTGAAGCGCAATCAGGTTCTGGAAAGCAAACAACCGGTAAAGCTAGTAGTGGCACAAGCTTTAGTACTAAGCGGTCAACATTCTGGGGCAGGAGCAATCCGAGGAAGTCACCGTCAGTGGAATCGGTTGATTCTTCTGGAGAAGAGGAGCTTGCTATTCAGAGGCTAGAAATTGCAAAAAATGATTTGCAACATAGAATTGCAAAGGAGGCTAGAGGCAATGCTATTTTACAAGCAAGCTTAGAGAGAAGGAAACAAGCTTTGCATGAACGACGCTTGGCACTTGAACAAGATGTTTCAAGATTGCAAGAACAGTTGCAAGCTGAGAGGGATCTTAGAGCTGCATTGGAAGTTGGTTTGAGCATGTCTTCAGGACAGATTTCCAATTCACGTGGGATGGATTCAAAGACAAAGGCTGAGCTAGAGGAGATTGCACTTGCTGAAGCTGATGTGGCTAGGTTGAAGCAAAAGGTTGCAGAACTTCACCATCAACTTAATCAGCAAAGACAGCATCACTATGGTTCAGTTACAGACGTAGGTGATCGATACCAGCATGCCCAGAATCTTCCTCAACCGAGATTTCTTCAGCAAGATTTTGATTCAACCCTTGCATACTGTAATCATGAAAGGAAACAAAGGACTGAGGAGAGTGTGTTGGGCTCTGATTGGAGAAATATCAAAGGACAAGTATTGGCTTCTGGTAATGGTAGTAGGCAGCCATCTCGGAAGCCATTTATAGACTCGAGTCCTAGTGATTCAAAAAGCACCGAGGCATCGACAAGCATGTCTGTAGATGAGCTTGGTGTTGTTGATTCTGGCTCAGTGCCTTCCACTTCAAGGGCAGCAGAGGTGACAGAATATAATGGAAGACATCCGTCTGTAGCATCTTCAACATTAGTAGAGTTAACAACTCGTCTCGATTTTTTCAAGGAAAGGCGTTCGCAGTTGATGGAACAGCTTCATAACCTTGATTTGAACTATGGTTCTTCCACTTCCCAAGACATGGTTTACAAACCAACATCACCATCATGGAGTTGA
Protein sequence

>Msa0780700

MSASLAAFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSTLPQRGGEVNMTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEQALAQAPSAALVMGHNGIFRNDTTDSIDGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKHGTKVEGILRQSADVEEVDRRVQEYEQGKVEFDAEEDAHVVGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARINAMRCAILETFPEPNRRLLQRILKMMHTIASHSNVNRMTASAVAACMAPLLLRPLLAGECELEDEFDVSGDSSAQLLAAANAANNAQAIITTLLEEYENVFDEENIQRCSISADSRVENSGSEDSTDDDNIDVKENGYHDAENENDQETDDDADRVHSGKLSESSGYAGSDLYDYKQAFGGDDSDVGSSTSNHAKAENSNLNAVPDNHLSEDKSKQRKVNENVVDDDPPIVLPSTESYRSMGEILSSMDPGNHLPVIEAQSGSGKQTTGKASSGTSFSTKRSTFWGRSNPRKSPSVESVDSSGEEELAIQRLEIAKNDLQHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQISNSRGMDSKTKAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSVTDVGDRYQHAQNLPQPRFLQQDFDSTLAYCNHERKQRTEESVLGSDWRNIKGQVLASGNGSRQPSRKPFIDSSPSDSKSTEASTSMSVDELGVVDSGSVPSTSRAAEVTEYNGRHPSVASSTLVELTTRLDFFKERRSQLMEQLHNLDLNYGSSTSQDMVYKPTSPSWS*