AlfalfaGEDB | Msa0798130

M. sativa cultivar zhongmu-4 / Msa0798130

KEGG: K06111
GO: GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561
PFAM: PF04048.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798130	XP_003611769.2	97.191	1068	25	1	1	1068	1	1063	0.0	2149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798130	sp\|Q93YU5\|SEC8_ARATH	72.082	1071	276	11	1	1067	1	1052	0.0	1491

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798130	G7K802	97.191	1068	25	1	1	1068	1	1063	0.0	2149

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0295830	Msa0798130	0.812986	3.216909e-51	-8.615850e-47
Msa0715190	Msa0798130	0.891945	2.498033e-74	-8.615850e-47
Msa0757330	Msa0798130	0.989006	2.644747e-176	-8.615850e-47
Msa0798130	Msa1123310	0.802280	6.045533e-49	-8.615850e-47
Msa0798130	Msa1191470	0.820974	5.163806e-53	-8.615850e-47
Msa0798130	Msa1227860	0.810102	1.362242e-50	-8.615850e-47
Msa0798130	Msa1270960	0.809710	1.654070e-50	-8.615850e-47
Msa0798130	Msa1308080	0.800993	1.110312e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798130	MtrunA17_Chr5g0402411	97.191	1068	25	1	1	1068	1	1063	0.0	2149
Msa0798130	MtrunA17_Chr8g0391421	96.442	1068	38	0	1	1068	1	1068	0.0	2146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798130	AT3G10380.1	72.082	1071	276	11	1	1067	1	1052	0.0	1491
Msa0798130	AT3G10380.2	72.259	1049	268	11	1	1045	1	1030	0.0	1462

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Find 277 sgRNAs with CRISPR-Local

Find 1252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACACAAATTTCGAAT+CGG	0.508896	5_3:+10732108	Msa0798130:five_prime_UTR
AAAACTATTCCCAGATCTTG+AGG	0.545672	5_3:+10732955	Msa0798130:CDS
AAAAGCAACACCTGAAGCAC+AGG	0.543061	5_3:-10740372	None:intergenic
AAAAGTTTGAACACACTACA+AGG	0.570154	5_3:-10750962	None:intergenic
AAAATGAGAGAGAACTATTC+TGG	0.297899	5_3:-10732045	None:intergenic
AAACACTATTGCATTGGAAC+AGG	0.458483	5_3:+10749680	Msa0798130:CDS
AAACTTGCGTCCTATTAAGC+AGG	0.512784	5_3:+10745112	Msa0798130:CDS
AAATAAGTTTATTGTCATCG+TGG	0.591799	5_3:-10745335	None:intergenic
AAATATGATGATGACAATTT+TGG	0.219195	5_3:+10751190	Msa0798130:three_prime_UTR
AAATGTTCTGGTCCCTGGGA+GGG	0.565194	5_3:+10750897	Msa0798130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAGAGAGAACTATTC+TGG	-	chr5_3:10732048-10732067	None:intergenic	30.0%
CATCAGAATTCATTCTTAAG+AGG	-	chr5_3:10732277-10732296	None:intergenic	30.0%
GCAGTTATATCTTCATTTCA+TGG	+	chr5_3:10732328-10732347	Msa0798130:intron	30.0%
ACATTGAAGAAGTCTCATTA+TGG	+	chr5_3:10732364-10732383	Msa0798130:exon	30.0%
CATTGAAGAAGTCTCATTAT+GGG	+	chr5_3:10732365-10732384	Msa0798130:exon	30.0%
GTCAAAATATGAACAACATG+AGG	-	chr5_3:10732822-10732841	None:intergenic	30.0%
CACTTTGCTCTTTCAAATAT+TGG	-	chr5_3:10732869-10732888	None:intergenic	30.0%
GTTGTACAATCTTATCATAG+TGG	+	chr5_3:10732915-10732934	Msa0798130:CDS	30.0%
ATTGATGCAATTGCTTATTG+CGG	-	chr5_3:10733055-10733074	None:intergenic	30.0%
TACGTGTTGTATTTGTTCTT+TGG	+	chr5_3:10733314-10733333	Msa0798130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	10732027	10751343	10732027	ID=Msa0798130;Name=Msa0798130
chr5_3	mRNA	10732027	10751343	10732027	ID=Msa0798130-mRNA-1;Parent=Msa0798130;Name=Msa0798130-mRNA-1;_AED=0.13;_eAED=0.13;_QI=209\|1\|1\|1\|0.95\|0.96\|25\|374\|1068
chr5_3	exon	10732027	10732184	10732027	ID=Msa0798130-mRNA-1:exon:4442;Parent=Msa0798130-mRNA-1
chr5_3	exon	10732332	10732424	10732332	ID=Msa0798130-mRNA-1:exon:4443;Parent=Msa0798130-mRNA-1
chr5_3	exon	10732756	10733244	10732756	ID=Msa0798130-mRNA-1:exon:4444;Parent=Msa0798130-mRNA-1
chr5_3	exon	10733798	10733907	10733798	ID=Msa0798130-mRNA-1:exon:4445;Parent=Msa0798130-mRNA-1
chr5_3	exon	10734284	10734457	10734284	ID=Msa0798130-mRNA-1:exon:4446;Parent=Msa0798130-mRNA-1
chr5_3	exon	10735608	10735779	10735608	ID=Msa0798130-mRNA-1:exon:4447;Parent=Msa0798130-mRNA-1
chr5_3	exon	10735881	10735987	10735881	ID=Msa0798130-mRNA-1:exon:4448;Parent=Msa0798130-mRNA-1
chr5_3	exon	10736712	10737019	10736712	ID=Msa0798130-mRNA-1:exon:4449;Parent=Msa0798130-mRNA-1
chr5_3	exon	10737758	10737921	10737758	ID=Msa0798130-mRNA-1:exon:4450;Parent=Msa0798130-mRNA-1
chr5_3	exon	10738461	10738576	10738461	ID=Msa0798130-mRNA-1:exon:4451;Parent=Msa0798130-mRNA-1
chr5_3	exon	10739279	10739349	10739279	ID=Msa0798130-mRNA-1:exon:4452;Parent=Msa0798130-mRNA-1
chr5_3	exon	10740253	10740383	10740253	ID=Msa0798130-mRNA-1:exon:4453;Parent=Msa0798130-mRNA-1
chr5_3	exon	10740472	10740521	10740472	ID=Msa0798130-mRNA-1:exon:4454;Parent=Msa0798130-mRNA-1
chr5_3	exon	10742459	10742559	10742459	ID=Msa0798130-mRNA-1:exon:4455;Parent=Msa0798130-mRNA-1
chr5_3	exon	10743458	10743570	10743458	ID=Msa0798130-mRNA-1:exon:4456;Parent=Msa0798130-mRNA-1
chr5_3	exon	10743789	10743896	10743789	ID=Msa0798130-mRNA-1:exon:4457;Parent=Msa0798130-mRNA-1
chr5_3	exon	10744936	10745133	10744936	ID=Msa0798130-mRNA-1:exon:4458;Parent=Msa0798130-mRNA-1
chr5_3	exon	10745324	10745409	10745324	ID=Msa0798130-mRNA-1:exon:4459;Parent=Msa0798130-mRNA-1
chr5_3	exon	10747237	10747414	10747237	ID=Msa0798130-mRNA-1:exon:4460;Parent=Msa0798130-mRNA-1
chr5_3	exon	10747499	10747576	10747499	ID=Msa0798130-mRNA-1:exon:4461;Parent=Msa0798130-mRNA-1
chr5_3	exon	10749408	10749509	10749408	ID=Msa0798130-mRNA-1:exon:4462;Parent=Msa0798130-mRNA-1
chr5_3	exon	10749627	10749701	10749627	ID=Msa0798130-mRNA-1:exon:4463;Parent=Msa0798130-mRNA-1
chr5_3	exon	10750578	10750673	10750578	ID=Msa0798130-mRNA-1:exon:4464;Parent=Msa0798130-mRNA-1
chr5_3	exon	10750762	10750811	10750762	ID=Msa0798130-mRNA-1:exon:4465;Parent=Msa0798130-mRNA-1
chr5_3	exon	10750882	10751343	10750882	ID=Msa0798130-mRNA-1:exon:4466;Parent=Msa0798130-mRNA-1
chr5_3	five_prime_UTR	10732027	10732184	10732027	ID=Msa0798130-mRNA-1:five_prime_utr;Parent=Msa0798130-mRNA-1
chr5_3	five_prime_UTR	10732332	10732382	10732332	ID=Msa0798130-mRNA-1:five_prime_utr;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10732383	10732424	10732383	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10732756	10733244	10732756	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10733798	10733907	10733798	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10734284	10734457	10734284	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10735608	10735779	10735608	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10735881	10735987	10735881	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10736712	10737019	10736712	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10737758	10737921	10737758	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10738461	10738576	10738461	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10739279	10739349	10739279	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10740253	10740383	10740253	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10740472	10740521	10740472	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10742459	10742559	10742459	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10743458	10743570	10743458	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10743789	10743896	10743789	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10744936	10745133	10744936	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10745324	10745409	10745324	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10747237	10747414	10747237	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10747499	10747576	10747499	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10749408	10749509	10749408	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10749627	10749701	10749627	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10750578	10750673	10750578	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10750762	10750811	10750762	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	CDS	10750882	10750969	10750882	ID=Msa0798130-mRNA-1:cds;Parent=Msa0798130-mRNA-1
chr5_3	three_prime_UTR	10750970	10751343	10750970	ID=Msa0798130-mRNA-1:three_prime_utr;Parent=Msa0798130-mRNA-1

Gene Sequence

>Msa0798130

ATGGGAGTTTTTGATGACTTACCTTTGCCTCCAGAAAAATCTTATCTGAGAGAAGAACTTTCTAGGATAGACGAGACTTGGACTGTTGCTCGTTTTGATTCGTTACCTCATGTTGTTCATATTTTGACATCAAAAGATCGTGATGCTGCTGCCCAATATTTGAAAGAGCAAAGTGATGTTGTTGAGGAGGTTGTCGATGAAGTTGTACAATCTTATCATAGTGGTTTCAACAGAGCTATCCAAAACTATTCCCAGATCTTGAGGCTTTTTAGTGAATCCACTGAAAGTATAGGCGTCTTAAAGGTAGATTTGGCAGAGGCTAAGAAGCACCTTAGTTCCCGCAATAAGCAATTGCATCAATTATGGTATCGATCAGTCACATTACGACACATAATCTCCTTATTGGATCAAATCGAAGACATTGCTAAGGTTCCAGCTCGTATTGAGAAACTCATTGCAGAGAAGCAATATTATGCTGCAGTTCAATTGCATGTGCAATCCATTATGATGCTTGAGCGAGGTCTCCAAACTGTTGGGGCACTCCAAGATGTCCGTTCTGATTTAACAAAGTTGCGTGGAGTTCTCTTTTATAAGATTTTGGAGGATTTACATGCACATTTATACAACAAAGGTGAATATAGTGCTTCAGGCTCAACTATGCTGGAGAACGACGACGACGTTCCCACCACCATTTCTGTTGGACTTACTGCGCATAATTCACAACCTCTGTCTCGAAGAACAAAGTCATTCAAAGGCGACAATCAAAATGGCCTCCAGATTGATGGATCATATAGGCCCGGACCTGTGGACAGAGGTTCTTTTGATGGCAATGATGAGGAAGGCGCTTTGGTTTCAAGTGAAGAAGCTACTTTAGATGGGGATATGGAAAACATGAGAATCAATGGTAGTGGTGTCACAAAGGATGCCAGTGGTGCTCTTCGTCAAATGCCAACATGGCTTTCGAATTCGACACCTGATGAATTTCTTGAAACAATTAGAAAGAGTGATGCTCCACTTTATGTGAAGTATCTTCAGACCATGGTTGAGTGTCTGTGTATGCTTGGAAAAGTGTCAGCTGCTGGTGCTATGATTTGCCAAAGATTACGACCAACAATTCATGAAATTATTTCATCCAAGATTAAAGCCCATGCAGACCTTTTGAATTCATCAAGGTCTAGCATTGGTCATGGTTCCCGAACTGGAACAGGTGATCTACACTTCATTAAAGGTCAACTGGAAAGCTACCAGTTGCCAAAACAGAAGCGTAAGAATGGGATATCTATTGCTGGGACTCTGTTGGCTGTAAGCCCTGTTTCCCCTCTCATGGCTCCTGGTGGGAAAGCACAAATTGCTGCGAAGGAGCTTCTTGATTCAATTTTGGATGCTGTTGTTCGAATATTTGAGAACCATGTTGTTGTTGGGGAGCTGTTGGAAGCAAAAGTCAGTCAGCATGTTGATATGAACACACCAAAATCTGTGCCAGTGGATGTGAGTTGGAATCCTGATTCTGAAACATCTCAAGTCACAGGAGGTTACAGCATAAGTTTCTCCTTGACAGTGTTACAGAGTGAATGCCAACAACTTATATGTGAAATTCTGCGGGCGACTCCAGAAGCTGCATCTGCTGATGCCGCTGTGCAAACAGCCAGACTTGCAAGCAAAGTCCCTTCGAAAGAGAAAAGGGATGAATCAGAAAATGGTCTTACCTTTGCATTTCGCTTTACTGATGCTACAATATCTGTTCCTAATCAGGGAGTTGATCTTGTTCGCCAAGGATGGAATAGGAAGGGTCCCAATGTGGTGCAGGAGGGTTATGGGTCTGCAGCGGTTTTACCTGAGGAGGGCATATATTTAGCAGCATCAATATACCGACCTGTGCTTCAGTTCACAGATAAAGTTGCTTCAATGCTGCCAACAAAGTATTCCCAACTTAGCAATGATGGGTTGCTAGCTTTTGTGGAGAACTTTGTAAAGGACCACTTTTTACCAACTATGTTTGTGGATTACCGAAAAGGCGTACAGCAAGCCATATCAAGTCCGGCTGCATTTCGTCCAAGAGCACATGTGGTCAGTACTTATACCTCGTCAATTGAAAAGGGCCGGCCTGTATTACAAGGATTATTGGCTATTGATTACTTGACAAAAGAGGTGCTTGGCTGGGCTCAAGCAATGCCCAAATTTGCTAATGATCTTGTGAAGTATGTGCAAACTTTTCTGGAGAGGACTTATGAAAGATGCCGGACTTCATACATGGAGGCTGTTCTTGAAAAGCAGAGTTACATGCTTATTGGGAGGCATGATATTGAGAAATTGATGAGGCTTGACCCCTCAAGTGGGTATTTACCAAATCTGCAAGGACCTTTTAATTTGGAAAGCAATTCCTATGACGCCGAAACAATTGAGGCTGAACTGGAGCTAAGTGAATTATTGCTAAACTTGCGTCCTATTAAGCAGGAAAACCTAATCCACGATGACAATAAACTTATTTTGTTGGCATCCCTTAGTGACTCACTGGAGTATGTTGCAGACTCCGTTGAAAGGCTTGGACAGACTACTCAAAGAGCAACAAATCATGTTGAAGGAAAGCATCATAGTCATTCAGACAGCACACCTACAAGGAGTCTGGCATCATTTGCTCAAGATTATAGAAAATTGGCAATTGACTGCCTGAAGGTTTTACGCATAGAAATGCAATTGGAGACAATATTTCATATGCAGGAAATGACAAATACAGAATACTTGGATGACCAAGATGCTGAAGAACCAGATGACTTCATCATTTCTCTCACTGCACAGATAACCCGAAGAGATGAGGAAATGGCTCCTTTTATTTCAAATGCAAAGCGGAATTACATATTTGGTGGAATTTGTGGAGTTGCAGCAAATGCATCTATTAAGGCTTTGGCGGATATGAAGTCTATTAATCTTTTTGGTGTTCAGCAAATATGTCGAAACACTATTGCATTGGAACAGGCATTGGCTGCTATTCCATCCATAAACAGTGAAATTGTGCAACAAAGATTGGATCGAGTCCGCACCTACTATGAACTCTTAAACATGCCATTTGAGGCCTTGCTTGCCTTCATTACAGAACATGCACATTTGTTTACTGCTGCAGAGTACGCCAAACTTCTAAATGTTCTGGTCCCTGGGAGGGAGATTCCTCCTGACGCACATGACCGAGTGTCTGAAATATTATCCTTGTAG

Protein sequence

>Msa0798130

MGVFDDLPLPPEKSYLREELSRIDETWTVARFDSLPHVVHILTSKDRDAAAQYLKEQSDVVEEVVDEVVQSYHSGFNRAIQNYSQILRLFSESTESIGVLKVDLAEAKKHLSSRNKQLHQLWYRSVTLRHIISLLDQIEDIAKVPARIEKLIAEKQYYAAVQLHVQSIMMLERGLQTVGALQDVRSDLTKLRGVLFYKILEDLHAHLYNKGEYSASGSTMLENDDDVPTTISVGLTAHNSQPLSRRTKSFKGDNQNGLQIDGSYRPGPVDRGSFDGNDEEGALVSSEEATLDGDMENMRINGSGVTKDASGALRQMPTWLSNSTPDEFLETIRKSDAPLYVKYLQTMVECLCMLGKVSAAGAMICQRLRPTIHEIISSKIKAHADLLNSSRSSIGHGSRTGTGDLHFIKGQLESYQLPKQKRKNGISIAGTLLAVSPVSPLMAPGGKAQIAAKELLDSILDAVVRIFENHVVVGELLEAKVSQHVDMNTPKSVPVDVSWNPDSETSQVTGGYSISFSLTVLQSECQQLICEILRATPEAASADAAVQTARLASKVPSKEKRDESENGLTFAFRFTDATISVPNQGVDLVRQGWNRKGPNVVQEGYGSAAVLPEEGIYLAASIYRPVLQFTDKVASMLPTKYSQLSNDGLLAFVENFVKDHFLPTMFVDYRKGVQQAISSPAAFRPRAHVVSTYTSSIEKGRPVLQGLLAIDYLTKEVLGWAQAMPKFANDLVKYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIEKLMRLDPSSGYLPNLQGPFNLESNSYDAETIEAELELSELLLNLRPIKQENLIHDDNKLILLASLSDSLEYVADSVERLGQTTQRATNHVEGKHHSHSDSTPTRSLASFAQDYRKLAIDCLKVLRIEMQLETIFHMQEMTNTEYLDDQDAEEPDDFIISLTAQITRRDEEMAPFISNAKRNYIFGGICGVAANASIKALADMKSINLFGVQQICRNTIALEQALAAIPSINSEIVQQRLDRVRTYYELLNMPFEALLAFITEHAHLFTAAEYAKLLNVLVPGREIPPDAHDRVSEILSL*