Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793050 | XP_003599445.2 | 99.585 | 241 | 1 | 0 | 1 | 241 | 812 | 1052 | 2.81e-171 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793050 | sp|Q9LFS8|SMC5_ARATH | 79.476 | 229 | 47 | 0 | 1 | 229 | 811 | 1039 | 8.80e-132 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793050 | G7J0X6 | 99.585 | 241 | 1 | 0 | 1 | 241 | 812 | 1052 | 1.34e-171 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0448130 | Msa0793050 | 0.803296 | 3.730706e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793050 | MtrunA17_Chr3g0090011 | 99.585 | 241 | 1 | 0 | 1 | 241 | 812 | 1052 | 2.58e-175 | 509 |
| Msa0793050 | MtrunA17_Chr4g0064111 | 97.925 | 241 | 5 | 0 | 1 | 241 | 801 | 1041 | 1.70e-172 | 502 |
| Msa0793050 | MtrunA17_Chr5g0414811 | 89.212 | 241 | 26 | 0 | 1 | 241 | 1 | 241 | 1.48e-163 | 451 |
| Msa0793050 | MtrunA17_Chr5g0414841 | 96.262 | 107 | 4 | 0 | 116 | 222 | 1 | 107 | 8.07e-74 | 219 |
| Msa0793050 | MtrunA17_Chr5g0414851 | 59.281 | 167 | 18 | 2 | 1 | 117 | 57 | 223 | 5.28e-56 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793050 | AT5G15920.1 | 79.476 | 229 | 47 | 0 | 1 | 229 | 811 | 1039 | 8.94e-133 | 400 |
Find 79 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCTTCCTTTCATTTAT+TGG | 0.074155 | 5_3:+4997890 | None:intergenic |
| GACTAAAAGTTTCATTTATC+TGG | 0.131837 | 5_3:+4998598 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.146895 | 5_3:+4998010 | None:intergenic |
| AGCACTCACTGTGGTGTATT+TGG | 0.192925 | 5_3:+4997839 | None:intergenic |
| GATATGGACTTTGATCAATT+TGG | 0.248571 | 5_3:-4998446 | Msa0793050:CDS |
| ATATGTTATTATTGACAAAA+AGG | 0.257309 | 5_3:+4999168 | None:intergenic |
| GCAGATCTGGTAACAACTTT+GGG | 0.277791 | 5_3:+4997443 | None:intergenic |
| TACATATAAAAGTCAAATTC+AGG | 0.356363 | 5_3:-4998421 | Msa0793050:intron |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 5_3:-4998570 | Msa0793050:CDS |
| CGAAAGGGTTAAAGAGTGTC+TGG | 0.371652 | 5_3:+4997091 | None:intergenic |
| TGCAGATCTGGTAACAACTT+TGG | 0.372012 | 5_3:+4997442 | None:intergenic |
| TACAAGGTGTCTGGCTGAAC+TGG | 0.374002 | 5_3:-4999002 | Msa0793050:CDS |
| CTTCTCAGATGAGCATGATA+TGG | 0.377932 | 5_3:-4998462 | Msa0793050:intron |
| GGCTGAACTGGATAACATTA+AGG | 0.392082 | 5_3:-4998990 | Msa0793050:intron |
| TGGCTTGAGAAGTTGTATCT+TGG | 0.401353 | 5_3:+4999198 | None:intergenic |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 5_3:+4997430 | None:intergenic |
| TATGAGAAATTACCCTTTGA+GGG | 0.412265 | 5_3:+4997364 | None:intergenic |
| TTAAAGTAAAACAAACACTA+TGG | 0.417066 | 5_3:-4997213 | Msa0793050:exon |
| TCTCTAGGTCGGGTGTAAGC+CGG | 0.437312 | 5_3:+5000630 | None:intergenic |
| ACTAAAAGTTTCATTTATCT+GGG | 0.451888 | 5_3:+4998599 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.452120 | 5_3:-4999153 | Msa0793050:CDS |
| CTCAGCGCCCATCATCAATC+TGG | 0.453912 | 5_3:-4998177 | Msa0793050:CDS |
| AAGAAATTCTTTCTCTAGGT+CGG | 0.464186 | 5_3:+5000619 | None:intergenic |
| AGAAATTCTTTCTCTAGGTC+GGG | 0.466784 | 5_3:+5000620 | None:intergenic |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 5_3:-4999231 | Msa0793050:CDS |
| CCTCAAGAAATTCTTTCTCT+AGG | 0.472574 | 5_3:+5000615 | None:intergenic |
| CTCTAGGTCGGGTGTAAGCC+GGG | 0.475153 | 5_3:+5000631 | None:intergenic |
| GTTGTTGATGAGATCAATCA+AGG | 0.485873 | 5_3:-4998001 | Msa0793050:intron |
| GAAGGAATCTACAAGGTGTC+TGG | 0.489449 | 5_3:-4999011 | Msa0793050:CDS |
| ACCGCATTATTTACAACCAA+TGG | 0.489485 | 5_3:+4997052 | None:intergenic |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 5_3:+4998011 | None:intergenic |
| GTATGAGAAATTACCCTTTG+AGG | 0.496181 | 5_3:+4997363 | None:intergenic |
| AAATAATGCGGTAGAGGGTG+TGG | 0.502961 | 5_3:-4997041 | Msa0793050:three_prime_UTR |
| TTAGATGCCTACTACAATTG+AGG | 0.503994 | 5_3:-4999237 | Msa0793050:intron |
| TAGTATAAAGAGTAAGAATA+CGG | 0.504446 | 5_3:+4996994 | None:intergenic |
| TCAATTCAACATCTTCGAAA+GGG | 0.514552 | 5_3:+4997076 | None:intergenic |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 5_3:+4999230 | None:intergenic |
| GGTTGTAAATAATGCGGTAG+AGG | 0.519005 | 5_3:-4997047 | Msa0793050:three_prime_UTR |
| ATCAATTCAACATCTTCGAA+AGG | 0.524258 | 5_3:+4997075 | None:intergenic |
| GTAGACAAGCTTGACTGTCT+AGG | 0.528502 | 5_3:-4997019 | Msa0793050:three_prime_UTR |
| GTACCCCTCCAGATTGATGA+TGG | 0.530960 | 5_3:+4998169 | None:intergenic |
| ATATGAGGCTCGTCAGAGAC+AGG | 0.533677 | 5_3:-4999138 | Msa0793050:intron |
| TTTGAGGGTTGCTCAATCCA+AGG | 0.533889 | 5_3:+4997379 | None:intergenic |
| CCACGAGGTTTCTCAATGTA+GGG | 0.535694 | 5_3:+4998622 | None:intergenic |
| TTGGATTGAGCAACCCTCAA+AGG | 0.539296 | 5_3:-4997377 | Msa0793050:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.539741 | 5_3:-4998555 | Msa0793050:intron |
| AAAACTTGATGCTGACAAGA+AGG | 0.540155 | 5_3:-4999029 | Msa0793050:CDS |
| ATACTATTGCTTATATTCAA+CGG | 0.544161 | 5_3:-4996977 | Msa0793050:three_prime_UTR |
| GAAAGGGTTAAAGAGTGTCT+GGG | 0.545847 | 5_3:+4997092 | None:intergenic |
| TGGATTGAGCAACCCTCAAA+GGG | 0.546089 | 5_3:-4997376 | Msa0793050:intron |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 5_3:-4997396 | Msa0793050:CDS |
| TGATAATCAGTGTGGACCGC+TGG | 0.555933 | 5_3:-4997281 | Msa0793050:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 5_3:-4997248 | Msa0793050:CDS |
| AAGATGTTGAATTGATCCAT+TGG | 0.560335 | 5_3:-4997068 | Msa0793050:three_prime_UTR |
| TAAATAAGAAATTAAATAAG+CGG | 0.566027 | 5_3:+4996941 | None:intergenic |
| TTGAGGGTTGCTCAATCCAA+GGG | 0.572526 | 5_3:+4997380 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 5_3:-4997257 | Msa0793050:CDS |
| AGCGCCCATCATCAATCTGG+AGG | 0.582072 | 5_3:-4998174 | Msa0793050:CDS |
| ATTATGCTAAGTCAATTGCC+CGG | 0.590594 | 5_3:-5000649 | Msa0793050:five_prime_UTR |
| GTTGTAAATAATGCGGTAGA+GGG | 0.593377 | 5_3:-4997046 | Msa0793050:three_prime_UTR |
| GAATGGATCCAATAAATGAA+AGG | 0.594716 | 5_3:-4997898 | Msa0793050:CDS |
| AGAACGTAGACAGAAGCTTA+CGG | 0.596768 | 5_3:-5000681 | Msa0793050:five_prime_UTR |
| TGTGGACCGCTGGTGATCGA+TGG | 0.597266 | 5_3:-4997271 | Msa0793050:CDS |
| GCCACGAGGTTTCTCAATGT+AGG | 0.601181 | 5_3:+4998621 | None:intergenic |
| CGCCCATCATCAATCTGGAG+GGG | 0.603760 | 5_3:-4998172 | Msa0793050:intron |
| GCGCCCATCATCAATCTGGA+GGG | 0.610882 | 5_3:-4998173 | Msa0793050:CDS |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 5_3:-4997403 | Msa0793050:CDS |
| CTGACAAGAAGGAATCTACA+AGG | 0.619435 | 5_3:-4999018 | Msa0793050:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.619544 | 5_3:+4998170 | None:intergenic |
| CAGATCTGGTAACAACTTTG+GGG | 0.622648 | 5_3:+4997444 | None:intergenic |
| TCCATTGGTTGTAAATAATG+CGG | 0.629114 | 5_3:-4997053 | Msa0793050:three_prime_UTR |
| CCTAGAGAAAGAATTTCTTG+AGG | 0.632238 | 5_3:-5000615 | Msa0793050:intron |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 5_3:-4997431 | Msa0793050:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 5_3:-5000849 | Msa0793050:five_prime_UTR |
| TCATGGGAAATGCTAACAAG+TGG | 0.647470 | 5_3:-4997117 | Msa0793050:three_prime_UTR |
| AAAGGGTTAAAGAGTGTCTG+GGG | 0.691231 | 5_3:+4997093 | None:intergenic |
| TTTCATTTATCTGGGCCACG+AGG | 0.696303 | 5_3:+4998607 | None:intergenic |
| CCCTACATTGAGAAACCTCG+TGG | 0.704731 | 5_3:-4998622 | Msa0793050:CDS |
| AATACTCCATCGATCACCAG+CGG | 0.716795 | 5_3:+4997265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+AGG | + | chr5_3:4999439-4999458 | None:intergenic | 0.0% |
| !! | ATAATATTAAAAACAAGAAA+AGG | + | chr5_3:4997167-4997186 | None:intergenic | 10.0% |
| !! | TAAAATAAAAACATTATGAT+GGG | - | chr5_3:4997360-4997379 | Msa0793050:intron | 10.0% |
| !! | TAAATAAGAAATTAAATAAG+CGG | + | chr5_3:5000793-5000812 | None:intergenic | 10.0% |
| !! | GTAAAATAAAAACATTATGA+TGG | - | chr5_3:4997359-4997378 | Msa0793050:intron | 15.0% |
| !! | AAAATAAAAACATTATGATG+GGG | - | chr5_3:4997361-4997380 | Msa0793050:intron | 15.0% |
| !!! | TTAAATTTTACATCTAAACT+TGG | + | chr5_3:4997869-4997888 | None:intergenic | 15.0% |
| !! | AGTTAAAATTATCATATTTG+AGG | - | chr5_3:4997964-4997983 | Msa0793050:intron | 15.0% |
| !!! | GGTTATTATATTTTAACAAT+AGG | - | chr5_3:4998204-4998223 | Msa0793050:intron | 15.0% |
| !!! | TTATATTTTAACAATAGGAT+TGG | - | chr5_3:4998209-4998228 | Msa0793050:intron | 15.0% |
| !! | ATATGTTATTATTGACAAAA+AGG | + | chr5_3:4998566-4998585 | None:intergenic | 15.0% |
| !!! | TTTTGTCAATAATAACATAT+TGG | - | chr5_3:4998566-4998585 | Msa0793050:CDS | 15.0% |
| !!! | TGCTAATTAACTTTTAAATT+TGG | - | chr5_3:4999633-4999652 | Msa0793050:intron | 15.0% |
| !!! | TTTAAGATTTTTGATAAACA+AGG | - | chr5_3:5000019-5000038 | Msa0793050:intron | 15.0% |
| !!! | GTTTTGAATTTTCTTTAGAT+TGG | - | chr5_3:4996871-4996890 | Msa0793050:three_prime_UTR | 20.0% |
| !!! | TTTTTATTTTACTTTTGCCA+CGG | + | chr5_3:4997351-4997370 | None:intergenic | 20.0% |
| !! | AAATAAAAACATTATGATGG+GGG | - | chr5_3:4997362-4997381 | Msa0793050:intron | 20.0% |
| !! | AAAAATGAAATGCTAAAAGT+AGG | - | chr5_3:4997777-4997796 | Msa0793050:intron | 20.0% |
| !! | TATTATATTTGTAGAAACCA+TGG | + | chr5_3:4998421-4998440 | None:intergenic | 20.0% |
| !!! | TTCAATGTTGTAATTTTTGT+TGG | - | chr5_3:4998621-4998640 | Msa0793050:CDS | 20.0% |
| !!! | TCAATGTTGTAATTTTTGTT+GGG | - | chr5_3:4998622-4998641 | Msa0793050:CDS | 20.0% |
| !! | ACTAAAAGTTTCATTTATCT+GGG | + | chr5_3:4999135-4999154 | None:intergenic | 20.0% |
| !! | TACATATAAAAGTCAAATTC+AGG | - | chr5_3:4999310-4999329 | Msa0793050:intron | 20.0% |
| !! | AACAGAATATACAAAATAAC+TGG | + | chr5_3:4999352-4999371 | None:intergenic | 20.0% |
| !! | TATATTCTGTTCTTAAGAAT+GGG | - | chr5_3:4999361-4999380 | Msa0793050:intron | 20.0% |
| !! | TATATATAAGGAAATTCCTT+AGG | + | chr5_3:4999427-4999446 | None:intergenic | 20.0% |
| !! | AAGAAACAAATAAAAAGTGA+AGG | + | chr5_3:4999488-4999507 | None:intergenic | 20.0% |
| !!! | CACTTTTTATTTGTTTCTTA+CGG | - | chr5_3:4999489-4999508 | Msa0793050:intron | 20.0% |
| !! | TTAAAAGTTAATTAGCATGT+GGG | + | chr5_3:4999630-4999649 | None:intergenic | 20.0% |
| !! | TTTAAAAGTTAATTAGCATG+TGG | + | chr5_3:4999631-4999650 | None:intergenic | 20.0% |
| !! | AGTATATTGAATGTAATGAA+TGG | - | chr5_3:5000328-5000347 | Msa0793050:intron | 20.0% |
| !!! | AAGAGAATATATGTAGTTTT+TGG | + | chr5_3:5000393-5000412 | None:intergenic | 20.0% |
| !! | ATTATCAGAAAGAAAATGTA+TGG | + | chr5_3:5000437-5000456 | None:intergenic | 20.0% |
| !! | TTAAAGTAAAACAAACACTA+TGG | - | chr5_3:5000518-5000537 | Msa0793050:intron | 20.0% |
| !! | TAGTATAAAGAGTAAGAATA+CGG | + | chr5_3:5000740-5000759 | None:intergenic | 20.0% |
| !! | ATACTATTGCTTATATTCAA+CGG | - | chr5_3:5000754-5000773 | Msa0793050:intron | 20.0% |
| !! | ACCAATACAAAAAAGATTAA+TGG | - | chr5_3:5000839-5000858 | Msa0793050:five_prime_UTR | 20.0% |
| !!! | TCCATTAATCTTTTTTGTAT+TGG | + | chr5_3:5000843-5000862 | None:intergenic | 20.0% |
| !!! | AAGTTTTAATTAAGTGCTTG+TGG | + | chr5_3:4997539-4997558 | None:intergenic | 25.0% |
| !!! | GGTCATTTGATTTTAACAAT+TGG | - | chr5_3:4998267-4998286 | Msa0793050:intron | 25.0% |
| !! | TCACACTATTCTATGATTTT+GGG | + | chr5_3:4998376-4998395 | None:intergenic | 25.0% |
| !! | ATCACACTATTCTATGATTT+TGG | + | chr5_3:4998377-4998396 | None:intergenic | 25.0% |
| !! | AAATGTAACTTGTAAGTCTA+TGG | - | chr5_3:4998442-4998461 | Msa0793050:CDS | 25.0% |
| !! | AATGTAACTTGTAAGTCTAT+GGG | - | chr5_3:4998443-4998462 | Msa0793050:CDS | 25.0% |
| ! | ATTGACAAAAAGGATTGAAT+TGG | + | chr5_3:4998556-4998575 | None:intergenic | 25.0% |
| ! | TAACATATTGGAACAATATG+AGG | - | chr5_3:4998578-4998597 | Msa0793050:CDS | 25.0% |
| ! | AAAGTCACAGTAAATATAGA+TGG | + | chr5_3:4998661-4998680 | None:intergenic | 25.0% |
| ! | TAAAGATTATATCACAGAAC+TGG | + | chr5_3:4998881-4998900 | None:intergenic | 25.0% |
| ! | ATTATCTATGCATCGAAAAA+GGG | + | chr5_3:4998991-4999010 | None:intergenic | 25.0% |
| ! | TATTATCTATGCATCGAAAA+AGG | + | chr5_3:4998992-4999011 | None:intergenic | 25.0% |
| ! | GACTAAAAGTTTCATTTATC+TGG | + | chr5_3:4999136-4999155 | None:intergenic | 25.0% |
| !! | TAGTCAAAATTTTCAACAGA+TGG | - | chr5_3:4999151-4999170 | Msa0793050:CDS | 25.0% |
| ! | ATATAAAAGTCAAATTCAGG+TGG | - | chr5_3:4999313-4999332 | Msa0793050:intron | 25.0% |
| ! | TATAAAAGTCAAATTCAGGT+GGG | - | chr5_3:4999314-4999333 | Msa0793050:intron | 25.0% |
| ! | GTATATTCTGTTCTTAAGAA+TGG | - | chr5_3:4999360-4999379 | Msa0793050:intron | 25.0% |
| !!! | CTTTGCTTTTATTAGGATTT+TGG | + | chr5_3:4999400-4999419 | None:intergenic | 25.0% |
| ! | CAAAATCCTAATAAAAGCAA+AGG | - | chr5_3:4999398-4999417 | Msa0793050:intron | 25.0% |
| ! | AAACAAATAAAAAGTGAAGG+TGG | + | chr5_3:4999485-4999504 | None:intergenic | 25.0% |
| !!! | ACTTTTAAATTTGGTTTTCC+AGG | - | chr5_3:4999642-4999661 | Msa0793050:intron | 25.0% |
| !!! | TTCATTGACTCTTTTTTATC+AGG | - | chr5_3:4999811-4999830 | Msa0793050:intron | 25.0% |
| ! | AACATCTTCCTTTCATTTAT+TGG | + | chr5_3:4999844-4999863 | None:intergenic | 25.0% |
| ! | ACAAGGCTATTTATATAAAC+TGG | - | chr5_3:5000036-5000055 | Msa0793050:intron | 25.0% |
| ! | AAATACTAGCAATATATGTG+AGG | - | chr5_3:5000118-5000137 | Msa0793050:intron | 25.0% |
| ! | TGTTTGTCATTAGGAAATTA+AGG | - | chr5_3:5000159-5000178 | Msa0793050:intron | 25.0% |
| !! | ACTTTAGAAACAATCAAATG+TGG | + | chr5_3:5000228-5000247 | None:intergenic | 25.0% |
| ! | TTTTCTTTAGATTGGAGAAG+CGG | - | chr5_3:4996879-4996898 | Msa0793050:three_prime_UTR | 30.0% |
| AAGAAATTCTTTCTCTAGGT+CGG | + | chr5_3:4997115-4997134 | None:intergenic | 30.0% | |
| ATGACTTTGAACTTGATATG+TGG | - | chr5_3:4997253-4997272 | Msa0793050:CDS | 30.0% | |
| CTATTATCAAAACACCTAAG+AGG | - | chr5_3:4997324-4997343 | Msa0793050:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr5_3:4997503-4997522 | Msa0793050:intron | 30.0% | |
| !!! | AACAATGGGCAAGTTTTTTT+TGG | - | chr5_3:4997749-4997768 | Msa0793050:intron | 30.0% |
| TGAAATGCTAAAAGTAGGAT+TGG | - | chr5_3:4997782-4997801 | Msa0793050:intron | 30.0% | |
| GTTGAACACCTAATACTAAT+AGG | - | chr5_3:4997809-4997828 | Msa0793050:intron | 30.0% | |
| !!! | AATTTTAACTCTAACCACGA+AGG | + | chr5_3:4997954-4997973 | None:intergenic | 30.0% |
| CATTGAAAACTATGATACCA+GGG | + | chr5_3:4998058-4998077 | None:intergenic | 30.0% | |
| ATATAGGATGGAGAAAAAGT+TGG | - | chr5_3:4998183-4998202 | Msa0793050:CDS | 30.0% | |
| ACATAACCTGAATACTACAA+TGG | - | chr5_3:4998782-4998801 | Msa0793050:intron | 30.0% | |
| !! | TCTTTAGAACTTGATGAAGA+TGG | - | chr5_3:4998895-4998914 | Msa0793050:intron | 30.0% |
| !! | CTTTAGAACTTGATGAAGAT+GGG | - | chr5_3:4998896-4998915 | Msa0793050:intron | 30.0% |
| !!! | AAACCTTTGTTTTTTCTGCA+GGG | - | chr5_3:4999077-4999096 | Msa0793050:intron | 30.0% |
| GATATGGACTTTGATCAATT+TGG | - | chr5_3:4999285-4999304 | Msa0793050:intron | 30.0% | |
| !! | AGGTATCCTTTGCTTTTATT+AGG | + | chr5_3:4999407-4999426 | None:intergenic | 30.0% |
| ATAAAAGCAAAGGATACCTA+AGG | - | chr5_3:4999408-4999427 | Msa0793050:intron | 30.0% | |
| ! | TTTTGTTCTATCAGAGAAAG+TGG | - | chr5_3:4999518-4999537 | Msa0793050:intron | 30.0% |
| TCTCATCAACAACTCTAAAT+GGG | + | chr5_3:4999723-4999742 | None:intergenic | 30.0% | |
| ATCTCATCAACAACTCTAAA+TGG | + | chr5_3:4999724-4999743 | None:intergenic | 30.0% | |
| !! | GTCTTTAGAGTAAATTCCTT+TGG | - | chr5_3:4999760-4999779 | Msa0793050:intron | 30.0% |
| !!! | TGACTCTTTTTTATCAGGAA+TGG | - | chr5_3:4999816-4999835 | Msa0793050:intron | 30.0% |
| GAATGGATCCAATAAATGAA+AGG | - | chr5_3:4999833-4999852 | Msa0793050:intron | 30.0% | |
| ATATTAATTAGCACTCACTG+TGG | + | chr5_3:4999904-4999923 | None:intergenic | 30.0% | |
| CTAATGACAAACAAAGCTAT+GGG | + | chr5_3:5000152-5000171 | None:intergenic | 30.0% | |
| ! | AAATTAAGGTTGATCTTTGC+AGG | - | chr5_3:5000173-5000192 | Msa0793050:intron | 30.0% |
| TATGAGAAATTACCCTTTGA+GGG | + | chr5_3:5000370-5000389 | None:intergenic | 30.0% | |
| TTTCTTTCTGATAATCAGTG+TGG | - | chr5_3:5000442-5000461 | Msa0793050:intron | 30.0% | |
| !! | TCGCATTTTGTATAGTTTTG+TGG | - | chr5_3:5000548-5000567 | Msa0793050:intron | 30.0% |
| !! | TGAACTTGCTTTTGATTCAT+GGG | - | chr5_3:5000598-5000617 | Msa0793050:intron | 30.0% |
| TCAATTCAACATCTTCGAAA+GGG | + | chr5_3:5000658-5000677 | None:intergenic | 30.0% | |
| ATCAATTCAACATCTTCGAA+AGG | + | chr5_3:5000659-5000678 | None:intergenic | 30.0% | |
| AAGATGTTGAATTGATCCAT+TGG | - | chr5_3:5000663-5000682 | Msa0793050:five_prime_UTR | 30.0% | |
| ! | TCCATTGGTTGTAAATAATG+CGG | - | chr5_3:5000678-5000697 | Msa0793050:five_prime_UTR | 30.0% |
| TTAGCTGCAAAACAAGAGTT+AGG | + | chr5_3:4997018-4997037 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCAGCTAAGAAAG+AGG | - | chr5_3:4997023-4997042 | Msa0793050:three_prime_UTR | 35.0% |
| ATTATGCTAAGTCAATTGCC+CGG | - | chr5_3:4997082-4997101 | Msa0793050:three_prime_UTR | 35.0% | |
| AGAAATTCTTTCTCTAGGTC+GGG | + | chr5_3:4997114-4997133 | None:intergenic | 35.0% | |
| CCTCAAGAAATTCTTTCTCT+AGG | + | chr5_3:4997119-4997138 | None:intergenic | 35.0% | |
| CCTAGAGAAAGAATTTCTTG+AGG | - | chr5_3:4997116-4997135 | Msa0793050:three_prime_UTR | 35.0% | |
| TAAGTGCTTGTGGTGATTTA+GGG | + | chr5_3:4997529-4997548 | None:intergenic | 35.0% | |
| TTAAGTGCTTGTGGTGATTT+AGG | + | chr5_3:4997530-4997549 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGTGTTCTTATGGA+TGG | + | chr5_3:4997568-4997587 | None:intergenic | 35.0% |
| !!! | GTTCTGTTTTGGTGTTCTTA+TGG | + | chr5_3:4997572-4997591 | None:intergenic | 35.0% |
| TTTAGTTGGGTAGGATTTGT+TGG | + | chr5_3:4997630-4997649 | None:intergenic | 35.0% | |
| AGAAGATGATAACCAGTGAA+GGG | - | chr5_3:4997712-4997731 | Msa0793050:intron | 35.0% | |
| GTGTCACACATAGAAACAAT+GGG | - | chr5_3:4997735-4997754 | Msa0793050:intron | 35.0% | |
| !!! | ATGGGCAAGTTTTTTTTGGT+TGG | - | chr5_3:4997753-4997772 | Msa0793050:intron | 35.0% |
| !!! | TGGGCAAGTTTTTTTTGGTT+GGG | - | chr5_3:4997754-4997773 | Msa0793050:intron | 35.0% |
| ACACCTAATACTAATAGGCA+AGG | - | chr5_3:4997814-4997833 | Msa0793050:intron | 35.0% | |
| CTAATACTAATAGGCAAGGA+CGG | - | chr5_3:4997818-4997837 | Msa0793050:intron | 35.0% | |
| ! | ATTTTATGTTGTGTCCTTCG+TGG | - | chr5_3:4997937-4997956 | Msa0793050:intron | 35.0% |
| !!! | TTCAACTTGTTGTTTTTCCC+TGG | - | chr5_3:4998038-4998057 | Msa0793050:CDS | 35.0% |
| GCATTGAAAACTATGATACC+AGG | + | chr5_3:4998059-4998078 | None:intergenic | 35.0% | |
| TCACATCACTCTGTTAATCA+TGG | - | chr5_3:4998126-4998145 | Msa0793050:intron | 35.0% | |
| ! | ACATTTTTCTCCATCCTATG+AGG | + | chr5_3:4998246-4998265 | None:intergenic | 35.0% |
| CATAGGATGGAGAAAAATGT+TGG | - | chr5_3:4998246-4998265 | Msa0793050:intron | 35.0% | |
| !! | GATTTTAACAATTGGATCGC+TGG | - | chr5_3:4998275-4998294 | Msa0793050:intron | 35.0% |
| AGATCACATTCCATATGGTT+GGG | - | chr5_3:4998338-4998357 | Msa0793050:intron | 35.0% | |
| TTAGATGCCTACTACAATTG+AGG | - | chr5_3:4998494-4998513 | Msa0793050:intron | 35.0% | |
| AAAACTTGATGCTGACAAGA+AGG | - | chr5_3:4998702-4998721 | Msa0793050:intron | 35.0% | |
| ACCTGAATACTACAATGGAT+TGG | - | chr5_3:4998787-4998806 | Msa0793050:intron | 35.0% | |
| ACCAATCCATTGTAGTATTC+AGG | + | chr5_3:4998791-4998810 | None:intergenic | 35.0% | |
| ! | AACTGGCAAGCATTTTTCAT+AGG | + | chr5_3:4998864-4998883 | None:intergenic | 35.0% |
| AAAACTCAGGACTTGAATAC+TGG | + | chr5_3:4998927-4998946 | None:intergenic | 35.0% | |
| TAGCTACATGCTAAAAACTC+AGG | + | chr5_3:4998940-4998959 | None:intergenic | 35.0% | |
| AGCATGTAGCTAAAGTAGTT+CGG | - | chr5_3:4998948-4998967 | Msa0793050:intron | 35.0% | |
| CAAAACCAGAAACACAAAAG+AGG | + | chr5_3:4999046-4999065 | None:intergenic | 35.0% | |
| !!! | CTCTTTTGTGTTTCTGGTTT+TGG | - | chr5_3:4999044-4999063 | Msa0793050:CDS | 35.0% |
| !!! | CAAACCTTTGTTTTTTCTGC+AGG | - | chr5_3:4999076-4999095 | Msa0793050:intron | 35.0% |
| TTTCCCTGCAGAAAAAACAA+AGG | + | chr5_3:4999083-4999102 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTCTGCAGGGAAAA+TGG | - | chr5_3:4999084-4999103 | Msa0793050:intron | 35.0% |
| TCTTAAGAATGGGATTTCAC+AGG | - | chr5_3:4999371-4999390 | Msa0793050:intron | 35.0% | |
| CTTAAGAATGGGATTTCACA+GGG | - | chr5_3:4999372-4999391 | Msa0793050:intron | 35.0% | |
| AAAAGTGAAGGTGGAGTATA+CGG | + | chr5_3:4999476-4999495 | None:intergenic | 35.0% | |
| AGTTAATTAGCATGTGGGAT+GGG | + | chr5_3:4999625-4999644 | None:intergenic | 35.0% | |
| AAGTTAATTAGCATGTGGGA+TGG | + | chr5_3:4999626-4999645 | None:intergenic | 35.0% | |
| ! | GTTGTTGATGAGATCAATCA+AGG | - | chr5_3:4999730-4999749 | Msa0793050:intron | 35.0% |
| !! | AGTTTTTGACTCGCTGAATT+AGG | + | chr5_3:4999987-5000006 | None:intergenic | 35.0% |
| GGCTATTTATATAAACTGGC+CGG | - | chr5_3:5000040-5000059 | Msa0793050:intron | 35.0% | |
| CCTAATGACAAACAAAGCTA+TGG | + | chr5_3:5000153-5000172 | None:intergenic | 35.0% | |
| !! | CCATAGCTTTGTTTGTCATT+AGG | - | chr5_3:5000150-5000169 | Msa0793050:intron | 35.0% |
| AAACACCTGCACAAGATTAA+TGG | + | chr5_3:5000259-5000278 | None:intergenic | 35.0% | |
| GTATGAGAAATTACCCTTTG+AGG | + | chr5_3:5000371-5000390 | None:intergenic | 35.0% | |
| AGTATTATCACTGGACATGT+TGG | - | chr5_3:5000483-5000502 | Msa0793050:intron | 35.0% | |
| !! | GTGAACTTGCTTTTGATTCA+TGG | - | chr5_3:5000597-5000616 | Msa0793050:intron | 35.0% |
| ACCGCATTATTTACAACCAA+TGG | + | chr5_3:5000682-5000701 | None:intergenic | 35.0% | |
| GTTGTAAATAATGCGGTAGA+GGG | - | chr5_3:5000685-5000704 | Msa0793050:five_prime_UTR | 35.0% | |
| !! | ATTTTCATGCTGCTTCAGAC+TGG | + | chr5_3:4996908-4996927 | None:intergenic | 40.0% |
| ! | GCATGAAAATTTTGCTCTGC+AGG | - | chr5_3:4996918-4996937 | Msa0793050:three_prime_UTR | 40.0% |
| AGAACGTAGACAGAAGCTTA+CGG | - | chr5_3:4997050-4997069 | Msa0793050:three_prime_UTR | 40.0% | |
| AATCACCAATCTCGTCTAGA+AGG | - | chr5_3:4997193-4997212 | Msa0793050:three_prime_UTR | 40.0% | |
| AGAACACCAAAACAGAACTG+AGG | - | chr5_3:4997574-4997593 | Msa0793050:intron | 40.0% | |
| GAACACCAAAACAGAACTGA+GGG | - | chr5_3:4997575-4997594 | Msa0793050:intron | 40.0% | |
| !! | TTGGGTAGGATTTGTTGGTT+TGG | + | chr5_3:4997625-4997644 | None:intergenic | 40.0% |
| !!! | TTGCTAGGTTTTAGTTGGGT+AGG | + | chr5_3:4997639-4997658 | None:intergenic | 40.0% |
| !!! | GGGTTTGCTAGGTTTTAGTT+GGG | + | chr5_3:4997643-4997662 | None:intergenic | 40.0% |
| GAGAAGATGATAACCAGTGA+AGG | - | chr5_3:4997711-4997730 | Msa0793050:intron | 40.0% | |
| GAAGATGATAACCAGTGAAG+GGG | - | chr5_3:4997713-4997732 | Msa0793050:intron | 40.0% | |
| ! | GGTGTCACACATAGAAACAA+TGG | - | chr5_3:4997734-4997753 | Msa0793050:intron | 40.0% |
| CGTCCTTGCCTATTAGTATT+AGG | + | chr5_3:4997820-4997839 | None:intergenic | 40.0% | |
| GGAGCTAGGAATTACACTTA+GGG | - | chr5_3:4997839-4997858 | Msa0793050:intron | 40.0% | |
| GAGCTAGGAATTACACTTAG+GGG | - | chr5_3:4997840-4997859 | Msa0793050:intron | 40.0% | |
| AGCTAGGAATTACACTTAGG+GGG | - | chr5_3:4997841-4997860 | Msa0793050:intron | 40.0% | |
| ! | ATGCTGAAAAGCATGTTCTG+TGG | - | chr5_3:4998075-4998094 | Msa0793050:intron | 40.0% |
| TTTCTCCATCCTATATGCAG+AGG | + | chr5_3:4998179-4998198 | None:intergenic | 40.0% | |
| !! | TGGAAGTGTTAGAACCTCAT+AGG | - | chr5_3:4998229-4998248 | Msa0793050:intron | 40.0% |
| AGTGTTAGAACCTCATAGGA+TGG | - | chr5_3:4998233-4998252 | Msa0793050:intron | 40.0% | |
| CAACCATATGGAATGTGATC+TGG | + | chr5_3:4998339-4998358 | None:intergenic | 40.0% | |
| CAGATCACATTCCATATGGT+TGG | - | chr5_3:4998337-4998356 | Msa0793050:intron | 40.0% | |
| !! | TATGATTTTGGGAGCCCTAT+CGG | + | chr5_3:4998365-4998384 | None:intergenic | 40.0% |
| AAGATCGTGATTGTCTACCA+TGG | - | chr5_3:4998401-4998420 | Msa0793050:intron | 40.0% | |
| ! | ATGGGAGCTCTAACAACATT+TGG | - | chr5_3:4998461-4998480 | Msa0793050:intron | 40.0% |
| ! | TGGGAGCTCTAACAACATTT+GGG | - | chr5_3:4998462-4998481 | Msa0793050:intron | 40.0% |
| TCCAACTCCTCAATTGTAGT+AGG | + | chr5_3:4998504-4998523 | None:intergenic | 40.0% | |
| TGGCTTGAGAAGTTGTATCT+TGG | + | chr5_3:4998536-4998555 | None:intergenic | 40.0% | |
| CTGACAAGAAGGAATCTACA+AGG | - | chr5_3:4998713-4998732 | Msa0793050:intron | 40.0% | |
| GGCTGAACTGGATAACATTA+AGG | - | chr5_3:4998741-4998760 | Msa0793050:intron | 40.0% | |
| !! | AATGGATTGGTGAACCTATG+CGG | - | chr5_3:4998800-4998819 | Msa0793050:intron | 40.0% |
| ! | GGCAAGCATTTTTCATAGGA+TGG | + | chr5_3:4998860-4998879 | None:intergenic | 40.0% |
| TAGAACTTGATGAAGATGGG+AGG | - | chr5_3:4998899-4998918 | Msa0793050:intron | 40.0% | |
| ATCTATGCATCGAAAAAGGG+TGG | + | chr5_3:4998988-4999007 | None:intergenic | 40.0% | |
| CAAAAGAGGTCATGAAGATC+AGG | + | chr5_3:4999032-4999051 | None:intergenic | 40.0% | |
| ! | CATGACCTCTTTTGTGTTTC+TGG | - | chr5_3:4999038-4999057 | Msa0793050:CDS | 40.0% |
| TATCATGCTCATCTGAGAAG+TGG | + | chr5_3:4999269-4999288 | None:intergenic | 40.0% | |
| CTTCTCAGATGAGCATGATA+TGG | - | chr5_3:4999269-4999288 | Msa0793050:intron | 40.0% | |
| TTAATTAGCATGTGGGATGG+GGG | + | chr5_3:4999623-4999642 | None:intergenic | 40.0% | |
| GTTAATTAGCATGTGGGATG+GGG | + | chr5_3:4999624-4999643 | None:intergenic | 40.0% | |
| TAGTTGAAACTGATCGTTCC+TGG | + | chr5_3:4999663-4999682 | None:intergenic | 40.0% | |
| CAATCAAATGTGGCAGAACA+GGG | + | chr5_3:5000218-5000237 | None:intergenic | 40.0% | |
| ACAATCAAATGTGGCAGAAC+AGG | + | chr5_3:5000219-5000238 | None:intergenic | 40.0% | |
| AGTGACCATTAATCTTGTGC+AGG | - | chr5_3:5000251-5000270 | Msa0793050:intron | 40.0% | |
| CAGATCTGGTAACAACTTTG+GGG | + | chr5_3:5000290-5000309 | None:intergenic | 40.0% | |
| GCAGATCTGGTAACAACTTT+GGG | + | chr5_3:5000291-5000310 | None:intergenic | 40.0% | |
| TGCAGATCTGGTAACAACTT+TGG | + | chr5_3:5000292-5000311 | None:intergenic | 40.0% | |
| ACCAGATCTGCAATATAGTG+AGG | - | chr5_3:5000300-5000319 | Msa0793050:intron | 40.0% | |
| TGAATGTAATGAATGGCCCT+TGG | - | chr5_3:5000335-5000354 | Msa0793050:intron | 40.0% | |
| ! | GATCGATGGAGTATTATCAC+TGG | - | chr5_3:5000474-5000493 | Msa0793050:intron | 40.0% |
| TCATGGGAAATGCTAACAAG+TGG | - | chr5_3:5000614-5000633 | Msa0793050:intron | 40.0% | |
| !! | AAAGGGTTAAAGAGTGTCTG+GGG | + | chr5_3:5000641-5000660 | None:intergenic | 40.0% |
| !! | GAAAGGGTTAAAGAGTGTCT+GGG | + | chr5_3:5000642-5000661 | None:intergenic | 40.0% |
| GGTTGTAAATAATGCGGTAG+AGG | - | chr5_3:5000684-5000703 | Msa0793050:five_prime_UTR | 40.0% | |
| TCTTTAGATTGGAGAAGCGG+AGG | - | chr5_3:4996882-4996901 | Msa0793050:three_prime_UTR | 45.0% | |
| ! | CTTCTCCCTCAGTTCTGTTT+TGG | + | chr5_3:4997583-4997602 | None:intergenic | 45.0% |
| !!! | CGGGTTTGCTAGGTTTTAGT+TGG | + | chr5_3:4997644-4997663 | None:intergenic | 45.0% |
| AAACCTAGCAAACCCGATGA+AGG | - | chr5_3:4997648-4997667 | Msa0793050:intron | 45.0% | |
| !! | AAAGGTGCTCTTCCTTCATC+GGG | + | chr5_3:4997663-4997682 | None:intergenic | 45.0% |
| !! | CAAAGGTGCTCTTCCTTCAT+CGG | + | chr5_3:4997664-4997683 | None:intergenic | 45.0% |
| TCTCCATTGTTCCTCTTGTG+TGG | + | chr5_3:4997695-4997714 | None:intergenic | 45.0% | |
| CGGAGCTAGGAATTACACTT+AGG | - | chr5_3:4997838-4997857 | Msa0793050:intron | 45.0% | |
| GCTAGGAATTACACTTAGGG+GGG | - | chr5_3:4997842-4997861 | Msa0793050:intron | 45.0% | |
| CTGTTAATCATGGCCTCTGT+TGG | - | chr5_3:4998136-4998155 | Msa0793050:intron | 45.0% | |
| !! | ATCGCTGGTTAACCTGCTTT+TGG | - | chr5_3:4998290-4998309 | Msa0793050:intron | 45.0% |
| GATCACACTATGCCAAAAGC+AGG | + | chr5_3:4998305-4998324 | None:intergenic | 45.0% | |
| GCACCAGATCACATTCCATA+TGG | - | chr5_3:4998333-4998352 | Msa0793050:intron | 45.0% | |
| GCCTACTACAATTGAGGAGT+TGG | - | chr5_3:4998500-4998519 | Msa0793050:intron | 45.0% | |
| ! | GAAGGAATCTACAAGGTGTC+TGG | - | chr5_3:4998720-4998739 | Msa0793050:intron | 45.0% |
| AGTCAATCCATCAACCGCAT+AGG | + | chr5_3:4998817-4998836 | None:intergenic | 45.0% | |
| CCACGAGGTTTCTCAATGTA+GGG | + | chr5_3:4999112-4999131 | None:intergenic | 45.0% | |
| TTTCATTTATCTGGGCCACG+AGG | + | chr5_3:4999127-4999146 | None:intergenic | 45.0% | |
| TTTCAACAGATGGCTGTTGC+TGG | - | chr5_3:4999161-4999180 | Msa0793050:CDS | 45.0% | |
| GTTGCTGGAGAAGTTTCACT+AGG | - | chr5_3:4999176-4999195 | Msa0793050:CDS | 45.0% | |
| TCTGAGAAGTGGAGACACAT+TGG | + | chr5_3:4999258-4999277 | None:intergenic | 45.0% | |
| GAAGGTGGAGTATACGGTAT+GGG | + | chr5_3:4999470-4999489 | None:intergenic | 45.0% | |
| TGAAGGTGGAGTATACGGTA+TGG | + | chr5_3:4999471-4999490 | None:intergenic | 45.0% | |
| ! | TACCCCTCCAGATTGATGAT+GGG | + | chr5_3:4999564-4999583 | None:intergenic | 45.0% |
| ! | GATCTCTTAAGTGCTGTCTG+CGG | + | chr5_3:4999791-4999810 | None:intergenic | 45.0% |
| AGCACTCACTGTGGTGTATT+TGG | + | chr5_3:4999895-4999914 | None:intergenic | 45.0% | |
| GCCTCACTATATTGCAGATC+TGG | + | chr5_3:5000304-5000323 | None:intergenic | 45.0% | |
| TTGAGGGTTGCTCAATCCAA+GGG | + | chr5_3:5000354-5000373 | None:intergenic | 45.0% | |
| TTTGAGGGTTGCTCAATCCA+AGG | + | chr5_3:5000355-5000374 | None:intergenic | 45.0% | |
| TTGGATTGAGCAACCCTCAA+AGG | - | chr5_3:5000354-5000373 | Msa0793050:intron | 45.0% | |
| TGGATTGAGCAACCCTCAAA+GGG | - | chr5_3:5000355-5000374 | Msa0793050:intron | 45.0% | |
| AATACTCCATCGATCACCAG+CGG | + | chr5_3:5000469-5000488 | None:intergenic | 45.0% | |
| !! | CGAAAGGGTTAAAGAGTGTC+TGG | + | chr5_3:5000643-5000662 | None:intergenic | 45.0% |
| AAATAATGCGGTAGAGGGTG+TGG | - | chr5_3:5000690-5000709 | Msa0793050:five_prime_UTR | 45.0% | |
| GTAGACAAGCTTGACTGTCT+AGG | - | chr5_3:5000712-5000731 | Msa0793050:intron | 45.0% | |
| !!! | TAATTGAAATTAATTTTATT+TGG | - | chr5_3:4999211-4999230 | Msa0793050:CDS | 5.0% |
| AGCAGCCTTCTAGACGAGAT+TGG | + | chr5_3:4997201-4997220 | None:intergenic | 50.0% | |
| TCGTCTAGAAGGCTGCTTCT+AGG | - | chr5_3:4997204-4997223 | Msa0793050:three_prime_UTR | 50.0% | |
| CAAAACACCTAAGAGGACCG+TGG | - | chr5_3:4997331-4997350 | Msa0793050:intron | 50.0% | |
| ! | ACTTTTGCCACGGTCCTCTT+AGG | + | chr5_3:4997341-4997360 | None:intergenic | 50.0% |
| ! | GTGGTGATTTAGGGCCTGTT+TGG | + | chr5_3:4997520-4997539 | None:intergenic | 50.0% |
| ! | CTTCCTTCATCGGGTTTGCT+AGG | + | chr5_3:4997654-4997673 | None:intergenic | 50.0% |
| GCACCACACAAGAGGAACAA+TGG | - | chr5_3:4997689-4997708 | Msa0793050:intron | 50.0% | |
| TATGTGTGACACCCCTTCAC+TGG | + | chr5_3:4997727-4997746 | None:intergenic | 50.0% | |
| TAATAGGCAAGGACGGAGCT+AGG | - | chr5_3:4997825-4997844 | Msa0793050:intron | 50.0% | |
| CTCCATCCTATATGCAGAGG+CGG | + | chr5_3:4998176-4998195 | None:intergenic | 50.0% | |
| TCCATATGGTTGGGACCGAT+AGG | - | chr5_3:4998347-4998366 | Msa0793050:intron | 50.0% | |
| CCATATGGTTGGGACCGATA+GGG | - | chr5_3:4998348-4998367 | Msa0793050:intron | 50.0% | |
| ATATGAGGCTCGTCAGAGAC+AGG | - | chr5_3:4998593-4998612 | Msa0793050:CDS | 50.0% | |
| ! | TACAAGGTGTCTGGCTGAAC+TGG | - | chr5_3:4998729-4998748 | Msa0793050:intron | 50.0% |
| TGGTGAACCTATGCGGTTGA+TGG | - | chr5_3:4998807-4998826 | Msa0793050:intron | 50.0% | |
| !! | GCGGTTGATGGATTGACTAC+TGG | - | chr5_3:4998819-4998838 | Msa0793050:intron | 50.0% |
| CCCTACATTGAGAAACCTCG+TGG | - | chr5_3:4999109-4999128 | Msa0793050:intron | 50.0% | |
| GCCACGAGGTTTCTCAATGT+AGG | + | chr5_3:4999113-4999132 | None:intergenic | 50.0% | |
| TGGAGACACATTGGTGAGGA+TGG | + | chr5_3:4999249-4999268 | None:intergenic | 50.0% | |
| GAAGTGGAGACACATTGGTG+AGG | + | chr5_3:4999253-4999272 | None:intergenic | 50.0% | |
| GTACCCCTCCAGATTGATGA+TGG | + | chr5_3:4999565-4999584 | None:intergenic | 50.0% | |
| !! | AATCTGGAGGGGTACTACAG+AGG | - | chr5_3:4999570-4999589 | Msa0793050:intron | 50.0% |
| TCTTCCAGCTAACGTGACAC+CGG | + | chr5_3:5000062-5000081 | None:intergenic | 50.0% | |
| GAACAGGGCACATTAGTGAC+TGG | + | chr5_3:5000203-5000222 | None:intergenic | 50.0% | |
| TGATAATCAGTGTGGACCGC+TGG | - | chr5_3:5000450-5000469 | Msa0793050:intron | 50.0% | |
| TCTCTAGGTCGGGTGTAAGC+CGG | + | chr5_3:4997104-4997123 | None:intergenic | 55.0% | |
| !! | CTTGTGTGGTGCTGCAGCAA+AGG | + | chr5_3:4997681-4997700 | None:intergenic | 55.0% |
| TTGCTGCAGCACCACACAAG+AGG | - | chr5_3:4997681-4997700 | Msa0793050:intron | 55.0% | |
| ATGCAGAGGCGGAGCTAGAA+GGG | + | chr5_3:4998165-4998184 | None:intergenic | 55.0% | |
| TATGCAGAGGCGGAGCTAGA+AGG | + | chr5_3:4998166-4998185 | None:intergenic | 55.0% | |
| CTAGCTCCGCCTCTGCATAT+AGG | - | chr5_3:4998167-4998186 | Msa0793050:intron | 55.0% | |
| CTCCGCCTCTGCATATAGGA+TGG | - | chr5_3:4998171-4998190 | Msa0793050:intron | 55.0% | |
| CCCTATCGGTCCCAACCATA+TGG | + | chr5_3:4998351-4998370 | None:intergenic | 55.0% | |
| CTCAGCGCCCATCATCAATC+TGG | - | chr5_3:4999554-4999573 | Msa0793050:intron | 55.0% | |
| AGCGCCCATCATCAATCTGG+AGG | - | chr5_3:4999557-4999576 | Msa0793050:intron | 55.0% | |
| GCGCCCATCATCAATCTGGA+GGG | - | chr5_3:4999558-4999577 | Msa0793050:intron | 55.0% | |
| CGCCCATCATCAATCTGGAG+GGG | - | chr5_3:4999559-4999578 | Msa0793050:intron | 55.0% | |
| GCTGTCTGCGGCTAAACCAA+AGG | + | chr5_3:4999779-4999798 | None:intergenic | 55.0% | |
| CTCTAGGTCGGGTGTAAGCC+GGG | + | chr5_3:4997103-4997122 | None:intergenic | 60.0% | |
| GCTAGAAGGGGGACCAACAG+AGG | + | chr5_3:4998152-4998171 | None:intergenic | 60.0% | |
| TGCAGAGGCGGAGCTAGAAG+GGG | + | chr5_3:4998164-4998183 | None:intergenic | 60.0% | |
| TAGCATGTGGGATGGGGGCA+AGG | + | chr5_3:4999618-4999637 | None:intergenic | 60.0% | |
| TGTGGACCGCTGGTGATCGA+TGG | - | chr5_3:5000460-5000479 | Msa0793050:intron | 60.0% | |
| GCAGAGGCGGAGCTAGAAGG+GGG | + | chr5_3:4998163-4998182 | None:intergenic | 65.0% | |
| !! | CTGGCCGGTGTCACGTTAGC+TGG | - | chr5_3:5000055-5000074 | Msa0793050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 4996861 | 5000892 | 4996861 | ID=Msa0793050;Name=Msa0793050 |
| chr5_3 | mRNA | 4996861 | 5000892 | 4996861 | ID=Msa0793050-mRNA-1;Parent=Msa0793050;Name=Msa0793050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=205|1|1|1|1|1|11|371|241 |
| chr5_3 | exon | 4996861 | 4997293 | 4996861 | ID=Msa0793050-mRNA-1:exon:1899;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4997377 | 4997480 | 4997377 | ID=Msa0793050-mRNA-1:exon:1898;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4997848 | 4997920 | 4997848 | ID=Msa0793050-mRNA-1:exon:1897;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4998002 | 4998089 | 4998002 | ID=Msa0793050-mRNA-1:exon:1896;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4998173 | 4998221 | 4998173 | ID=Msa0793050-mRNA-1:exon:1895;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4998422 | 4998476 | 4998422 | ID=Msa0793050-mRNA-1:exon:1894;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4998556 | 4998655 | 4998556 | ID=Msa0793050-mRNA-1:exon:1893;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4998991 | 4999068 | 4998991 | ID=Msa0793050-mRNA-1:exon:1892;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 4999139 | 4999255 | 4999139 | ID=Msa0793050-mRNA-1:exon:1891;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 5000616 | 5000719 | 5000616 | ID=Msa0793050-mRNA-1:exon:1890;Parent=Msa0793050-mRNA-1 |
| chr5_3 | exon | 5000792 | 5000892 | 5000792 | ID=Msa0793050-mRNA-1:exon:1889;Parent=Msa0793050-mRNA-1 |
| chr5_3 | five_prime_UTR | 5000792 | 5000892 | 5000792 | ID=Msa0793050-mRNA-1:five_prime_utr;Parent=Msa0793050-mRNA-1 |
| chr5_3 | five_prime_UTR | 5000616 | 5000719 | 5000616 | ID=Msa0793050-mRNA-1:five_prime_utr;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4999139 | 4999255 | 4999139 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4998991 | 4999068 | 4998991 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4998556 | 4998655 | 4998556 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4998422 | 4998476 | 4998422 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4998173 | 4998221 | 4998173 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4998002 | 4998089 | 4998002 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4997848 | 4997920 | 4997848 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4997377 | 4997480 | 4997377 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | CDS | 4997232 | 4997293 | 4997232 | ID=Msa0793050-mRNA-1:cds;Parent=Msa0793050-mRNA-1 |
| chr5_3 | three_prime_UTR | 4996861 | 4997231 | 4996861 | ID=Msa0793050-mRNA-1:three_prime_utr;Parent=Msa0793050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
