Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793900 | RDY10647.1 | 68.498 | 273 | 54 | 1 | 332 | 572 | 5 | 277 | 2.76e-122 | 387 |
| Msa0793900 | RDY10647.1 | 74.430 | 614 | 101 | 7 | 12 | 572 | 9 | 619 | 0.0 | 907 |
| Msa0793900 | RDY10647.1 | 79.009 | 343 | 53 | 5 | 8 | 331 | 364 | 706 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793900 | sp|B9FSC8|OPR11_ORYSJ | 66.573 | 356 | 85 | 4 | 10 | 331 | 1 | 356 | 1.27e-165 | 478 |
| Msa0793900 | sp|B9FSC8|OPR11_ORYSJ | 65.152 | 264 | 62 | 1 | 339 | 572 | 6 | 269 | 7.39e-124 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793900 | A0A371I6H0 | 68.498 | 273 | 54 | 1 | 332 | 572 | 5 | 277 | 1.32e-122 | 387 |
| Msa0793900 | A0A371I6H0 | 74.430 | 614 | 101 | 7 | 12 | 572 | 9 | 619 | 0.0 | 907 |
| Msa0793900 | A0A371I6H0 | 79.009 | 343 | 53 | 5 | 8 | 331 | 364 | 706 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108930 | Msa0793900 | 0.831068 | 2.057777e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793900 | MtrunA17_Chr5g0394771 | 87.324 | 355 | 17 | 3 | 4 | 330 | 28 | 382 | 0.0 | 622 |
| Msa0793900 | MtrunA17_Chr5g0394771 | 71.429 | 266 | 52 | 1 | 331 | 572 | 31 | 296 | 5.06e-132 | 390 |
| Msa0793900 | MtrunA17_Chr5g0394751 | 81.322 | 348 | 37 | 3 | 12 | 331 | 4 | 351 | 0.0 | 571 |
| Msa0793900 | MtrunA17_Chr5g0394751 | 75.191 | 262 | 41 | 1 | 335 | 572 | 3 | 264 | 1.33e-138 | 406 |
| Msa0793900 | MtrunA17_Chr5g0394861 | 77.410 | 363 | 46 | 6 | 5 | 331 | 1 | 363 | 0.0 | 540 |
| Msa0793900 | MtrunA17_Chr5g0394861 | 75.556 | 270 | 34 | 2 | 335 | 572 | 7 | 276 | 3.74e-143 | 418 |
| Msa0793900 | MtrunA17_Chr5g0394891 | 77.008 | 361 | 49 | 5 | 5 | 331 | 1 | 361 | 0.0 | 539 |
| Msa0793900 | MtrunA17_Chr5g0394891 | 75.746 | 268 | 35 | 1 | 335 | 572 | 7 | 274 | 2.19e-144 | 421 |
| Msa0793900 | MtrunA17_Chr5g0394841 | 74.105 | 363 | 58 | 6 | 5 | 331 | 1 | 363 | 0.0 | 520 |
| Msa0793900 | MtrunA17_Chr5g0394841 | 71.852 | 270 | 44 | 2 | 335 | 572 | 7 | 276 | 2.07e-137 | 404 |
| Msa0793900 | MtrunA17_Chr5g0394811 | 72.394 | 355 | 64 | 4 | 11 | 331 | 116 | 470 | 2.27e-180 | 517 |
| Msa0793900 | MtrunA17_Chr5g0394811 | 83.271 | 269 | 15 | 1 | 334 | 572 | 115 | 383 | 2.95e-158 | 461 |
| Msa0793900 | MtrunA17_Chr5g0394811 | 93.976 | 83 | 5 | 0 | 22 | 104 | 1 | 83 | 1.09e-45 | 167 |
| Msa0793900 | MtrunA17_Chr5g0394811 | 59.559 | 136 | 26 | 1 | 346 | 481 | 1 | 107 | 1.42e-39 | 150 |
| Msa0793900 | MtrunA17_Chr5g0395841 | 69.972 | 363 | 75 | 6 | 3 | 331 | 1 | 363 | 1.45e-176 | 503 |
| Msa0793900 | MtrunA17_Chr5g0395841 | 69.343 | 274 | 54 | 1 | 329 | 572 | 3 | 276 | 1.25e-134 | 396 |
| Msa0793900 | MtrunA17_Chr3g0144001 | 64.368 | 348 | 94 | 4 | 14 | 331 | 8 | 355 | 2.50e-153 | 444 |
| Msa0793900 | MtrunA17_Chr3g0144001 | 61.303 | 261 | 75 | 1 | 338 | 572 | 8 | 268 | 8.22e-114 | 343 |
| Msa0793900 | MtrunA17_Chr4g0070561 | 47.439 | 371 | 148 | 5 | 8 | 331 | 11 | 381 | 1.03e-110 | 336 |
| Msa0793900 | MtrunA17_Chr4g0070561 | 46.494 | 271 | 107 | 4 | 340 | 572 | 19 | 289 | 8.86e-75 | 243 |
| Msa0793900 | MtrunA17_Chr5g0394791 | 64.021 | 189 | 44 | 1 | 334 | 498 | 5 | 193 | 5.61e-77 | 242 |
| Msa0793900 | MtrunA17_Chr5g0394791 | 73.333 | 165 | 28 | 2 | 10 | 158 | 5 | 169 | 9.68e-77 | 241 |
| Msa0793900 | MtrunA17_Chr5g0394801 | 57.277 | 213 | 62 | 3 | 149 | 353 | 18 | 209 | 2.97e-69 | 223 |
| Msa0793900 | MtrunA17_Chr5g0394801 | 78.571 | 98 | 21 | 0 | 465 | 562 | 18 | 115 | 1.28e-46 | 164 |
| Msa0793900 | MtrunA17_Chr3g0130471 | 83.721 | 43 | 7 | 0 | 176 | 218 | 1 | 43 | 1.95e-17 | 78.2 |
| Msa0793900 | MtrunA17_Chr3g0130471 | 61.818 | 55 | 18 | 1 | 492 | 546 | 1 | 52 | 1.18e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793900 | AT1G76690.1 | 66.116 | 363 | 89 | 4 | 3 | 331 | 1 | 363 | 3.28e-165 | 475 |
| Msa0793900 | AT1G76690.1 | 66.423 | 274 | 62 | 1 | 329 | 572 | 3 | 276 | 2.96e-129 | 383 |
| Msa0793900 | AT1G76680.1 | 65.651 | 361 | 90 | 5 | 5 | 331 | 1 | 361 | 1.75e-162 | 468 |
| Msa0793900 | AT1G76680.1 | 66.667 | 264 | 58 | 1 | 338 | 571 | 10 | 273 | 1.49e-121 | 363 |
| Msa0793900 | AT1G76680.2 | 61.399 | 386 | 90 | 6 | 5 | 331 | 1 | 386 | 9.73e-157 | 454 |
| Msa0793900 | AT1G76680.2 | 60.900 | 289 | 58 | 2 | 338 | 571 | 10 | 298 | 1.01e-115 | 349 |
| Msa0793900 | AT1G09400.1 | 63.889 | 324 | 89 | 3 | 22 | 317 | 1 | 324 | 3.76e-145 | 422 |
| Msa0793900 | AT1G09400.1 | 59.363 | 251 | 78 | 2 | 346 | 572 | 1 | 251 | 9.50e-108 | 326 |
| Msa0793900 | AT1G17990.1 | 66.008 | 253 | 69 | 3 | 14 | 249 | 7 | 259 | 7.39e-115 | 342 |
| Msa0793900 | AT1G17990.1 | 60.700 | 257 | 76 | 2 | 333 | 564 | 2 | 258 | 5.95e-111 | 332 |
| Msa0793900 | AT1G18020.1 | 66.008 | 253 | 69 | 3 | 14 | 249 | 7 | 259 | 7.39e-115 | 342 |
| Msa0793900 | AT1G18020.1 | 60.700 | 257 | 76 | 2 | 333 | 564 | 2 | 258 | 5.95e-111 | 332 |
| Msa0793900 | AT1G09400.2 | 64.394 | 264 | 66 | 3 | 82 | 317 | 2 | 265 | 1.14e-114 | 342 |
| Msa0793900 | AT1G09400.2 | 58.639 | 191 | 55 | 2 | 406 | 572 | 2 | 192 | 1.00e-75 | 241 |
| Msa0793900 | AT2G06050.2 | 45.669 | 381 | 153 | 6 | 16 | 345 | 12 | 389 | 1.21e-109 | 333 |
| Msa0793900 | AT2G06050.2 | 43.662 | 284 | 119 | 4 | 329 | 572 | 1 | 283 | 1.68e-72 | 237 |
| Msa0793900 | AT2G06050.1 | 45.669 | 381 | 153 | 6 | 16 | 345 | 12 | 389 | 1.21e-109 | 333 |
| Msa0793900 | AT2G06050.1 | 43.662 | 284 | 119 | 4 | 329 | 572 | 1 | 283 | 1.68e-72 | 237 |
| Msa0793900 | AT2G06050.3 | 45.669 | 381 | 153 | 6 | 16 | 345 | 12 | 389 | 1.21e-109 | 333 |
| Msa0793900 | AT2G06050.3 | 43.662 | 284 | 119 | 4 | 329 | 572 | 1 | 283 | 1.68e-72 | 237 |
| Msa0793900 | AT1G17990.2 | 62.846 | 253 | 69 | 4 | 14 | 249 | 7 | 251 | 3.97e-106 | 320 |
| Msa0793900 | AT1G17990.2 | 57.588 | 257 | 76 | 3 | 333 | 564 | 2 | 250 | 2.24e-102 | 310 |
Find 168 sgRNAs with CRISPR-Local
Find 574 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCTATAACTGAAAAT+AGG | 0.181027 | 5_3:+5717463 | Msa0793900:three_prime_UTR |
| GCAAATCTCTTTGGCAAATC+TGG | 0.196300 | 5_3:-5713180 | None:intergenic |
| CCAAGAATTGGGACTTTATA+TGG | 0.196652 | 5_3:+5717278 | Msa0793900:CDS |
| TTAAAGTCATTGACAATATT+AGG | 0.218480 | 5_3:-5716789 | None:intergenic |
| CTTGCATTTCAGAGTTGTTT+TGG | 0.223082 | 5_3:+5715577 | Msa0793900:intron |
| AGGGCAGACCTTGTTGTTTA+TGG | 0.231299 | 5_3:+5713138 | Msa0793900:CDS |
| TCAATGCTATAGCAGATAAT+AGG | 0.232603 | 5_3:+5713118 | Msa0793900:CDS |
| TATGAGAAAACCACCTTTAG+AGG | 0.233951 | 5_3:-5711502 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.235128 | 5_3:+5717556 | Msa0793900:three_prime_UTR |
| GCAAATCTCTTTGGTAAATC+TGG | 0.250222 | 5_3:-5717525 | None:intergenic |
| TACACTTCTGATCCAATTCT+TGG | 0.259451 | 5_3:+5717588 | Msa0793900:three_prime_UTR |
| TATTTAAATGGGTATCAAAA+TGG | 0.268737 | 5_3:+5711243 | None:intergenic |
| AAATCGTTGTAGATTTGTTT+TGG | 0.271540 | 5_3:+5717158 | Msa0793900:CDS |
| GGCTTCCTTAATCGGTGTTC+CGG | 0.273683 | 5_3:-5718952 | None:intergenic |
| TCATCAACAATTTCCATTCA+TGG | 0.277244 | 5_3:-5717348 | None:intergenic |
| CCATATAAAGTCCCAATTCT+TGG | 0.281748 | 5_3:-5717278 | None:intergenic |
| TCATCATTTCAGAGTTGTTT+TGG | 0.287756 | 5_3:+5711407 | Msa0793900:intron |
| CTCCTCTCAATAAATATAAC+AGG | 0.291526 | 5_3:+5713211 | Msa0793900:CDS |
| TATAAGAAGACCACCTTTAG+AGG | 0.292988 | 5_3:-5715672 | None:intergenic |
| TATGATCTCATTCTTGTTAG+TGG | 0.293944 | 5_3:-5711432 | None:intergenic |
| AGGGCAGATCTTATTGCTTA+TGG | 0.315216 | 5_3:+5717483 | Msa0793900:three_prime_UTR |
| ATCCAAACACACCAGGTATA+TGG | 0.318288 | 5_3:+5711562 | Msa0793900:CDS |
| ATATCCCGGAACACCGATTA+AGG | 0.320768 | 5_3:+5718947 | Msa0793900:three_prime_UTR |
| CCGATTAAGGAAGCCTTAAA+AGG | 0.323704 | 5_3:+5718960 | Msa0793900:three_prime_UTR |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5_3:+5717300 | Msa0793900:CDS |
| CATATAAAGTCCCAATTCTT+GGG | 0.338658 | 5_3:-5717277 | None:intergenic |
| GACTCACCTTGGATAATATA+TGG | 0.340462 | 5_3:-5717668 | None:intergenic |
| GTCCATATACCTGGTGTGTT+TGG | 0.341076 | 5_3:-5711564 | None:intergenic |
| ATCCAGACACACCAGGTATA+TGG | 0.345292 | 5_3:+5715732 | Msa0793900:CDS |
| AAAAGTAATTAACTGTTGTT+AGG | 0.346374 | 5_3:-5719131 | None:intergenic |
| GCATTAAGAGCAAATCTCTT+TGG | 0.352480 | 5_3:-5713189 | None:intergenic |
| CTCATTGGCACCAGACTGTA+AGG | 0.356523 | 5_3:-5713039 | None:intergenic |
| AAACTACTCACACCACAAAT+TGG | 0.358876 | 5_3:+5716705 | Msa0793900:CDS |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 5_3:+5712933 | Msa0793900:CDS |
| AGGCATTAATTGTTGCTTCC+AGG | 0.359229 | 5_3:+5719084 | Msa0793900:three_prime_UTR |
| TGGTATTCTTTATTGTCATA+TGG | 0.365038 | 5_3:+5717320 | Msa0793900:CDS |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366211 | 5_3:-5717534 | None:intergenic |
| AGACTCAAATCCCCAAGAAT+TGG | 0.370867 | 5_3:+5717266 | Msa0793900:CDS |
| GTCCATATACCTGGTGTGTC+TGG | 0.371956 | 5_3:-5715734 | None:intergenic |
| GCTTCCTTAATCGGTGTTCC+GGG | 0.373173 | 5_3:-5718951 | None:intergenic |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 5_3:-5712931 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.383924 | 5_3:-5717558 | None:intergenic |
| TTATCTTTCATGAATTGTTC+AGG | 0.388133 | 5_3:-5712751 | None:intergenic |
| TTGAATTTGCCCATCTTGTA+AGG | 0.388704 | 5_3:-5711304 | None:intergenic |
| TCATGAACCGCATCTACAAT+AGG | 0.389733 | 5_3:-5711612 | None:intergenic |
| CTCATGGATCATTCAAGAAA+AGG | 0.395876 | 5_3:-5717624 | None:intergenic |
| GAGATAGGAGCAGATAAAGT+TGG | 0.397834 | 5_3:+5712859 | Msa0793900:CDS |
| CAATGCTATAACTGAAAATA+GGG | 0.397983 | 5_3:+5717464 | Msa0793900:three_prime_UTR |
| GAATCGTTGTCGATTTCCTT+TGG | 0.398546 | 5_3:+5712813 | Msa0793900:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 5_3:-5715465 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.401093 | 5_3:+5712778 | Msa0793900:CDS |
| TCTTCTGTTCTTAGCCTCCT+TGG | 0.404793 | 5_3:-5716762 | None:intergenic |
| GATATTGGTGCTTGTCCATT+CGG | 0.411160 | 5_3:-5712402 | None:intergenic |
| CTTTCTGCATATTCTGCAAA+TGG | 0.412616 | 5_3:-5712895 | None:intergenic |
| CCATTGAAAACCTTTCTCAT+TGG | 0.416074 | 5_3:-5717399 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 5_3:-5715652 | None:intergenic |
| TCCTCTTAACAAGTATAATA+GGG | 0.422103 | 5_3:+5717557 | Msa0793900:three_prime_UTR |
| CTGAAATCATTGACAATATG+AGG | 0.422538 | 5_3:-5712501 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.422831 | 5_3:-5713054 | None:intergenic |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 5_3:+5715478 | Msa0793900:CDS |
| AAAGAATACCATATTTATTG+AGG | 0.434046 | 5_3:-5717308 | None:intergenic |
| GACTCAAATCCCCAAGAATT+GGG | 0.434228 | 5_3:+5717267 | Msa0793900:CDS |
| GTACCATCACCTCCAATTTG+TGG | 0.439210 | 5_3:-5716717 | None:intergenic |
| CAATGCTATAGCAGATAATA+GGG | 0.441084 | 5_3:+5713119 | Msa0793900:CDS |
| GAAGCAGTTGCGAATGAGAT+AGG | 0.444031 | 5_3:+5712844 | Msa0793900:CDS |
| TAAGGTGTAAGTAAAGGAAT+AGG | 0.446720 | 5_3:-5711286 | None:intergenic |
| TCTTATTACACCTTACAAGA+TGG | 0.451798 | 5_3:+5715455 | Msa0793900:CDS |
| TTTACTTACACCTTACAAGA+TGG | 0.452565 | 5_3:+5711294 | Msa0793900:CDS |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 5_3:+5712922 | Msa0793900:CDS |
| GACATTCTACATTTCTGATC+CGG | 0.456348 | 5_3:+5713236 | Msa0793900:CDS |
| ACAGGACACAGATCAATTGA+TGG | 0.459700 | 5_3:+5718898 | Msa0793900:intron |
| GCAAATTCAATCTAGCTCAT+AGG | 0.460762 | 5_3:+5711317 | Msa0793900:CDS |
| TAGTCGGTATAACCAAGAAT+TGG | 0.464873 | 5_3:-5717600 | None:intergenic |
| AACGACAGAACAGATGAATA+TGG | 0.465016 | 5_3:+5717123 | Msa0793900:CDS |
| TCATGGATCATTCAAGAAAA+GGG | 0.465755 | 5_3:-5717623 | None:intergenic |
| TTTCTCATAGCTGAAGCTAC+TGG | 0.465915 | 5_3:+5711516 | Msa0793900:CDS |
| TAGCTTGGCACCAATGAGAA+AGG | 0.476232 | 5_3:+5717389 | Msa0793900:three_prime_UTR |
| CTTCTTATAGCTGAAGCTAC+TGG | 0.479639 | 5_3:+5715686 | Msa0793900:CDS |
| TAAGGTGTAATAAGAGGAAT+GGG | 0.482782 | 5_3:-5715447 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 5_3:+5715605 | Msa0793900:CDS |
| GAGATAGGTGCAGAAAGAGT+TGG | 0.488228 | 5_3:+5717204 | Msa0793900:CDS |
| TAGAGGACAGCATGAGGTTG+AGG | 0.488275 | 5_3:-5715635 | None:intergenic |
| TCACGAAACCGAGACGACTA+AGG | 0.488520 | 5_3:+5712466 | Msa0793900:CDS |
| TCATCTGTCCTTAGTCGTCT+CGG | 0.489558 | 5_3:-5712474 | None:intergenic |
| AAGAATACCATATTTATTGA+GGG | 0.490058 | 5_3:-5717307 | None:intergenic |
| AACTGAATGTCATTATAGCT+TGG | 0.490545 | 5_3:+5717374 | Msa0793900:three_prime_UTR |
| GCATGAACAGCATCTACAAT+GGG | 0.496515 | 5_3:-5715782 | None:intergenic |
| CAGTCTGGTGCCAATGAGAA+AGG | 0.498444 | 5_3:+5713044 | Msa0793900:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5_3:+5712712 | Msa0793900:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5_3:+5717057 | Msa0793900:CDS |
| GTGGAACCAAGAATAAAATC+AGG | 0.503178 | 5_3:+5712997 | Msa0793900:CDS |
| GACTTGTCTGTAGAAGATAT+TGG | 0.505257 | 5_3:-5712417 | None:intergenic |
| GAATAATACTTGATAGCAAT+GGG | 0.505456 | 5_3:-5711471 | None:intergenic |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 5_3:+5712921 | Msa0793900:CDS |
| GTAAGGTGTAATAAGAGGAA+TGG | 0.511089 | 5_3:-5715448 | None:intergenic |
| CTGTCCTCTATTACTCTCAA+AGG | 0.511507 | 5_3:+5715648 | Msa0793900:CDS |
| GATTGAAAGCCCTTACAGTC+TGG | 0.513661 | 5_3:+5713029 | Msa0793900:CDS |
| GAAGCTATTGCAAATGAGAT+AGG | 0.513935 | 5_3:+5717189 | Msa0793900:CDS |
| TACTTGATAGCAATGGGTTG+AGG | 0.515275 | 5_3:-5711465 | None:intergenic |
| CTTATTACACCTTACAAGAT+GGG | 0.515387 | 5_3:+5715456 | Msa0793900:CDS |
| GGAGGCTATGACAGACAAGA+TGG | 0.516327 | 5_3:+5713093 | Msa0793900:intron |
| GCAAGAAATGCTATTGAAGC+TGG | 0.517901 | 5_3:+5712531 | Msa0793900:CDS |
| TTACTTACACCTTACAAGAT+GGG | 0.519268 | 5_3:+5711295 | Msa0793900:CDS |
| ATCTTGTAAGGTGTAATAAG+AGG | 0.519989 | 5_3:-5715453 | None:intergenic |
| AGAATAATACTTGATAGCAA+TGG | 0.520679 | 5_3:-5711472 | None:intergenic |
| TCTGTTCTTAGCCTCCTTGG+TGG | 0.522540 | 5_3:-5716759 | None:intergenic |
| AAGTGTTGTTCACTATAAAA+CGG | 0.523903 | 5_3:-5719233 | None:intergenic |
| TCATATGGTGGAGCCATGAA+TGG | 0.524839 | 5_3:+5717335 | Msa0793900:exon |
| CTCCTTGGTGGTGTGAATTG+TGG | 0.527123 | 5_3:-5716747 | None:intergenic |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 5_3:+5715659 | Msa0793900:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5_3:-5717092 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5_3:+5712721 | Msa0793900:CDS |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5_3:+5717066 | Msa0793900:CDS |
| TCCCTGTTATATTTATTGAG+AGG | 0.534017 | 5_3:-5713213 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5_3:+5716819 | Msa0793900:CDS |
| TATTCTCAGAGAACCTCTAA+AGG | 0.545106 | 5_3:+5711489 | Msa0793900:CDS |
| TATTCTTTATTGTCATATGG+TGG | 0.548414 | 5_3:+5717323 | Msa0793900:CDS |
| GATAATAGATAGTAATTGAT+CGG | 0.555558 | 5_3:-5719019 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.556652 | 5_3:-5715743 | None:intergenic |
| TCACCTTGGATGCTACCTCA+TGG | 0.560233 | 5_3:-5717640 | None:intergenic |
| GATCCATGAGGTAGCATCCA+AGG | 0.560598 | 5_3:+5717637 | Msa0793900:three_prime_UTR |
| ACACCACAAATTGGAGGTGA+TGG | 0.561195 | 5_3:+5716714 | Msa0793900:CDS |
| ATCTTGTAAGGTGTAAGTAA+AGG | 0.563877 | 5_3:-5711292 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.571441 | 5_3:+5713054 | Msa0793900:CDS |
| ATATAAAGTCCCAATTCTTG+GGG | 0.575625 | 5_3:-5717276 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 5_3:+5712975 | Msa0793900:CDS |
| CTACTCACACCACAAATTGG+AGG | 0.577932 | 5_3:+5716708 | Msa0793900:CDS |
| GGTCATGTTAAACAATATCC+CGG | 0.582783 | 5_3:+5718933 | Msa0793900:three_prime_UTR |
| AAACTTCCATATATTATCCA+AGG | 0.584912 | 5_3:+5717662 | Msa0793900:three_prime_UTR |
| CTAAAGAGCAAGTTGAGGCA+TGG | 0.586424 | 5_3:+5715756 | Msa0793900:CDS |
| GGCATGAACAGCATCTACAA+TGG | 0.589084 | 5_3:-5715783 | None:intergenic |
| TACATTTCTGATCCGGTGGT+AGG | 0.590489 | 5_3:+5713243 | Msa0793900:CDS |
| AATATATGGAAGTTTCACCT+TGG | 0.592715 | 5_3:-5717654 | None:intergenic |
| TAAATGGGTATCAAAATGGA+AGG | 0.592945 | 5_3:+5711247 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.594651 | 5_3:-5711573 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5_3:-5712729 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5_3:-5717074 | None:intergenic |
| TCTCAGAGAACCTCTAAAGG+TGG | 0.598789 | 5_3:+5711492 | Msa0793900:CDS |
| CAAGGCTATCCAGACACACC+AGG | 0.601781 | 5_3:+5715725 | Msa0793900:CDS |
| CTTTCATGAATTGTTCAGGT+AGG | 0.601902 | 5_3:-5712747 | None:intergenic |
| TCATTGGCACCAGACTGTAA+GGG | 0.602205 | 5_3:-5713038 | None:intergenic |
| AGGTTGAGGAACTTTGCCAT+AGG | 0.604983 | 5_3:-5715621 | None:intergenic |
| GGTGTCTCTGACACTGCTCA+AGG | 0.607719 | 5_3:+5711537 | Msa0793900:CDS |
| GGTGTCTCTGACACTGCTCA+AGG | 0.607719 | 5_3:+5715707 | Msa0793900:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.613321 | 5_3:-5712829 | None:intergenic |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 5_3:-5715602 | None:intergenic |
| ATTCTACATTTCTGATCCGG+TGG | 0.614919 | 5_3:+5713239 | Msa0793900:CDS |
| CAAGGCTATCCAAACACACC+AGG | 0.616594 | 5_3:+5711555 | Msa0793900:CDS |
| GAGGCTATGACAGACAAGAT+GGG | 0.618192 | 5_3:+5713094 | Msa0793900:CDS |
| TCATTCAAGAAAAGGGTAGT+CGG | 0.624730 | 5_3:-5717616 | None:intergenic |
| CTAAAGAGCATGTTGAGGCG+TGG | 0.628560 | 5_3:+5711586 | Msa0793900:CDS |
| CTAACAGTTTATCAACCGAA+TGG | 0.632307 | 5_3:+5712387 | Msa0793900:intron |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 5_3:+5715662 | Msa0793900:CDS |
| GTGGAAACCTATTGTAGATG+CGG | 0.642769 | 5_3:+5711605 | Msa0793900:CDS |
| GTAGATGCGGTTCATGACAA+AGG | 0.644665 | 5_3:+5711618 | Msa0793900:CDS |
| TCCTCTCAATAAATATAACA+GGG | 0.647614 | 5_3:+5713212 | Msa0793900:CDS |
| GAGTAATAGAGGACAGCATG+AGG | 0.651668 | 5_3:-5715641 | None:intergenic |
| GTAGATGCTGTTCATGCCAA+AGG | 0.654488 | 5_3:+5715788 | Msa0793900:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.658731 | 5_3:+5717126 | Msa0793900:CDS |
| GACAGAACAGATGAATATGG+CGG | 0.673922 | 5_3:+5712781 | Msa0793900:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.679299 | 5_3:+5715751 | Msa0793900:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 5_3:+5712978 | Msa0793900:CDS |
| ATGGACTAAAGAGCATGTTG+AGG | 0.685195 | 5_3:+5711581 | Msa0793900:CDS |
| TAGTCCGTATAACCTACCAC+CGG | 0.695454 | 5_3:-5713255 | None:intergenic |
| CACAATTCACACCACCAAGG+AGG | 0.702235 | 5_3:+5716748 | Msa0793900:CDS |
| TGCCACAATTCACACCACCA+AGG | 0.706911 | 5_3:+5716745 | Msa0793900:CDS |
| ACAAACGACCATAAACAACA+AGG | 0.713799 | 5_3:-5713146 | None:intergenic |
| GATGCGGTTCATGACAAAGG+CGG | 0.716742 | 5_3:+5711621 | Msa0793900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAAATAATTAATT+AGG | - | chr5_3:5718540-5718559 | None:intergenic | 0.0% |
| !!! | TTTAATTTAAATAATTAATT+AGG | + | chr5_3:5718540-5718559 | Msa0793900:intron | 0.0% |
| !!! | CTAAATTTTATTTTTATCAA+AGG | - | chr5_3:5711944-5711963 | None:intergenic | 10.0% |
| !! | TACAATAAAATAAAATGATT+TGG | + | chr5_3:5712282-5712301 | Msa0793900:intron | 10.0% |
| !! | ACAATAAAATAAAATGATTT+GGG | + | chr5_3:5712283-5712302 | Msa0793900:intron | 10.0% |
| !!! | TAATGCTATTTTTTTTAATA+GGG | + | chr5_3:5716107-5716126 | Msa0793900:intron | 10.0% |
| !! | AATTTAAATAATTAATTAGG+TGG | - | chr5_3:5718543-5718562 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATGTATTTTTAA+TGG | + | chr5_3:5718239-5718258 | Msa0793900:intron | 10.0% |
| !!! | TTTTTTCATGTATTTTTAAT+GGG | + | chr5_3:5718240-5718259 | Msa0793900:intron | 10.0% |
| !! | AGAAAATAAAAATAAAATGT+AGG | - | chr5_3:5718336-5718355 | None:intergenic | 10.0% |
| !! | AATTTAAATAATTAATTAGG+TGG | + | chr5_3:5718543-5718562 | Msa0793900:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718616-5718635 | Msa0793900:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718616-5718635 | Msa0793900:intron | 100.0% |
| !!! | GTATATTTTTCTATCAAATT+TGG | + | chr5_3:5711855-5711874 | Msa0793900:intron | 15.0% |
| !!! | ATTATTGATTATTACTATCT+CGG | + | chr5_3:5712318-5712337 | Msa0793900:intron | 15.0% |
| !! | ATTTAGTTGAAATTAAATGA+TGG | - | chr5_3:5713582-5713601 | None:intergenic | 15.0% |
| !!! | ATTTAATTTCAACTAAATCA+CGG | + | chr5_3:5713584-5713603 | Msa0793900:intron | 15.0% |
| !! | AAGTAGAAATTAAATACATT+AGG | + | chr5_3:5714361-5714380 | Msa0793900:intron | 15.0% |
| !! | TTTAAGAAATTCATAAACAT+GGG | + | chr5_3:5714875-5714894 | Msa0793900:intron | 15.0% |
| !!! | TCACATTAATTTGATTTAAT+TGG | + | chr5_3:5715393-5715412 | Msa0793900:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr5_3:5715506-5715525 | None:intergenic | 15.0% |
| !!! | TCTAGTATGTATTTAATTTT+AGG | + | chr5_3:5715857-5715876 | Msa0793900:intron | 15.0% |
| !!! | AAATGCTATTTTGTTTAATA+GGG | - | chr5_3:5715933-5715952 | None:intergenic | 15.0% |
| !!! | AAAATGCTATTTTGTTTAAT+AGG | - | chr5_3:5715934-5715953 | None:intergenic | 15.0% |
| !!! | ATTAAACAAAATAGCATTTT+TGG | + | chr5_3:5715934-5715953 | Msa0793900:intron | 15.0% |
| !!! | CTAATGCTATTTTTTTTAAT+AGG | + | chr5_3:5716106-5716125 | Msa0793900:intron | 15.0% |
| !!! | AATGCTATTTTTTTTAATAG+GGG | + | chr5_3:5716108-5716127 | Msa0793900:intron | 15.0% |
| !!! | ATTTTTCAAGTATTACTTTT+AGG | + | chr5_3:5716223-5716242 | Msa0793900:intron | 15.0% |
| !! | AAGAAAGTAATAAATAGTTA+AGG | - | chr5_3:5716398-5716417 | None:intergenic | 15.0% |
| !! | AAATGTAATTAATATTGTGT+GGG | - | chr5_3:5716499-5716518 | None:intergenic | 15.0% |
| !! | AAATTGAATCAATTGAATTA+TGG | - | chr5_3:5716869-5716888 | None:intergenic | 15.0% |
| !!! | TCTAGTTTAATTACTATAAT+AGG | + | chr5_3:5716996-5717015 | Msa0793900:intron | 15.0% |
| !! | GAGTCTATATTATATATTTA+AGG | + | chr5_3:5717686-5717705 | Msa0793900:intron | 15.0% |
| !! | AGAAAATAAAGATAAAATGT+AGG | + | chr5_3:5717964-5717983 | Msa0793900:intron | 15.0% |
| !! | AGAAAATAAAGATAAAATGT+AGG | + | chr5_3:5717964-5717983 | Msa0793900:intron | 15.0% |
| !! | AAAAAATCCAAAAAAATACA+TGG | + | chr5_3:5718105-5718124 | Msa0793900:intron | 15.0% |
| !! | AAAATTCCATTAAAAATACA+TGG | + | chr5_3:5718128-5718147 | Msa0793900:intron | 15.0% |
| !! | AAAATTCCATTAAAAATACA+TGG | - | chr5_3:5718128-5718147 | None:intergenic | 15.0% |
| !! | AGAAAATAAAGATAAAATGT+AGG | - | chr5_3:5717964-5717983 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTCTGCATTTTA+AGG | + | chr5_3:5718455-5718474 | Msa0793900:intron | 15.0% |
| !!! | AAAATTCTGAGTTTTAAAAT+AGG | + | chr5_3:5718641-5718660 | Msa0793900:intron | 15.0% |
| !!! | AAATTCTGAGTTTTAAAATA+GGG | + | chr5_3:5718642-5718661 | Msa0793900:intron | 15.0% |
| !!! | TTGATACTTATATATTTTAC+AGG | + | chr5_3:5718880-5718899 | Msa0793900:intron | 15.0% |
| !! | AAATAGAATAGAAAGTGAAA+TGG | - | chr5_3:5711356-5711375 | None:intergenic | 20.0% |
| !!! | GTATATTTTTCTGTCAAATT+TGG | + | chr5_3:5711643-5711662 | Msa0793900:intron | 20.0% |
| !! | TTTAGAAAAAATAACACACA+GGG | - | chr5_3:5712087-5712106 | None:intergenic | 20.0% |
| !!! | TAAAATAAAATGATTTGGGT+TGG | + | chr5_3:5712287-5712306 | Msa0793900:intron | 20.0% |
| !! | AAACAACTTATTAAATATGG+AGG | - | chr5_3:5713340-5713359 | None:intergenic | 20.0% |
| !! | GAGAAACAACTTATTAAATA+TGG | - | chr5_3:5713343-5713362 | None:intergenic | 20.0% |
| !! | AACAATTAGAATACTTTGTT+CGG | + | chr5_3:5714728-5714747 | Msa0793900:intron | 20.0% |
| !! | TAACCATTCTTACAAAATTA+GGG | - | chr5_3:5714786-5714805 | None:intergenic | 20.0% |
| !! | TTAAAAACTCCAAAATTTCA+TGG | - | chr5_3:5714829-5714848 | None:intergenic | 20.0% |
| !! | GTTTAAGAAATTCATAAACA+TGG | + | chr5_3:5714874-5714893 | Msa0793900:intron | 20.0% |
| !! | TTAAGAAATTCATAAACATG+GGG | + | chr5_3:5714876-5714895 | Msa0793900:intron | 20.0% |
| !!! | AAATAGATTTTTTTCGACTA+GGG | - | chr5_3:5714926-5714945 | None:intergenic | 20.0% |
| !!! | AAAATAGATTTTTTTCGACT+AGG | - | chr5_3:5714927-5714946 | None:intergenic | 20.0% |
| !! | TATGAAAAAATTCAACTCTT+AGG | + | chr5_3:5714994-5715013 | Msa0793900:intron | 20.0% |
| !! | AAGAAGAATTTCAAATTACA+AGG | + | chr5_3:5715057-5715076 | Msa0793900:intron | 20.0% |
| !! | TGATTTAATTGGTATCAAAA+TGG | + | chr5_3:5715404-5715423 | Msa0793900:intron | 20.0% |
| !!! | AATGCTATTTTGTTTAATAG+GGG | - | chr5_3:5715932-5715951 | None:intergenic | 20.0% |
| !!! | TTGCAATTTTTCTAAAGATA+AGG | + | chr5_3:5716014-5716033 | Msa0793900:intron | 20.0% |
| !!! | TGCAATTTTTCTAAAGATAA+GGG | + | chr5_3:5716015-5716034 | Msa0793900:intron | 20.0% |
| !!! | ATGCTATTTTTTTTAATAGG+GGG | + | chr5_3:5716109-5716128 | Msa0793900:intron | 20.0% |
| !! | TTGCTCATTTGATAAAATTA+AGG | - | chr5_3:5716183-5716202 | None:intergenic | 20.0% |
| !! | AAGTAACATTAATGTTTCAT+TGG | - | chr5_3:5716363-5716382 | None:intergenic | 20.0% |
| !! | CTTTCACATATCATTTATTA+AGG | + | chr5_3:5716440-5716459 | Msa0793900:intron | 20.0% |
| !! | GAAATGTAATTAATATTGTG+TGG | - | chr5_3:5716500-5716519 | None:intergenic | 20.0% |
| !! | TTAAAGTCATTGACAATATT+AGG | - | chr5_3:5716792-5716811 | None:intergenic | 20.0% |
| !! | AGAGATAAAAATTGTTACAA+AGG | + | chr5_3:5716916-5716935 | Msa0793900:intron | 20.0% |
| !!! | TTATCACCTTTTGAAAAATT+TGG | + | chr5_3:5717234-5717253 | Msa0793900:CDS | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5_3:5717310-5717329 | None:intergenic | 20.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5_3:5717311-5717330 | None:intergenic | 20.0% |
| !!! | AAATTCCGAGTTTTAAAATA+GGG | - | chr5_3:5718702-5718721 | None:intergenic | 20.0% |
| !!! | AAAATTCCGAGTTTTAAAAT+AGG | - | chr5_3:5718701-5718720 | None:intergenic | 20.0% |
| !! | ATTCCGAAAAACATTAAAAT+GGG | - | chr5_3:5717792-5717811 | None:intergenic | 20.0% |
| !! | AATTCCGAAAAACATTAAAA+TGG | - | chr5_3:5717793-5717812 | None:intergenic | 20.0% |
| !!! | GAATTTTCCATGTATTTTTT+TGG | - | chr5_3:5718115-5718134 | None:intergenic | 20.0% |
| !!! | TATTAGCCATGTATTTTTAA+TGG | - | chr5_3:5718137-5718156 | None:intergenic | 20.0% |
| !! | AAAAATACATGGCTAATATT+TGG | + | chr5_3:5718139-5718158 | Msa0793900:intron | 20.0% |
| !! | TATTTGGATGATCAATTATT+AGG | + | chr5_3:5718155-5718174 | Msa0793900:intron | 20.0% |
| !! | ATAATGCACTTGTAAATATT+TGG | - | chr5_3:5718217-5718236 | None:intergenic | 20.0% |
| !!! | GTTTTTCCATGTATTTTTAA+TGG | + | chr5_3:5718282-5718301 | Msa0793900:intron | 20.0% |
| !!! | GGAATTTTTTTTGTTTATTC+TGG | + | chr5_3:5718303-5718322 | Msa0793900:intron | 20.0% |
| !!! | AGTATTTTTTCTGCATTTTA+AGG | + | chr5_3:5718356-5718375 | Msa0793900:intron | 20.0% |
| !! | AATTCCGAAAAACATTAAAT+TGG | + | chr5_3:5718595-5718614 | Msa0793900:intron | 20.0% |
| !! | ATTCCGAAAAACATTAAATT+GGG | + | chr5_3:5718596-5718615 | Msa0793900:intron | 20.0% |
| !!! | AATTCTGAGTTTTAAAATAG+GGG | + | chr5_3:5718643-5718662 | Msa0793900:intron | 20.0% |
| !! | AATTCCGAAAAACATTAAAT+TGG | + | chr5_3:5718595-5718614 | Msa0793900:intron | 20.0% |
| !! | ATTCCGAAAAACATTAAATT+GGG | + | chr5_3:5718596-5718615 | Msa0793900:intron | 20.0% |
| !!! | AAATTCCGAGTTTTAAAATA+AGG | + | chr5_3:5718702-5718721 | Msa0793900:intron | 20.0% |
| !!! | AATTCCGAGTTTTAAAATAA+GGG | + | chr5_3:5718703-5718722 | Msa0793900:intron | 20.0% |
| !! | GATAATAGATAGTAATTGAT+CGG | - | chr5_3:5719022-5719041 | None:intergenic | 20.0% |
| !! | AAAAGTAATTAACTGTTGTT+AGG | - | chr5_3:5719134-5719153 | None:intergenic | 20.0% |
| !! | GAATAATACTTGATAGCAAT+GGG | - | chr5_3:5711474-5711493 | None:intergenic | 25.0% |
| !! | AGAATAATACTTGATAGCAA+TGG | - | chr5_3:5711475-5711494 | None:intergenic | 25.0% |
| !! | CTTTAGAAAAAATAACACAC+AGG | - | chr5_3:5712088-5712107 | None:intergenic | 25.0% |
| ! | TAGACATCAATCAAATTACT+TGG | + | chr5_3:5712246-5712265 | Msa0793900:intron | 25.0% |
| ! | AGACATCAATCAAATTACTT+GGG | + | chr5_3:5712247-5712266 | Msa0793900:intron | 25.0% |
| ! | GATAAACTGTTAGATTAACA+AGG | - | chr5_3:5712380-5712399 | None:intergenic | 25.0% |
| ! | TTATCTTTCATGAATTGTTC+AGG | - | chr5_3:5712754-5712773 | None:intergenic | 25.0% |
| ! | TCCTCTCAATAAATATAACA+GGG | + | chr5_3:5713212-5713231 | Msa0793900:CDS | 25.0% |
| !! | TGTTTTCTTCATTCAAGAAA+TGG | - | chr5_3:5713282-5713301 | None:intergenic | 25.0% |
| ! | CTCATATGGTATAAAATATC+AGG | - | chr5_3:5713485-5713504 | None:intergenic | 25.0% |
| !!! | AGGATTTTTAGAAAGTCTTA+TGG | + | chr5_3:5713935-5713954 | Msa0793900:intron | 25.0% |
| !!! | ATTTTTAGAAAGTCTTATGG+AGG | + | chr5_3:5713938-5713957 | Msa0793900:intron | 25.0% |
| ! | ATACAAAACAAGCATTATGA+TGG | - | chr5_3:5714222-5714241 | None:intergenic | 25.0% |
| ! | AAACCTTGTTAAAATCTCTT+TGG | + | chr5_3:5714497-5714516 | Msa0793900:intron | 25.0% |
| ! | GAAGTAAAACAATATGATTG+TGG | - | chr5_3:5714549-5714568 | None:intergenic | 25.0% |
| ! | ATTCTAATTGTTAGCATTCA+TGG | - | chr5_3:5714720-5714739 | None:intergenic | 25.0% |
| ! | CTAACCATTCTTACAAAATT+AGG | - | chr5_3:5714787-5714806 | None:intergenic | 25.0% |
| ! | TATGATGCAATACTATATGT+AGG | + | chr5_3:5715198-5715217 | Msa0793900:intron | 25.0% |
| !! | CATTTTGTCATGAATTTTTG+TGG | - | chr5_3:5715232-5715251 | None:intergenic | 25.0% |
| ! | AAATTCATGACAAAATGTGA+AGG | + | chr5_3:5715235-5715254 | Msa0793900:intron | 25.0% |
| ! | ATATGCAATTCAATTTGAGA+GGG | - | chr5_3:5715350-5715369 | None:intergenic | 25.0% |
| ! | AATATGCAATTCAATTTGAG+AGG | - | chr5_3:5715351-5715370 | None:intergenic | 25.0% |
| !!! | ATGCTATTTTGTTTAATAGG+GGG | - | chr5_3:5715931-5715950 | None:intergenic | 25.0% |
| !!! | GCAATTTTTCTAAAGATAAG+GGG | + | chr5_3:5716016-5716035 | Msa0793900:intron | 25.0% |
| ! | CATATTTCCTTTATGTTAGA+GGG | + | chr5_3:5716048-5716067 | Msa0793900:intron | 25.0% |
| !!! | TTTCAAGTATTACTTTTAGG+TGG | + | chr5_3:5716226-5716245 | Msa0793900:intron | 25.0% |
| ! | ACTTGTATTGTGAAAATTGT+AGG | + | chr5_3:5717033-5717052 | Msa0793900:intron | 25.0% |
| !!! | TGAAAATTGTAGGTTTTGAT+GGG | + | chr5_3:5717043-5717062 | Msa0793900:intron | 25.0% |
| !! | AAATCTACAACGATTTTCAA+GGG | - | chr5_3:5717154-5717173 | None:intergenic | 25.0% |
| !!! | AAATCGTTGTAGATTTGTTT+TGG | + | chr5_3:5717158-5717177 | Msa0793900:CDS | 25.0% |
| !!! | CAATCTCCAAATTTTTCAAA+AGG | - | chr5_3:5717243-5717262 | None:intergenic | 25.0% |
| ! | TTTGAAAAATTTGGAGATTG+TGG | + | chr5_3:5717243-5717262 | Msa0793900:CDS | 25.0% |
| ! | TGGTATTCTTTATTGTCATA+TGG | + | chr5_3:5717320-5717339 | Msa0793900:CDS | 25.0% |
| ! | TATTCTTTATTGTCATATGG+TGG | + | chr5_3:5717323-5717342 | Msa0793900:CDS | 25.0% |
| ! | TCAATGCTATAACTGAAAAT+AGG | + | chr5_3:5717463-5717482 | Msa0793900:three_prime_UTR | 25.0% |
| ! | CAATGCTATAACTGAAAATA+GGG | + | chr5_3:5717464-5717483 | Msa0793900:three_prime_UTR | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr5_3:5717557-5717576 | Msa0793900:three_prime_UTR | 25.0% |
| ! | AAACTTCCATATATTATCCA+AGG | + | chr5_3:5717662-5717681 | Msa0793900:three_prime_UTR | 25.0% |
| ! | TATATAATATAGACTCACCT+TGG | - | chr5_3:5717682-5717701 | None:intergenic | 25.0% |
| !!! | AATTCCGAGTTTTAAAATAG+GGG | - | chr5_3:5717763-5717782 | None:intergenic | 25.0% |
| ! | TTCCGAAAAACATTAAAATG+GGG | - | chr5_3:5717791-5717810 | None:intergenic | 25.0% |
| ! | TAATAAGATAATGTGGTAGA+GGG | - | chr5_3:5717821-5717840 | None:intergenic | 25.0% |
| ! | ATAATAAGATAATGTGGTAG+AGG | - | chr5_3:5717822-5717841 | None:intergenic | 25.0% |
| !!! | AGCATTTTTTCTGCATTTTA+AGG | - | chr5_3:5718043-5718062 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTTCGTTTATTC+AGG | - | chr5_3:5718096-5718115 | None:intergenic | 25.0% |
| ! | TATTATTGCACTCGTATATT+TGG | + | chr5_3:5718180-5718199 | Msa0793900:intron | 25.0% |
| ! | ACATGGAAAAACAGTATAAA+CGG | - | chr5_3:5718274-5718293 | None:intergenic | 25.0% |
| ! | TTCCGAAAAACATTAAATTG+GGG | + | chr5_3:5718597-5718616 | Msa0793900:intron | 25.0% |
| !!! | ATTCTGAGTTTTAAAATAGG+GGG | + | chr5_3:5718644-5718663 | Msa0793900:intron | 25.0% |
| ! | TTCCGAAAAACATTAAATTG+GGG | + | chr5_3:5718597-5718616 | Msa0793900:intron | 25.0% |
| !!! | ATTCCGAGTTTTAAAATAAG+GGG | + | chr5_3:5718704-5718723 | Msa0793900:intron | 25.0% |
| ! | CATGGTCATACATTAAATAT+AGG | - | chr5_3:5718779-5718798 | None:intergenic | 25.0% |
| ! | ATAAGAGACAAAAATGAAGT+TGG | + | chr5_3:5718839-5718858 | Msa0793900:intron | 25.0% |
| ! | AATTGATGGAGAAACAAAAA+AGG | + | chr5_3:5718912-5718931 | Msa0793900:three_prime_UTR | 25.0% |
| !! | CAATGAAAAACTTCCTTTTA+AGG | - | chr5_3:5718976-5718995 | None:intergenic | 25.0% |
| !! | AAGTGTTGTTCACTATAAAA+CGG | - | chr5_3:5719236-5719255 | None:intergenic | 25.0% |
| TAAGGTGTAAGTAAAGGAAT+AGG | - | chr5_3:5711289-5711308 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAAGTAA+AGG | - | chr5_3:5711295-5711314 | None:intergenic | 30.0% | |
| TTTACTTACACCTTACAAGA+TGG | + | chr5_3:5711294-5711313 | Msa0793900:CDS | 30.0% | |
| TTACTTACACCTTACAAGAT+GGG | + | chr5_3:5711295-5711314 | Msa0793900:CDS | 30.0% | |
| ! | TCATCATTTCAGAGTTGTTT+TGG | + | chr5_3:5711407-5711426 | Msa0793900:intron | 30.0% |
| TATGATCTCATTCTTGTTAG+TGG | - | chr5_3:5711435-5711454 | None:intergenic | 30.0% | |
| ! | TAAATAAAAGTGTGACCAGA+AGG | + | chr5_3:5711727-5711746 | Msa0793900:intron | 30.0% |
| ! | TTGATGATCTTAACCAATTG+AGG | - | chr5_3:5711771-5711790 | None:intergenic | 30.0% |
| ! | GGTAATGGTAAAATTATGCT+AGG | - | chr5_3:5711807-5711826 | None:intergenic | 30.0% |
| GTTATATTTGAGCTAGGTAA+TGG | - | chr5_3:5711822-5711841 | None:intergenic | 30.0% | |
| CTCAAATATAACATGCTCTA+AGG | + | chr5_3:5711830-5711849 | Msa0793900:intron | 30.0% | |
| !! | AAATATAACATGCTCTAAGG+CGG | + | chr5_3:5711833-5711852 | Msa0793900:intron | 30.0% |
| TTCTATCAAATTTGGCATGT+TGG | + | chr5_3:5711863-5711882 | Msa0793900:intron | 30.0% | |
| TTTGTTGCAGAAAGTAGTAA+TGG | + | chr5_3:5712143-5712162 | Msa0793900:intron | 30.0% | |
| CGCTAATAACTTCAATAATG+TGG | - | chr5_3:5712198-5712217 | None:intergenic | 30.0% | |
| !! | AATAAAATGATTTGGGTTGG+AGG | + | chr5_3:5712290-5712309 | Msa0793900:intron | 30.0% |
| CAAATAGAATACTCACTGTA+TGG | + | chr5_3:5712343-5712362 | Msa0793900:intron | 30.0% | |
| AACTGTTAGATTAACAAGGA+AGG | - | chr5_3:5712376-5712395 | None:intergenic | 30.0% | |
| CTGAAATCATTGACAATATG+AGG | - | chr5_3:5712504-5712523 | None:intergenic | 30.0% | |
| TTCAATGTGATGTAAATTGC+AGG | + | chr5_3:5712688-5712707 | Msa0793900:intron | 30.0% | |
| !! | ATGTAAATTGCAGGTTTTGA+TGG | + | chr5_3:5712697-5712716 | Msa0793900:intron | 30.0% |
| !! | TGTAAATTGCAGGTTTTGAT+GGG | + | chr5_3:5712698-5712717 | Msa0793900:intron | 30.0% |
| AATGACAGAACAGATGAATA+TGG | + | chr5_3:5712778-5712797 | Msa0793900:CDS | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr5_3:5712975-5712994 | Msa0793900:CDS | 30.0% | |
| ! | TCATCACCTGATTTTATTCT+TGG | - | chr5_3:5713006-5713025 | None:intergenic | 30.0% |
| TCAATGCTATAGCAGATAAT+AGG | + | chr5_3:5713118-5713137 | Msa0793900:CDS | 30.0% | |
| CAATGCTATAGCAGATAATA+GGG | + | chr5_3:5713119-5713138 | Msa0793900:CDS | 30.0% | |
| CTCCTCTCAATAAATATAAC+AGG | + | chr5_3:5713211-5713230 | Msa0793900:CDS | 30.0% | |
| TCCCTGTTATATTTATTGAG+AGG | - | chr5_3:5713216-5713235 | None:intergenic | 30.0% | |
| GCAACAAAAACAAATTTGCA+AGG | - | chr5_3:5713365-5713384 | None:intergenic | 30.0% | |
| TATCAAACACAAAGCTCATA+TGG | - | chr5_3:5713499-5713518 | None:intergenic | 30.0% | |
| ! | ATATGAGCTTTGTGTTTGAT+AGG | + | chr5_3:5713498-5713517 | Msa0793900:intron | 30.0% |
| TTCTTCTTCTCTTTAATTCC+GGG | - | chr5_3:5713526-5713545 | None:intergenic | 30.0% | |
| CTTCTTCTTCTCTTTAATTC+CGG | - | chr5_3:5713527-5713546 | None:intergenic | 30.0% | |
| ! | AGAAGAAGTGTATTCGAAAA+TGG | + | chr5_3:5713539-5713558 | Msa0793900:intron | 30.0% |
| GTGTGTAAAAGGCTATATAA+GGG | - | chr5_3:5713659-5713678 | None:intergenic | 30.0% | |
| AGTGTGTAAAAGGCTATATA+AGG | - | chr5_3:5713660-5713679 | None:intergenic | 30.0% | |
| ! | AGTGTAAGAAAGTGTGTAAA+AGG | - | chr5_3:5713670-5713689 | None:intergenic | 30.0% |
| !! | GATTTTAACAAGGTTTACCA+TGG | - | chr5_3:5714493-5714512 | None:intergenic | 30.0% |
| !! | ATGCCAAAGAGATTTTAACA+AGG | - | chr5_3:5714503-5714522 | None:intergenic | 30.0% |
| ATCTCCAAAAGTTCAATGAA+GGG | - | chr5_3:5714621-5714640 | None:intergenic | 30.0% | |
| AATCTCCAAAAGTTCAATGA+AGG | - | chr5_3:5714622-5714641 | None:intergenic | 30.0% | |
| TAATCATTACCTGTGTAGAT+AGG | + | chr5_3:5714654-5714673 | Msa0793900:intron | 30.0% | |
| ! | GTTCCCTAATTTTGTAAGAA+TGG | + | chr5_3:5714780-5714799 | Msa0793900:intron | 30.0% |
| ! | GAATCTTCACCATGAAATTT+TGG | + | chr5_3:5714817-5714836 | Msa0793900:intron | 30.0% |
| ! | TTTAACGTTCTAAACATGCT+TGG | + | chr5_3:5714964-5714983 | Msa0793900:intron | 30.0% |
| ATAGTATGATTGTATGTGTG+TGG | - | chr5_3:5715303-5715322 | None:intergenic | 30.0% | |
| TATGCAATTCAATTTGAGAG+GGG | - | chr5_3:5715349-5715368 | None:intergenic | 30.0% | |
| TAAGGTGTAATAAGAGGAAT+GGG | - | chr5_3:5715450-5715469 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAATAAG+AGG | - | chr5_3:5715456-5715475 | None:intergenic | 30.0% | |
| TCTTATTACACCTTACAAGA+TGG | + | chr5_3:5715455-5715474 | Msa0793900:CDS | 30.0% | |
| CTTATTACACCTTACAAGAT+GGG | + | chr5_3:5715456-5715475 | Msa0793900:CDS | 30.0% | |
| GCATATTTCCTTTATGTTAG+AGG | + | chr5_3:5716047-5716066 | Msa0793900:intron | 30.0% | |
| AGCATATTTCCCTAAACATA+GGG | + | chr5_3:5716078-5716097 | Msa0793900:intron | 30.0% | |
| AAGTGACAGGTGTATAATTT+GGG | - | chr5_3:5716333-5716352 | None:intergenic | 30.0% | |
| AAAGTGACAGGTGTATAATT+TGG | - | chr5_3:5716334-5716353 | None:intergenic | 30.0% | |
| TGACAAACTGTATGGAATAT+AGG | - | chr5_3:5716651-5716670 | None:intergenic | 30.0% | |
| ATACAGTTTGTCAACCAAAT+GGG | + | chr5_3:5716658-5716677 | Msa0793900:intron | 30.0% | |
| AGTTTGTCTGTTGAAGATAT+TGG | - | chr5_3:5716690-5716709 | None:intergenic | 30.0% | |
| !! | GTGAAAATTGTAGGTTTTGA+TGG | + | chr5_3:5717042-5717061 | Msa0793900:intron | 30.0% |
| !! | GAAAATTGTAGGTTTTGATG+GGG | + | chr5_3:5717044-5717063 | Msa0793900:intron | 30.0% |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5_3:5717095-5717114 | None:intergenic | 30.0% | |
| ! | CAAATCTACAACGATTTTCA+AGG | - | chr5_3:5717155-5717174 | None:intergenic | 30.0% |
| ATATAAAGTCCCAATTCTTG+GGG | - | chr5_3:5717279-5717298 | None:intergenic | 30.0% | |
| CATATAAAGTCCCAATTCTT+GGG | - | chr5_3:5717280-5717299 | None:intergenic | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | chr5_3:5717300-5717319 | Msa0793900:CDS | 30.0% | |
| TCATCAACAATTTCCATTCA+TGG | - | chr5_3:5717351-5717370 | None:intergenic | 30.0% | |
| AACTGAATGTCATTATAGCT+TGG | + | chr5_3:5717374-5717393 | Msa0793900:three_prime_UTR | 30.0% | |
| ! | GGTTTTCAATGGAACTTTTA+TGG | + | chr5_3:5717410-5717429 | Msa0793900:three_prime_UTR | 30.0% |
| ! | AATGGAACTTTTATGGTTAC+TGG | + | chr5_3:5717417-5717436 | Msa0793900:three_prime_UTR | 30.0% |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr5_3:5717556-5717575 | Msa0793900:three_prime_UTR | 30.0% | |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr5_3:5717561-5717580 | None:intergenic | 30.0% |
| TCATGGATCATTCAAGAAAA+GGG | - | chr5_3:5717626-5717645 | None:intergenic | 30.0% | |
| AATATATGGAAGTTTCACCT+TGG | - | chr5_3:5717657-5717676 | None:intergenic | 30.0% | |
| ATTCCGATTCAGTCAAAATA+GGG | - | chr5_3:5718733-5718752 | None:intergenic | 30.0% | |
| AATTCCGATTCAGTCAAAAT+AGG | - | chr5_3:5718732-5718751 | None:intergenic | 30.0% | |
| !!! | ATTCCGAGTTTTAAAATAGG+GGG | - | chr5_3:5717762-5717781 | None:intergenic | 30.0% |
| TCCGAAAAACATTAAAATGG+GGG | - | chr5_3:5717790-5717809 | None:intergenic | 30.0% | |
| AATAAGATAATGTGGTAGAG+GGG | - | chr5_3:5717820-5717839 | None:intergenic | 30.0% | |
| AGGTGGATAATAAGATAATG+TGG | - | chr5_3:5718560-5718579 | None:intergenic | 30.0% | |
| AGGTGGATAATAAGATAATG+TGG | + | chr5_3:5718560-5718579 | Msa0793900:intron | 30.0% | |
| TGGATAATAAGATAATGTGG+TGG | + | chr5_3:5718563-5718582 | Msa0793900:intron | 30.0% | |
| ATAATAAGATAATGTGGTGG+AGG | + | chr5_3:5718566-5718585 | Msa0793900:intron | 30.0% | |
| ! | TAATAAGATAATGTGGTGGA+GGG | + | chr5_3:5718567-5718586 | Msa0793900:intron | 30.0% |
| TCCGAAAAACATTAAATTGG+GGG | + | chr5_3:5718598-5718617 | Msa0793900:intron | 30.0% | |
| !!! | TTCTGAGTTTTAAAATAGGG+GGG | + | chr5_3:5718645-5718664 | Msa0793900:intron | 30.0% |
| TCCGAAAAACATTAAATTGG+GGG | + | chr5_3:5718598-5718617 | Msa0793900:intron | 30.0% | |
| !!! | TTCCGAGTTTTAAAATAAGG+GGG | + | chr5_3:5718705-5718724 | Msa0793900:intron | 30.0% |
| AATTCCGATTCAGTCAAAAT+AGG | + | chr5_3:5718732-5718751 | Msa0793900:intron | 30.0% | |
| ATTCCGATTCAGTCAAAATA+GGG | + | chr5_3:5718733-5718752 | Msa0793900:intron | 30.0% | |
| AACAGTATTAACTCTTGTTG+TGG | + | chr5_3:5718810-5718829 | Msa0793900:intron | 30.0% | |
| ! | AAAGGAAGTTTTTCATTGAG+AGG | + | chr5_3:5718978-5718997 | Msa0793900:three_prime_UTR | 30.0% |
| ! | AAGGAAGTTTTTCATTGAGA+GGG | + | chr5_3:5718979-5718998 | Msa0793900:three_prime_UTR | 30.0% |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5_3:5711307-5711326 | None:intergenic | 35.0% | |
| ! | GCAAATTCAATCTAGCTCAT+AGG | + | chr5_3:5711317-5711336 | Msa0793900:CDS | 35.0% |
| TATTCTCAGAGAACCTCTAA+AGG | + | chr5_3:5711489-5711508 | Msa0793900:CDS | 35.0% | |
| TATGAGAAAACCACCTTTAG+AGG | - | chr5_3:5711505-5711524 | None:intergenic | 35.0% | |
| GAGCATGTTATATTTGAGCT+AGG | - | chr5_3:5711828-5711847 | None:intergenic | 35.0% | |
| GTTGGAAGAGTTTCAAATTC+AGG | + | chr5_3:5711881-5711900 | Msa0793900:intron | 35.0% | |
| CTAACAGTTTATCAACCGAA+TGG | + | chr5_3:5712387-5712406 | Msa0793900:intron | 35.0% | |
| GACTTGTCTGTAGAAGATAT+TGG | - | chr5_3:5712420-5712439 | None:intergenic | 35.0% | |
| ATTGAAGCTGGTAAGTTTAC+TGG | + | chr5_3:5712543-5712562 | Msa0793900:intron | 35.0% | |
| !! | GGTAAGTTTACTGGTCTTTA+CGG | + | chr5_3:5712552-5712571 | Msa0793900:intron | 35.0% |
| !! | GTAAATTGCAGGTTTTGATG+GGG | + | chr5_3:5712699-5712718 | Msa0793900:intron | 35.0% |
| CTTTCATGAATTGTTCAGGT+AGG | - | chr5_3:5712750-5712769 | None:intergenic | 35.0% | |
| CTTTCTGCATATTCTGCAAA+TGG | - | chr5_3:5712898-5712917 | None:intergenic | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | chr5_3:5712921-5712940 | Msa0793900:CDS | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | chr5_3:5712922-5712941 | Msa0793900:CDS | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | - | chr5_3:5712934-5712953 | None:intergenic | 35.0% | |
| AAATGCATTGGGACTTCATA+TGG | + | chr5_3:5712933-5712952 | Msa0793900:CDS | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr5_3:5712978-5712997 | Msa0793900:CDS | 35.0% | |
| GTGGAACCAAGAATAAAATC+AGG | + | chr5_3:5712997-5713016 | Msa0793900:CDS | 35.0% | |
| ACAAACGACCATAAACAACA+AGG | - | chr5_3:5713149-5713168 | None:intergenic | 35.0% | |
| GCATTAAGAGCAAATCTCTT+TGG | - | chr5_3:5713192-5713211 | None:intergenic | 35.0% | |
| GACATTCTACATTTCTGATC+CGG | + | chr5_3:5713236-5713255 | Msa0793900:CDS | 35.0% | |
| ATGTTGTATTGTAGCATCCA+AGG | + | chr5_3:5713302-5713321 | Msa0793900:intron | 35.0% | |
| CAAATGCATGTTTCAATGTG+CGG | - | chr5_3:5713635-5713654 | None:intergenic | 35.0% | |
| ! | GTTTAGGGGAGGATTTTATT+AGG | - | chr5_3:5713720-5713739 | None:intergenic | 35.0% |
| TATAGCAGTGTTCAGTTTAG+GGG | - | chr5_3:5713734-5713753 | None:intergenic | 35.0% | |
| CTATAGCAGTGTTCAGTTTA+GGG | - | chr5_3:5713735-5713754 | None:intergenic | 35.0% | |
| ! | TCTTTTGCAATCTAAGAGAG+AGG | - | chr5_3:5713783-5713802 | None:intergenic | 35.0% |
| AAAGGCTTAGTCATTATGTC+TGG | + | chr5_3:5713813-5713832 | Msa0793900:intron | 35.0% | |
| GAAACAATTGTTCCTTTGAG+AGG | + | chr5_3:5713859-5713878 | Msa0793900:intron | 35.0% | |
| CATGCAAGCATATTGATGTT+AGG | - | chr5_3:5713902-5713921 | None:intergenic | 35.0% | |
| AGAAGAATTCACAGTTAGCT+TGG | - | chr5_3:5714008-5714027 | None:intergenic | 35.0% | |
| TTTGTGCTTGTCAAGGTAAA+GGG | - | chr5_3:5714034-5714053 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGTCAAGGTAA+AGG | - | chr5_3:5714035-5714054 | None:intergenic | 35.0% |
| CATTCTCCACAACAAAAGAA+GGG | - | chr5_3:5714073-5714092 | None:intergenic | 35.0% | |
| ACATTCTCCACAACAAAAGA+AGG | - | chr5_3:5714074-5714093 | None:intergenic | 35.0% | |
| ! | ATGTCTTCATGTTTGGTTCA+GGG | - | chr5_3:5714133-5714152 | None:intergenic | 35.0% |
| ! | TATGTCTTCATGTTTGGTTC+AGG | - | chr5_3:5714134-5714153 | None:intergenic | 35.0% |
| !! | GATGATAAAAAGAGCACTTC+AGG | - | chr5_3:5714158-5714177 | None:intergenic | 35.0% |
| TGTATAGAAGCCAAGACTTA+TGG | + | chr5_3:5714237-5714256 | Msa0793900:intron | 35.0% | |
| !! | TTGCAACTAAGAGAGTACTT+AGG | - | chr5_3:5714276-5714295 | None:intergenic | 35.0% |
| !! | GCAACTAAGTGCATTTTAGT+TGG | + | chr5_3:5714292-5714311 | Msa0793900:intron | 35.0% |
| AGATGAAAACTGTAGAGCAA+TGG | - | chr5_3:5714418-5714437 | None:intergenic | 35.0% | |
| ! | CTTTCCCTTCATTGAACTTT+TGG | + | chr5_3:5714614-5714633 | Msa0793900:intron | 35.0% |
| GTAGATAAACCTATCTACAC+AGG | - | chr5_3:5714666-5714685 | None:intergenic | 35.0% | |
| TTTCAGACATCGTCTTCATT+GGG | + | chr5_3:5715115-5715134 | Msa0793900:intron | 35.0% | |
| AAATGTGAAGGACGATAAGA+TGG | + | chr5_3:5715247-5715266 | Msa0793900:intron | 35.0% | |
| ! | TGGTGATGTTGATTATGCTT+TGG | - | chr5_3:5715283-5715302 | None:intergenic | 35.0% |
| ATGCAATTCAATTTGAGAGG+GGG | - | chr5_3:5715348-5715367 | None:intergenic | 35.0% | |
| GTAAGGTGTAATAAGAGGAA+TGG | - | chr5_3:5715451-5715470 | None:intergenic | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5_3:5711307-5711326 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr5_3:5715478-5715497 | Msa0793900:CDS | 35.0% | |
| !! | CAACTCTGAAATGCAAGATA+AGG | - | chr5_3:5715574-5715593 | None:intergenic | 35.0% |
| ! | CTTGCATTTCAGAGTTGTTT+TGG | + | chr5_3:5715577-5715596 | Msa0793900:intron | 35.0% |
| TAGGATCTTATTCTAGTGAG+TGG | - | chr5_3:5715605-5715624 | None:intergenic | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | chr5_3:5715605-5715624 | Msa0793900:CDS | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | chr5_3:5715675-5715694 | None:intergenic | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5_3:5715813-5715832 | Msa0793900:intron | 35.0% | |
| ! | TCGCAACTTTTGCAAACTTA+GGG | - | chr5_3:5716138-5716157 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | - | chr5_3:5716137-5716156 | None:intergenic | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | + | chr5_3:5715905-5715924 | Msa0793900:intron | 35.0% |
| !! | TCAGTAATTTTTGGACGAAG+GGG | - | chr5_3:5715961-5715980 | None:intergenic | 35.0% |
| !! | CTCAGTAATTTTTGGACGAA+GGG | - | chr5_3:5715962-5715981 | None:intergenic | 35.0% |
| !! | TCTCAGTAATTTTTGGACGA+AGG | - | chr5_3:5715963-5715982 | None:intergenic | 35.0% |
| GTCCAAAAATTACTGAGAAG+AGG | + | chr5_3:5715965-5715984 | Msa0793900:intron | 35.0% | |
| !!! | TGCAATTATGCCCCTTTTTT+GGG | - | chr5_3:5715999-5716018 | None:intergenic | 35.0% |
| !!! | TTGCAATTATGCCCCTTTTT+TGG | - | chr5_3:5716000-5716019 | None:intergenic | 35.0% |
| ! | CTTTTGACCCTCTAACATAA+AGG | - | chr5_3:5716058-5716077 | None:intergenic | 35.0% |
| GAGCATATTTCCCTAAACAT+AGG | + | chr5_3:5716077-5716096 | Msa0793900:intron | 35.0% | |
| GCATATTTCCCTAAACATAG+GGG | + | chr5_3:5716079-5716098 | Msa0793900:intron | 35.0% | |
| CATATTTCCCTAAACATAGG+GGG | + | chr5_3:5716080-5716099 | Msa0793900:intron | 35.0% | |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | - | chr5_3:5715905-5715924 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | + | chr5_3:5716137-5716156 | Msa0793900:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | + | chr5_3:5716138-5716157 | Msa0793900:intron | 35.0% |
| CATTGGTATTGTAAAGTGAC+AGG | - | chr5_3:5716346-5716365 | None:intergenic | 35.0% | |
| ! | CCCAAATTGTATGACGTTTT+GGG | - | chr5_3:5716540-5716559 | None:intergenic | 35.0% |
| CCCAAAACGTCATACAATTT+GGG | + | chr5_3:5716537-5716556 | Msa0793900:intron | 35.0% | |
| ! | TCCCAAATTGTATGACGTTT+TGG | - | chr5_3:5716541-5716560 | None:intergenic | 35.0% |
| AAACGTCATACAATTTGGGA+CGG | + | chr5_3:5716541-5716560 | Msa0793900:intron | 35.0% | |
| CATTTGGTTGACAAACTGTA+TGG | - | chr5_3:5716659-5716678 | None:intergenic | 35.0% | |
| CATACAGTTTGTCAACCAAA+TGG | + | chr5_3:5716657-5716676 | Msa0793900:intron | 35.0% | |
| AAACTACTCACACCACAAAT+TGG | + | chr5_3:5716705-5716724 | Msa0793900:CDS | 35.0% | |
| AACGACAGAACAGATGAATA+TGG | + | chr5_3:5717123-5717142 | Msa0793900:CDS | 35.0% | |
| GAAGCTATTGCAAATGAGAT+AGG | + | chr5_3:5717189-5717208 | Msa0793900:CDS | 35.0% | |
| CCATATAAAGTCCCAATTCT+TGG | - | chr5_3:5717281-5717300 | None:intergenic | 35.0% | |
| CCAAGAATTGGGACTTTATA+TGG | + | chr5_3:5717278-5717297 | Msa0793900:CDS | 35.0% | |
| CCATTGAAAACCTTTCTCAT+TGG | - | chr5_3:5717402-5717421 | None:intergenic | 35.0% | |
| ! | CCAATGAGAAAGGTTTTCAA+TGG | + | chr5_3:5717399-5717418 | Msa0793900:three_prime_UTR | 35.0% |
| GCAAATCTCTTTGGTAAATC+TGG | - | chr5_3:5717528-5717547 | None:intergenic | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | chr5_3:5717537-5717556 | None:intergenic | 35.0% | |
| TACACTTCTGATCCAATTCT+TGG | + | chr5_3:5717588-5717607 | Msa0793900:three_prime_UTR | 35.0% | |
| TAGTCGGTATAACCAAGAAT+TGG | - | chr5_3:5717603-5717622 | None:intergenic | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | - | chr5_3:5717619-5717638 | None:intergenic | 35.0% | |
| CTCATGGATCATTCAAGAAA+AGG | - | chr5_3:5717627-5717646 | None:intergenic | 35.0% | |
| ! | CTTTTCTTGAATGATCCATG+AGG | + | chr5_3:5717625-5717644 | Msa0793900:three_prime_UTR | 35.0% |
| GACTCACCTTGGATAATATA+TGG | - | chr5_3:5717671-5717690 | None:intergenic | 35.0% | |
| TTCCGATTCAGTCAAAATAG+GGG | - | chr5_3:5718734-5718753 | None:intergenic | 35.0% | |
| !!! | TTCCGAGTTTTAAAATAGGG+GGG | - | chr5_3:5717761-5717780 | None:intergenic | 35.0% |
| CCGAAAAACATTAAAATGGG+GGG | - | chr5_3:5717789-5717808 | None:intergenic | 35.0% | |
| !! | CCCCCCATTTTAATGTTTTT+CGG | + | chr5_3:5717786-5717805 | Msa0793900:intron | 35.0% |
| ATAAGATAATGTGGTAGAGG+GGG | - | chr5_3:5717819-5717838 | None:intergenic | 35.0% | |
| ! | AATAAGATAATGTGGTGGAG+GGG | + | chr5_3:5718568-5718587 | Msa0793900:intron | 35.0% |
| ! | CCCCCCAATTTAATGTTTTT+CGG | - | chr5_3:5718602-5718621 | None:intergenic | 35.0% |
| CCGAAAAACATTAAATTGGG+GGG | + | chr5_3:5718599-5718618 | Msa0793900:intron | 35.0% | |
| CGAAAAACATTAAATTGGGG+GGG | + | chr5_3:5718600-5718619 | Msa0793900:intron | 35.0% | |
| GAAAAACATTAAATTGGGGG+GGG | + | chr5_3:5718601-5718620 | Msa0793900:intron | 35.0% | |
| AAAAACATTAAATTGGGGGG+GGG | + | chr5_3:5718602-5718621 | Msa0793900:intron | 35.0% | |
| !!! | TCTGAGTTTTAAAATAGGGG+GGG | + | chr5_3:5718646-5718665 | Msa0793900:intron | 35.0% |
| ! | CCCCCCAATTTAATGTTTTT+CGG | - | chr5_3:5718602-5718621 | None:intergenic | 35.0% |
| CCGAAAAACATTAAATTGGG+GGG | + | chr5_3:5718599-5718618 | Msa0793900:intron | 35.0% | |
| CGAAAAACATTAAATTGGGG+GGG | + | chr5_3:5718600-5718619 | Msa0793900:intron | 35.0% | |
| !!! | TCCGAGTTTTAAAATAAGGG+GGG | + | chr5_3:5718706-5718725 | Msa0793900:intron | 35.0% |
| !!! | ACCCCCCTTATTTTAAAACT+CGG | - | chr5_3:5718710-5718729 | None:intergenic | 35.0% |
| TTCCGATTCAGTCAAAATAG+GGG | + | chr5_3:5718734-5718753 | Msa0793900:intron | 35.0% | |
| GGTCATGTTAAACAATATCC+CGG | + | chr5_3:5718933-5718952 | Msa0793900:three_prime_UTR | 35.0% | |
| !!! | CCTTTTAAGGCTTCCTTAAT+CGG | - | chr5_3:5718963-5718982 | None:intergenic | 35.0% |
| ! | AGGAAGTTTTTCATTGAGAG+GGG | + | chr5_3:5718980-5718999 | Msa0793900:three_prime_UTR | 35.0% |
| ACCAATGAAAAACGCTCTTT+AGG | + | chr5_3:5719064-5719083 | Msa0793900:three_prime_UTR | 35.0% | |
| ! | GAGTATTTTCGTCATTACGA+AGG | - | chr5_3:5719112-5719131 | None:intergenic | 35.0% |
| !! | TACTTGATAGCAATGGGTTG+AGG | - | chr5_3:5711468-5711487 | None:intergenic | 40.0% |
| TTTCTCATAGCTGAAGCTAC+TGG | + | chr5_3:5711516-5711535 | Msa0793900:CDS | 40.0% | |
| ATCCAAACACACCAGGTATA+TGG | + | chr5_3:5711562-5711581 | Msa0793900:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5_3:5711576-5711595 | None:intergenic | 40.0% | |
| ! | ATGGACTAAAGAGCATGTTG+AGG | + | chr5_3:5711581-5711600 | Msa0793900:CDS | 40.0% |
| GTGGAAACCTATTGTAGATG+CGG | + | chr5_3:5711605-5711624 | Msa0793900:CDS | 40.0% | |
| TCATGAACCGCATCTACAAT+AGG | - | chr5_3:5711615-5711634 | None:intergenic | 40.0% | |
| TTCTGTCAAATTTGGCATGC+TGG | + | chr5_3:5711651-5711670 | Msa0793900:intron | 40.0% | |
| TCAAATTTGGCATGCTGGAA+GGG | + | chr5_3:5711656-5711675 | Msa0793900:intron | 40.0% | |
| ACACAAATGGTTAGACCTTC+TGG | - | chr5_3:5711745-5711764 | None:intergenic | 40.0% | |
| CCAATTGAGGTTGACACAAA+TGG | - | chr5_3:5711758-5711777 | None:intergenic | 40.0% | |
| CCATTTGTGTCAACCTCAAT+TGG | + | chr5_3:5711755-5711774 | Msa0793900:intron | 40.0% | |
| ACACACTTCCAATTCACAAC+TGG | + | chr5_3:5711972-5711991 | Msa0793900:intron | 40.0% | |
| CAATTCACAACTGGTGCAAA+CGG | + | chr5_3:5711981-5712000 | Msa0793900:intron | 40.0% | |
| AGCTGATGATCTGAACCAAT+CGG | - | chr5_3:5712031-5712050 | None:intergenic | 40.0% | |
| ACGTGACACAAGCTACAAAT+AGG | + | chr5_3:5712169-5712188 | Msa0793900:intron | 40.0% | |
| ! | GATATTGGTGCTTGTCCATT+CGG | - | chr5_3:5712405-5712424 | None:intergenic | 40.0% |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5_3:5712531-5712550 | Msa0793900:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5_3:5712712-5712731 | Msa0793900:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+CGG | + | chr5_3:5712781-5712800 | Msa0793900:CDS | 40.0% | |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | chr5_3:5712813-5712832 | Msa0793900:CDS | 40.0% |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr5_3:5712832-5712851 | None:intergenic | 40.0% | |
| GAGATAGGAGCAGATAAAGT+TGG | + | chr5_3:5712859-5712878 | Msa0793900:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr5_3:5713057-5713076 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr5_3:5713054-5713073 | Msa0793900:CDS | 40.0% | |
| GGCTTTCAATGGTACTTTCA+TGG | + | chr5_3:5713065-5713084 | Msa0793900:intron | 40.0% | |
| AATGGTACTTTCATGGTTGC+AGG | + | chr5_3:5713072-5713091 | Msa0793900:intron | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5_3:5713183-5713202 | None:intergenic | 40.0% | |
| ATTCTACATTTCTGATCCGG+TGG | + | chr5_3:5713239-5713258 | Msa0793900:CDS | 40.0% | |
| TGTATTGTAGCATCCAAGGT+TGG | + | chr5_3:5713306-5713325 | Msa0793900:intron | 40.0% | |
| CTTTGTGTTTGATAGGATCC+CGG | + | chr5_3:5713505-5713524 | Msa0793900:intron | 40.0% | |
| CGCACATTGAAACATGCATT+TGG | + | chr5_3:5713633-5713652 | Msa0793900:intron | 40.0% | |
| GCTATAGCAGTGTTCAGTTT+AGG | - | chr5_3:5713736-5713755 | None:intergenic | 40.0% | |
| GCAAAAGACTCAAGCTTCAA+AGG | + | chr5_3:5713795-5713814 | Msa0793900:intron | 40.0% | |
| ! | TTGCATGTGTCAAGCATTGT+AGG | + | chr5_3:5713915-5713934 | Msa0793900:intron | 40.0% |
| ! | GTTAGCTTGGACAATCTCAA+AGG | - | chr5_3:5713995-5714014 | None:intergenic | 40.0% |
| ! | ACTGCATTTTGTGCTTGTCA+AGG | - | chr5_3:5714041-5714060 | None:intergenic | 40.0% |
| CACAACAAAAGAAGGGTTTG+TGG | - | chr5_3:5714066-5714085 | None:intergenic | 40.0% | |
| ! | CACAAACCCTTCTTTTGTTG+TGG | + | chr5_3:5714064-5714083 | Msa0793900:intron | 40.0% |
| GTTGTGGAGAATGTCAGAAT+TGG | + | chr5_3:5714080-5714099 | Msa0793900:intron | 40.0% | |
| TTGGTTCAGGGGATATATCT+TGG | - | chr5_3:5714121-5714140 | None:intergenic | 40.0% | |
| ! | TGTCTTCATGTTTGGTTCAG+GGG | - | chr5_3:5714132-5714151 | None:intergenic | 40.0% |
| TCAGGCTATGTCTTCATGTT+TGG | - | chr5_3:5714140-5714159 | None:intergenic | 40.0% | |
| ! | AGCATTATGATGGAAGTGCA+GGG | - | chr5_3:5714212-5714231 | None:intergenic | 40.0% |
| ! | AAGCATTATGATGGAAGTGC+AGG | - | chr5_3:5714213-5714232 | None:intergenic | 40.0% |
| CTGAATGGTACCATAAGTCT+TGG | - | chr5_3:5714250-5714269 | None:intergenic | 40.0% | |
| ! | AGAGTACTTAGGCATCTGAA+TGG | - | chr5_3:5714265-5714284 | None:intergenic | 40.0% |
| GAGCGTTTCTGATAGCTATA+TGG | - | chr5_3:5714323-5714342 | None:intergenic | 40.0% | |
| ACAAAGCATAAGCAGATGGT+GGG | - | chr5_3:5714390-5714409 | None:intergenic | 40.0% | |
| AACAAAGCATAAGCAGATGG+TGG | - | chr5_3:5714391-5714410 | None:intergenic | 40.0% | |
| CGAAACAAAGCATAAGCAGA+TGG | - | chr5_3:5714394-5714413 | None:intergenic | 40.0% | |
| TACCATGTTGCAATGTTCCA+TGG | + | chr5_3:5714473-5714492 | Msa0793900:intron | 40.0% | |
| TACCATGGAACATTGCAACA+TGG | - | chr5_3:5714478-5714497 | None:intergenic | 40.0% | |
| ! | CTTTGGCATGTTTCTGTTGA+TGG | + | chr5_3:5714514-5714533 | Msa0793900:intron | 40.0% |
| !! | AAGTTTGCTGTGACTGACTT+TGG | - | chr5_3:5714597-5714616 | None:intergenic | 40.0% |
| TTGTTAGCATTCATGGCGAA+GGG | - | chr5_3:5714713-5714732 | None:intergenic | 40.0% | |
| ATTGTTAGCATTCATGGCGA+AGG | - | chr5_3:5714714-5714733 | None:intergenic | 40.0% | |
| TCGGAGTAAGCATATACTGA+CGG | + | chr5_3:5714747-5714766 | Msa0793900:intron | 40.0% | |
| CTTTCAGACATCGTCTTCAT+TGG | + | chr5_3:5715114-5715133 | Msa0793900:intron | 40.0% | |
| !! | AATTTGAGAGGGGGTTGATA+GGG | - | chr5_3:5715339-5715358 | None:intergenic | 40.0% |
| CTGTCCTCTATTACTCTCAA+AGG | + | chr5_3:5715648-5715667 | Msa0793900:CDS | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | chr5_3:5715655-5715674 | None:intergenic | 40.0% |
| TACTCTCAAAGGTCCTCTAA+AGG | + | chr5_3:5715659-5715678 | Msa0793900:CDS | 40.0% | |
| CTTCTTATAGCTGAAGCTAC+TGG | + | chr5_3:5715686-5715705 | Msa0793900:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5_3:5711576-5711595 | None:intergenic | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr5_3:5715751-5715770 | Msa0793900:CDS | 40.0% |
| GCATGAACAGCATCTACAAT+GGG | - | chr5_3:5715785-5715804 | None:intergenic | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5_3:5715807-5715826 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5_3:5715821-5715840 | Msa0793900:intron | 40.0% | |
| AAACTTAGGGGGCAAAAAGT+GGG | - | chr5_3:5716151-5716170 | None:intergenic | 40.0% | |
| ! | GCAACTTTTGCAAACTTAGG+GGG | - | chr5_3:5716140-5716159 | None:intergenic | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | - | chr5_3:5716139-5716158 | None:intergenic | 40.0% |
| !! | CAGTAATTTTTGGACGAAGG+GGG | - | chr5_3:5715960-5715979 | None:intergenic | 40.0% |
| ! | GGCCTCTTCTCAGTAATTTT+TGG | - | chr5_3:5715970-5715989 | None:intergenic | 40.0% |
| TTAGTGACCCCCTATGTTTA+GGG | - | chr5_3:5716090-5716109 | None:intergenic | 40.0% | |
| ATTAGTGACCCCCTATGTTT+AGG | - | chr5_3:5716091-5716110 | None:intergenic | 40.0% | |
| ! | CGCAACTTTTGCAAACTTAG+GGG | + | chr5_3:5716139-5716158 | Msa0793900:intron | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | + | chr5_3:5716140-5716159 | Msa0793900:intron | 40.0% |
| AAACTTAGGGGGCAAAAAGT+GGG | + | chr5_3:5716151-5716170 | Msa0793900:intron | 40.0% | |
| GACATACAATTTGGGAAGGA+TGG | - | chr5_3:5716291-5716310 | None:intergenic | 40.0% | |
| AAGCGACATACAATTTGGGA+AGG | - | chr5_3:5716295-5716314 | None:intergenic | 40.0% | |
| ! | TCCCAAATTGTATGTCGCTT+TGG | + | chr5_3:5716295-5716314 | Msa0793900:intron | 40.0% |
| CCCAAAGCGACATACAATTT+GGG | - | chr5_3:5716299-5716318 | None:intergenic | 40.0% | |
| !! | CCCAAATTGTATGTCGCTTT+GGG | + | chr5_3:5716296-5716315 | Msa0793900:intron | 40.0% |
| TCCCAAAGCGACATACAATT+TGG | - | chr5_3:5716300-5716319 | None:intergenic | 40.0% | |
| GCCCAAAACGTCATACAATT+TGG | + | chr5_3:5716536-5716555 | Msa0793900:intron | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5_3:5712531-5712550 | Msa0793900:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5_3:5712712-5712731 | Msa0793900:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5_3:5712781-5712800 | Msa0793900:CDS | 40.0% | |
| AGACTCAAATCCCCAAGAAT+TGG | + | chr5_3:5717266-5717285 | Msa0793900:CDS | 40.0% | |
| GACTCAAATCCCCAAGAATT+GGG | + | chr5_3:5717267-5717286 | Msa0793900:CDS | 40.0% | |
| ! | GGAACTTTTATGGTTACTGG+AGG | + | chr5_3:5717420-5717439 | Msa0793900:three_prime_UTR | 40.0% |
| GGAGGCTATGAAAAACAAGA+TGG | + | chr5_3:5717438-5717457 | Msa0793900:three_prime_UTR | 40.0% | |
| AGGGCAGATCTTATTGCTTA+TGG | + | chr5_3:5717483-5717502 | Msa0793900:three_prime_UTR | 40.0% | |
| TCCGATTCAGTCAAAATAGG+GGG | - | chr5_3:5718735-5718754 | None:intergenic | 40.0% | |
| !!! | ACCCCCCCTATTTTAAAACT+CGG | + | chr5_3:5717756-5717775 | Msa0793900:intron | 40.0% |
| !!! | TCCGAGTTTTAAAATAGGGG+GGG | - | chr5_3:5717760-5717779 | None:intergenic | 40.0% |
| ! | ATAAGATAATGTGGTGGAGG+GGG | + | chr5_3:5718569-5718588 | Msa0793900:intron | 40.0% |
| AAAACATTAAATTGGGGGGG+GGG | + | chr5_3:5718603-5718622 | Msa0793900:intron | 40.0% | |
| TCCGATTCAGTCAAAATAGG+GGG | + | chr5_3:5718735-5718754 | Msa0793900:intron | 40.0% | |
| ! | TACTGTTGACTGTTGAGACA+TGG | - | chr5_3:5718797-5718816 | None:intergenic | 40.0% |
| ACAGGACACAGATCAATTGA+TGG | + | chr5_3:5718898-5718917 | Msa0793900:intron | 40.0% | |
| CCGATTAAGGAAGCCTTAAA+AGG | + | chr5_3:5718960-5718979 | Msa0793900:three_prime_UTR | 40.0% | |
| ! | AAGTTTTTCATTGAGAGGGG+TGG | + | chr5_3:5718983-5719002 | Msa0793900:three_prime_UTR | 40.0% |
| !!! | GCCTAAAGAGCGTTTTTCAT+TGG | - | chr5_3:5719068-5719087 | None:intergenic | 40.0% |
| ! | AGGCATTAATTGTTGCTTCC+AGG | + | chr5_3:5719084-5719103 | Msa0793900:three_prime_UTR | 40.0% |
| ! | TCTCAGAGAACCTCTAAAGG+TGG | + | chr5_3:5711492-5711511 | Msa0793900:CDS | 45.0% |
| GTCCATATACCTGGTGTGTT+TGG | - | chr5_3:5711567-5711586 | None:intergenic | 45.0% | |
| GTAGATGCGGTTCATGACAA+AGG | + | chr5_3:5711618-5711637 | Msa0793900:CDS | 45.0% | |
| GTCAAATTTGGCATGCTGGA+AGG | + | chr5_3:5711655-5711674 | Msa0793900:intron | 45.0% | |
| GCTGGAAGGGTTTCAAATTC+AGG | + | chr5_3:5711669-5711688 | Msa0793900:intron | 45.0% | |
| CGTTTGCACCAGTTGTGAAT+TGG | - | chr5_3:5711983-5712002 | None:intergenic | 45.0% | |
| TGATCTGAACCAATCGGTGT+AGG | - | chr5_3:5712025-5712044 | None:intergenic | 45.0% | |
| TCATCTGTCCTTAGTCGTCT+CGG | - | chr5_3:5712477-5712496 | None:intergenic | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5_3:5712721-5712740 | Msa0793900:CDS | 45.0% | |
| GAAGCAGTTGCGAATGAGAT+AGG | + | chr5_3:5712844-5712863 | Msa0793900:CDS | 45.0% | |
| GATTGAAAGCCCTTACAGTC+TGG | + | chr5_3:5713029-5713048 | Msa0793900:CDS | 45.0% | |
| TCATTGGCACCAGACTGTAA+GGG | - | chr5_3:5713041-5713060 | None:intergenic | 45.0% | |
| GAGGCTATGACAGACAAGAT+GGG | + | chr5_3:5713094-5713113 | Msa0793900:CDS | 45.0% | |
| !! | AGGGCAGACCTTGTTGTTTA+TGG | + | chr5_3:5713138-5713157 | Msa0793900:CDS | 45.0% |
| TACATTTCTGATCCGGTGGT+AGG | + | chr5_3:5713243-5713262 | Msa0793900:CDS | 45.0% | |
| TGATCCGGTGGTAGGTTATA+CGG | + | chr5_3:5713251-5713270 | Msa0793900:intron | 45.0% | |
| TAGTCCGTATAACCTACCAC+CGG | - | chr5_3:5713258-5713277 | None:intergenic | 45.0% | |
| GTTTCAATGTGCGGTGAGTT+GGG | - | chr5_3:5713626-5713645 | None:intergenic | 45.0% | |
| TGTTTCAATGTGCGGTGAGT+TGG | - | chr5_3:5713627-5713646 | None:intergenic | 45.0% | |
| CTTTCTCAGAGACCTCTCAA+AGG | - | chr5_3:5713874-5713893 | None:intergenic | 45.0% | |
| ! | TTGAGAGGTCTCTGAGAAAG+TGG | + | chr5_3:5713874-5713893 | Msa0793900:intron | 45.0% |
| ! | TGGTCAAGTTCTGACTATGC+AGG | - | chr5_3:5714188-5714207 | None:intergenic | 45.0% |
| ! | TTATGATGGAAGTGCAGGGA+TGG | - | chr5_3:5714208-5714227 | None:intergenic | 45.0% |
| CAAAGCATAAGCAGATGGTG+GGG | - | chr5_3:5714389-5714408 | None:intergenic | 45.0% | |
| ! | TTGCTGTGACTGACTTTGGA+GGG | - | chr5_3:5714593-5714612 | None:intergenic | 45.0% |
| ! | TTTGCTGTGACTGACTTTGG+AGG | - | chr5_3:5714594-5714613 | None:intergenic | 45.0% |
| CGGAGTAAGCATATACTGAC+GGG | + | chr5_3:5714748-5714767 | Msa0793900:intron | 45.0% | |
| ! | CAATTTGAGAGGGGGTTGAT+AGG | - | chr5_3:5715340-5715359 | None:intergenic | 45.0% |
| AGGTTGAGGAACTTTGCCAT+AGG | - | chr5_3:5715624-5715643 | None:intergenic | 45.0% | |
| GAGTAATAGAGGACAGCATG+AGG | - | chr5_3:5715644-5715663 | None:intergenic | 45.0% | |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | chr5_3:5715662-5715681 | Msa0793900:CDS | 45.0% |
| ATCCAGACACACCAGGTATA+TGG | + | chr5_3:5715732-5715751 | Msa0793900:CDS | 45.0% | |
| ! | CTAAAGAGCAAGTTGAGGCA+TGG | + | chr5_3:5715756-5715775 | Msa0793900:CDS | 45.0% |
| GGCATGAACAGCATCTACAA+TGG | - | chr5_3:5715786-5715805 | None:intergenic | 45.0% | |
| GTAGATGCTGTTCATGCCAA+AGG | + | chr5_3:5715788-5715807 | Msa0793900:CDS | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | - | chr5_3:5716150-5716169 | None:intergenic | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | + | chr5_3:5716150-5716169 | Msa0793900:intron | 45.0% | |
| ! | GTCATACAATTTGGGACGGA+GGG | + | chr5_3:5716545-5716564 | Msa0793900:intron | 45.0% |
| ! | GATATTGGTGCTTGCCCATT+TGG | - | chr5_3:5716675-5716694 | None:intergenic | 45.0% |
| CTACTCACACCACAAATTGG+AGG | + | chr5_3:5716708-5716727 | Msa0793900:CDS | 45.0% | |
| ACACCACAAATTGGAGGTGA+TGG | + | chr5_3:5716714-5716733 | Msa0793900:CDS | 45.0% | |
| GTACCATCACCTCCAATTTG+TGG | - | chr5_3:5716720-5716739 | None:intergenic | 45.0% | |
| TCTTCTGTTCTTAGCCTCCT+TGG | - | chr5_3:5716765-5716784 | None:intergenic | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5_3:5712721-5712740 | Msa0793900:CDS | 45.0% | |
| GAGATAGGTGCAGAAAGAGT+TGG | + | chr5_3:5717204-5717223 | Msa0793900:CDS | 45.0% | |
| ! | TCATATGGTGGAGCCATGAA+TGG | + | chr5_3:5717335-5717354 | Msa0793900:exon | 45.0% |
| TAGCTTGGCACCAATGAGAA+AGG | + | chr5_3:5717389-5717408 | Msa0793900:three_prime_UTR | 45.0% | |
| GATTCAGTCAAAATAGGGGG+GGG | - | chr5_3:5718738-5718757 | None:intergenic | 45.0% | |
| CGATTCAGTCAAAATAGGGG+GGG | - | chr5_3:5718737-5718756 | None:intergenic | 45.0% | |
| CCGATTCAGTCAAAATAGGG+GGG | - | chr5_3:5718736-5718755 | None:intergenic | 45.0% | |
| !!! | CCCCCCTATTTTGACTGAAT+CGG | + | chr5_3:5717727-5717746 | Msa0793900:intron | 45.0% |
| AAACATTAAATTGGGGGGGG+GGG | + | chr5_3:5718604-5718623 | Msa0793900:intron | 45.0% | |
| !!! | CCCCCCTATTTTGACTGAAT+CGG | - | chr5_3:5717727-5717746 | None:intergenic | 45.0% |
| CCGATTCAGTCAAAATAGGG+GGG | + | chr5_3:5718736-5718755 | Msa0793900:intron | 45.0% | |
| CGATTCAGTCAAAATAGGGG+GGG | + | chr5_3:5718737-5718756 | Msa0793900:intron | 45.0% | |
| ! | ATATCCCGGAACACCGATTA+AGG | + | chr5_3:5718947-5718966 | Msa0793900:three_prime_UTR | 45.0% |
| !! | ATAAAAATAAAATTTAGATT+AGG | + | chr5_3:5711947-5711966 | Msa0793900:intron | 5.0% |
| CAAGGCTATCCAAACACACC+AGG | + | chr5_3:5711555-5711574 | Msa0793900:CDS | 50.0% | |
| ! | CTAAAGAGCATGTTGAGGCG+TGG | + | chr5_3:5711586-5711605 | Msa0793900:CDS | 50.0% |
| GATGCGGTTCATGACAAAGG+CGG | + | chr5_3:5711621-5711640 | Msa0793900:CDS | 50.0% | |
| CTATCTGTGCCTACACCGAT+TGG | + | chr5_3:5712013-5712032 | Msa0793900:intron | 50.0% | |
| TCACGAAACCGAGACGACTA+AGG | + | chr5_3:5712466-5712485 | Msa0793900:CDS | 50.0% | |
| CTCATTGGCACCAGACTGTA+AGG | - | chr5_3:5713042-5713061 | None:intergenic | 50.0% | |
| ! | CAGTCTGGTGCCAATGAGAA+AGG | + | chr5_3:5713044-5713063 | Msa0793900:CDS | 50.0% |
| GGTACTTTCATGGTTGCAGG+AGG | + | chr5_3:5713075-5713094 | Msa0793900:intron | 50.0% | |
| GGAGGCTATGACAGACAAGA+TGG | + | chr5_3:5713093-5713112 | Msa0793900:intron | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | + | chr5_3:5713312-5713331 | Msa0793900:intron | 50.0% | |
| AGCAGTGTTCAGTTTAGGGG+AGG | - | chr5_3:5713731-5713750 | None:intergenic | 50.0% | |
| ! | TCTCTAGCCAGCTTGCTTTC+TGG | + | chr5_3:5714435-5714454 | Msa0793900:intron | 50.0% |
| ! | CTCTAGCCAGCTTGCTTTCT+GGG | + | chr5_3:5714436-5714455 | Msa0793900:intron | 50.0% |
| ! | TCTAGCCAGCTTGCTTTCTG+GGG | + | chr5_3:5714437-5714456 | Msa0793900:intron | 50.0% |
| TATTGCCCCAGAAAGCAAGC+TGG | - | chr5_3:5714445-5714464 | None:intergenic | 50.0% | |
| ! | GGAGGGATGAGGTACTTTCT+AGG | - | chr5_3:5714576-5714595 | None:intergenic | 50.0% |
| ! | TGACTGACTTTGGAGGGATG+AGG | - | chr5_3:5714587-5714606 | None:intergenic | 50.0% |
| TAGAGGACAGCATGAGGTTG+AGG | - | chr5_3:5715638-5715657 | None:intergenic | 50.0% | |
| GTCCATATACCTGGTGTGTC+TGG | - | chr5_3:5715737-5715756 | None:intergenic | 50.0% | |
| AGGCCACGTGTCCCAAAAAA+GGG | + | chr5_3:5715985-5716004 | Msa0793900:intron | 50.0% | |
| ! | CGTCATACAATTTGGGACGG+AGG | + | chr5_3:5716544-5716563 | Msa0793900:intron | 50.0% |
| TGCCACAATTCACACCACCA+AGG | + | chr5_3:5716745-5716764 | Msa0793900:CDS | 50.0% | |
| !! | CTCCTTGGTGGTGTGAATTG+TGG | - | chr5_3:5716750-5716769 | None:intergenic | 50.0% |
| CACAATTCACACCACCAAGG+AGG | + | chr5_3:5716748-5716767 | Msa0793900:CDS | 50.0% | |
| TCTGTTCTTAGCCTCCTTGG+TGG | - | chr5_3:5716762-5716781 | None:intergenic | 50.0% | |
| GATCCATGAGGTAGCATCCA+AGG | + | chr5_3:5717637-5717656 | Msa0793900:three_prime_UTR | 50.0% | |
| TCACCTTGGATGCTACCTCA+TGG | - | chr5_3:5717643-5717662 | None:intergenic | 50.0% | |
| AACATTAAATTGGGGGGGGG+GGG | + | chr5_3:5718605-5718624 | Msa0793900:intron | 50.0% | |
| ! | GCTTCCTTAATCGGTGTTCC+GGG | - | chr5_3:5718954-5718973 | None:intergenic | 50.0% |
| ! | GGCTTCCTTAATCGGTGTTC+CGG | - | chr5_3:5718955-5718974 | None:intergenic | 50.0% |
| !! | TTCGTCATTACGAAGGTGCC+TGG | - | chr5_3:5719105-5719124 | None:intergenic | 50.0% |
| GGTGTCTCTGACACTGCTCA+AGG | + | chr5_3:5711537-5711556 | Msa0793900:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5_3:5712732-5712751 | None:intergenic | 55.0% | |
| GGAGGTTCCACTTCCAACCT+TGG | - | chr5_3:5713322-5713341 | None:intergenic | 55.0% | |
| GGTGTCTCTGACACTGCTCA+AGG | + | chr5_3:5711537-5711556 | Msa0793900:CDS | 55.0% | |
| CAAGGCTATCCAGACACACC+AGG | + | chr5_3:5715725-5715744 | Msa0793900:CDS | 55.0% | |
| GAGGCCACGTGTCCCAAAAA+AGG | + | chr5_3:5715984-5716003 | Msa0793900:intron | 55.0% | |
| GGCCACGTGTCCCAAAAAAG+GGG | + | chr5_3:5715986-5716005 | Msa0793900:intron | 55.0% | |
| !!! | TGCCCCTTTTTTGGGACACG+TGG | - | chr5_3:5715991-5716010 | None:intergenic | 55.0% |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5_3:5712732-5712751 | None:intergenic | 55.0% | |
| ACATTAAATTGGGGGGGGGG+GGG | + | chr5_3:5718606-5718625 | Msa0793900:intron | 55.0% | |
| CATTAAATTGGGGGGGGGGG+GGG | + | chr5_3:5718607-5718626 | Msa0793900:intron | 60.0% | |
| ATTAAATTGGGGGGGGGGGG+GGG | + | chr5_3:5718608-5718627 | Msa0793900:intron | 60.0% | |
| TTAAATTGGGGGGGGGGGGG+GGG | + | chr5_3:5718609-5718628 | Msa0793900:intron | 65.0% | |
| TAAATTGGGGGGGGGGGGGG+GGG | + | chr5_3:5718610-5718629 | Msa0793900:intron | 70.0% | |
| AAATTGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718611-5718630 | Msa0793900:intron | 75.0% | |
| ! | AATTGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718612-5718631 | Msa0793900:intron | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718613-5718632 | Msa0793900:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718614-5718633 | Msa0793900:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:5718615-5718634 | Msa0793900:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5711250 | 5719264 | 5711250 | ID=Msa0793900;Name=Msa0793900 |
| chr5_3 | mRNA | 5711250 | 5719264 | 5711250 | ID=Msa0793900-mRNA-1;Parent=Msa0793900;Name=Msa0793900-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.3|0.27|1|0.6|0.45|11|693|572 |
| chr5_3 | exon | 5711250 | 5711338 | 5711250 | ID=Msa0793900-mRNA-1:exon:2288;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5711419 | 5711642 | 5711419 | ID=Msa0793900-mRNA-1:exon:2289;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5712394 | 5712552 | 5712394 | ID=Msa0793900-mRNA-1:exon:2290;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5712710 | 5712954 | 5712710 | ID=Msa0793900-mRNA-1:exon:2291;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5712973 | 5713075 | 5712973 | ID=Msa0793900-mRNA-1:exon:2292;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5713094 | 5713264 | 5713094 | ID=Msa0793900-mRNA-1:exon:2293;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5715430 | 5715499 | 5715430 | ID=Msa0793900-mRNA-1:exon:2294;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5715589 | 5715809 | 5715589 | ID=Msa0793900-mRNA-1:exon:2295;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5716703 | 5716840 | 5716703 | ID=Msa0793900-mRNA-1:exon:2296;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5717055 | 5717683 | 5717055 | ID=Msa0793900-mRNA-1:exon:2297;Parent=Msa0793900-mRNA-1 |
| chr5_3 | exon | 5718902 | 5719264 | 5718902 | ID=Msa0793900-mRNA-1:exon:2298;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5711250 | 5711338 | 5711250 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5711419 | 5711642 | 5711419 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5712394 | 5712552 | 5712394 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5712710 | 5712954 | 5712710 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5712973 | 5713075 | 5712973 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5713094 | 5713264 | 5713094 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5715430 | 5715499 | 5715430 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5715589 | 5715809 | 5715589 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5716703 | 5716840 | 5716703 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | CDS | 5717055 | 5717353 | 5717055 | ID=Msa0793900-mRNA-1:cds;Parent=Msa0793900-mRNA-1 |
| chr5_3 | three_prime_UTR | 5717354 | 5717683 | 5717354 | ID=Msa0793900-mRNA-1:three_prime_utr;Parent=Msa0793900-mRNA-1 |
| chr5_3 | three_prime_UTR | 5718902 | 5719264 | 5718902 | ID=Msa0793900-mRNA-1:three_prime_utr;Parent=Msa0793900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
