Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0791860 | Msa0810490 | 0.855729 | 5.188038e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACGTTGATAGTGTATT+TGG | 0.239834 | 5_3:-2947430 | Msa0791860:five_prime_UTR |
| GATCTGGTCCCAAAGAAAAT+TGG | 0.274049 | 5_3:-2948577 | Msa0791860:five_prime_UTR |
| TGGAGAACCTCCCTAGAAAA+TGG | 0.315771 | 5_3:+2948601 | None:intergenic |
| ATCTGGTCCCAAAGAAAATT+GGG | 0.321370 | 5_3:-2948576 | Msa0791860:five_prime_UTR |
| CTTCCAGCTTGCAAAGTGTA+AGG | 0.371984 | 5_3:+2948530 | None:intergenic |
| TAGGGAGGTTCTCCAGGATC+TGG | 0.402738 | 5_3:-2948593 | Msa0791860:five_prime_UTR |
| CATGCTCTTATGTCAGTGTT+AGG | 0.421391 | 5_3:+2948645 | None:intergenic |
| ATAATTTGAGACAACACAAT+AGG | 0.440748 | 5_3:+2948683 | None:intergenic |
| GTCCCTTACACTTTGCAAGC+TGG | 0.443191 | 5_3:-2948533 | Msa0791860:five_prime_UTR |
| GGCCGAATAGGACAAATCTA+TGG | 0.447835 | 5_3:-2946957 | Msa0791860:intron |
| TACCGATGAGGTTGTGCCTA+TGG | 0.458173 | 5_3:-2946915 | Msa0791860:CDS |
| AGTTAATTTCTCATTGTGGT+TGG | 0.503854 | 5_3:+2946880 | None:intergenic |
| CACGTTGATAGTGTATTTGG+TGG | 0.527154 | 5_3:-2947427 | Msa0791860:five_prime_UTR |
| ACTTAGTTTAGCAGTAATCT+CGG | 0.533017 | 5_3:+2947378 | None:intergenic |
| TTCTCAGAAGATTGATGAAG+CGG | 0.550527 | 5_3:+2946848 | None:intergenic |
| TTCCAGCTTGCAAAGTGTAA+GGG | 0.560772 | 5_3:+2948531 | None:intergenic |
| ATTCAGTTAATTTCTCATTG+TGG | 0.561267 | 5_3:+2946876 | None:intergenic |
| TGCAAAGTGTAAGGGACAGA+GGG | 0.561430 | 5_3:+2948539 | None:intergenic |
| TTCCATAGGCACAACCTCAT+CGG | 0.563450 | 5_3:+2946913 | None:intergenic |
| TCTCAGAAGATTGATGAAGC+GGG | 0.582317 | 5_3:+2946849 | None:intergenic |
| GCAAGCTGGAAGAAGTTCAA+AGG | 0.585469 | 5_3:-2948519 | Msa0791860:intron |
| AATGAAAGTGTACAGCTGAA+AGG | 0.591130 | 5_3:-2947403 | Msa0791860:five_prime_UTR |
| TTGGTAAGACATCCTTCCAT+AGG | 0.605818 | 5_3:+2946899 | None:intergenic |
| TCTGGTCCCAAAGAAAATTG+GGG | 0.637943 | 5_3:-2948575 | Msa0791860:five_prime_UTR |
| GATGAGGTTGTGCCTATGGA+AGG | 0.645263 | 5_3:-2946911 | Msa0791860:CDS |
| TTGCAAAGTGTAAGGGACAG+AGG | 0.654922 | 5_3:+2948538 | None:intergenic |
| CTGGTCCCAAAGAAAATTGG+GGG | 0.675495 | 5_3:-2948574 | Msa0791860:five_prime_UTR |
| CAATCTTCTGAGAAGAACCA+CGG | 0.691930 | 5_3:-2946839 | Msa0791860:CDS |
| GCAAAGTGTAAGGGACAGAG+GGG | 0.719305 | 5_3:+2948540 | None:intergenic |
| AAACAGAAGAGGACACACCG+TGG | 0.771346 | 5_3:+2946822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTATATTTATATGA+TGG | - | chr5_3:2946003-2946022 | Msa0791860:intron | 10.0% |
| !!! | AAATTTTCATTATTTAAAGT+TGG | - | chr5_3:2946106-2946125 | Msa0791860:intron | 10.0% |
| !!! | TAAAAATTTATATTAGTTTG+TGG | - | chr5_3:2946700-2946719 | Msa0791860:intron | 10.0% |
| !!! | ATACAAATATTTTTAAACTT+AGG | - | chr5_3:2948687-2948706 | Msa0791860:five_prime_UTR | 10.0% |
| !!! | AAGATATGTTTTTTTTTTTT+GGG | - | chr5_3:2948710-2948729 | Msa0791860:five_prime_UTR | 10.0% |
| !!! | TTCATTTTATCATATATCTT+GGG | - | chr5_3:2947478-2947497 | Msa0791860:intron | 15.0% |
| !! | TATTATTGAGTATAAACATT+AGG | + | chr5_3:2948540-2948559 | None:intergenic | 15.0% |
| !!! | GAAGATATGTTTTTTTTTTT+TGG | - | chr5_3:2948709-2948728 | Msa0791860:five_prime_UTR | 15.0% |
| !!! | AAGATTTGTTGTATTCATTT+TGG | - | chr5_3:2945782-2945801 | Msa0791860:intron | 20.0% |
| !!! | AGATTTGTTGTATTCATTTT+GGG | - | chr5_3:2945783-2945802 | Msa0791860:intron | 20.0% |
| !!! | TGTTTGTTTTTAATCAATTG+TGG | - | chr5_3:2945807-2945826 | Msa0791860:intron | 20.0% |
| !!! | TGTTTTTCTTTTTTAATCGA+TGG | - | chr5_3:2945835-2945854 | Msa0791860:intron | 20.0% |
| !! | TTGTATTGTGAAACAAAAAT+CGG | - | chr5_3:2945926-2945945 | Msa0791860:intron | 20.0% |
| !! | ACATTTGCTTATTAAAAAGA+AGG | + | chr5_3:2946140-2946159 | None:intergenic | 20.0% |
| !!! | TCTTTTTAATAAGCAAATGT+TGG | - | chr5_3:2946140-2946159 | Msa0791860:intron | 20.0% |
| !!! | CTTTTAAGAATGAATTCTAA+TGG | - | chr5_3:2946309-2946328 | Msa0791860:intron | 20.0% |
| !!! | ACATTTGAAGTATAATTGTT+CGG | + | chr5_3:2946477-2946496 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAGCTTCATACAT+AGG | - | chr5_3:2946894-2946913 | Msa0791860:CDS | 20.0% |
| !!! | TTTTTTAAGCTTCATACATA+GGG | - | chr5_3:2946895-2946914 | Msa0791860:CDS | 20.0% |
| !! | ATATAAAAAGAAATCTCTTC+TGG | + | chr5_3:2946945-2946964 | None:intergenic | 20.0% |
| !!! | AGAAGAGATTTCTTTTTATA+TGG | - | chr5_3:2946944-2946963 | Msa0791860:exon | 20.0% |
| !!! | TGTGTGTTTTTTATTCAAAT+TGG | - | chr5_3:2947216-2947235 | Msa0791860:intron | 20.0% |
| !!! | CTTCATTTTATCATATATCT+TGG | - | chr5_3:2947477-2947496 | Msa0791860:intron | 20.0% |
| !!! | TTTGTTTTTTCTTCCTAAAT+CGG | - | chr5_3:2947526-2947545 | Msa0791860:intron | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr5_3:2947773-2947792 | Msa0791860:intron | 20.0% |
| !! | ACTAAACAAAATTGGATAAA+AGG | - | chr5_3:2947781-2947800 | Msa0791860:intron | 20.0% |
| !!! | TGGATAAAAGGTTTTATTAA+AGG | - | chr5_3:2947793-2947812 | Msa0791860:intron | 20.0% |
| !!! | GAATAGTAAAGATTATTTTG+TGG | - | chr5_3:2948114-2948133 | Msa0791860:intron | 20.0% |
| !!! | AGTTTTGTTTTTCTTGAATT+TGG | - | chr5_3:2948382-2948401 | Msa0791860:intron | 20.0% |
| !!! | TTTTTATAGTTACAGTATAC+AGG | + | chr5_3:2948455-2948474 | None:intergenic | 20.0% |
| !! | TCTAGTGAAATAAAGTTATT+GGG | + | chr5_3:2948636-2948655 | None:intergenic | 20.0% |
| !! | ATAATTTGAGACAACACAAT+AGG | + | chr5_3:2945514-2945533 | None:intergenic | 25.0% |
| !!! | TCATTTTAAGTAGCTACTAA+AGG | + | chr5_3:2946087-2946106 | None:intergenic | 25.0% |
| !!! | TAATTTTGATAAGTTGAACG+CGG | - | chr5_3:2946434-2946453 | Msa0791860:intron | 25.0% |
| ! | AAAGAGATTTCTTCACTAAA+AGG | - | chr5_3:2946867-2946886 | Msa0791860:CDS | 25.0% |
| ! | AAGAGATTTCTTCACTAAAA+GGG | - | chr5_3:2946868-2946887 | Msa0791860:CDS | 25.0% |
| !! | TTCTTTTTATATGGCACATA+AGG | - | chr5_3:2946953-2946972 | Msa0791860:intron | 25.0% |
| ! | TGAATTCATGTGAATATATG+TGG | - | chr5_3:2946990-2947009 | Msa0791860:intron | 25.0% |
| ! | AATGTTGTCAATATCATCTA+AGG | - | chr5_3:2947047-2947066 | Msa0791860:intron | 25.0% |
| ! | ATTCAGTTAATTTCTCATTG+TGG | + | chr5_3:2947321-2947340 | None:intergenic | 25.0% |
| ! | AAAATAAAAAGACTCACAAG+AGG | + | chr5_3:2947445-2947464 | None:intergenic | 25.0% |
| ! | ACAAATAAATAGTCCGATTT+AGG | + | chr5_3:2947542-2947561 | None:intergenic | 25.0% |
| !!! | ACATTGTTTTTGAATTCACA+AGG | - | chr5_3:2947585-2947604 | Msa0791860:intron | 25.0% |
| ! | CACAATGGAATTGTATAAAA+TGG | - | chr5_3:2947643-2947662 | Msa0791860:intron | 25.0% |
| ! | TGAGAAATGTATATAAGAAG+TGG | - | chr5_3:2947706-2947725 | Msa0791860:intron | 25.0% |
| ! | GTTGTACATGAAATTAAAGT+TGG | - | chr5_3:2947730-2947749 | Msa0791860:intron | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr5_3:2947757-2947776 | None:intergenic | 25.0% |
| !! | TAATGAATTTAGTTGGTTCT+TGG | - | chr5_3:2947935-2947954 | Msa0791860:intron | 25.0% |
| !! | ATTTTACAACAATTTCCTGT+TGG | - | chr5_3:2948031-2948050 | Msa0791860:intron | 25.0% |
| !! | TTTTACAACAATTTCCTGTT+GGG | - | chr5_3:2948032-2948051 | Msa0791860:intron | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr5_3:2948206-2948225 | Msa0791860:intron | 25.0% |
| !! | ATAAACCATTTTCTACCATT+TGG | - | chr5_3:2948242-2948261 | Msa0791860:intron | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | chr5_3:2948280-2948299 | None:intergenic | 25.0% |
| !!! | TAATATGTTGATTTTCTGTG+AGG | - | chr5_3:2948355-2948374 | Msa0791860:intron | 25.0% |
| ! | AGTTACTACTGCTAAATATA+TGG | + | chr5_3:2948485-2948504 | None:intergenic | 25.0% |
| ! | AAAGAATTTCATTCAGTTGA+AGG | - | chr5_3:2948564-2948583 | Msa0791860:five_prime_UTR | 25.0% |
| !! | TTGTTGAATGAATGTTACTT+TGG | - | chr5_3:2948610-2948629 | Msa0791860:five_prime_UTR | 25.0% |
| ! | GTCTAGTGAAATAAAGTTAT+TGG | + | chr5_3:2948637-2948656 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTTTTTTGGGTC+AGG | - | chr5_3:2948715-2948734 | Msa0791860:five_prime_UTR | 25.0% |
| ! | TAGCTAAACATCCATTTTCT+AGG | - | chr5_3:2945582-2945601 | Msa0791860:intron | 30.0% |
| ! | AGCTAAACATCCATTTTCTA+GGG | - | chr5_3:2945583-2945602 | Msa0791860:intron | 30.0% |
| TGTATCTGAGCTTTACATAT+AGG | - | chr5_3:2945700-2945719 | Msa0791860:intron | 30.0% | |
| !!! | TCTTTTTTAATCGATGGTGA+CGG | - | chr5_3:2945841-2945860 | Msa0791860:intron | 30.0% |
| TATGATGGTATTGTATCTGT+TGG | - | chr5_3:2946018-2946037 | Msa0791860:intron | 30.0% | |
| !! | TAAATCTAGTCTTACATGCA+GGG | + | chr5_3:2946416-2946435 | None:intergenic | 30.0% |
| !! | TTAAATCTAGTCTTACATGC+AGG | + | chr5_3:2946417-2946436 | None:intergenic | 30.0% |
| !!! | TGGTTTTAAATGCCAGTTTA+TGG | - | chr5_3:2946720-2946739 | Msa0791860:intron | 30.0% |
| !!! | GGTTTTAAATGCCAGTTTAT+GGG | - | chr5_3:2946721-2946740 | Msa0791860:intron | 30.0% |
| ! | CAAAAGTATAACCCATAAAC+TGG | + | chr5_3:2946735-2946754 | None:intergenic | 30.0% |
| !! | TTTATGGGTTATACTTTTGC+AGG | - | chr5_3:2946736-2946755 | Msa0791860:intron | 30.0% |
| !! | TTATGGGTTATACTTTTGCA+GGG | - | chr5_3:2946737-2946756 | Msa0791860:intron | 30.0% |
| !! | TATCACGTTGATAGTGTATT+TGG | - | chr5_3:2946764-2946783 | Msa0791860:intron | 30.0% |
| ACTTAGTTTAGCAGTAATCT+CGG | + | chr5_3:2946819-2946838 | None:intergenic | 30.0% | |
| ! | AATCTCTTTTTACACAGAGT+CGG | + | chr5_3:2946856-2946875 | None:intergenic | 30.0% |
| AGAGATTTCTTCACTAAAAG+GGG | - | chr5_3:2946869-2946888 | Msa0791860:CDS | 30.0% | |
| ACACATGAGTTACATATTGA+AGG | + | chr5_3:2947027-2947046 | None:intergenic | 30.0% | |
| TATGTCACAATGACAACTAA+GGG | + | chr5_3:2947091-2947110 | None:intergenic | 30.0% | |
| TTAGTTGTCATTGTGACATA+CGG | - | chr5_3:2947091-2947110 | Msa0791860:intron | 30.0% | |
| TTTATTCAAATTGGCCGAAT+AGG | - | chr5_3:2947225-2947244 | Msa0791860:intron | 30.0% | |
| ATCCATAGATTTGTCCTATT+CGG | + | chr5_3:2947242-2947261 | None:intergenic | 30.0% | |
| AGTTAATTTCTCATTGTGGT+TGG | + | chr5_3:2947317-2947336 | None:intergenic | 30.0% | |
| TTATCATATATCTTGGGTAC+TGG | - | chr5_3:2947484-2947503 | Msa0791860:intron | 30.0% | |
| GTTCAATTCCATAATCTACT+AGG | - | chr5_3:2947560-2947579 | Msa0791860:intron | 30.0% | |
| !! | TTTGATGGATTTAGACACAA+TGG | - | chr5_3:2947628-2947647 | Msa0791860:intron | 30.0% |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr5_3:2947891-2947910 | None:intergenic | 30.0% | |
| GTTGGACTAATGAATTTAGT+TGG | - | chr5_3:2947928-2947947 | Msa0791860:intron | 30.0% | |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr5_3:2947940-2947959 | Msa0791860:intron | 30.0% |
| !! | TATTTGTACTGCTGTTTCAT+TGG | - | chr5_3:2948141-2948160 | Msa0791860:intron | 30.0% |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr5_3:2948212-2948231 | Msa0791860:intron | 30.0% |
| TTGTTCCAAATGGTAGAAAA+TGG | + | chr5_3:2948250-2948269 | None:intergenic | 30.0% | |
| TGCAAATGAGTTAGTATGTA+TGG | - | chr5_3:2948326-2948345 | Msa0791860:intron | 30.0% | |
| GATAGCATACATAAGTTACA+TGG | + | chr5_3:2948512-2948531 | None:intergenic | 30.0% | |
| !! | TAAACATCCATTTTCTAGGG+AGG | - | chr5_3:2945586-2945605 | Msa0791860:intron | 35.0% |
| ATCTGGTCCCAAAGAAAATT+GGG | - | chr5_3:2945618-2945637 | Msa0791860:intron | 35.0% | |
| TTGTGAAACAAAAATCGGAG+AGG | - | chr5_3:2945931-2945950 | Msa0791860:intron | 35.0% | |
| TGTGAAACAAAAATCGGAGA+GGG | - | chr5_3:2945932-2945951 | Msa0791860:intron | 35.0% | |
| AAAATAACCGTCCTCTAAGT+CGG | + | chr5_3:2945991-2946010 | None:intergenic | 35.0% | |
| AGTATTAAGAGTTTGAACCC+TGG | - | chr5_3:2946176-2946195 | Msa0791860:intron | 35.0% | |
| CTCAACACATGAAAGAGTTT+GGG | + | chr5_3:2946210-2946229 | None:intergenic | 35.0% | |
| TCTCAACACATGAAAGAGTT+TGG | + | chr5_3:2946211-2946230 | None:intergenic | 35.0% | |
| TAACCAAGCAACAATAGAAG+CGG | + | chr5_3:2946270-2946289 | None:intergenic | 35.0% | |
| ATGGAAGTAAACACAGTTGT+AGG | - | chr5_3:2946328-2946347 | Msa0791860:intron | 35.0% | |
| !! | GACTTTGAGATAAAGCCTAA+TGG | - | chr5_3:2946377-2946396 | Msa0791860:intron | 35.0% |
| !! | AAATCTAGTCTTACATGCAG+GGG | + | chr5_3:2946415-2946434 | None:intergenic | 35.0% |
| ! | TCGTTAGTCTAGTAACTTTC+AGG | + | chr5_3:2946570-2946589 | None:intergenic | 35.0% |
| !! | TATGGGTTATACTTTTGCAG+GGG | - | chr5_3:2946738-2946757 | Msa0791860:intron | 35.0% |
| ! | AATGAAAGTGTACAGCTGAA+AGG | - | chr5_3:2946791-2946810 | Msa0791860:CDS | 35.0% |
| GTATGTCACAATGACAACTA+AGG | + | chr5_3:2947092-2947111 | None:intergenic | 35.0% | |
| CTAAGTTACTGAAGTTTGAC+AGG | + | chr5_3:2947132-2947151 | None:intergenic | 35.0% | |
| CTGTCAAACTTCAGTAACTT+AGG | - | chr5_3:2947130-2947149 | Msa0791860:intron | 35.0% | |
| TCAAACTTCAGTAACTTAGG+TGG | - | chr5_3:2947133-2947152 | Msa0791860:intron | 35.0% | |
| !!! | TCAAGTTGATTTTACCGATG+AGG | - | chr5_3:2947267-2947286 | Msa0791860:intron | 35.0% |
| TTCTCAGAAGATTGATGAAG+CGG | + | chr5_3:2947349-2947368 | None:intergenic | 35.0% | |
| CAATGTGTCCTAGTAGATTA+TGG | + | chr5_3:2947571-2947590 | None:intergenic | 35.0% | |
| ACATTATTCAGTCCAAGGAT+AGG | - | chr5_3:2947681-2947700 | Msa0791860:intron | 35.0% | |
| CATTATTCAGTCCAAGGATA+GGG | - | chr5_3:2947682-2947701 | Msa0791860:intron | 35.0% | |
| AACATTGACAATGGAAGTTG+TGG | + | chr5_3:2947826-2947845 | None:intergenic | 35.0% | |
| ACTGAGTTCAACATTGACAA+TGG | + | chr5_3:2947835-2947854 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr5_3:2947876-2947895 | Msa0791860:intron | 35.0% |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr5_3:2947892-2947911 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr5_3:2947910-2947929 | Msa0791860:intron | 35.0% | |
| !! | TGGTTTTGCAAAACTGGTAT+TGG | - | chr5_3:2947976-2947995 | Msa0791860:intron | 35.0% |
| ! | GGTTTTGCAAAACTGGTATT+GGG | - | chr5_3:2947977-2947996 | Msa0791860:intron | 35.0% |
| ! | CAATTTCCTGTTGGGATTTT+AGG | - | chr5_3:2948040-2948059 | Msa0791860:intron | 35.0% |
| TTGAATTAGCTATGTGTGCT+AGG | - | chr5_3:2948086-2948105 | Msa0791860:intron | 35.0% | |
| TGAATTAGCTATGTGTGCTA+GGG | - | chr5_3:2948087-2948106 | Msa0791860:intron | 35.0% | |
| ! | TGGACTTTTCTTGTTCCAAA+TGG | + | chr5_3:2948260-2948279 | None:intergenic | 35.0% |
| CATGCTCTTATGTCAGTGTT+AGG | + | chr5_3:2945552-2945571 | None:intergenic | 40.0% | |
| GATCTGGTCCCAAAGAAAAT+TGG | - | chr5_3:2945617-2945636 | Msa0791860:intron | 40.0% | |
| TCTGGTCCCAAAGAAAATTG+GGG | - | chr5_3:2945619-2945638 | Msa0791860:intron | 40.0% | |
| ! | AGTTGCCCCCAATTTTCTTT+GGG | + | chr5_3:2945628-2945647 | None:intergenic | 40.0% |
| ! | AAGTTGCCCCCAATTTTCTT+TGG | + | chr5_3:2945629-2945648 | None:intergenic | 40.0% |
| TTCCAGCTTGCAAAGTGTAA+GGG | + | chr5_3:2945666-2945685 | None:intergenic | 40.0% | |
| !! | TAATCGATGGTGACGGATTT+AGG | - | chr5_3:2945848-2945867 | Msa0791860:intron | 40.0% |
| !! | AATCGATGGTGACGGATTTA+GGG | - | chr5_3:2945849-2945868 | Msa0791860:intron | 40.0% |
| ! | CGGATTTAGGGTGAATTTGT+AGG | - | chr5_3:2945861-2945880 | Msa0791860:intron | 40.0% |
| TTAGGGTGAATTTGTAGGTC+CGG | - | chr5_3:2945866-2945885 | Msa0791860:intron | 40.0% | |
| CCAAATCCTTGTTCAATCAC+CGG | + | chr5_3:2945888-2945907 | None:intergenic | 40.0% | |
| ACACATGAAAGAGTTTGGGA+AGG | + | chr5_3:2946206-2946225 | None:intergenic | 40.0% | |
| AAGCAACAATAGAAGCGGTA+GGG | + | chr5_3:2946265-2946284 | None:intergenic | 40.0% | |
| GGGCAATCTAGAAAACCATT+AGG | + | chr5_3:2946395-2946414 | None:intergenic | 40.0% | |
| !! | CACGTTGATAGTGTATTTGG+TGG | - | chr5_3:2946767-2946786 | Msa0791860:intron | 40.0% |
| ! | AGGTGGCTGTCTTATTGTAT+TGG | - | chr5_3:2947150-2947169 | Msa0791860:intron | 40.0% |
| TTGGTAAGACATCCTTCCAT+AGG | + | chr5_3:2947298-2947317 | None:intergenic | 40.0% | |
| TCTCAGAAGATTGATGAAGC+GGG | + | chr5_3:2947348-2947367 | None:intergenic | 40.0% | |
| ! | CAATCTTCTGAGAAGAACCA+CGG | - | chr5_3:2947355-2947374 | Msa0791860:intron | 40.0% |
| !!! | TGTCCTCTTCTGTTTTTGAG+TGG | - | chr5_3:2947380-2947399 | Msa0791860:five_prime_UTR | 40.0% |
| !!! | GTCCTCTTCTGTTTTTGAGT+GGG | - | chr5_3:2947381-2947400 | Msa0791860:five_prime_UTR | 40.0% |
| ! | GCAGATGTCGATCATTTTGA+TGG | - | chr5_3:2947613-2947632 | Msa0791860:intron | 40.0% |
| AGCTGACATTATTCAGTCCA+AGG | - | chr5_3:2947676-2947695 | Msa0791860:intron | 40.0% | |
| ACATTTCTCATCCCTATCCT+TGG | + | chr5_3:2947696-2947715 | None:intergenic | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr5_3:2947875-2947894 | Msa0791860:intron | 40.0% |
| ! | CCAGTTTTGCAAAACCAAGT+TGG | + | chr5_3:2947973-2947992 | None:intergenic | 40.0% |
| !!! | CCAACTTGGTTTTGCAAAAC+TGG | - | chr5_3:2947970-2947989 | Msa0791860:intron | 40.0% |
| ! | AAAACTGGTATTGGGATTGC+AGG | - | chr5_3:2947985-2948004 | Msa0791860:intron | 40.0% |
| ! | GTATTGGGATTGCAGGTTTT+AGG | - | chr5_3:2947992-2948011 | Msa0791860:intron | 40.0% |
| !!! | GCAGGTTTTAGGAACATCTT+AGG | - | chr5_3:2948003-2948022 | Msa0791860:intron | 40.0% |
| AACACACCTAAAATCCCAAC+AGG | + | chr5_3:2948049-2948068 | None:intergenic | 40.0% | |
| !! | TGTACTGCTGTTTCATTGGT+TGG | - | chr5_3:2948145-2948164 | Msa0791860:intron | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr5_3:2948171-2948190 | Msa0791860:intron | 40.0% |
| ! | TGGTTTTTCCTTGTCATGTG+AGG | - | chr5_3:2948402-2948421 | Msa0791860:intron | 40.0% |
| CTTGCTAAGGTTCTACTTCT+AGG | - | chr5_3:2948426-2948445 | Msa0791860:intron | 40.0% | |
| TGGAGAACCTCCCTAGAAAA+TGG | + | chr5_3:2945596-2945615 | None:intergenic | 45.0% | |
| !! | ATTTTCTAGGGAGGTTCTCC+AGG | - | chr5_3:2945595-2945614 | Msa0791860:intron | 45.0% |
| !!! | TTTTCTTTGGGACCAGATCC+TGG | + | chr5_3:2945616-2945635 | None:intergenic | 45.0% |
| CTGGTCCCAAAGAAAATTGG+GGG | - | chr5_3:2945620-2945639 | Msa0791860:intron | 45.0% | |
| TGCAAAGTGTAAGGGACAGA+GGG | + | chr5_3:2945658-2945677 | None:intergenic | 45.0% | |
| TTGCAAAGTGTAAGGGACAG+AGG | + | chr5_3:2945659-2945678 | None:intergenic | 45.0% | |
| CTTCCAGCTTGCAAAGTGTA+AGG | + | chr5_3:2945667-2945686 | None:intergenic | 45.0% | |
| GCAAGCTGGAAGAAGTTCAA+AGG | - | chr5_3:2945675-2945694 | Msa0791860:intron | 45.0% | |
| CCGGTGATTGAACAAGGATT+TGG | - | chr5_3:2945885-2945904 | Msa0791860:intron | 45.0% | |
| ACGTGCAAGCATTCAATCAC+CGG | + | chr5_3:2945966-2945985 | None:intergenic | 45.0% | |
| CATGAAAGAGTTTGGGAAGG+AGG | + | chr5_3:2946203-2946222 | None:intergenic | 45.0% | |
| CAAGCAACAATAGAAGCGGT+AGG | + | chr5_3:2946266-2946285 | None:intergenic | 45.0% | |
| CTACCGCTTCTATTGTTGCT+TGG | - | chr5_3:2946264-2946283 | Msa0791860:intron | 45.0% | |
| GTTGTAGGATGTAGCTCATG+TGG | - | chr5_3:2946343-2946362 | Msa0791860:intron | 45.0% | |
| GGCCGAATAGGACAAATCTA+TGG | - | chr5_3:2947237-2947256 | Msa0791860:intron | 45.0% | |
| TTCCATAGGCACAACCTCAT+CGG | + | chr5_3:2947284-2947303 | None:intergenic | 45.0% | |
| CTCCCACTCAAAAACAGAAG+AGG | + | chr5_3:2947386-2947405 | None:intergenic | 45.0% | |
| !!! | CTCTTCTGTTTTTGAGTGGG+AGG | - | chr5_3:2947384-2947403 | Msa0791860:five_prime_UTR | 45.0% |
| !!! | GGTGTGTTGCTTTTGTTTGC+TGG | - | chr5_3:2948061-2948080 | Msa0791860:intron | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr5_3:2948175-2948194 | Msa0791860:intron | 45.0% |
| TAGCAAGTCCTCACATGACA+AGG | + | chr5_3:2948413-2948432 | None:intergenic | 45.0% | |
| !! | TGTCATGTGAGGACTTGCTA+AGG | - | chr5_3:2948413-2948432 | Msa0791860:intron | 45.0% |
| !!! | TTTATAATTTTAAATTTGTT+TGG | + | chr5_3:2946516-2946535 | None:intergenic | 5.0% |
| GCAAAGTGTAAGGGACAGAG+GGG | + | chr5_3:2945657-2945676 | None:intergenic | 50.0% | |
| GTCCCTTACACTTTGCAAGC+TGG | - | chr5_3:2945661-2945680 | Msa0791860:intron | 50.0% | |
| GTAGGTCCGGTGATTGAACA+AGG | - | chr5_3:2945879-2945898 | Msa0791860:intron | 50.0% | |
| ! | CTTGCACGTAACCGACTTAG+AGG | - | chr5_3:2945977-2945996 | Msa0791860:intron | 50.0% |
| ! | CACGTAACCGACTTAGAGGA+CGG | - | chr5_3:2945981-2946000 | Msa0791860:intron | 50.0% |
| TACCGATGAGGTTGTGCCTA+TGG | - | chr5_3:2947279-2947298 | Msa0791860:intron | 50.0% | |
| GATGAGGTTGTGCCTATGGA+AGG | - | chr5_3:2947283-2947302 | Msa0791860:intron | 50.0% | |
| AAACAGAAGAGGACACACCG+TGG | + | chr5_3:2947375-2947394 | None:intergenic | 50.0% | |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr5_3:2948163-2948182 | Msa0791860:intron | 50.0% |
| TAGGGAGGTTCTCCAGGATC+TGG | - | chr5_3:2945601-2945620 | Msa0791860:intron | 55.0% | |
| GAGTTTGGGAAGGAGGTCCA+GGG | + | chr5_3:2946196-2946215 | None:intergenic | 55.0% | |
| AGAGTTTGGGAAGGAGGTCC+AGG | + | chr5_3:2946197-2946216 | None:intergenic | 55.0% | |
| !! | GGTTTGGTGCTGTGCCAACT+TGG | - | chr5_3:2947956-2947975 | Msa0791860:intron | 55.0% |
| ATCGGAGAGGGTTTCGTCGC+CGG | - | chr5_3:2945944-2945963 | Msa0791860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2945474 | 2948742 | 2945474 | ID=Msa0791860;Name=Msa0791860 |
| chr5_3 | mRNA | 2945474 | 2948742 | 2945474 | ID=Msa0791860-mRNA-1;Parent=Msa0791860;Name=Msa0791860-mRNA-1;_AED=0.41;_eAED=0.41;_QI=319|0|0.2|0.8|0|0.6|5|0|66 |
| chr5_3 | exon | 2945474 | 2945479 | 2945474 | ID=Msa0791860-mRNA-1:exon:1248;Parent=Msa0791860-mRNA-1 |
| chr5_3 | exon | 2946769 | 2946969 | 2946769 | ID=Msa0791860-mRNA-1:exon:1247;Parent=Msa0791860-mRNA-1 |
| chr5_3 | exon | 2947021 | 2947028 | 2947021 | ID=Msa0791860-mRNA-1:exon:1246;Parent=Msa0791860-mRNA-1 |
| chr5_3 | exon | 2947380 | 2947458 | 2947380 | ID=Msa0791860-mRNA-1:exon:1245;Parent=Msa0791860-mRNA-1 |
| chr5_3 | exon | 2948520 | 2948742 | 2948520 | ID=Msa0791860-mRNA-1:exon:1244;Parent=Msa0791860-mRNA-1 |
| chr5_3 | five_prime_UTR | 2948520 | 2948742 | 2948520 | ID=Msa0791860-mRNA-1:five_prime_utr;Parent=Msa0791860-mRNA-1 |
| chr5_3 | five_prime_UTR | 2947380 | 2947458 | 2947380 | ID=Msa0791860-mRNA-1:five_prime_utr;Parent=Msa0791860-mRNA-1 |
| chr5_3 | five_prime_UTR | 2947021 | 2947028 | 2947021 | ID=Msa0791860-mRNA-1:five_prime_utr;Parent=Msa0791860-mRNA-1 |
| chr5_3 | five_prime_UTR | 2946961 | 2946969 | 2946961 | ID=Msa0791860-mRNA-1:five_prime_utr;Parent=Msa0791860-mRNA-1 |
| chr5_3 | CDS | 2946769 | 2946960 | 2946769 | ID=Msa0791860-mRNA-1:cds;Parent=Msa0791860-mRNA-1 |
| chr5_3 | CDS | 2945474 | 2945479 | 2945474 | ID=Msa0791860-mRNA-1:cds;Parent=Msa0791860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
