Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789400 | sp|P35055|HEM6_SOYBN | 96.682 | 211 | 7 | 0 | 1 | 211 | 175 | 385 | 9.34e-156 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789400 | G7KFC7 | 100.000 | 211 | 0 | 0 | 1 | 211 | 189 | 399 | 1.45e-157 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0789400 | Msa0826800 | 0.820820 | 5.604719e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789400 | MtrunA17_Chr5g0448441 | 100.000 | 211 | 0 | 0 | 1 | 211 | 189 | 399 | 2.80e-161 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789400 | AT1G03475.1 | 92.891 | 211 | 15 | 0 | 1 | 211 | 176 | 386 | 5.83e-152 | 427 |
| Msa0789400 | AT4G03205.2 | 93.333 | 60 | 4 | 0 | 1 | 60 | 176 | 235 | 1.16e-35 | 126 |
| Msa0789400 | AT4G03205.1 | 94.828 | 58 | 3 | 0 | 1 | 58 | 176 | 233 | 1.91e-35 | 125 |
Find 68 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATATGTTGAATTTAATT+TGG | 0.210051 | 5_2:-77561084 | Msa0789400:intron |
| CATTCTTCACTTCCTACTTC+TGG | 0.241155 | 5_2:+77560755 | None:intergenic |
| TATCAGTTGACCACCCAATT+TGG | 0.330643 | 5_2:-77560687 | Msa0789400:three_prime_UTR |
| AAATGCAAGGTTGGGGCAAA+TGG | 0.346094 | 5_2:+77563737 | None:intergenic |
| AACTGTCTTAGCTTCCTATT+AGG | 0.353906 | 5_2:-77560590 | Msa0789400:three_prime_UTR |
| TTTGGCTACAGGTATATGAT+AGG | 0.355305 | 5_2:-77560975 | Msa0789400:intron |
| ATCACACCATTTCTTGAATC+GGG | 0.366775 | 5_2:+77562144 | None:intergenic |
| TGATTTACAATCCACCTAAT+AGG | 0.370631 | 5_2:+77560576 | None:intergenic |
| ATAAATTAGAGCCATTCCTT+TGG | 0.373068 | 5_2:+77560707 | None:intergenic |
| CATCACACCATTTCTTGAAT+CGG | 0.396583 | 5_2:+77562143 | None:intergenic |
| TATGATAGGGGTACAACATT+TGG | 0.397928 | 5_2:-77560961 | Msa0789400:CDS |
| CGAGATGAAAGGAGAGGGCT+TGG | 0.400399 | 5_2:-77561371 | Msa0789400:CDS |
| TAAATTAGAGCCATTCCTTT+GGG | 0.416224 | 5_2:+77560708 | None:intergenic |
| GATAATTGAAATGCAAGGTT+GGG | 0.419160 | 5_2:+77563729 | None:intergenic |
| ATGCTTCTTTCCTTCGCTAC+TGG | 0.430078 | 5_2:-77561308 | Msa0789400:intron |
| TTGGCTACAGGTATATGATA+GGG | 0.459971 | 5_2:-77560974 | Msa0789400:intron |
| TTTCTCTCCCACTGACTGCT+CGG | 0.469406 | 5_2:-77560903 | Msa0789400:CDS |
| CGATAATTGAAATGCAAGGT+TGG | 0.487126 | 5_2:+77563728 | None:intergenic |
| CTAGACAATGGTGGTTCGGT+GGG | 0.497187 | 5_2:-77562857 | Msa0789400:CDS |
| ATAGGTTCTTGAGGAACAAT+GGG | 0.497212 | 5_2:+77560466 | None:intergenic |
| TGATCTAAATGACTATGATC+AGG | 0.502813 | 5_2:-77561333 | Msa0789400:CDS |
| GATGAAAGGAGAGGGCTTGG+AGG | 0.508237 | 5_2:-77561368 | Msa0789400:CDS |
| CACCATTGTCTAGGTGCTCC+AGG | 0.508528 | 5_2:+77562867 | None:intergenic |
| TCTCCCACTGACTGCTCGGT+GGG | 0.508835 | 5_2:-77560899 | Msa0789400:CDS |
| CAGAAGTAGGAAGTGAAGAA+TGG | 0.508880 | 5_2:-77560754 | Msa0789400:CDS |
| GCACCTAGACAATGGTGGTT+CGG | 0.513604 | 5_2:-77562861 | Msa0789400:CDS |
| TGTCTTAGCTTCCTATTAGG+TGG | 0.515464 | 5_2:-77560587 | Msa0789400:three_prime_UTR |
| CCTAGACAATGGTGGTTCGG+TGG | 0.527031 | 5_2:-77562858 | Msa0789400:CDS |
| CAAGCCCTCTCCTTTCATCT+CGG | 0.528044 | 5_2:+77561372 | None:intergenic |
| CCACCGAACCACCATTGTCT+AGG | 0.530916 | 5_2:+77562858 | None:intergenic |
| TGCTTTCTGATGATCTGTGA+AGG | 0.536139 | 5_2:+77561127 | None:intergenic |
| ATATACCTATCATAGAGAAA+AGG | 0.538904 | 5_2:-77561160 | Msa0789400:CDS |
| AATGCAAGGTTGGGGCAAAT+GGG | 0.541145 | 5_2:+77563738 | None:intergenic |
| GATAGGTTCTTGAGGAACAA+TGG | 0.544329 | 5_2:+77560465 | None:intergenic |
| ACACATACCTTTGGGAGCAT+CGG | 0.544900 | 5_2:+77563694 | None:intergenic |
| TGGCTACAGGTATATGATAG+GGG | 0.566817 | 5_2:-77560973 | Msa0789400:intron |
| AAATTCAGCACCGAGATGAA+AGG | 0.567112 | 5_2:-77561382 | Msa0789400:intron |
| CTCTCCCACTGACTGCTCGG+TGG | 0.567673 | 5_2:-77560900 | Msa0789400:CDS |
| AATGTAAGCAGGGGTTAAGT+CGG | 0.569045 | 5_2:+77562830 | None:intergenic |
| GCGAAATAGATAGGTTCTTG+AGG | 0.572408 | 5_2:+77560457 | None:intergenic |
| TGTGTGCAGAAACCAGAAGT+AGG | 0.576195 | 5_2:-77560767 | Msa0789400:intron |
| AAGCATGGCAACAATTGCGA+AGG | 0.577934 | 5_2:-77561109 | Msa0789400:CDS |
| AGACAATGGTGGTTCGGTGG+GGG | 0.578555 | 5_2:-77562855 | Msa0789400:CDS |
| CAAGCAATTACCAGTAGCGA+AGG | 0.581252 | 5_2:+77561298 | None:intergenic |
| TCACACCATTTCTTGAATCG+GGG | 0.588342 | 5_2:+77562145 | None:intergenic |
| TCACAGATCATCAGAAAGCA+TGG | 0.590156 | 5_2:-77561124 | Msa0789400:CDS |
| TATTCCCACCGAGCAGTCAG+TGG | 0.590842 | 5_2:+77560895 | None:intergenic |
| ATAATTGAAATGCAAGGTTG+GGG | 0.591405 | 5_2:+77563730 | None:intergenic |
| CTCTATGATAGGTATATAAG+CGG | 0.593614 | 5_2:+77561166 | None:intergenic |
| AGCATGGCAACAATTGCGAA+GGG | 0.599983 | 5_2:-77561108 | Msa0789400:CDS |
| CACACCATTTCTTGAATCGG+GGG | 0.601935 | 5_2:+77562146 | None:intergenic |
| TCTATGATAGGTATATAAGC+GGG | 0.613583 | 5_2:+77561167 | None:intergenic |
| AGCACCGAGATGAAAGGAGA+GGG | 0.615641 | 5_2:-77561376 | Msa0789400:CDS |
| GTTTAGACTGCGCTGTACTG+TGG | 0.616259 | 5_2:-77560504 | Msa0789400:three_prime_UTR |
| AGATGCATGCATTAACCCAA+AGG | 0.618643 | 5_2:-77560723 | Msa0789400:CDS |
| TTTGAAACCGATGCTCCCAA+AGG | 0.621458 | 5_2:-77563701 | Msa0789400:intron |
| ATTCCCACCGAGCAGTCAGT+GGG | 0.621466 | 5_2:+77560896 | None:intergenic |
| TAGACAATGGTGGTTCGGTG+GGG | 0.621581 | 5_2:-77562856 | Msa0789400:CDS |
| GCTTTCTGATGATCTGTGAA+GGG | 0.631666 | 5_2:+77561128 | None:intergenic |
| CATGCATTAACCCAAAGGAA+TGG | 0.631803 | 5_2:-77560718 | Msa0789400:CDS |
| ATAGCGATAATTGAAATGCA+AGG | 0.631845 | 5_2:+77563724 | None:intergenic |
| CTCCTGGAGCACCTAGACAA+TGG | 0.634463 | 5_2:-77562869 | Msa0789400:CDS |
| TACAAGTACATGATATACAC+CGG | 0.641806 | 5_2:+77560624 | None:intergenic |
| ACCTATCATAGAGAAAAGGA+AGG | 0.642984 | 5_2:-77561156 | Msa0789400:CDS |
| CTGGAGCACCTAGACAATGG+TGG | 0.660100 | 5_2:-77562866 | Msa0789400:CDS |
| ACAATGGGTAGTACAAAGAG+AGG | 0.661628 | 5_2:+77560481 | None:intergenic |
| CAGCACCGAGATGAAAGGAG+AGG | 0.663131 | 5_2:-77561377 | Msa0789400:CDS |
| GCATGGCAACAATTGCGAAG+GGG | 0.716040 | 5_2:-77561107 | Msa0789400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTGATTATAATGATTT+TGG | - | chr5_2:77560531-77560550 | Msa0789400:three_prime_UTR | 15.0% |
| !!! | TTTCTGATTATAATGATTTT+GGG | - | chr5_2:77560532-77560551 | Msa0789400:three_prime_UTR | 15.0% |
| !! | TTATATTTCTTTATTATTGC+TGG | - | chr5_2:77561729-77561748 | Msa0789400:intron | 15.0% |
| !!! | GTATATAATGCTTTTTTTTT+AGG | - | chr5_2:77561940-77561959 | Msa0789400:intron | 15.0% |
| !! | AAATTGAATAGATAAAGAGA+CGG | + | chr5_2:77560736-77560755 | None:intergenic | 20.0% |
| !!! | ATTTTGCAATCTTTTTCTTT+TGG | - | chr5_2:77560893-77560912 | Msa0789400:CDS | 20.0% |
| !!! | TTTTGCAATCTTTTTCTTTT+GGG | - | chr5_2:77560894-77560913 | Msa0789400:CDS | 20.0% |
| !!! | ATCCGATATTTTTTTGTTTA+AGG | - | chr5_2:77561890-77561909 | Msa0789400:intron | 20.0% |
| !!! | TCCGATATTTTTTTGTTTAA+GGG | - | chr5_2:77561891-77561910 | Msa0789400:intron | 20.0% |
| !!! | TTTTTTTTAGGTTCAAAAAC+AGG | - | chr5_2:77561952-77561971 | Msa0789400:intron | 20.0% |
| !!! | TGATGATTACTTTTATATCA+AGG | - | chr5_2:77562024-77562043 | Msa0789400:intron | 20.0% |
| !!! | AAAATTTACTCTTTTGTTGA+AGG | + | chr5_2:77562180-77562199 | None:intergenic | 20.0% |
| !! | ACGATATGTTGAATTTAATT+TGG | - | chr5_2:77563065-77563084 | Msa0789400:intron | 20.0% |
| !!! | TTTGCATAATTTTACAACAT+CGG | + | chr5_2:77563617-77563636 | None:intergenic | 20.0% |
| ! | TGCATAAAAGAAAGAAAAAG+CGG | + | chr5_2:77560482-77560501 | None:intergenic | 25.0% |
| ! | GAATAATGAGAATTCAATTC+AGG | + | chr5_2:77560567-77560586 | None:intergenic | 25.0% |
| ! | AATGCAAAACACATAGTATA+AGG | + | chr5_2:77560995-77561014 | None:intergenic | 25.0% |
| !!! | TATTGGTTTTTCAAATCTTG+TGG | - | chr5_2:77561386-77561405 | Msa0789400:intron | 25.0% |
| !!! | AAGGTGACATTTTAAAACAA+AGG | + | chr5_2:77561456-77561475 | None:intergenic | 25.0% |
| !!! | TTATGTGAGTAGTTTTAATC+TGG | - | chr5_2:77561487-77561506 | Msa0789400:intron | 25.0% |
| ! | TGAATTAAATATGTCTAGCT+TGG | - | chr5_2:77561535-77561554 | Msa0789400:intron | 25.0% |
| ! | GCCCTTAAACAAAAAAATAT+CGG | + | chr5_2:77561895-77561914 | None:intergenic | 25.0% |
| ! | AAATCTCGATAACATGAAAA+AGG | + | chr5_2:77562061-77562080 | None:intergenic | 25.0% |
| ! | AGGAACCTCATTTATAATAT+TGG | - | chr5_2:77562557-77562576 | Msa0789400:intron | 25.0% |
| ! | GGAACCTCATTTATAATATT+GGG | - | chr5_2:77562558-77562577 | Msa0789400:intron | 25.0% |
| ! | TAAGCCCAATATTATAAATG+AGG | + | chr5_2:77562565-77562584 | None:intergenic | 25.0% |
| ! | TTGTAATTAAATTGAGCATG+TGG | - | chr5_2:77562698-77562717 | Msa0789400:intron | 25.0% |
| !! | TGCTTGAATCTATAATTTGT+TGG | - | chr5_2:77562868-77562887 | Msa0789400:CDS | 25.0% |
| ! | ATATACCTATCATAGAGAAA+AGG | - | chr5_2:77562989-77563008 | Msa0789400:intron | 25.0% |
| !!! | ATGTTGCCACTTTTATTTTT+TGG | - | chr5_2:77563156-77563175 | Msa0789400:intron | 25.0% |
| !! | AATTTTATAACTGGAATACC+AGG | + | chr5_2:77563346-77563365 | None:intergenic | 25.0% |
| ! | TTATAAAATTGCTGCTGATA+TGG | - | chr5_2:77563356-77563375 | Msa0789400:intron | 25.0% |
| ! | ATTGAAAAAGCTACCAAATT+GGG | + | chr5_2:77563478-77563497 | None:intergenic | 25.0% |
| ! | TATTGAAAAAGCTACCAAAT+TGG | + | chr5_2:77563479-77563498 | None:intergenic | 25.0% |
| !!! | ATAGCTTGTATTCTTTTTTC+CGG | - | chr5_2:77563506-77563525 | Msa0789400:intron | 25.0% |
| !!! | TGTTTTTTTGCGAAATAGAT+AGG | + | chr5_2:77563704-77563723 | None:intergenic | 25.0% |
| ! | TCTATTTCGCAAAAAAACAA+AGG | - | chr5_2:77563705-77563724 | Msa0789400:CDS | 25.0% |
| ATAATTGAAATGCAAGGTTG+GGG | + | chr5_2:77560422-77560441 | None:intergenic | 30.0% | |
| GATAATTGAAATGCAAGGTT+GGG | + | chr5_2:77560423-77560442 | None:intergenic | 30.0% | |
| ATAGCGATAATTGAAATGCA+AGG | + | chr5_2:77560428-77560447 | None:intergenic | 30.0% | |
| !! | AAGTAGCTTTGAAATGAACA+CGG | + | chr5_2:77560513-77560532 | None:intergenic | 30.0% |
| AAAAACACATTGCTAAATCC+TGG | + | chr5_2:77560660-77560679 | None:intergenic | 30.0% | |
| ! | AGGATTTAGCAATGTGTTTT+TGG | - | chr5_2:77560659-77560678 | Msa0789400:three_prime_UTR | 30.0% |
| !!! | ATTTAGCAATGTGTTTTTGG+TGG | - | chr5_2:77560662-77560681 | Msa0789400:three_prime_UTR | 30.0% |
| TCTATTCAATTTCAGTCATG+TGG | - | chr5_2:77560744-77560763 | Msa0789400:CDS | 30.0% | |
| !!! | TTCTTTTGGGTTGGTTTTTT+TGG | - | chr5_2:77560907-77560926 | Msa0789400:CDS | 30.0% |
| ACATAGTATAAGGCATACTT+TGG | + | chr5_2:77560985-77561004 | None:intergenic | 30.0% | |
| GCAGTTAACAATGTAATTTC+TGG | + | chr5_2:77561090-77561109 | None:intergenic | 30.0% | |
| GCTGTACTTATGATAGTTAA+GGG | + | chr5_2:77561112-77561131 | None:intergenic | 30.0% | |
| AGCTGTACTTATGATAGTTA+AGG | + | chr5_2:77561113-77561132 | None:intergenic | 30.0% | |
| TCTAGTACGTATCATTATAC+TGG | - | chr5_2:77561164-77561183 | Msa0789400:CDS | 30.0% | |
| ! | TATTTTGTGCACTTACTGAA+TGG | + | chr5_2:77561368-77561387 | None:intergenic | 30.0% |
| TCAGTAAGTGCACAAAATAT+TGG | - | chr5_2:77561369-77561388 | Msa0789400:CDS | 30.0% | |
| TGGTTAAGAGTCAAATTCTT+TGG | - | chr5_2:77561406-77561425 | Msa0789400:intron | 30.0% | |
| TCACATAAGATGTCAAAGTA+AGG | + | chr5_2:77561475-77561494 | None:intergenic | 30.0% | |
| !! | AGCACTGAAATTTTAAGCAT+AGG | - | chr5_2:77561574-77561593 | Msa0789400:intron | 30.0% |
| ! | GCACTGAAATTTTAAGCATA+GGG | - | chr5_2:77561575-77561594 | Msa0789400:intron | 30.0% |
| ! | AAATTTTAAGCATAGGGATC+TGG | - | chr5_2:77561581-77561600 | Msa0789400:intron | 30.0% |
| !!! | TATGTTTTGTTTCCCTTTCA+GGG | + | chr5_2:77561693-77561712 | None:intergenic | 30.0% |
| !!! | ATATGTTTTGTTTCCCTTTC+AGG | + | chr5_2:77561694-77561713 | None:intergenic | 30.0% |
| !! | ATTCTATTCTTTTTGGGAAG+GGG | + | chr5_2:77561783-77561802 | None:intergenic | 30.0% |
| !! | GATTCTATTCTTTTTGGGAA+GGG | + | chr5_2:77561784-77561803 | None:intergenic | 30.0% |
| ! | TTGGGGATTCTATTCTTTTT+GGG | + | chr5_2:77561789-77561808 | None:intergenic | 30.0% |
| ! | TTTGGGGATTCTATTCTTTT+TGG | + | chr5_2:77561790-77561809 | None:intergenic | 30.0% |
| AAAGAATAGAATCCCCAAAT+TGG | - | chr5_2:77561791-77561810 | Msa0789400:intron | 30.0% | |
| TGTATGTTAGGATGATTGAT+AGG | - | chr5_2:77562289-77562308 | Msa0789400:intron | 30.0% | |
| TTAGGATGATTGATAGGATA+GGG | - | chr5_2:77562295-77562314 | Msa0789400:intron | 30.0% | |
| GAATAACACCTATGATGATT+TGG | - | chr5_2:77562317-77562336 | Msa0789400:intron | 30.0% | |
| GCTGATAATATGATTCATTC+AGG | - | chr5_2:77562379-77562398 | Msa0789400:intron | 30.0% | |
| TTTGTATGCATTTAACTGCA+AGG | - | chr5_2:77562486-77562505 | Msa0789400:intron | 30.0% | |
| TTAAAACGAAAAGGAAAACC+AGG | + | chr5_2:77562749-77562768 | None:intergenic | 30.0% | |
| ! | GTGCTGAATTTAAAACGAAA+AGG | + | chr5_2:77562758-77562777 | None:intergenic | 30.0% |
| TGATCTAAATGACTATGATC+AGG | - | chr5_2:77562816-77562835 | Msa0789400:CDS | 30.0% | |
| TCTATGATAGGTATATAAGC+GGG | + | chr5_2:77562985-77563004 | None:intergenic | 30.0% | |
| CTCTATGATAGGTATATAAG+CGG | + | chr5_2:77562986-77563005 | None:intergenic | 30.0% | |
| AAGGAATAGAGCACAAAATT+TGG | + | chr5_2:77563116-77563135 | None:intergenic | 30.0% | |
| AGTTTAAACCTGATCTGAAA+AGG | + | chr5_2:77563135-77563154 | None:intergenic | 30.0% | |
| CTGTAGCCAAAAAATAAAAG+TGG | + | chr5_2:77563165-77563184 | None:intergenic | 30.0% | |
| !!! | CACTTTTATTTTTTGGCTAC+AGG | - | chr5_2:77563163-77563182 | Msa0789400:intron | 30.0% |
| ACAACATTTGGACTAAAAAC+TGG | - | chr5_2:77563200-77563219 | Msa0789400:intron | 30.0% | |
| AGTTGAATATTAGATGAACC+TGG | - | chr5_2:77563325-77563344 | Msa0789400:intron | 30.0% | |
| ! | ATCAGCAGCAATTTTATAAC+TGG | + | chr5_2:77563355-77563374 | None:intergenic | 30.0% |
| TAAATTAGAGCCATTCCTTT+GGG | + | chr5_2:77563444-77563463 | None:intergenic | 30.0% | |
| ATAAATTAGAGCCATTCCTT+TGG | + | chr5_2:77563445-77563464 | None:intergenic | 30.0% | |
| TACAAGTACATGATATACAC+CGG | + | chr5_2:77563528-77563547 | None:intergenic | 30.0% | |
| TGATTTACAATCCACCTAAT+AGG | + | chr5_2:77563576-77563595 | None:intergenic | 30.0% | |
| CGATAATTGAAATGCAAGGT+TGG | + | chr5_2:77560424-77560443 | None:intergenic | 35.0% | |
| TCTATTATTGATGCTCTTCC+AGG | - | chr5_2:77560639-77560658 | Msa0789400:three_prime_UTR | 35.0% | |
| TTTGCCTTTGTCAACATTAG+TGG | - | chr5_2:77560688-77560707 | Msa0789400:three_prime_UTR | 35.0% | |
| TGAATAGATAAAGAGACGGA+GGG | + | chr5_2:77560732-77560751 | None:intergenic | 35.0% | |
| TTGAATAGATAAAGAGACGG+AGG | + | chr5_2:77560733-77560752 | None:intergenic | 35.0% | |
| !! | GTTTGTTTTTCAGCCTGTTT+TGG | - | chr5_2:77560779-77560798 | Msa0789400:intron | 35.0% |
| ATGACAGACAAATCCAAAAC+AGG | + | chr5_2:77560795-77560814 | None:intergenic | 35.0% | |
| TTTGGATTTGTCTGTCATTG+TGG | - | chr5_2:77560797-77560816 | Msa0789400:intron | 35.0% | |
| ! | CTTCATCTTTTAGACGTGTT+TGG | - | chr5_2:77560848-77560867 | Msa0789400:intron | 35.0% |
| !! | GCAATCTTTTTCTTTTGGGT+TGG | - | chr5_2:77560898-77560917 | Msa0789400:CDS | 35.0% |
| !!! | TTTTGGGTTGGTTTTTTTGG+TGG | - | chr5_2:77560910-77560929 | Msa0789400:CDS | 35.0% |
| !!! | TTTGGGTTGGTTTTTTTGGT+GGG | - | chr5_2:77560911-77560930 | Msa0789400:CDS | 35.0% |
| AAACTTGTAGTGACTGACAT+TGG | - | chr5_2:77561199-77561218 | Msa0789400:intron | 35.0% | |
| !!! | TCTGGTTTTGCAATTTCAGA+TGG | - | chr5_2:77561505-77561524 | Msa0789400:intron | 35.0% |
| TTCAGTGCTACACATATCAA+AGG | + | chr5_2:77561563-77561582 | None:intergenic | 35.0% | |
| ! | TTGTTTCTCTCTATGCTATC+TGG | - | chr5_2:77561661-77561680 | Msa0789400:intron | 35.0% |
| !! | GGATTCTATTCTTTTTGGGA+AGG | + | chr5_2:77561785-77561804 | None:intergenic | 35.0% |
| ATCACACCATTTCTTGAATC+GGG | + | chr5_2:77562008-77562027 | None:intergenic | 35.0% | |
| CATCACACCATTTCTTGAAT+CGG | + | chr5_2:77562009-77562028 | None:intergenic | 35.0% | |
| TGTTTGATAAAGCTGAAGCT+AGG | - | chr5_2:77562111-77562130 | Msa0789400:intron | 35.0% | |
| AAAGCAATGAATGAGCATTC+AGG | - | chr5_2:77562140-77562159 | Msa0789400:CDS | 35.0% | |
| AAGCAATGAATGAGCATTCA+GGG | - | chr5_2:77562141-77562160 | Msa0789400:CDS | 35.0% | |
| ! | ATGAAACCAGTGTTTGTTGA+TGG | - | chr5_2:77562252-77562271 | Msa0789400:intron | 35.0% |
| ! | TGAAACCAGTGTTTGTTGAT+GGG | - | chr5_2:77562253-77562272 | Msa0789400:intron | 35.0% |
| AGCAAGGATGTTTGTATGTT+AGG | - | chr5_2:77562277-77562296 | Msa0789400:intron | 35.0% | |
| GTTAGGATGATTGATAGGAT+AGG | - | chr5_2:77562294-77562313 | Msa0789400:intron | 35.0% | |
| CACTATTGCCAAATCATCAT+AGG | + | chr5_2:77562328-77562347 | None:intergenic | 35.0% | |
| ATGATTCATTCAGGAGACTT+AGG | - | chr5_2:77562388-77562407 | Msa0789400:intron | 35.0% | |
| ACCCATAAATCCTGAAATGA+AGG | - | chr5_2:77562525-77562544 | Msa0789400:intron | 35.0% | |
| GCCTTCATTTCAGGATTTAT+GGG | + | chr5_2:77562529-77562548 | None:intergenic | 35.0% | |
| TGCCTTCATTTCAGGATTTA+TGG | + | chr5_2:77562530-77562549 | None:intergenic | 35.0% | |
| TATATCTGTGTCTCCTTAGT+TGG | - | chr5_2:77562607-77562626 | Msa0789400:intron | 35.0% | |
| ACATGTTTGAGGGATTAAAG+TGG | - | chr5_2:77562647-77562666 | Msa0789400:intron | 35.0% | |
| ! | TTGTTGCTGATTGTATTTCC+TGG | - | chr5_2:77562728-77562747 | Msa0789400:intron | 35.0% |
| TCTGCAAGCAATCATAGTTT+AGG | + | chr5_2:77562943-77562962 | None:intergenic | 35.0% | |
| ACCTATCATAGAGAAAAGGA+AGG | - | chr5_2:77562993-77563012 | Msa0789400:intron | 35.0% | |
| ! | TCCTTCCTTTTCTCTATGAT+AGG | + | chr5_2:77562997-77563016 | None:intergenic | 35.0% |
| TTTGGCTACAGGTATATGAT+AGG | - | chr5_2:77563174-77563193 | Msa0789400:intron | 35.0% | |
| TTGGCTACAGGTATATGATA+GGG | - | chr5_2:77563175-77563194 | Msa0789400:intron | 35.0% | |
| ! | TATGATAGGGGTACAACATT+TGG | - | chr5_2:77563188-77563207 | Msa0789400:intron | 35.0% |
| ACATTTGGACTAAAAACTGG+AGG | - | chr5_2:77563203-77563222 | Msa0789400:intron | 35.0% | |
| AACTGTCTTAGCTTCCTATT+AGG | - | chr5_2:77563559-77563578 | Msa0789400:intron | 35.0% | |
| ATAGGTTCTTGAGGAACAAT+GGG | + | chr5_2:77563686-77563705 | None:intergenic | 35.0% | |
| AAAGCGGAACACATACCTTT+GGG | + | chr5_2:77560466-77560485 | None:intergenic | 40.0% | |
| AAAAGCGGAACACATACCTT+TGG | + | chr5_2:77560467-77560486 | None:intergenic | 40.0% | |
| GGATCCACTAATGTTGACAA+AGG | + | chr5_2:77560695-77560714 | None:intergenic | 40.0% | |
| GAATAGATAAAGAGACGGAG+GGG | + | chr5_2:77560731-77560750 | None:intergenic | 40.0% | |
| GAAAAACAAACAGTCGCATC+AGG | + | chr5_2:77560770-77560789 | None:intergenic | 40.0% | |
| TTTGTCTGTCATTGTGGTTC+TGG | - | chr5_2:77560803-77560822 | Msa0789400:intron | 40.0% | |
| !! | GTCATTGTGGTTCTGGTATT+TGG | - | chr5_2:77560810-77560829 | Msa0789400:intron | 40.0% |
| ! | CTTTTAGACGTGTTTGGCAT+AGG | - | chr5_2:77560854-77560873 | Msa0789400:intron | 40.0% |
| !!! | TTGGGTTGGTTTTTTTGGTG+GGG | - | chr5_2:77560912-77560931 | Msa0789400:CDS | 40.0% |
| AGTGACTGACATTGGATAAC+AGG | - | chr5_2:77561207-77561226 | Msa0789400:intron | 40.0% | |
| TCAATAGAAGCAAACCCAAG+AGG | + | chr5_2:77561233-77561252 | None:intergenic | 40.0% | |
| ! | TTTCATTTTGCAGATGCTCC+TGG | - | chr5_2:77561264-77561283 | Msa0789400:intron | 40.0% |
| AATGTAAGCAGGGGTTAAGT+CGG | + | chr5_2:77561322-77561341 | None:intergenic | 40.0% | |
| ! | AACCCCTGCTTACATTTTTG+AGG | - | chr5_2:77561326-77561345 | Msa0789400:CDS | 40.0% |
| CTCCTCAAAAATGTAAGCAG+GGG | + | chr5_2:77561331-77561350 | None:intergenic | 40.0% | |
| CCTCCTCAAAAATGTAAGCA+GGG | + | chr5_2:77561332-77561351 | None:intergenic | 40.0% | |
| TCCTCCTCAAAAATGTAAGC+AGG | + | chr5_2:77561333-77561352 | None:intergenic | 40.0% | |
| TATCTGGACTAAACCCTGAA+AGG | - | chr5_2:77561677-77561696 | Msa0789400:intron | 40.0% | |
| ATCTGGACTAAACCCTGAAA+GGG | - | chr5_2:77561678-77561697 | Msa0789400:intron | 40.0% | |
| !! | TATTCTTTTTGGGAAGGGGT+GGG | + | chr5_2:77561779-77561798 | None:intergenic | 40.0% |
| AATCCCCAAATTGGCAATGT+TGG | - | chr5_2:77561800-77561819 | Msa0789400:intron | 40.0% | |
| TGTCCAACATTGCCAATTTG+GGG | + | chr5_2:77561806-77561825 | None:intergenic | 40.0% | |
| GTGTCCAACATTGCCAATTT+GGG | + | chr5_2:77561807-77561826 | None:intergenic | 40.0% | |
| AGTGTCCAACATTGCCAATT+TGG | + | chr5_2:77561808-77561827 | None:intergenic | 40.0% | |
| GTTGGACACTTGAGAAATTC+TGG | - | chr5_2:77561818-77561837 | Msa0789400:intron | 40.0% | |
| TTTCTTGAATCGGGGGTAAA+AGG | + | chr5_2:77561999-77562018 | None:intergenic | 40.0% | |
| TTTACCCCCGATTCAAGAAA+TGG | - | chr5_2:77561999-77562018 | Msa0789400:intron | 40.0% | |
| TCACACCATTTCTTGAATCG+GGG | + | chr5_2:77562007-77562026 | None:intergenic | 40.0% | |
| ! | AAATTCAGCACCGAGATGAA+AGG | - | chr5_2:77562767-77562786 | Msa0789400:intron | 40.0% |
| GCTTTCTGATGATCTGTGAA+GGG | + | chr5_2:77563024-77563043 | None:intergenic | 40.0% | |
| TGCTTTCTGATGATCTGTGA+AGG | + | chr5_2:77563025-77563044 | None:intergenic | 40.0% | |
| TCACAGATCATCAGAAAGCA+TGG | - | chr5_2:77563025-77563044 | Msa0789400:intron | 40.0% | |
| ! | GCTCTATTCCTTTTCAGATC+AGG | - | chr5_2:77563124-77563143 | Msa0789400:intron | 40.0% |
| TGGCTACAGGTATATGATAG+GGG | - | chr5_2:77563176-77563195 | Msa0789400:intron | 40.0% | |
| CATTCTTCACTTCCTACTTC+TGG | + | chr5_2:77563397-77563416 | None:intergenic | 40.0% | |
| CAGAAGTAGGAAGTGAAGAA+TGG | - | chr5_2:77563395-77563414 | Msa0789400:intron | 40.0% | |
| AGATGCATGCATTAACCCAA+AGG | - | chr5_2:77563426-77563445 | Msa0789400:intron | 40.0% | |
| CATGCATTAACCCAAAGGAA+TGG | - | chr5_2:77563431-77563450 | Msa0789400:intron | 40.0% | |
| TATCAGTTGACCACCCAATT+TGG | - | chr5_2:77563462-77563481 | Msa0789400:intron | 40.0% | |
| GAAAAAGCTACCAAATTGGG+TGG | + | chr5_2:77563475-77563494 | None:intergenic | 40.0% | |
| TGTCTTAGCTTCCTATTAGG+TGG | - | chr5_2:77563562-77563581 | Msa0789400:intron | 40.0% | |
| ACAATGGGTAGTACAAAGAG+AGG | + | chr5_2:77563671-77563690 | None:intergenic | 40.0% | |
| GATAGGTTCTTGAGGAACAA+TGG | + | chr5_2:77563687-77563706 | None:intergenic | 40.0% | |
| GCGAAATAGATAGGTTCTTG+AGG | + | chr5_2:77563695-77563714 | None:intergenic | 40.0% | |
| !! | GTTGGGGCAAATGGGTTTTT+GGG | + | chr5_2:77560406-77560425 | None:intergenic | 45.0% |
| AATGCAAGGTTGGGGCAAAT+GGG | + | chr5_2:77560414-77560433 | None:intergenic | 45.0% | |
| AAATGCAAGGTTGGGGCAAA+TGG | + | chr5_2:77560415-77560434 | None:intergenic | 45.0% | |
| ! | TTTGAAACCGATGCTCCCAA+AGG | - | chr5_2:77560448-77560467 | Msa0789400:three_prime_UTR | 45.0% |
| ! | ACACATACCTTTGGGAGCAT+CGG | + | chr5_2:77560458-77560477 | None:intergenic | 45.0% |
| !!! | TGGGTTGGTTTTTTTGGTGG+GGG | - | chr5_2:77560913-77560932 | Msa0789400:CDS | 45.0% |
| ACATTGGATAACAGGCCTCT+TGG | - | chr5_2:77561215-77561234 | Msa0789400:intron | 45.0% | |
| CATTGGATAACAGGCCTCTT+GGG | - | chr5_2:77561216-77561235 | Msa0789400:intron | 45.0% | |
| !! | CCCTGCTTACATTTTTGAGG+AGG | - | chr5_2:77561329-77561348 | Msa0789400:CDS | 45.0% |
| !! | ATTCTTTTTGGGAAGGGGTG+GGG | + | chr5_2:77561778-77561797 | None:intergenic | 45.0% |
| !! | CTATTCTTTTTGGGAAGGGG+TGG | + | chr5_2:77561780-77561799 | None:intergenic | 45.0% |
| TTGAATCGGGGGTAAAAGGT+AGG | + | chr5_2:77561995-77562014 | None:intergenic | 45.0% | |
| CACACCATTTCTTGAATCGG+GGG | + | chr5_2:77562006-77562025 | None:intergenic | 45.0% | |
| TGCTACCCATCAACAAACAC+TGG | + | chr5_2:77562261-77562280 | None:intergenic | 45.0% | |
| ! | GTGTTTGTTGATGGGTAGCA+AGG | - | chr5_2:77562261-77562280 | Msa0789400:intron | 45.0% |
| ! | TCCTGAAATGAAGGCACATG+AGG | - | chr5_2:77562534-77562553 | Msa0789400:intron | 45.0% |
| TCCTCATGTGCCTTCATTTC+AGG | + | chr5_2:77562538-77562557 | None:intergenic | 45.0% | |
| ! | TGAAATGAAGGCACATGAGG+AGG | - | chr5_2:77562537-77562556 | Msa0789400:intron | 45.0% |
| GTGTCTCCTTAGTTGGATCA+TGG | - | chr5_2:77562614-77562633 | Msa0789400:intron | 45.0% | |
| CAGCAACCATGATCCAACTA+AGG | + | chr5_2:77562623-77562642 | None:intergenic | 45.0% | |
| TAGTTGGATCATGGTTGCTG+CGG | - | chr5_2:77562623-77562642 | Msa0789400:intron | 45.0% | |
| ATGCTTCTTTCCTTCGCTAC+TGG | - | chr5_2:77562841-77562860 | Msa0789400:CDS | 45.0% | |
| CAAGCAATTACCAGTAGCGA+AGG | + | chr5_2:77562854-77562873 | None:intergenic | 45.0% | |
| AAGCATGGCAACAATTGCGA+AGG | - | chr5_2:77563040-77563059 | Msa0789400:intron | 45.0% | |
| AGCATGGCAACAATTGCGAA+GGG | - | chr5_2:77563041-77563060 | Msa0789400:intron | 45.0% | |
| TGTGTGCAGAAACCAGAAGT+AGG | - | chr5_2:77563382-77563401 | Msa0789400:intron | 45.0% | |
| !! | GGTTGGGGCAAATGGGTTTT+TGG | + | chr5_2:77560407-77560426 | None:intergenic | 50.0% |
| ! | CGGAGGGGCATATATACTAC+AGG | + | chr5_2:77560716-77560735 | None:intergenic | 50.0% |
| GCACCTAGACAATGGTGGTT+CGG | - | chr5_2:77561288-77561307 | Msa0789400:intron | 50.0% | |
| !! | CTAGACAATGGTGGTTCGGT+GGG | - | chr5_2:77561292-77561311 | Msa0789400:intron | 50.0% |
| !! | TAGACAATGGTGGTTCGGTG+GGG | - | chr5_2:77561293-77561312 | Msa0789400:intron | 50.0% |
| AGTTGGATCATGGTTGCTGC+GGG | - | chr5_2:77562624-77562643 | Msa0789400:intron | 50.0% | |
| TTGCTGCGGGACATGTTTGA+GGG | - | chr5_2:77562637-77562656 | Msa0789400:intron | 50.0% | |
| ! | AGCACCGAGATGAAAGGAGA+GGG | - | chr5_2:77562773-77562792 | Msa0789400:intron | 50.0% |
| CAAGCCCTCTCCTTTCATCT+CGG | + | chr5_2:77562780-77562799 | None:intergenic | 50.0% | |
| GCATGGCAACAATTGCGAAG+GGG | - | chr5_2:77563042-77563061 | Msa0789400:intron | 50.0% | |
| ! | TTTCTCTCCCACTGACTGCT+CGG | - | chr5_2:77563246-77563265 | Msa0789400:intron | 50.0% |
| GTTTAGACTGCGCTGTACTG+TGG | - | chr5_2:77563645-77563664 | Msa0789400:intron | 50.0% | |
| ! | CTCCTGGAGCACCTAGACAA+TGG | - | chr5_2:77561280-77561299 | Msa0789400:intron | 55.0% |
| CACCATTGTCTAGGTGCTCC+AGG | + | chr5_2:77561285-77561304 | None:intergenic | 55.0% | |
| ! | CTGGAGCACCTAGACAATGG+TGG | - | chr5_2:77561283-77561302 | Msa0789400:intron | 55.0% |
| CCACCGAACCACCATTGTCT+AGG | + | chr5_2:77561294-77561313 | None:intergenic | 55.0% | |
| ! | CCTAGACAATGGTGGTTCGG+TGG | - | chr5_2:77561291-77561310 | Msa0789400:intron | 55.0% |
| !! | AGACAATGGTGGTTCGGTGG+GGG | - | chr5_2:77561294-77561313 | Msa0789400:intron | 55.0% |
| GGAAGGGGTGGGGATGTAAA+AGG | + | chr5_2:77561768-77561787 | None:intergenic | 55.0% | |
| GTTGCTGCGGGACATGTTTG+AGG | - | chr5_2:77562636-77562655 | Msa0789400:intron | 55.0% | |
| ! | CAGCACCGAGATGAAAGGAG+AGG | - | chr5_2:77562772-77562791 | Msa0789400:intron | 55.0% |
| CGAGATGAAAGGAGAGGGCT+TGG | - | chr5_2:77562778-77562797 | Msa0789400:intron | 55.0% | |
| GATGAAAGGAGAGGGCTTGG+AGG | - | chr5_2:77562781-77562800 | Msa0789400:intron | 55.0% | |
| ATTCCCACCGAGCAGTCAGT+GGG | + | chr5_2:77563256-77563275 | None:intergenic | 55.0% | |
| TATTCCCACCGAGCAGTCAG+TGG | + | chr5_2:77563257-77563276 | None:intergenic | 55.0% | |
| ! | TCTCCCACTGACTGCTCGGT+GGG | - | chr5_2:77563250-77563269 | Msa0789400:intron | 60.0% |
| ! | CTCTCCCACTGACTGCTCGG+TGG | - | chr5_2:77563249-77563268 | Msa0789400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 77560394 | 77563777 | 77560394 | ID=Msa0789400;Name=Msa0789400 |
| chr5_2 | mRNA | 77560394 | 77563777 | 77560394 | ID=Msa0789400-mRNA-1;Parent=Msa0789400;Name=Msa0789400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.57|1|1|1|7|318|211 |
| chr5_2 | exon | 77560394 | 77560780 | 77560394 | ID=Msa0789400-mRNA-1:exon:23539;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77560888 | 77560986 | 77560888 | ID=Msa0789400-mRNA-1:exon:23538;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77561085 | 77561209 | 77561085 | ID=Msa0789400-mRNA-1:exon:23537;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77561309 | 77561396 | 77561309 | ID=Msa0789400-mRNA-1:exon:23536;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77562126 | 77562209 | 77562126 | ID=Msa0789400-mRNA-1:exon:23535;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77562800 | 77562894 | 77562800 | ID=Msa0789400-mRNA-1:exon:23534;Parent=Msa0789400-mRNA-1 |
| chr5_2 | exon | 77563702 | 77563777 | 77563702 | ID=Msa0789400-mRNA-1:exon:23533;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77563702 | 77563777 | 77563702 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77562800 | 77562894 | 77562800 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77562126 | 77562209 | 77562126 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77561309 | 77561396 | 77561309 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77561085 | 77561209 | 77561085 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77560888 | 77560986 | 77560888 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | CDS | 77560712 | 77560780 | 77560712 | ID=Msa0789400-mRNA-1:cds;Parent=Msa0789400-mRNA-1 |
| chr5_2 | three_prime_UTR | 77560394 | 77560711 | 77560394 | ID=Msa0789400-mRNA-1:three_prime_utr;Parent=Msa0789400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
