Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783140 | XP_003616876.2 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783140 | sp|P93471|COP1_PEA | 89.490 | 314 | 26 | 2 | 1 | 314 | 1 | 307 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783140 | G7KH91 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0781900 | Msa0783140 | 0.804661 | 1.941008e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783140 | MtrunA17_Chr5g0438901 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783140 | AT2G32950.1 | 63.722 | 317 | 105 | 7 | 1 | 314 | 1 | 310 | 8.52e-136 | 400 |
| Msa0783140 | AT2G32950.2 | 63.243 | 185 | 60 | 5 | 132 | 314 | 19 | 197 | 5.66e-70 | 227 |
Find 84 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCTCCTCGAATATTTAA+AGG | 0.258388 | 5_2:+66877847 | None:intergenic |
| ATTCGAGGAGGGTTGTCTTC+AGG | 0.287880 | 5_2:-66877838 | Msa0783140:CDS |
| CCTCACAAACATCACATTCT+TGG | 0.308827 | 5_2:-66882244 | None:intergenic |
| TTGCGGATGCTTGATGATTC+TGG | 0.320860 | 5_2:-66877928 | Msa0783140:CDS |
| TCCGAATTTCTTACTCGATA+AGG | 0.355252 | 5_2:-66881835 | Msa0783140:intron |
| CACTGATGGGATCTCTTCTC+TGG | 0.356789 | 5_2:+66877758 | None:intergenic |
| GTCATGAAACACTTCTTTGC+TGG | 0.358252 | 5_2:+66877576 | None:intergenic |
| ATTCGGAAACAAATTACTAT+TGG | 0.363357 | 5_2:+66881851 | None:intergenic |
| TTCACAGTATATAAATCAAT+CGG | 0.394235 | 5_2:-66877728 | Msa0783140:CDS |
| TTCGAGGAGGGTTGTCTTCA+GGG | 0.403288 | 5_2:-66877837 | Msa0783140:CDS |
| CAATGTCCTCCTTTATGAAC+TGG | 0.413835 | 5_2:+66878010 | None:intergenic |
| AGTTCATAAAGGAGGACATT+GGG | 0.430648 | 5_2:-66878008 | Msa0783140:CDS |
| TGTGTATTATTACTCATCTT+CGG | 0.448436 | 5_2:-66881911 | Msa0783140:CDS |
| GACGCGTTTCTTACAGCTTG+TGG | 0.459464 | 5_2:-66881951 | Msa0783140:CDS |
| GGTTCGGGTTTGACGACGGC+GGG | 0.460222 | 5_2:+66882101 | None:intergenic |
| AACTGATCTCCAGTTCATAA+AGG | 0.467802 | 5_2:-66878019 | Msa0783140:CDS |
| TTGATAATCTGCATACAAAT+CGG | 0.468114 | 5_2:+66881975 | None:intergenic |
| ACCTTATCGAGTAAGAAATT+CGG | 0.468460 | 5_2:+66881834 | None:intergenic |
| ACCCTCCTCGAATATTTAAA+GGG | 0.470850 | 5_2:+66877848 | None:intergenic |
| AAAGGAGGACATTGGGGCCG+TGG | 0.471087 | 5_2:-66878001 | Msa0783140:CDS |
| AAGTCTCAAATCAGCTCTCA+TGG | 0.472937 | 5_2:-66877790 | Msa0783140:CDS |
| AAAATCATGGCATTCATCAA+TGG | 0.479333 | 5_2:-66877899 | Msa0783140:CDS |
| TCTCAGCAAGGAGTGACAAA+AGG | 0.479384 | 5_2:+66878498 | None:intergenic |
| GAAGAGAGGCGGGTTTAGAG+TGG | 0.490073 | 5_2:+66882209 | None:intergenic |
| GAAACAAATTACTATTGGTA+AGG | 0.495996 | 5_2:+66881856 | None:intergenic |
| GCCTGCCGGAAATGCTCCAC+GGG | 0.497681 | 5_2:+66880856 | None:intergenic |
| GTCACCGCCGGCGATGTCTC+CGG | 0.501444 | 5_2:+66882046 | None:intergenic |
| ACTTATATCGTGCTCGGGAT+CGG | 0.512625 | 5_2:-66877963 | Msa0783140:CDS |
| CAAATCAGCTCTCATGGACA+TGG | 0.515444 | 5_2:-66877784 | Msa0783140:CDS |
| TTTCCGGCAGGCGATACAAA+AGG | 0.515478 | 5_2:-66880845 | Msa0783140:intron |
| CTCAGCAAGGAGTGACAAAA+GGG | 0.516560 | 5_2:+66878499 | None:intergenic |
| GAATGGACTTATATCGTGCT+CGG | 0.518337 | 5_2:-66877969 | Msa0783140:CDS |
| CCCCGTGGAGCATTTCCGGC+AGG | 0.521449 | 5_2:-66880857 | Msa0783140:CDS |
| CGCCTGCCGGAAATGCTCCA+CGG | 0.524040 | 5_2:+66880855 | None:intergenic |
| CTGTGAATCTGATCCACTGA+TGG | 0.527140 | 5_2:+66877744 | None:intergenic |
| TCTAGCCCTTTAAATATTCG+AGG | 0.534972 | 5_2:-66877853 | Msa0783140:CDS |
| TCAACCACTGTAACCGTCAC+CGG | 0.538889 | 5_2:-66882065 | Msa0783140:CDS |
| GCCGGCGATGTCTCCGGTGA+CGG | 0.545405 | 5_2:+66882052 | None:intergenic |
| ACTCCGTCATAGTTGCGATC+GGG | 0.545526 | 5_2:+66882018 | None:intergenic |
| GCAAAGAAGTGTTTCATGAC+AGG | 0.546526 | 5_2:-66877573 | Msa0783140:CDS |
| AATGGACTTATATCGTGCTC+GGG | 0.547396 | 5_2:-66877968 | Msa0783140:CDS |
| TCACAGTATATAAATCAATC+GGG | 0.550556 | 5_2:-66877727 | Msa0783140:CDS |
| TGGTTCGGGTTTGACGACGG+CGG | 0.555209 | 5_2:+66882100 | None:intergenic |
| TCCGACGGAGTGTTCTTCCA+TGG | 0.556975 | 5_2:+66882133 | None:intergenic |
| GTGGTGATTTGAAGAGAGGC+GGG | 0.557151 | 5_2:+66882199 | None:intergenic |
| GCCCTTTAAATATTCGAGGA+GGG | 0.557638 | 5_2:-66877849 | Msa0783140:CDS |
| AACTCCGTCATAGTTGCGAT+CGG | 0.558278 | 5_2:+66882017 | None:intergenic |
| GGTGGTGATTTGAAGAGAGG+CGG | 0.561739 | 5_2:+66882198 | None:intergenic |
| ATCGGTACTCTGTGAAGTTG+CGG | 0.565158 | 5_2:-66877945 | Msa0783140:CDS |
| TTCTTCCATGGTGTGATGTG+AGG | 0.565405 | 5_2:+66882145 | None:intergenic |
| GGGTTTAGAGTGGAAGAAAG+TGG | 0.566440 | 5_2:+66882219 | None:intergenic |
| GGATGGTTCGGGTTTGACGA+CGG | 0.571721 | 5_2:+66882097 | None:intergenic |
| GGCCGTGGAGAAACATAGAA+TGG | 0.575022 | 5_2:-66877986 | Msa0783140:CDS |
| GGTTTAGAGTGGAAGAAAGT+GGG | 0.577268 | 5_2:+66882220 | None:intergenic |
| TATTTAAAGGGCTAGATGCA+AGG | 0.578156 | 5_2:+66877860 | None:intergenic |
| AAAGAAGAGGGTGCATACAC+AGG | 0.578452 | 5_2:-66877689 | Msa0783140:intron |
| TTGCTCTAGTTAGAAAGAAG+AGG | 0.582886 | 5_2:-66877702 | Msa0783140:CDS |
| TTTCCCGATCGCAACTATGA+CGG | 0.587012 | 5_2:-66882021 | Msa0783140:CDS |
| TGACGGTTACAGTGGTTGAG+AGG | 0.588518 | 5_2:+66882069 | None:intergenic |
| GTCTCCGGTGACGGTTACAG+TGG | 0.589298 | 5_2:+66882061 | None:intergenic |
| TTGACGACGGCGGGAACGAG+TGG | 0.591311 | 5_2:+66882110 | None:intergenic |
| GTCCATTCTATGTTTCTCCA+CGG | 0.592829 | 5_2:+66877984 | None:intergenic |
| ACCGTCACCGGAGACATCGC+CGG | 0.598356 | 5_2:-66882053 | Msa0783140:CDS |
| AGCCCTTTAAATATTCGAGG+AGG | 0.599877 | 5_2:-66877850 | Msa0783140:CDS |
| GGCGGGAACGAGTGGTCCGA+CGG | 0.601510 | 5_2:+66882118 | None:intergenic |
| TGCTCTAGTTAGAAAGAAGA+GGG | 0.610073 | 5_2:-66877701 | Msa0783140:CDS |
| ATTCTGGTGGAAGAAAATCA+TGG | 0.624185 | 5_2:-66877912 | Msa0783140:CDS |
| CGGATGCTTGATGATTCTGG+TGG | 0.629544 | 5_2:-66877925 | Msa0783140:CDS |
| CAGAGAAGAGATCCCATCAG+TGG | 0.630890 | 5_2:-66877757 | Msa0783140:CDS |
| GATCGGGAAATTGTCACCGC+CGG | 0.637351 | 5_2:+66882034 | None:intergenic |
| CAGTTCATAAAGGAGGACAT+TGG | 0.639000 | 5_2:-66878009 | Msa0783140:CDS |
| TGTGAATCTGATCCACTGAT+GGG | 0.640014 | 5_2:+66877745 | None:intergenic |
| TGATCTCCAGTTCATAAAGG+AGG | 0.645464 | 5_2:-66878016 | Msa0783140:CDS |
| TGTGGTGGTGATTTGAAGAG+AGG | 0.652326 | 5_2:+66882195 | None:intergenic |
| GTTCATAAAGGAGGACATTG+GGG | 0.653194 | 5_2:-66878007 | Msa0783140:CDS |
| GGGTTGTGAAGTGACAATGA+AGG | 0.664179 | 5_2:-66878531 | Msa0783140:CDS |
| ACCATGGAAGAACACTCCGT+CGG | 0.669086 | 5_2:-66882134 | Msa0783140:CDS |
| TCAATGGACAAGAATAGCAG+TGG | 0.671034 | 5_2:-66877883 | Msa0783140:CDS |
| AAAAGTGATTGTCCTTGCTG+TGG | 0.679991 | 5_2:-66881885 | Msa0783140:CDS |
| AAAAGTTGATGAGTTGAAGG+AGG | 0.690590 | 5_2:-66878396 | Msa0783140:intron |
| GTAAGGTAATGACCACAGCA+AGG | 0.699689 | 5_2:+66881873 | None:intergenic |
| CCTGCCGGAAATGCTCCACG+GGG | 0.700061 | 5_2:+66880857 | None:intergenic |
| GTCACCGGAGACATCGCCGG+CGG | 0.708970 | 5_2:-66882050 | Msa0783140:CDS |
| CTGCCGGAAATGCTCCACGG+GGG | 0.738551 | 5_2:+66880858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATAAGTTTTTTTTTC+CGG | - | chr5_2:66878621-66878640 | Msa0783140:intron | 15.0% |
| !! | GAATTATATTAATGATTTAG+TGG | + | chr5_2:66879493-66879512 | None:intergenic | 15.0% |
| !!! | GAATTTTTTGTTTTGTTAAT+TGG | - | chr5_2:66879928-66879947 | Msa0783140:intron | 15.0% |
| !!! | TGTTTTAAATTTTTTCCTTT+AGG | + | chr5_2:66880655-66880674 | None:intergenic | 15.0% |
| !!! | TGTCTAATTTATTTTATGAA+AGG | - | chr5_2:66881057-66881076 | Msa0783140:intron | 15.0% |
| !!! | GTCTAATTTATTTTATGAAA+GGG | - | chr5_2:66881058-66881077 | Msa0783140:intron | 15.0% |
| !! | TTGTAATTATTAATAGAATC+AGG | - | chr5_2:66881587-66881606 | Msa0783140:intron | 15.0% |
| !!! | ATTTTTTATTTTATGTGCAT+TGG | - | chr5_2:66882158-66882177 | Msa0783140:five_prime_UTR | 15.0% |
| !!! | ATTGGTTTTTGAAATTTTAA+TGG | - | chr5_2:66882176-66882195 | Msa0783140:five_prime_UTR | 15.0% |
| !!! | CATTTTGAATTGTGATATTT+TGG | - | chr5_2:66878479-66878498 | Msa0783140:CDS | 20.0% |
| !! | AAAACTTATATCAGTATGTA+AGG | + | chr5_2:66878559-66878578 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGTAAGTATGTT+TGG | - | chr5_2:66878570-66878589 | Msa0783140:intron | 20.0% |
| !!! | TAAGTTTTGTAAGTATGTTT+GGG | - | chr5_2:66878571-66878590 | Msa0783140:intron | 20.0% |
| !!! | TCCATTTTTCAAATTATTAC+CGG | - | chr5_2:66879221-66879240 | Msa0783140:intron | 20.0% |
| !! | TGGGTCAAAAAAAAAAAAAA+AGG | + | chr5_2:66879631-66879650 | None:intergenic | 20.0% |
| !!! | TTGTTTTCCAATTATTGATA+TGG | + | chr5_2:66880484-66880503 | None:intergenic | 20.0% |
| !!! | TAAATTTTTTCCTTTAGGTT+TGG | + | chr5_2:66880650-66880669 | None:intergenic | 20.0% |
| !!! | AATTTTTTGAATCTTGAAAC+AGG | - | chr5_2:66881243-66881262 | Msa0783140:intron | 20.0% |
| !!! | ATTTTTTGAATCTTGAAACA+GGG | - | chr5_2:66881244-66881263 | Msa0783140:intron | 20.0% |
| !! | TTCACAGTATATAAATCAAT+CGG | - | chr5_2:66882067-66882086 | Msa0783140:CDS | 20.0% |
| !! | TTGATAATCTGCATACAAAT+CGG | + | chr5_2:66877823-66877842 | None:intergenic | 25.0% |
| ! | TGTGTATTATTACTCATCTT+CGG | - | chr5_2:66877884-66877903 | Msa0783140:CDS | 25.0% |
| ! | GAAACAAATTACTATTGGTA+AGG | + | chr5_2:66877942-66877961 | None:intergenic | 25.0% |
| ! | ATTCGGAAACAAATTACTAT+TGG | + | chr5_2:66877947-66877966 | None:intergenic | 25.0% |
| ! | GCAAATTATCAATTAAACAC+TGG | + | chr5_2:66878051-66878070 | None:intergenic | 25.0% |
| !!! | CGTTTTGAATTGTGATATTT+CGG | - | chr5_2:66878070-66878089 | Msa0783140:intron | 25.0% |
| ! | AAGATTTAAGAAACTACTTG+AGG | - | chr5_2:66878120-66878139 | Msa0783140:intron | 25.0% |
| ! | TCCATACATATGAATGAATT+CGG | - | chr5_2:66878409-66878428 | Msa0783140:CDS | 25.0% |
| !!! | GAATTGTGATATTTTGGTTT+TGG | - | chr5_2:66878485-66878504 | Msa0783140:CDS | 25.0% |
| !!! | GCTTGTTTTATGAATGAATT+CGG | - | chr5_2:66878832-66878851 | Msa0783140:intron | 25.0% |
| !!! | CTTTTTTAGTAGCTACAAAT+TGG | + | chr5_2:66878886-66878905 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGAGTACAATG+TGG | - | chr5_2:66879100-66879119 | Msa0783140:intron | 25.0% |
| !!! | TTTTTTGATGAAGCAATAGT+AGG | - | chr5_2:66879444-66879463 | Msa0783140:intron | 25.0% |
| ! | ATTGAGAACAGTGTTAAAAT+GGG | + | chr5_2:66879603-66879622 | None:intergenic | 25.0% |
| ! | TATTGAGAACAGTGTTAAAA+TGG | + | chr5_2:66879604-66879623 | None:intergenic | 25.0% |
| !! | GATAATATTTGAAACATCAC+CGG | - | chr5_2:66879755-66879774 | Msa0783140:intron | 25.0% |
| !! | TGATAACATTACCATAGTTT+TGG | - | chr5_2:66879842-66879861 | Msa0783140:intron | 25.0% |
| ! | TCTTAAAAAGACCAAAACTA+TGG | + | chr5_2:66879856-66879875 | None:intergenic | 25.0% |
| ! | AGAGGATTATATAAAACAGT+AGG | - | chr5_2:66880313-66880332 | Msa0783140:intron | 25.0% |
| ! | TTTCCAATTATTGATATGGA+CGG | + | chr5_2:66880480-66880499 | None:intergenic | 25.0% |
| ! | ATTCAACAAAGCTAATAAAC+AGG | + | chr5_2:66881106-66881125 | None:intergenic | 25.0% |
| ! | TAGAGTAATATTCAGTACAA+AGG | + | chr5_2:66881137-66881156 | None:intergenic | 25.0% |
| ! | ATTCAGTAACTAAGTCTATT+TGG | - | chr5_2:66881540-66881559 | Msa0783140:intron | 25.0% |
| !!! | TTCCATCATTTTTCTTAGTA+TGG | + | chr5_2:66881986-66882005 | None:intergenic | 25.0% |
| ! | TCACAGTATATAAATCAATC+GGG | - | chr5_2:66882068-66882087 | Msa0783140:CDS | 25.0% |
| ACCTTATCGAGTAAGAAATT+CGG | + | chr5_2:66877964-66877983 | None:intergenic | 30.0% | |
| ! | GAATTGTGATATTTCGGTTT+TGG | - | chr5_2:66878076-66878095 | Msa0783140:intron | 30.0% |
| !!! | GCTGTTTTCATTTGCTATAT+TGG | + | chr5_2:66878272-66878291 | None:intergenic | 30.0% |
| AGATTAGATTTATGCCTGTT+TGG | - | chr5_2:66878519-66878538 | Msa0783140:CDS | 30.0% | |
| GAGAGCTTATTAAAATAAGC+CGG | + | chr5_2:66878643-66878662 | None:intergenic | 30.0% | |
| !! | TGCTATTTCCATAAGCTATA+TGG | + | chr5_2:66878665-66878684 | None:intergenic | 30.0% |
| AACAAGATCAACAACAACAA+AGG | + | chr5_2:66879032-66879051 | None:intergenic | 30.0% | |
| GCCGGTAATAATTTGAAAAA+TGG | + | chr5_2:66879225-66879244 | None:intergenic | 30.0% | |
| !!! | GAAATTTTGAAGTTCCAGAA+AGG | - | chr5_2:66879518-66879537 | Msa0783140:intron | 30.0% |
| !! | TATGTAAGTTTTGTCCTTTC+TGG | + | chr5_2:66879535-66879554 | None:intergenic | 30.0% |
| !! | TTTTAAGAGTAGTTTCCTTC+TGG | - | chr5_2:66879868-66879887 | Msa0783140:intron | 30.0% |
| !! | TACACGTGTCTATTTCTAAT+TGG | - | chr5_2:66880086-66880105 | Msa0783140:intron | 30.0% |
| AACAGTAAAAACAGTACCTA+TGG | - | chr5_2:66880111-66880130 | Msa0783140:intron | 30.0% | |
| AAACTTACATACAGTACCAT+AGG | + | chr5_2:66879544-66879563 | None:intergenic | 30.0% | |
| ! | TTCTCTTTCGTTATCTTTTC+TGG | + | chr5_2:66880160-66880179 | None:intergenic | 30.0% |
| ! | AGCCTCTAATCTAAAGTTTA+GGG | - | chr5_2:66880205-66880224 | Msa0783140:intron | 30.0% |
| TATTTCCTCTTACAAGAAAC+TGG | + | chr5_2:66880256-66880275 | None:intergenic | 30.0% | |
| AGGTGTTAGATCAAAGTATA+TGG | - | chr5_2:66880333-66880352 | Msa0783140:intron | 30.0% | |
| ! | AATAAACTCTAAAAGCCAGT+CGG | + | chr5_2:66880440-66880459 | None:intergenic | 30.0% |
| AGGAAAAATGATGCAAATTG+TGG | + | chr5_2:66880591-66880610 | None:intergenic | 30.0% | |
| CTGGATACATTCAAAAATCA+AGG | + | chr5_2:66880812-66880831 | None:intergenic | 30.0% | |
| TACTTATTGTGGTTAAGTGA+AGG | + | chr5_2:66880840-66880859 | None:intergenic | 30.0% | |
| ! | TTTTCGTTCAGAAAACTACA+CGG | + | chr5_2:66880897-66880916 | None:intergenic | 30.0% |
| GAAAATCTATCAGAATCCAA+TGG | - | chr5_2:66880912-66880931 | Msa0783140:intron | 30.0% | |
| ! | TGTGTTATTGTGAGAGATTA+GGG | + | chr5_2:66880951-66880970 | None:intergenic | 30.0% |
| ! | TTGTGTTATTGTGAGAGATT+AGG | + | chr5_2:66880952-66880971 | None:intergenic | 30.0% |
| ATAAATTTGCGAGAATCAAG+AGG | + | chr5_2:66880976-66880995 | None:intergenic | 30.0% | |
| ! | TTTTTCTTTTCTTCTCAGCA+AGG | + | chr5_2:66881312-66881331 | None:intergenic | 30.0% |
| TGCTGAGAAGAAAAGAAAAA+TGG | - | chr5_2:66881312-66881331 | Msa0783140:intron | 30.0% | |
| AAAGAAAAAATGGAAACGCA+TGG | + | chr5_2:66881656-66881675 | None:intergenic | 30.0% | |
| ! | TGCTACTTATTGCAATCAAT+TGG | - | chr5_2:66881734-66881753 | Msa0783140:intron | 30.0% |
| ! | TCAATTGGTGTTTCATACAT+AGG | - | chr5_2:66881749-66881768 | Msa0783140:intron | 30.0% |
| AAAATCATGGCATTCATCAA+TGG | - | chr5_2:66881896-66881915 | Msa0783140:CDS | 30.0% | |
| AGCCATACTAAGAAAAATGA+TGG | - | chr5_2:66881981-66882000 | Msa0783140:CDS | 30.0% | |
| !! | CTTGTTTAATTTTCTGTGCT+TGG | - | chr5_2:66882134-66882153 | Msa0783140:CDS | 30.0% |
| !!! | GTGAGGTTTTTGAGATGAAA+TGG | + | chr5_2:66877636-66877655 | None:intergenic | 35.0% |
| TCCGAATTTCTTACTCGATA+AGG | - | chr5_2:66877960-66877979 | Msa0783140:CDS | 35.0% | |
| AAAGAACACATGAACACGAA+TGG | + | chr5_2:66878008-66878027 | None:intergenic | 35.0% | |
| GCCGAATTCATTCATATGTA+TGG | + | chr5_2:66878413-66878432 | None:intergenic | 35.0% | |
| AGATTTATGCCTGTTTGGAT+TGG | - | chr5_2:66878524-66878543 | Msa0783140:CDS | 35.0% | |
| TAAGCTCTCCATATAGCTTA+TGG | - | chr5_2:66878654-66878673 | Msa0783140:intron | 35.0% | |
| !! | GGTTTCTAGCTCATTGTTAA+CGG | - | chr5_2:66878853-66878872 | Msa0783140:intron | 35.0% |
| GTAGCTACTAAAAAAGACGT+CGG | - | chr5_2:66878890-66878909 | Msa0783140:intron | 35.0% | |
| !! | TGCACTCTTGTTTCTTGTTT+TGG | - | chr5_2:66878978-66878997 | Msa0783140:intron | 35.0% |
| !!! | TTGGTTTGCAGTTTGTTTTG+TGG | - | chr5_2:66878997-66879016 | Msa0783140:intron | 35.0% |
| CCTATGTAACATCTGCATTT+CGG | - | chr5_2:66879132-66879151 | Msa0783140:intron | 35.0% | |
| CATACATGTTGTGTCAGTAT+CGG | + | chr5_2:66879183-66879202 | None:intergenic | 35.0% | |
| ATACTGACACAACATGTATG+TGG | - | chr5_2:66879183-66879202 | Msa0783140:intron | 35.0% | |
| GTCAGTATAATTGTCGTATC+CGG | - | chr5_2:66879253-66879272 | Msa0783140:intron | 35.0% | |
| ! | AGTACAATGAAGCACTAACA+CGG | + | chr5_2:66879282-66879301 | None:intergenic | 35.0% |
| TGTTAGTGCTTCATTGTACT+TGG | - | chr5_2:66879282-66879301 | Msa0783140:intron | 35.0% | |
| ACGATATGTATGGGTTTAAC+AGG | - | chr5_2:66879306-66879325 | Msa0783140:intron | 35.0% | |
| CGATATGTATGGGTTTAACA+GGG | - | chr5_2:66879307-66879326 | Msa0783140:intron | 35.0% | |
| GATATGTATGGGTTTAACAG+GGG | - | chr5_2:66879308-66879327 | Msa0783140:intron | 35.0% | |
| ACAGTTAGCATGGTAAACAA+AGG | + | chr5_2:66879374-66879393 | None:intergenic | 35.0% | |
| ! | GAGGTATTTGTTGCAATTGT+AGG | - | chr5_2:66879404-66879423 | Msa0783140:intron | 35.0% |
| CTTAGACAGAGAATGAAGAA+GGG | + | chr5_2:66879688-66879707 | None:intergenic | 35.0% | |
| TCTTAGACAGAGAATGAAGA+AGG | + | chr5_2:66879689-66879708 | None:intergenic | 35.0% | |
| ATTATCATCCATCCACAAGA+AGG | + | chr5_2:66879741-66879760 | None:intergenic | 35.0% | |
| ! | AATATTTGAAACATCACCGG+AGG | - | chr5_2:66879758-66879777 | Msa0783140:intron | 35.0% |
| AAGTTTAACGCTGTTAACAC+TGG | + | chr5_2:66880053-66880072 | None:intergenic | 35.0% | |
| ! | CTTTCGTTATCTTTTCTGGA+AGG | + | chr5_2:66880156-66880175 | None:intergenic | 35.0% |
| ! | CAGCCTCTAATCTAAAGTTT+AGG | - | chr5_2:66880204-66880223 | Msa0783140:intron | 35.0% |
| ! | GCCTCTAATCTAAAGTTTAG+GGG | - | chr5_2:66880206-66880225 | Msa0783140:intron | 35.0% |
| TCCCCTAAACTTTAGATTAG+AGG | + | chr5_2:66880210-66880229 | None:intergenic | 35.0% | |
| ! | TCTAATCTAAAGTTTAGGGG+AGG | - | chr5_2:66880209-66880228 | Msa0783140:intron | 35.0% |
| CAATTATTGATATGGACGGT+CGG | + | chr5_2:66880476-66880495 | None:intergenic | 35.0% | |
| !!! | ATTTTGAAGCCTAATGTGAG+TGG | - | chr5_2:66880507-66880526 | Msa0783140:intron | 35.0% |
| ! | TCCATCATTTTCTGTTCCAA+TGG | - | chr5_2:66880539-66880558 | Msa0783140:intron | 35.0% |
| TCCATTGGAACAGAAAATGA+TGG | + | chr5_2:66880543-66880562 | None:intergenic | 35.0% | |
| ! | TATGAGATGCACTTTTCCAT+TGG | + | chr5_2:66880558-66880577 | None:intergenic | 35.0% |
| TCAAACATGAAAGAGGGTAA+AGG | + | chr5_2:66880611-66880630 | None:intergenic | 35.0% | |
| TCTGTGTCAAACATGAAAGA+GGG | + | chr5_2:66880617-66880636 | None:intergenic | 35.0% | |
| ACAAAAAAAACCGTGCATAG+TGG | - | chr5_2:66880677-66880696 | Msa0783140:intron | 35.0% | |
| CAAAAAAAACCGTGCATAGT+GGG | - | chr5_2:66880678-66880697 | Msa0783140:intron | 35.0% | |
| ! | GTGTTATTGTGAGAGATTAG+GGG | + | chr5_2:66880950-66880969 | None:intergenic | 35.0% |
| GTGTATATGCTACTAGATCA+AGG | - | chr5_2:66880997-66881016 | Msa0783140:intron | 35.0% | |
| !! | GCAAAAAGTTGATGAGTTGA+AGG | - | chr5_2:66881396-66881415 | Msa0783140:intron | 35.0% |
| !! | AAAAGTTGATGAGTTGAAGG+AGG | - | chr5_2:66881399-66881418 | Msa0783140:intron | 35.0% |
| AACTGATCTCCAGTTCATAA+AGG | - | chr5_2:66881776-66881795 | Msa0783140:intron | 35.0% | |
| AGTTCATAAAGGAGGACATT+GGG | - | chr5_2:66881787-66881806 | Msa0783140:intron | 35.0% | |
| ATTCTGGTGGAAGAAAATCA+TGG | - | chr5_2:66881883-66881902 | Msa0783140:CDS | 35.0% | |
| TATTTAAAGGGCTAGATGCA+AGG | + | chr5_2:66881938-66881957 | None:intergenic | 35.0% | |
| TCTAGCCCTTTAAATATTCG+AGG | - | chr5_2:66881942-66881961 | Msa0783140:CDS | 35.0% | |
| ACCCTCCTCGAATATTTAAA+GGG | + | chr5_2:66881950-66881969 | None:intergenic | 35.0% | |
| AACCCTCCTCGAATATTTAA+AGG | + | chr5_2:66881951-66881970 | None:intergenic | 35.0% | |
| TTGCTCTAGTTAGAAAGAAG+AGG | - | chr5_2:66882093-66882112 | Msa0783140:CDS | 35.0% | |
| TGCTCTAGTTAGAAAGAAGA+GGG | - | chr5_2:66882094-66882113 | Msa0783140:CDS | 35.0% | |
| ! | GGTTTAGAGTGGAAGAAAGT+GGG | + | chr5_2:66877578-66877597 | None:intergenic | 40.0% |
| !!! | TGAAATGGTTTTGATGCGTG+TGG | + | chr5_2:66877621-66877640 | None:intergenic | 40.0% |
| AAAAACCTCACATCACACCA+TGG | - | chr5_2:66877645-66877664 | Msa0783140:intron | 40.0% | |
| !! | TGAGAGGTTTTTGGATGGTT+CGG | + | chr5_2:66877713-66877732 | None:intergenic | 40.0% |
| ! | TACAGTGGTTGAGAGGTTTT+TGG | + | chr5_2:66877722-66877741 | None:intergenic | 40.0% |
| AAAAGTGATTGTCCTTGCTG+TGG | - | chr5_2:66877910-66877929 | Msa0783140:CDS | 40.0% | |
| GAAACTACTTGAGGTCTGTT+TGG | - | chr5_2:66878129-66878148 | Msa0783140:intron | 40.0% | |
| TAAGCACTTGTGAGATTGCT+TGG | - | chr5_2:66878181-66878200 | Msa0783140:intron | 40.0% | |
| TCAGATAAGCCAATCCAAAC+AGG | + | chr5_2:66878536-66878555 | None:intergenic | 40.0% | |
| ! | CAAGCAATTTTCTGAGCGTT+AGG | + | chr5_2:66878817-66878836 | None:intergenic | 40.0% |
| CCGAAATGCAGATGTTACAT+AGG | + | chr5_2:66879135-66879154 | None:intergenic | 40.0% | |
| TTATACTGACACATAGACGC+CGG | + | chr5_2:66879243-66879262 | None:intergenic | 40.0% | |
| TGTACTTGGCACGATATGTA+TGG | - | chr5_2:66879296-66879315 | Msa0783140:intron | 40.0% | |
| GTACTTGGCACGATATGTAT+GGG | - | chr5_2:66879297-66879316 | Msa0783140:intron | 40.0% | |
| TCACTGTTGTACAGTTAGCA+TGG | + | chr5_2:66879384-66879403 | None:intergenic | 40.0% | |
| AACATGAACTGCGCAATCAA+CGG | + | chr5_2:66879470-66879489 | None:intergenic | 40.0% | |
| !! | TGTCTAGTTCTAACTGGCTA+TGG | + | chr5_2:66879563-66879582 | None:intergenic | 40.0% |
| !! | TACACGTGTCTAGTTCTAAC+TGG | + | chr5_2:66879569-66879588 | None:intergenic | 40.0% |
| CAGAGAGAGAATAGAGAAGT+GGG | + | chr5_2:66879650-66879669 | None:intergenic | 40.0% | |
| !! | TCAATGTGTCACTTTCCAGA+AGG | + | chr5_2:66879886-66879905 | None:intergenic | 40.0% |
| TCACGAAGAATGCATCTCAT+AGG | - | chr5_2:66879960-66879979 | Msa0783140:intron | 40.0% | |
| TAGATTAGAGGCTGAGAACA+GGG | + | chr5_2:66880198-66880217 | None:intergenic | 40.0% | |
| TTAGATTAGAGGCTGAGAAC+AGG | + | chr5_2:66880199-66880218 | None:intergenic | 40.0% | |
| ACGTCAATTCATTTGTCGAG+AGG | - | chr5_2:66880295-66880314 | Msa0783140:intron | 40.0% | |
| CGACCGTCCATATCAATAAT+TGG | - | chr5_2:66880474-66880493 | Msa0783140:intron | 40.0% | |
| GTCTGTGTCAAACATGAAAG+AGG | + | chr5_2:66880618-66880637 | None:intergenic | 40.0% | |
| CAGTACAGAACCAAACCTAA+AGG | - | chr5_2:66880637-66880656 | Msa0783140:intron | 40.0% | |
| GTAACAAAACCCACTATGCA+CGG | + | chr5_2:66880690-66880709 | None:intergenic | 40.0% | |
| !!! | GTGCATAGTGGGTTTTGTTA+CGG | - | chr5_2:66880689-66880708 | Msa0783140:intron | 40.0% |
| !!! | TGCATAGTGGGTTTTGTTAC+GGG | - | chr5_2:66880690-66880709 | Msa0783140:intron | 40.0% |
| TCGTGATTGTGAATCTGGTT+GGG | - | chr5_2:66880756-66880775 | Msa0783140:intron | 40.0% | |
| TGTGAATCTGGTTGGGTTAT+TGG | - | chr5_2:66880763-66880782 | Msa0783140:intron | 40.0% | |
| CACTGGTGTTCTACTTATTG+TGG | + | chr5_2:66880851-66880870 | None:intergenic | 40.0% | |
| TTGTGAGAGATTAGGGGAAT+GGG | + | chr5_2:66880944-66880963 | None:intergenic | 40.0% | |
| ATTGTGAGAGATTAGGGGAA+TGG | + | chr5_2:66880945-66880964 | None:intergenic | 40.0% | |
| ATCCTTGTTGATGCTTCAGT+TGG | - | chr5_2:66881196-66881215 | Msa0783140:intron | 40.0% | |
| GCATGGAGTAAGGACTTATT+TGG | + | chr5_2:66881639-66881658 | None:intergenic | 40.0% | |
| AAATGGAAACGCATGGAGTA+AGG | + | chr5_2:66881649-66881668 | None:intergenic | 40.0% | |
| CAGACAGCGGAAAGAAAAAA+TGG | + | chr5_2:66881666-66881685 | None:intergenic | 40.0% | |
| GAGGTGGTCTTTATTGTACT+AGG | - | chr5_2:66881689-66881708 | Msa0783140:intron | 40.0% | |
| TGATCTCCAGTTCATAAAGG+AGG | - | chr5_2:66881779-66881798 | Msa0783140:intron | 40.0% | |
| CAATGTCCTCCTTTATGAAC+TGG | + | chr5_2:66881788-66881807 | None:intergenic | 40.0% | |
| CAGTTCATAAAGGAGGACAT+TGG | - | chr5_2:66881786-66881805 | Msa0783140:intron | 40.0% | |
| GTTCATAAAGGAGGACATTG+GGG | - | chr5_2:66881788-66881807 | Msa0783140:intron | 40.0% | |
| GTCCATTCTATGTTTCTCCA+CGG | + | chr5_2:66881814-66881833 | None:intergenic | 40.0% | |
| ! | GAATGGACTTATATCGTGCT+CGG | - | chr5_2:66881826-66881845 | Msa0783140:intron | 40.0% |
| ! | AATGGACTTATATCGTGCTC+GGG | - | chr5_2:66881827-66881846 | Msa0783140:intron | 40.0% |
| TCAATGGACAAGAATAGCAG+TGG | - | chr5_2:66881912-66881931 | Msa0783140:CDS | 40.0% | |
| AGCCCTTTAAATATTCGAGG+AGG | - | chr5_2:66881945-66881964 | Msa0783140:CDS | 40.0% | |
| GCCCTTTAAATATTCGAGGA+GGG | - | chr5_2:66881946-66881965 | Msa0783140:CDS | 40.0% | |
| AAGTCTCAAATCAGCTCTCA+TGG | - | chr5_2:66882005-66882024 | Msa0783140:CDS | 40.0% | |
| TGTGAATCTGATCCACTGAT+GGG | + | chr5_2:66882053-66882072 | None:intergenic | 40.0% | |
| GTCATGAAACACTTCTTTGC+TGG | + | chr5_2:66882222-66882241 | None:intergenic | 40.0% | |
| !! | GCAAAGAAGTGTTTCATGAC+AGG | - | chr5_2:66882222-66882241 | Msa0783140:five_prime_UTR | 40.0% |
| ! | GGGTTTAGAGTGGAAGAAAG+TGG | + | chr5_2:66877579-66877598 | None:intergenic | 45.0% |
| ! | TGTGGTGGTGATTTGAAGAG+AGG | + | chr5_2:66877603-66877622 | None:intergenic | 45.0% |
| !!! | AATGGTTTTGATGCGTGTGG+TGG | + | chr5_2:66877618-66877637 | None:intergenic | 45.0% |
| TTCTTCCATGGTGTGATGTG+AGG | + | chr5_2:66877653-66877672 | None:intergenic | 45.0% | |
| !! | GAGAGGTTTTTGGATGGTTC+GGG | + | chr5_2:66877712-66877731 | None:intergenic | 45.0% |
| !! | GTGGTTGAGAGGTTTTTGGA+TGG | + | chr5_2:66877718-66877737 | None:intergenic | 45.0% |
| TTTCCCGATCGCAACTATGA+CGG | - | chr5_2:66877774-66877793 | Msa0783140:CDS | 45.0% | |
| AACTCCGTCATAGTTGCGAT+CGG | + | chr5_2:66877781-66877800 | None:intergenic | 45.0% | |
| GTAAGGTAATGACCACAGCA+AGG | + | chr5_2:66877925-66877944 | None:intergenic | 45.0% | |
| AACATCTGCATTTCGGAGTC+CGG | - | chr5_2:66879139-66879158 | Msa0783140:intron | 45.0% | |
| GATACAGACGTGTCATACAC+CGG | + | chr5_2:66879161-66879180 | None:intergenic | 45.0% | |
| ATGTATGGGTTTAACAGGGG+TGG | - | chr5_2:66879311-66879330 | Msa0783140:intron | 45.0% | |
| CAGGGGTGGTTAAACAAAAC+TGG | - | chr5_2:66879325-66879344 | Msa0783140:intron | 45.0% | |
| GCTAACTGTACAACAGTGAG+AGG | - | chr5_2:66879385-66879404 | Msa0783140:intron | 45.0% | |
| GCAGAGAGAGAATAGAGAAG+TGG | + | chr5_2:66879651-66879670 | None:intergenic | 45.0% | |
| CAGAGAATGAAGAAGGGCAA+GGG | + | chr5_2:66879682-66879701 | None:intergenic | 45.0% | |
| ACAGAGAATGAAGAAGGGCA+AGG | + | chr5_2:66879683-66879702 | None:intergenic | 45.0% | |
| TCGAGATCCTTTCCTTCTTG+TGG | - | chr5_2:66879726-66879745 | Msa0783140:intron | 45.0% | |
| GATCCTTTCCTTCTTGTGGA+TGG | - | chr5_2:66879730-66879749 | Msa0783140:intron | 45.0% | |
| CATCCATCCACAAGAAGGAA+AGG | + | chr5_2:66879736-66879755 | None:intergenic | 45.0% | |
| CCGGCATGATAATAAACCTC+CGG | + | chr5_2:66879777-66879796 | None:intergenic | 45.0% | |
| CCGGAGGTTTATTATCATGC+CGG | - | chr5_2:66879774-66879793 | Msa0783140:intron | 45.0% | |
| AGGTTTATTATCATGCCGGC+AGG | - | chr5_2:66879778-66879797 | Msa0783140:intron | 45.0% | |
| CCTCTGAATTGTATTCCTGC+CGG | + | chr5_2:66879796-66879815 | None:intergenic | 45.0% | |
| CGGCAGGAATACAATTCAGA+GGG | - | chr5_2:66879794-66879813 | Msa0783140:intron | 45.0% | |
| GGCAGGAATACAATTCAGAG+GGG | - | chr5_2:66879795-66879814 | Msa0783140:intron | 45.0% | |
| ! | CAAGGCTTGCTCTAGATTGA+AGG | + | chr5_2:66879997-66880016 | None:intergenic | 45.0% |
| AGATTAGAGGCTGAGAACAG+GGG | + | chr5_2:66880197-66880216 | None:intergenic | 45.0% | |
| TTACAAGAAACTGGCACTGC+AGG | + | chr5_2:66880247-66880266 | None:intergenic | 45.0% | |
| CAGTGCCAGTTTCTTGTAAG+AGG | - | chr5_2:66880248-66880267 | Msa0783140:intron | 45.0% | |
| GGAGGAGAAAAAAGTCGCAT+GGG | + | chr5_2:66880397-66880416 | None:intergenic | 45.0% | |
| AGGAGGAGAAAAAAGTCGCA+TGG | + | chr5_2:66880398-66880417 | None:intergenic | 45.0% | |
| CCTTGTTCTCCACTCACATT+AGG | + | chr5_2:66880519-66880538 | None:intergenic | 45.0% | |
| CCTAATGTGAGTGGAGAACA+AGG | - | chr5_2:66880516-66880535 | Msa0783140:intron | 45.0% | |
| !!! | GCATAGTGGGTTTTGTTACG+GGG | - | chr5_2:66880691-66880710 | Msa0783140:intron | 45.0% |
| AATTGCGAGTGGTGAGTTCT+TGG | - | chr5_2:66880724-66880743 | Msa0783140:intron | 45.0% | |
| TGTGCTCGTGATTGTGAATC+TGG | - | chr5_2:66880751-66880770 | Msa0783140:intron | 45.0% | |
| CTCGTGATTGTGAATCTGGT+TGG | - | chr5_2:66880755-66880774 | Msa0783140:intron | 45.0% | |
| ! | TGGTTAAGTGAAGGTGTGTC+TGG | + | chr5_2:66880831-66880850 | None:intergenic | 45.0% |
| ACTACACGGAGTTGTCAGAA+TGG | + | chr5_2:66880883-66880902 | None:intergenic | 45.0% | |
| ! | GACCAACTGAAGCATCAACA+AGG | + | chr5_2:66881201-66881220 | None:intergenic | 45.0% |
| GGGTTGTGAAGTGACAATGA+AGG | - | chr5_2:66881264-66881283 | Msa0783140:intron | 45.0% | |
| CTCAGCAAGGAGTGACAAAA+GGG | + | chr5_2:66881299-66881318 | None:intergenic | 45.0% | |
| TCTCAGCAAGGAGTGACAAA+AGG | + | chr5_2:66881300-66881319 | None:intergenic | 45.0% | |
| TTCTTTCCGCTGTCTGTATG+AGG | - | chr5_2:66881670-66881689 | Msa0783140:intron | 45.0% | |
| ACTTATATCGTGCTCGGGAT+CGG | - | chr5_2:66881832-66881851 | Msa0783140:intron | 45.0% | |
| ATCGGTACTCTGTGAAGTTG+CGG | - | chr5_2:66881850-66881869 | Msa0783140:CDS | 45.0% | |
| ! | TTGCGGATGCTTGATGATTC+TGG | - | chr5_2:66881867-66881886 | Msa0783140:CDS | 45.0% |
| CAAATCAGCTCTCATGGACA+TGG | - | chr5_2:66882011-66882030 | Msa0783140:CDS | 45.0% | |
| CTGTGAATCTGATCCACTGA+TGG | + | chr5_2:66882054-66882073 | None:intergenic | 45.0% | |
| ! | AAAGAAGAGGGTGCATACAC+AGG | - | chr5_2:66882106-66882125 | Msa0783140:CDS | 45.0% |
| GTGGTGATTTGAAGAGAGGC+GGG | + | chr5_2:66877599-66877618 | None:intergenic | 50.0% | |
| GGTGGTGATTTGAAGAGAGG+CGG | + | chr5_2:66877600-66877619 | None:intergenic | 50.0% | |
| ACCATGGAAGAACACTCCGT+CGG | - | chr5_2:66877661-66877680 | Msa0783140:intron | 50.0% | |
| TGACGGTTACAGTGGTTGAG+AGG | + | chr5_2:66877729-66877748 | None:intergenic | 50.0% | |
| TCAACCACTGTAACCGTCAC+CGG | - | chr5_2:66877730-66877749 | Msa0783140:CDS | 50.0% | |
| ACTCCGTCATAGTTGCGATC+GGG | + | chr5_2:66877780-66877799 | None:intergenic | 50.0% | |
| GACGCGTTTCTTACAGCTTG+TGG | - | chr5_2:66877844-66877863 | Msa0783140:CDS | 50.0% | |
| CTGAGCGTTAGGCTCTGTTT+GGG | + | chr5_2:66878806-66878825 | None:intergenic | 50.0% | |
| TCTGAGCGTTAGGCTCTGTT+TGG | + | chr5_2:66878807-66878826 | None:intergenic | 50.0% | |
| TTTCCGGCAGGCGATACAAA+AGG | - | chr5_2:66878950-66878969 | Msa0783140:intron | 50.0% | |
| ! | CAACCTTTTGTATCGCCTGC+CGG | + | chr5_2:66878956-66878975 | None:intergenic | 50.0% |
| ! | TGAAGCACTAACACGGACAC+CGG | + | chr5_2:66879275-66879294 | None:intergenic | 50.0% |
| CCGGCAGGAATACAATTCAG+AGG | - | chr5_2:66879793-66879812 | Msa0783140:intron | 50.0% | |
| TAGAGCAAGCCTTGCGATGT+GGG | - | chr5_2:66880003-66880022 | Msa0783140:intron | 50.0% | |
| GAGAAAAAAGGCAGGACAGG+AGG | + | chr5_2:66880415-66880434 | None:intergenic | 50.0% | |
| GTCGAGAAAAAAGGCAGGAC+AGG | + | chr5_2:66880418-66880437 | None:intergenic | 50.0% | |
| AGTCGGTCGAGAAAAAAGGC+AGG | + | chr5_2:66880423-66880442 | None:intergenic | 50.0% | |
| !!! | TGCCTTTTTTCTCGACCGAC+TGG | - | chr5_2:66880422-66880441 | Msa0783140:intron | 50.0% |
| AGCCAGTCGGTCGAGAAAAA+AGG | + | chr5_2:66880427-66880446 | None:intergenic | 50.0% | |
| GTGTTCTCCTGAATTGCGAG+TGG | - | chr5_2:66880713-66880732 | Msa0783140:intron | 50.0% | |
| GAACTCACCACTCGCAATTC+AGG | + | chr5_2:66880723-66880742 | None:intergenic | 50.0% | |
| GGGTTATTGGAGTAGAGTCG+TGG | - | chr5_2:66880776-66880795 | Msa0783140:intron | 50.0% | |
| CAGAATGGTGAGTCTTGCAC+TGG | + | chr5_2:66880868-66880887 | None:intergenic | 50.0% | |
| TTTCCGCTGTCTGTATGAGG+TGG | - | chr5_2:66881673-66881692 | Msa0783140:intron | 50.0% | |
| AGACCACCTCATACAGACAG+CGG | + | chr5_2:66881679-66881698 | None:intergenic | 50.0% | |
| GGCCGTGGAGAAACATAGAA+TGG | - | chr5_2:66881809-66881828 | Msa0783140:intron | 50.0% | |
| ! | CGGATGCTTGATGATTCTGG+TGG | - | chr5_2:66881870-66881889 | Msa0783140:CDS | 50.0% |
| ATTCGAGGAGGGTTGTCTTC+AGG | - | chr5_2:66881957-66881976 | Msa0783140:CDS | 50.0% | |
| TTCGAGGAGGGTTGTCTTCA+GGG | - | chr5_2:66881958-66881977 | Msa0783140:CDS | 50.0% | |
| CACTGATGGGATCTCTTCTC+TGG | + | chr5_2:66882040-66882059 | None:intergenic | 50.0% | |
| CAGAGAAGAGATCCCATCAG+TGG | - | chr5_2:66882038-66882057 | Msa0783140:CDS | 50.0% | |
| ! | GAAGAGAGGCGGGTTTAGAG+TGG | + | chr5_2:66877589-66877608 | None:intergenic | 55.0% |
| ! | TCCGACGGAGTGTTCTTCCA+TGG | + | chr5_2:66877665-66877684 | None:intergenic | 55.0% |
| ! | GGATGGTTCGGGTTTGACGA+CGG | + | chr5_2:66877701-66877720 | None:intergenic | 55.0% |
| GATCGGGAAATTGTCACCGC+CGG | + | chr5_2:66877764-66877783 | None:intergenic | 55.0% | |
| CGGCAGGCGATACAAAAGGT+TGG | - | chr5_2:66878954-66878973 | Msa0783140:intron | 55.0% | |
| CTAGAGCAAGCCTTGCGATG+TGG | - | chr5_2:66880002-66880021 | Msa0783140:intron | 55.0% | |
| TCGCTGAAACCCACATCGCA+AGG | + | chr5_2:66880015-66880034 | None:intergenic | 55.0% | |
| TGCGAGTGGTGAGTTCTTGG+TGG | - | chr5_2:66880727-66880746 | Msa0783140:intron | 55.0% | |
| GGGGAATGGGCAATAGCCAT+TGG | + | chr5_2:66880931-66880950 | None:intergenic | 55.0% | |
| ! | ATGAGTTGAAGGAGGTGCGC+TGG | - | chr5_2:66881407-66881426 | Msa0783140:intron | 55.0% |
| ! | TGGTTCGGGTTTGACGACGG+CGG | + | chr5_2:66877698-66877717 | None:intergenic | 60.0% |
| ! | GTCTCCGGTGACGGTTACAG+TGG | + | chr5_2:66877737-66877756 | None:intergenic | 60.0% |
| GAAATGCTCCACGGGGGAAG+CGG | + | chr5_2:66878934-66878953 | None:intergenic | 60.0% | |
| ! | CTTCCCCCGTGGAGCATTTC+CGG | - | chr5_2:66878934-66878953 | Msa0783140:intron | 60.0% |
| AAAGGAGGACATTGGGGCCG+TGG | - | chr5_2:66881794-66881813 | Msa0783140:intron | 60.0% | |
| TTGACGACGGCGGGAACGAG+TGG | + | chr5_2:66877688-66877707 | None:intergenic | 65.0% | |
| ! | GGTTCGGGTTTGACGACGGC+GGG | + | chr5_2:66877697-66877716 | None:intergenic | 65.0% |
| ACCGTCACCGGAGACATCGC+CGG | - | chr5_2:66877742-66877761 | Msa0783140:CDS | 65.0% | |
| ATCGAAGACCGCTTCCCCCG+TGG | - | chr5_2:66878923-66878942 | Msa0783140:intron | 65.0% | |
| CTGCCGGAAATGCTCCACGG+GGG | + | chr5_2:66878940-66878959 | None:intergenic | 65.0% | |
| CCTGCCGGAAATGCTCCACG+GGG | + | chr5_2:66878941-66878960 | None:intergenic | 65.0% | |
| GCCTGCCGGAAATGCTCCAC+GGG | + | chr5_2:66878942-66878961 | None:intergenic | 65.0% | |
| CGCCTGCCGGAAATGCTCCA+CGG | + | chr5_2:66878943-66878962 | None:intergenic | 65.0% | |
| GGCGGGAACGAGTGGTCCGA+CGG | + | chr5_2:66877680-66877699 | None:intergenic | 70.0% | |
| GCCGGCGATGTCTCCGGTGA+CGG | + | chr5_2:66877746-66877765 | None:intergenic | 70.0% | |
| GTCACCGGAGACATCGCCGG+CGG | - | chr5_2:66877745-66877764 | Msa0783140:CDS | 70.0% | |
| GTCACCGCCGGCGATGTCTC+CGG | + | chr5_2:66877752-66877771 | None:intergenic | 70.0% | |
| ! | CCCCGTGGAGCATTTCCGGC+AGG | - | chr5_2:66878938-66878957 | Msa0783140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66877563 | 66882254 | 66877563 | ID=Msa0783140;Name=Msa0783140 |
| chr5_2 | mRNA | 66877563 | 66882254 | 66877563 | ID=Msa0783140-mRNA-1;Parent=Msa0783140;Name=Msa0783140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|0.75|0.6|0.8|1|1|5|0|318 |
| chr5_2 | exon | 66877563 | 66877610 | 66877563 | ID=Msa0783140-mRNA-1:exon:20082;Parent=Msa0783140-mRNA-1 |
| chr5_2 | exon | 66877690 | 66878046 | 66877690 | ID=Msa0783140-mRNA-1:exon:20081;Parent=Msa0783140-mRNA-1 |
| chr5_2 | exon | 66878397 | 66878552 | 66878397 | ID=Msa0783140-mRNA-1:exon:20080;Parent=Msa0783140-mRNA-1 |
| chr5_2 | exon | 66880846 | 66880923 | 66880846 | ID=Msa0783140-mRNA-1:exon:20079;Parent=Msa0783140-mRNA-1 |
| chr5_2 | exon | 66881836 | 66882254 | 66881836 | ID=Msa0783140-mRNA-1:exon:20078;Parent=Msa0783140-mRNA-1 |
| chr5_2 | five_prime_UTR | 66882154 | 66882254 | 66882154 | ID=Msa0783140-mRNA-1:five_prime_utr;Parent=Msa0783140-mRNA-1 |
| chr5_2 | CDS | 66881836 | 66882153 | 66881836 | ID=Msa0783140-mRNA-1:cds;Parent=Msa0783140-mRNA-1 |
| chr5_2 | CDS | 66880846 | 66880923 | 66880846 | ID=Msa0783140-mRNA-1:cds;Parent=Msa0783140-mRNA-1 |
| chr5_2 | CDS | 66878397 | 66878552 | 66878397 | ID=Msa0783140-mRNA-1:cds;Parent=Msa0783140-mRNA-1 |
| chr5_2 | CDS | 66877690 | 66878046 | 66877690 | ID=Msa0783140-mRNA-1:cds;Parent=Msa0783140-mRNA-1 |
| chr5_2 | CDS | 66877563 | 66877610 | 66877563 | ID=Msa0783140-mRNA-1:cds;Parent=Msa0783140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
