AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799540 MtrunA17_Chr5g0404981 91.582 392 19 5 1 380 1 390 0.0 618
Msa0799540 MtrunA17_Chr8g0372291 50.000 326 112 9 52 362 1 290 8.13e-86 262
Msa0799540 MtrunA17_Chr4g0035891 40.688 349 127 10 55 380 5 296 5.47e-62 201
Msa0799540 MtrunA17_Chr3g0145121 40.373 322 137 10 55 361 5 286 3.30e-55 183
Msa0799540 MtrunA17_Chr3g0140331 38.966 290 130 8 85 360 67 323 9.02e-43 152
Msa0799540 MtrunA17_Chr1g0146231 43.612 227 97 7 144 360 99 304 1.42e-42 152
Msa0799540 MtrunA17_Chr8g0340401 41.810 232 83 6 142 359 102 295 1.33e-41 149
Msa0799540 MtrunA17_Chr1g0199671 38.306 248 104 9 148 356 71 308 1.03e-38 141
Msa0799540 MtrunA17_Chr1g0213161 41.150 226 104 6 150 358 9 222 1.55e-35 130
Msa0799540 MtrunA17_Chr7g0253101 41.284 218 100 6 155 354 45 252 4.77e-34 127
Msa0799540 MtrunA17_Chr6g0461591 36.820 239 95 8 155 354 35 256 1.06e-32 123
Msa0799540 MtrunA17_Chr1g0169431 71.233 73 21 0 290 362 172 244 1.81e-32 122
Msa0799540 MtrunA17_Chr4g0028961 68.421 76 22 1 289 362 231 306 3.25e-31 120
Msa0799540 MtrunA17_Chr2g0326771 57.447 94 40 0 261 354 187 280 7.56e-30 117
Msa0799540 MtrunA17_Chr5g0395391 67.123 73 24 0 290 362 270 342 1.64e-29 116
Msa0799540 MtrunA17_Chr5g0395391 68.750 64 20 0 290 353 168 231 9.80e-26 106
Msa0799540 MtrunA17_Chr7g0232671 46.341 82 44 0 270 351 167 248 1.45e-20 90.1
Msa0799540 MtrunA17_Chr7g0232701 54.839 62 28 0 290 351 73 134 2.38e-18 80.9
Msa0799540 MtrunA17_Chr7g0232681 53.226 62 29 0 290 351 132 193 7.11e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799540 AT5G66320.2 43.895 344 167 6 56 380 3 339 1.89e-71 227
Msa0799540 AT5G66320.1 43.895 344 167 6 56 380 3 339 1.89e-71 227
Msa0799540 AT3G51080.1 48.830 342 132 14 52 380 1 312 7.57e-68 217
Msa0799540 AT4G36240.1 44.404 277 91 9 89 357 10 231 2.38e-54 179
Msa0799540 AT4G32890.1 36.972 284 134 9 88 359 16 266 9.88e-46 159
Msa0799540 AT5G25830.1 39.510 286 148 10 89 359 13 288 1.86e-45 159
Msa0799540 AT4G34680.1 38.487 304 122 8 58 359 9 249 5.68e-41 145
Msa0799540 AT4G34680.2 38.487 304 122 8 58 359 9 249 5.68e-41 145
Msa0799540 AT3G60530.1 42.396 217 71 6 142 358 64 226 3.64e-39 140
Msa0799540 AT2G45050.1 40.254 236 70 8 143 360 67 249 1.07e-38 139
Msa0799540 AT3G24050.1 70.667 75 19 1 282 356 189 260 2.83e-33 125
Msa0799540 AT3G54810.1 74.286 70 18 0 288 357 227 296 1.15e-31 122
Msa0799540 AT3G54810.2 74.286 70 18 0 288 357 227 296 1.15e-31 122
Msa0799540 AT1G08010.2 72.464 69 19 0 290 358 220 288 3.95e-31 120
Msa0799540 AT1G08010.1 72.464 69 19 0 290 358 220 288 3.95e-31 120
Msa0799540 AT1G08010.3 72.464 69 19 0 290 358 220 288 3.95e-31 120
Msa0799540 AT1G08000.2 59.770 87 28 1 290 376 218 297 7.61e-29 114
Msa0799540 AT1G08000.1 59.770 87 28 1 290 376 218 297 7.61e-29 114
Msa0799540 AT3G45170.1 67.164 67 22 0 292 358 117 183 8.17e-29 111
Msa0799540 AT2G28340.1 66.154 65 22 0 292 356 193 257 2.60e-25 104
Msa0799540 AT2G18380.1 59.091 44 16 1 279 322 83 124 7.37e-11 61.6

Find 113 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGTTGAAAACCAGTTTA+AGG 0.224198 5_3:+12802339 Msa0799540:CDS
AGTGTTCTTGTTCTTCTTCT+TGG 0.233910 5_3:-12802484 None:intergenic
AAGAAAAGAAAAGGTAAATT+AGG 0.245805 5_3:+12801975 Msa0799540:five_prime_UTR
GCCGCATTTCAAGCACTTTC+CGG 0.262078 5_3:-12803361 None:intergenic
TGTTAGGGTTTGAAGTTTCA+TGG 0.286423 5_3:-12802532 None:intergenic
TCAAGGTGGTGCGCTGGTTA+TGG 0.302812 5_3:+12803154 Msa0799540:CDS
TGCGGTAGGTTAGGTTAATT+AGG 0.304925 5_3:+12803605 Msa0799540:three_prime_UTR
TTGAGAGAGAGAGTGGTGTT+AGG 0.311796 5_3:-12802548 None:intergenic
AGAGAAGAGGATAGGAAGTT+TGG 0.315573 5_3:-12802079 None:intergenic
AGTTATGTCTTTCCTTAAAC+TGG 0.323165 5_3:-12802351 None:intergenic
GAGTGATGATGTAGCGGATT+TGG 0.332967 5_3:+12802764 Msa0799540:intron
TCAGTCCTCAATGCACAAAA+TGG 0.339657 5_3:+12802398 Msa0799540:CDS
TGAGAGAGAGAGTGGTGTTA+GGG 0.347258 5_3:-12802547 None:intergenic
GGTGTTAGGGTTTGGCCATT+CGG 0.355747 5_3:+12802972 Msa0799540:CDS
AAAGAGCCAGAACCGGTGTT+AGG 0.359270 5_3:+12802958 Msa0799540:CDS
CCAAACCCTAACACCGGTTC+TGG 0.366801 5_3:-12802964 None:intergenic
GTTGAAATTGAAGTTGAAAC+TGG 0.368767 5_3:+12803407 Msa0799540:CDS
GTGTTAGGGTTTGGCCATTC+GGG 0.373119 5_3:+12802973 Msa0799540:CDS
CTTCTAGCTTTGGTCTGAAC+CGG 0.375743 5_3:-12802933 None:intergenic
GAAGATACTGATTCCTTCTC+TGG 0.390652 5_3:+12802807 Msa0799540:CDS
CCAGAACCGGTGTTAGGGTT+TGG 0.410403 5_3:+12802964 Msa0799540:CDS
ACTAGGAACAACCGGAGAAC+GGG 0.415441 5_3:-12803435 None:intergenic
TGTATTGAGTGCGGTAGGTT+AGG 0.418208 5_3:+12803596 Msa0799540:three_prime_UTR
AACTGGTTTGTCCCGTTCTC+CGG 0.421240 5_3:+12803424 Msa0799540:CDS
TAACTCGGGTCCCATTGAAC+CGG 0.428789 5_3:-12803552 None:intergenic
ATGTGGGGTCCGTTTCAAAT+CGG 0.430277 5_3:+12803268 Msa0799540:CDS
TTTCAAGCACTTTCCGGTGG+TGG 0.445128 5_3:-12803355 None:intergenic
TAGAGAAAGAAGAAAAGAAA+AGG 0.445579 5_3:+12801966 Msa0799540:five_prime_UTR
CATGTTGGTGTAAATCAGTA+AGG 0.448804 5_3:-12803066 None:intergenic
GGGAAGAGAGAGAAAGAAAC+TGG 0.449015 5_3:+12802001 Msa0799540:five_prime_UTR
TGTGGGGTCCGTTTCAAATC+GGG 0.450070 5_3:+12803269 Msa0799540:CDS
AGAAAATACCTTCTTCTAAC+GGG 0.463060 5_3:+12803126 Msa0799540:CDS
AAGAAAAGGTAAATTAGGAG+TGG 0.464774 5_3:+12801980 Msa0799540:five_prime_UTR
TTATAGTAATAATAAATCCT+TGG 0.467588 5_3:+12802028 Msa0799540:five_prime_UTR
ATTTCATCAACAAATGTTTG+AGG 0.469386 5_3:-12802374 None:intergenic
TTTGGTAAAGCATTGAATGA+AGG 0.471624 5_3:-12802061 None:intergenic
TAACCTACCGCACTCAATAC+AGG 0.474709 5_3:-12803594 None:intergenic
CGGAACGTTGAGTTCGTTGG+TGG 0.479405 5_3:-12802591 None:intergenic
TAAATCAGTAAGGGACTAGT+TGG 0.479787 5_3:-12803056 None:intergenic
AGAAGCAAAAGAGCCAGAAC+CGG 0.482571 5_3:+12802951 Msa0799540:CDS
GTCGGGTCAAGGTGGTGCGC+TGG 0.483548 5_3:+12803148 Msa0799540:CDS
CAGTGGAGAAGTGGACCCCT+TGG 0.483789 5_3:+12803224 Msa0799540:CDS
CGGCGGAAGAAGGAGGTTGT+TGG 0.485331 5_3:+12803380 Msa0799540:CDS
TACTGATTCCTTCTCTGGAA+TGG 0.486449 5_3:+12802812 Msa0799540:CDS
GGGACTAGTTGGAGATGAAG+AGG 0.488850 5_3:-12803045 None:intergenic
TCTTCTAACGGGTCGGGTCA+AGG 0.492580 5_3:+12803137 Msa0799540:CDS
TACCGGAACGTTGAGTTCGT+TGG 0.498859 5_3:-12802594 None:intergenic
TTGGTAAAGCATTGAATGAA+GGG 0.499651 5_3:-12802060 None:intergenic
TTATGGCGGCGCCACCGCGA+CGG 0.501029 5_3:+12803171 Msa0799540:CDS
GCTACAAGCGGGTCGATACT+CGG 0.502192 5_3:-12803303 None:intergenic
AAGAGCCAGAACCGGTGTTA+GGG 0.503861 5_3:+12802959 Msa0799540:CDS
GCTTGAAATGCGGCGGAAGA+AGG 0.509175 5_3:+12803370 Msa0799540:CDS
ATACCTTCTTCTAACGGGTC+GGG 0.512415 5_3:+12803131 Msa0799540:CDS
TGTTAAAGCCATTCCAGAGA+AGG 0.512505 5_3:-12802820 None:intergenic
TGCAATTCACTTGAAAATGT+AGG 0.512664 5_3:-12803326 None:intergenic
GCAATTCACTTGAAAATGTA+GGG 0.516502 5_3:-12803325 None:intergenic
CACCAACGAACTCAACGTTC+CGG 0.517043 5_3:+12802592 Msa0799540:CDS
AAGAAAATACCTTCTTCTAA+CGG 0.532786 5_3:+12803125 Msa0799540:CDS
CTTCCTGTATTGAGTGCGGT+AGG 0.532881 5_3:+12803591 Msa0799540:three_prime_UTR
CGGAAGAAGGAGGTTGTTGG+TGG 0.534340 5_3:+12803383 Msa0799540:CDS
TGAAGATGAAGTTGTGGTGG+TGG 0.540481 5_3:-12803021 None:intergenic
CTACAAGCGGGTCGATACTC+GGG 0.540871 5_3:-12803302 None:intergenic
AACTAGGAACAACCGGAGAA+CGG 0.545023 5_3:-12803436 None:intergenic
TTACGTTTGAAATATAAATG+AGG 0.546886 5_3:+12803752 Msa0799540:three_prime_UTR
GTCAAAACTTTGAAGCATGT+TGG 0.552102 5_3:-12803081 None:intergenic
AAGACTCCTCAGTGGAGAAG+TGG 0.555433 5_3:+12803215 Msa0799540:CDS
ACAACCGACCCGATTTGAAA+CGG 0.558005 5_3:-12803277 None:intergenic
AATACCTGTGAGTGAGGATG+AGG 0.559728 5_3:-12802191 None:intergenic
AGAAAAGGTAAATTAGGAGT+GGG 0.561210 5_3:+12801981 Msa0799540:five_prime_UTR
AATACCTTCTTCTAACGGGT+CGG 0.563299 5_3:+12803130 Msa0799540:CDS
AAATTGAAAGAGAAGAGGAT+AGG 0.565462 5_3:-12802087 None:intergenic
TGAAAATGTAGGGCTACAAG+CGG 0.567317 5_3:-12803315 None:intergenic
GGTTGAGCTTGAAGAAGAAT+CGG 0.569217 5_3:-12803000 None:intergenic
AGGTGGTGCGCTGGTTATGG+CGG 0.571286 5_3:+12803157 Msa0799540:CDS
GGATGAAATTGAAAGAGAAG+AGG 0.572683 5_3:-12802092 None:intergenic
TATGGTTGAGAGAGGAATGG+TGG 0.573956 5_3:-12802129 None:intergenic
AAAACACTTTGCAATGCATG+TGG 0.576908 5_3:+12803251 Msa0799540:CDS
ATCTTCTTTGAGAGAGAGAG+TGG 0.577619 5_3:-12802555 None:intergenic
ATGAAGGGTGAAAGCGTCCA+AGG 0.577956 5_3:-12802045 None:intergenic
TGACCCGACCCGTTAGAAGA+AGG 0.580832 5_3:-12803134 None:intergenic
TCTTCCTCATCCTCACTCAC+AGG 0.581283 5_3:+12802187 Msa0799540:CDS
GAAGAATCGGTTGACCCGAA+TGG 0.581552 5_3:-12802987 None:intergenic
AACTCGGGTCCCATTGAACC+GGG 0.583930 5_3:-12803551 None:intergenic
AACACTTTGCAATGCATGTG+GGG 0.584364 5_3:+12803253 Msa0799540:CDS
AGTAATAATACCTGTGAGTG+AGG 0.585394 5_3:-12802197 None:intergenic
AAACACTTTGCAATGCATGT+GGG 0.595953 5_3:+12803252 Msa0799540:CDS
TGGGTTCTTCAAACACAACA+AGG 0.596693 5_3:-12802869 None:intergenic
CCGCGACGGTGCAGTCATTG+TGG 0.597226 5_3:+12803185 Msa0799540:CDS
CAAGCCGAAGCAAGAAAACC+CGG 0.601297 5_3:+12802890 Msa0799540:CDS
GGAACGTTGAGTTCGTTGGT+GGG 0.602465 5_3:-12802590 None:intergenic
AATTGCACTCAAACCACCAC+CGG 0.603688 5_3:+12803342 Msa0799540:CDS
ACCGGAAAGTGCTTGAAATG+CGG 0.610851 5_3:+12803360 Msa0799540:CDS
CAATGACTGCACCGTCGCGG+TGG 0.613617 5_3:-12803182 None:intergenic
GAAAATGTAGGGCTACAAGC+GGG 0.617357 5_3:-12803314 None:intergenic
TGAAATGCGGCGGAAGAAGG+AGG 0.618269 5_3:+12803373 Msa0799540:CDS
ATGATGTAGCGGATTTGGAA+TGG 0.620800 5_3:+12802769 Msa0799540:CDS
TGTACAGAGTGATGATGTAG+CGG 0.627905 5_3:+12802758 Msa0799540:intron
CAACATGAGAGAAGTCAAGA+AGG 0.631100 5_3:-12802451 None:intergenic
GGGTCCGTTTCAAATCGGGT+CGG 0.636088 5_3:+12803273 Msa0799540:CDS
GCATTTCAAGCACTTTCCGG+TGG 0.641487 5_3:-12803358 None:intergenic
ATGTTGGTGTAAATCAGTAA+GGG 0.645408 5_3:-12803065 None:intergenic
TGATATGGTTGAGAGAGGAA+TGG 0.652477 5_3:-12802132 None:intergenic
GAAACTGATATGGTTGAGAG+AGG 0.655208 5_3:-12802137 None:intergenic
GGAAAGTGCTTGAAATGCGG+CGG 0.671374 5_3:+12803363 Msa0799540:CDS
CCACAATGACTGCACCGTCG+CGG 0.674443 5_3:-12803185 None:intergenic
GGTTGAAGATGAAGTTGTGG+TGG 0.679785 5_3:-12803024 None:intergenic
GAATGGCCAAACCCTAACAC+CGG 0.689868 5_3:-12802970 None:intergenic
AGAGGTTGAAGATGAAGTTG+TGG 0.694243 5_3:-12803027 None:intergenic
AATGGCTTTAACAACAACAA+CGG 0.712114 5_3:+12802830 Msa0799540:CDS
TCTAACGGGTCGGGTCAAGG+TGG 0.717376 5_3:+12803140 Msa0799540:CDS
GTGTAACAAAGACTCCTCAG+TGG 0.731260 5_3:+12803207 Msa0799540:CDS
ATGGTGGAAGAAGAATGCAA+AGG 0.739289 5_3:-12802113 None:intergenic
AGGGGTCCACTTCTCCACTG+AGG 0.747563 5_3:-12803221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAAAAATTTGTTAC+CGG - chr5_3:12802614-12802633 None:intergenic 10.0%
!! ATAATAATTAATCAAAAACT+AGG - chr5_3:12803455-12803474 None:intergenic 10.0%
!!! AAAAATAAAAAATTTGTTAC+CGG - chr5_3:12802614-12802633 None:intergenic 10.0%
!! ATAATAATTAATCAAAAACT+AGG - chr5_3:12803455-12803474 None:intergenic 10.0%
!! TTATAGTAATAATAAATCCT+TGG + chr5_3:12802028-12802047 Msa0799540:five_prime_UTR 15.0%
!! AGGTTTATAATAAATATTGT+CGG - chr5_3:12802649-12802668 None:intergenic 15.0%
!!! AAAAAAAATGTTTTTTGTGT+TGG + chr5_3:12802709-12802728 Msa0799540:intron 15.0%
!!! AAAAAAATGTTTTTTGTGTT+GGG + chr5_3:12802710-12802729 Msa0799540:intron 15.0%
!! AAATTTATGAAGAAAAAAAG+AGG + chr5_3:12803485-12803504 Msa0799540:three_prime_UTR 15.0%
!! AGAAAAAAATTAGATAGAAA+TGG + chr5_3:12803512-12803531 Msa0799540:three_prime_UTR 15.0%
!!! GTTATAAAGTTTTTTGAATT+TGG + chr5_3:12803722-12803741 Msa0799540:three_prime_UTR 15.0%
!! TTATAGTAATAATAAATCCT+TGG + chr5_3:12802028-12802047 Msa0799540:five_prime_UTR 15.0%
!! AGGTTTATAATAAATATTGT+CGG - chr5_3:12802649-12802668 None:intergenic 15.0%
!!! AAAAAAAATGTTTTTTGTGT+TGG + chr5_3:12802709-12802728 Msa0799540:intron 15.0%
!!! AAAAAAATGTTTTTTGTGTT+GGG + chr5_3:12802710-12802729 Msa0799540:intron 15.0%
!! AAATTTATGAAGAAAAAAAG+AGG + chr5_3:12803485-12803504 Msa0799540:three_prime_UTR 15.0%
!! AGAAAAAAATTAGATAGAAA+TGG + chr5_3:12803512-12803531 Msa0799540:three_prime_UTR 15.0%
!!! GTTATAAAGTTTTTTGAATT+TGG + chr5_3:12803722-12803741 Msa0799540:three_prime_UTR 15.0%
!! AAGAAAAGAAAAGGTAAATT+AGG + chr5_3:12801975-12801994 Msa0799540:five_prime_UTR 20.0%
!!! TTGTTTTGTTTTGTTTTGTT+AGG + chr5_3:12802286-12802305 Msa0799540:intron 20.0%
!!! ACATAGTTTCGATTTTTTTA+AGG - chr5_3:12802669-12802688 None:intergenic 20.0%
!! AAGAAAAGAAAAGGTAAATT+AGG + chr5_3:12801975-12801994 Msa0799540:five_prime_UTR 20.0%
!!! TTGTTTTGTTTTGTTTTGTT+AGG + chr5_3:12802286-12802305 Msa0799540:intron 20.0%
!!! ACATAGTTTCGATTTTTTTA+AGG - chr5_3:12802669-12802688 None:intergenic 20.0%
! TAGAGAAAGAAGAAAAGAAA+AGG + chr5_3:12801966-12801985 Msa0799540:five_prime_UTR 25.0%
! ATTTCATCAACAAATGTTTG+AGG - chr5_3:12802377-12802396 None:intergenic 25.0%
!!! TTTTGAAAGTAGTAAAAACC+GGG - chr5_3:12802911-12802930 None:intergenic 25.0%
!!! GTTTTGAAAGTAGTAAAAAC+CGG - chr5_3:12802912-12802931 None:intergenic 25.0%
!! TTTTACTACTTTCAAAACAC+CGG + chr5_3:12802914-12802933 Msa0799540:CDS 25.0%
!!! TTAGAAGAAGGTATTTTCTT+CGG - chr5_3:12803125-12803144 None:intergenic 25.0%
! AAGAAAATACCTTCTTCTAA+CGG + chr5_3:12803125-12803144 Msa0799540:CDS 25.0%
! AAAAAATGTGTACACTAACT+CGG - chr5_3:12803570-12803589 None:intergenic 25.0%
!! ACGTTTGAAATATAAATGAG+AGG + chr5_3:12803754-12803773 Msa0799540:three_prime_UTR 25.0%
! TAGAGAAAGAAGAAAAGAAA+AGG + chr5_3:12801966-12801985 Msa0799540:five_prime_UTR 25.0%
! ATTTCATCAACAAATGTTTG+AGG - chr5_3:12802377-12802396 None:intergenic 25.0%
!!! TTTTGAAAGTAGTAAAAACC+GGG - chr5_3:12802911-12802930 None:intergenic 25.0%
!!! GTTTTGAAAGTAGTAAAAAC+CGG - chr5_3:12802912-12802931 None:intergenic 25.0%
!! TTTTACTACTTTCAAAACAC+CGG + chr5_3:12802914-12802933 Msa0799540:CDS 25.0%
!!! TTAGAAGAAGGTATTTTCTT+CGG - chr5_3:12803125-12803144 None:intergenic 25.0%
! AAGAAAATACCTTCTTCTAA+CGG + chr5_3:12803125-12803144 Msa0799540:CDS 25.0%
! AAAAAATGTGTACACTAACT+CGG - chr5_3:12803570-12803589 None:intergenic 25.0%
AAGAAAAGGTAAATTAGGAG+TGG + chr5_3:12801980-12801999 Msa0799540:five_prime_UTR 30.0%
AGAAAAGGTAAATTAGGAGT+GGG + chr5_3:12801981-12802000 Msa0799540:five_prime_UTR 30.0%
!! TTGGTAAAGCATTGAATGAA+GGG - chr5_3:12802063-12802082 None:intergenic 30.0%
!! TTTGGTAAAGCATTGAATGA+AGG - chr5_3:12802064-12802083 None:intergenic 30.0%
AAATTGAAAGAGAAGAGGAT+AGG - chr5_3:12802090-12802109 None:intergenic 30.0%
! TTTTTGTGGTGAAACTGATA+TGG - chr5_3:12802150-12802169 None:intergenic 30.0%
! GAAAAGAGAGAAAGTTTTTG+TGG - chr5_3:12802164-12802183 None:intergenic 30.0%
!! GTTTTGTTAGGCTTCAAAAA+CGG + chr5_3:12802298-12802317 Msa0799540:intron 30.0%
AGTTATGTCTTTCCTTAAAC+TGG - chr5_3:12802354-12802373 None:intergenic 30.0%
! AGTTTCATGGTTTTCTTTGA+GGG - chr5_3:12802522-12802541 None:intergenic 30.0%
! AAGTTTCATGGTTTTCTTTG+AGG - chr5_3:12802523-12802542 None:intergenic 30.0%
!! AATGGCTTTAACAACAACAA+CGG + chr5_3:12802830-12802849 Msa0799540:CDS 30.0%
ATGTTGGTGTAAATCAGTAA+GGG - chr5_3:12803068-12803087 None:intergenic 30.0%
AGAAAATACCTTCTTCTAAC+GGG + chr5_3:12803126-12803145 Msa0799540:CDS 30.0%
GCAATTCACTTGAAAATGTA+GGG - chr5_3:12803328-12803347 None:intergenic 30.0%
TGCAATTCACTTGAAAATGT+AGG - chr5_3:12803329-12803348 None:intergenic 30.0%
GTTGAAATTGAAGTTGAAAC+TGG + chr5_3:12803407-12803426 Msa0799540:CDS 30.0%
AATCAAAAACTAGGAACAAC+CGG - chr5_3:12803446-12803465 None:intergenic 30.0%
AAAAATGTGTACACTAACTC+GGG - chr5_3:12803569-12803588 None:intergenic 30.0%
! TTAGGCTTTTGTAACTGTTT+AGG + chr5_3:12803623-12803642 Msa0799540:three_prime_UTR 30.0%
AAGAAAAGGTAAATTAGGAG+TGG + chr5_3:12801980-12801999 Msa0799540:five_prime_UTR 30.0%
AGAAAAGGTAAATTAGGAGT+GGG + chr5_3:12801981-12802000 Msa0799540:five_prime_UTR 30.0%
!! TTGGTAAAGCATTGAATGAA+GGG - chr5_3:12802063-12802082 None:intergenic 30.0%
!! TTTGGTAAAGCATTGAATGA+AGG - chr5_3:12802064-12802083 None:intergenic 30.0%
AAATTGAAAGAGAAGAGGAT+AGG - chr5_3:12802090-12802109 None:intergenic 30.0%
! TTTTTGTGGTGAAACTGATA+TGG - chr5_3:12802150-12802169 None:intergenic 30.0%
! GAAAAGAGAGAAAGTTTTTG+TGG - chr5_3:12802164-12802183 None:intergenic 30.0%
!! GTTTTGTTAGGCTTCAAAAA+CGG + chr5_3:12802298-12802317 Msa0799540:intron 30.0%
AGTTATGTCTTTCCTTAAAC+TGG - chr5_3:12802354-12802373 None:intergenic 30.0%
! AGTTTCATGGTTTTCTTTGA+GGG - chr5_3:12802522-12802541 None:intergenic 30.0%
! AAGTTTCATGGTTTTCTTTG+AGG - chr5_3:12802523-12802542 None:intergenic 30.0%
!! AATGGCTTTAACAACAACAA+CGG + chr5_3:12802830-12802849 Msa0799540:CDS 30.0%
ATGTTGGTGTAAATCAGTAA+GGG - chr5_3:12803068-12803087 None:intergenic 30.0%
AGAAAATACCTTCTTCTAAC+GGG + chr5_3:12803126-12803145 Msa0799540:CDS 30.0%
GCAATTCACTTGAAAATGTA+GGG - chr5_3:12803328-12803347 None:intergenic 30.0%
TGCAATTCACTTGAAAATGT+AGG - chr5_3:12803329-12803348 None:intergenic 30.0%
GTTGAAATTGAAGTTGAAAC+TGG + chr5_3:12803407-12803426 Msa0799540:CDS 30.0%
AATCAAAAACTAGGAACAAC+CGG - chr5_3:12803446-12803465 None:intergenic 30.0%
AAAAATGTGTACACTAACTC+GGG - chr5_3:12803569-12803588 None:intergenic 30.0%
! TTAGGCTTTTGTAACTGTTT+AGG + chr5_3:12803623-12803642 Msa0799540:three_prime_UTR 30.0%
GGATGAAATTGAAAGAGAAG+AGG - chr5_3:12802095-12802114 None:intergenic 35.0%
AGTAATAATACCTGTGAGTG+AGG - chr5_3:12802200-12802219 None:intergenic 35.0%
TTAGGCTTCAAAAACGGAAA+TGG + chr5_3:12802304-12802323 Msa0799540:intron 35.0%
! TTGTTCCATTTTGTGCATTG+AGG - chr5_3:12802406-12802425 None:intergenic 35.0%
AGTGTTCTTGTTCTTCTTCT+TGG - chr5_3:12802487-12802506 None:intergenic 35.0%
! TGTTAGGGTTTGAAGTTTCA+TGG - chr5_3:12802535-12802554 None:intergenic 35.0%
! CAAACACAACAAGGCTTTTA+GGG - chr5_3:12802863-12802882 None:intergenic 35.0%
! TCAAACACAACAAGGCTTTT+AGG - chr5_3:12802864-12802883 None:intergenic 35.0%
! TAAATCAGTAAGGGACTAGT+TGG - chr5_3:12803059-12803078 None:intergenic 35.0%
CATGTTGGTGTAAATCAGTA+AGG - chr5_3:12803069-12803088 None:intergenic 35.0%
!! GTCAAAACTTTGAAGCATGT+TGG - chr5_3:12803084-12803103 None:intergenic 35.0%
!!! CATGCTTCAAAGTTTTGACT+CGG + chr5_3:12803085-12803104 Msa0799540:CDS 35.0%
!!! TCAAAGTTTTGACTCGGTTA+AGG + chr5_3:12803091-12803110 Msa0799540:CDS 35.0%
AAAACACTTTGCAATGCATG+TGG + chr5_3:12803251-12803270 Msa0799540:CDS 35.0%
AAACACTTTGCAATGCATGT+GGG + chr5_3:12803252-12803271 Msa0799540:CDS 35.0%
! TTTTCTTCCTGTATTGAGTG+CGG + chr5_3:12803587-12803606 Msa0799540:three_prime_UTR 35.0%
GGATGAAATTGAAAGAGAAG+AGG - chr5_3:12802095-12802114 None:intergenic 35.0%
AGTAATAATACCTGTGAGTG+AGG - chr5_3:12802200-12802219 None:intergenic 35.0%
TTAGGCTTCAAAAACGGAAA+TGG + chr5_3:12802304-12802323 Msa0799540:intron 35.0%
! TTGTTCCATTTTGTGCATTG+AGG - chr5_3:12802406-12802425 None:intergenic 35.0%
AGTGTTCTTGTTCTTCTTCT+TGG - chr5_3:12802487-12802506 None:intergenic 35.0%
! TGTTAGGGTTTGAAGTTTCA+TGG - chr5_3:12802535-12802554 None:intergenic 35.0%
! CAAACACAACAAGGCTTTTA+GGG - chr5_3:12802863-12802882 None:intergenic 35.0%
! TCAAACACAACAAGGCTTTT+AGG - chr5_3:12802864-12802883 None:intergenic 35.0%
! TAAATCAGTAAGGGACTAGT+TGG - chr5_3:12803059-12803078 None:intergenic 35.0%
CATGTTGGTGTAAATCAGTA+AGG - chr5_3:12803069-12803088 None:intergenic 35.0%
!! GTCAAAACTTTGAAGCATGT+TGG - chr5_3:12803084-12803103 None:intergenic 35.0%
!!! CATGCTTCAAAGTTTTGACT+CGG + chr5_3:12803085-12803104 Msa0799540:CDS 35.0%
!!! TCAAAGTTTTGACTCGGTTA+AGG + chr5_3:12803091-12803110 Msa0799540:CDS 35.0%
AAAACACTTTGCAATGCATG+TGG + chr5_3:12803251-12803270 Msa0799540:CDS 35.0%
AAACACTTTGCAATGCATGT+GGG + chr5_3:12803252-12803271 Msa0799540:CDS 35.0%
! TTTTCTTCCTGTATTGAGTG+CGG + chr5_3:12803587-12803606 Msa0799540:three_prime_UTR 35.0%
AGAGAAGAGGATAGGAAGTT+TGG - chr5_3:12802082-12802101 None:intergenic 40.0%
! ATGGTGGAAGAAGAATGCAA+AGG - chr5_3:12802116-12802135 None:intergenic 40.0%
TGATATGGTTGAGAGAGGAA+TGG - chr5_3:12802135-12802154 None:intergenic 40.0%
GAAACTGATATGGTTGAGAG+AGG - chr5_3:12802140-12802159 None:intergenic 40.0%
! CAGCGTTGAAAACCAGTTTA+AGG + chr5_3:12802339-12802358 Msa0799540:CDS 40.0%
TCAGTCCTCAATGCACAAAA+TGG + chr5_3:12802398-12802417 Msa0799540:CDS 40.0%
CAACATGAGAGAAGTCAAGA+AGG - chr5_3:12802454-12802473 None:intergenic 40.0%
!! TTTTCTTTGAGGGAGAGACA+AGG - chr5_3:12802512-12802531 None:intergenic 40.0%
! ATCTTCTTTGAGAGAGAGAG+TGG - chr5_3:12802558-12802577 None:intergenic 40.0%
! TGTACAGAGTGATGATGTAG+CGG + chr5_3:12802758-12802777 Msa0799540:intron 40.0%
!! ATGATGTAGCGGATTTGGAA+TGG + chr5_3:12802769-12802788 Msa0799540:CDS 40.0%
!! GAAGATACTGATTCCTTCTC+TGG + chr5_3:12802807-12802826 Msa0799540:CDS 40.0%
!! TACTGATTCCTTCTCTGGAA+TGG + chr5_3:12802812-12802831 Msa0799540:CDS 40.0%
TGTTAAAGCCATTCCAGAGA+AGG - chr5_3:12802823-12802842 None:intergenic 40.0%
TGGGTTCTTCAAACACAACA+AGG - chr5_3:12802872-12802891 None:intergenic 40.0%
! AAAACCGGGTTTTCTTGCTT+CGG - chr5_3:12802897-12802916 None:intergenic 40.0%
GGTTGAGCTTGAAGAAGAAT+CGG - chr5_3:12803003-12803022 None:intergenic 40.0%
AGAGGTTGAAGATGAAGTTG+TGG - chr5_3:12803030-12803049 None:intergenic 40.0%
! AATACCTTCTTCTAACGGGT+CGG + chr5_3:12803130-12803149 Msa0799540:CDS 40.0%
!! CAAAGTGTTTTTGCTCCAAG+GGG - chr5_3:12803242-12803261 None:intergenic 40.0%
!! GCAAAGTGTTTTTGCTCCAA+GGG - chr5_3:12803243-12803262 None:intergenic 40.0%
!! TGCAAAGTGTTTTTGCTCCA+AGG - chr5_3:12803244-12803263 None:intergenic 40.0%
AACACTTTGCAATGCATGTG+GGG + chr5_3:12803253-12803272 Msa0799540:CDS 40.0%
TGAAAATGTAGGGCTACAAG+CGG - chr5_3:12803318-12803337 None:intergenic 40.0%
! AGATTTTAGACCCGGTTCAA+TGG + chr5_3:12803541-12803560 Msa0799540:three_prime_UTR 40.0%
! GATTTTAGACCCGGTTCAAT+GGG + chr5_3:12803542-12803561 Msa0799540:three_prime_UTR 40.0%
TGCGGTAGGTTAGGTTAATT+AGG + chr5_3:12803605-12803624 Msa0799540:three_prime_UTR 40.0%
AGAGAAGAGGATAGGAAGTT+TGG - chr5_3:12802082-12802101 None:intergenic 40.0%
! ATGGTGGAAGAAGAATGCAA+AGG - chr5_3:12802116-12802135 None:intergenic 40.0%
TGATATGGTTGAGAGAGGAA+TGG - chr5_3:12802135-12802154 None:intergenic 40.0%
GAAACTGATATGGTTGAGAG+AGG - chr5_3:12802140-12802159 None:intergenic 40.0%
! CAGCGTTGAAAACCAGTTTA+AGG + chr5_3:12802339-12802358 Msa0799540:CDS 40.0%
TCAGTCCTCAATGCACAAAA+TGG + chr5_3:12802398-12802417 Msa0799540:CDS 40.0%
CAACATGAGAGAAGTCAAGA+AGG - chr5_3:12802454-12802473 None:intergenic 40.0%
!! TTTTCTTTGAGGGAGAGACA+AGG - chr5_3:12802512-12802531 None:intergenic 40.0%
! ATCTTCTTTGAGAGAGAGAG+TGG - chr5_3:12802558-12802577 None:intergenic 40.0%
! TGTACAGAGTGATGATGTAG+CGG + chr5_3:12802758-12802777 Msa0799540:intron 40.0%
!! ATGATGTAGCGGATTTGGAA+TGG + chr5_3:12802769-12802788 Msa0799540:CDS 40.0%
!! GAAGATACTGATTCCTTCTC+TGG + chr5_3:12802807-12802826 Msa0799540:CDS 40.0%
!! TACTGATTCCTTCTCTGGAA+TGG + chr5_3:12802812-12802831 Msa0799540:CDS 40.0%
TGTTAAAGCCATTCCAGAGA+AGG - chr5_3:12802823-12802842 None:intergenic 40.0%
TGGGTTCTTCAAACACAACA+AGG - chr5_3:12802872-12802891 None:intergenic 40.0%
! AAAACCGGGTTTTCTTGCTT+CGG - chr5_3:12802897-12802916 None:intergenic 40.0%
GGTTGAGCTTGAAGAAGAAT+CGG - chr5_3:12803003-12803022 None:intergenic 40.0%
AGAGGTTGAAGATGAAGTTG+TGG - chr5_3:12803030-12803049 None:intergenic 40.0%
! AATACCTTCTTCTAACGGGT+CGG + chr5_3:12803130-12803149 Msa0799540:CDS 40.0%
!! CAAAGTGTTTTTGCTCCAAG+GGG - chr5_3:12803242-12803261 None:intergenic 40.0%
!! GCAAAGTGTTTTTGCTCCAA+GGG - chr5_3:12803243-12803262 None:intergenic 40.0%
!! TGCAAAGTGTTTTTGCTCCA+AGG - chr5_3:12803244-12803263 None:intergenic 40.0%
AACACTTTGCAATGCATGTG+GGG + chr5_3:12803253-12803272 Msa0799540:CDS 40.0%
TGAAAATGTAGGGCTACAAG+CGG - chr5_3:12803318-12803337 None:intergenic 40.0%
! AGATTTTAGACCCGGTTCAA+TGG + chr5_3:12803541-12803560 Msa0799540:three_prime_UTR 40.0%
! GATTTTAGACCCGGTTCAAT+GGG + chr5_3:12803542-12803561 Msa0799540:three_prime_UTR 40.0%
TGCGGTAGGTTAGGTTAATT+AGG + chr5_3:12803605-12803624 Msa0799540:three_prime_UTR 40.0%
GGGAAGAGAGAGAAAGAAAC+TGG + chr5_3:12802001-12802020 Msa0799540:five_prime_UTR 45.0%
TATGGTTGAGAGAGGAATGG+TGG - chr5_3:12802132-12802151 None:intergenic 45.0%
AATACCTGTGAGTGAGGATG+AGG - chr5_3:12802194-12802213 None:intergenic 45.0%
! TGAGAGAGAGAGTGGTGTTA+GGG - chr5_3:12802550-12802569 None:intergenic 45.0%
TTGAGAGAGAGAGTGGTGTT+AGG - chr5_3:12802551-12802570 None:intergenic 45.0%
!! GAGTGATGATGTAGCGGATT+TGG + chr5_3:12802764-12802783 Msa0799540:intron 45.0%
!! CTTCTAGCTTTGGTCTGAAC+CGG - chr5_3:12802936-12802955 None:intergenic 45.0%
!!! GGCTCTTTTGCTTCTAGCTT+TGG - chr5_3:12802946-12802965 None:intergenic 45.0%
AGAAGCAAAAGAGCCAGAAC+CGG + chr5_3:12802951-12802970 Msa0799540:CDS 45.0%
TGAAGATGAAGTTGTGGTGG+TGG - chr5_3:12803024-12803043 None:intergenic 45.0%
GGTTGAAGATGAAGTTGTGG+TGG - chr5_3:12803027-12803046 None:intergenic 45.0%
! ATACCTTCTTCTAACGGGTC+GGG + chr5_3:12803131-12803150 Msa0799540:CDS 45.0%
GTGTAACAAAGACTCCTCAG+TGG + chr5_3:12803207-12803226 Msa0799540:CDS 45.0%
ATGTGGGGTCCGTTTCAAAT+CGG + chr5_3:12803268-12803287 Msa0799540:CDS 45.0%
! ACAACCGACCCGATTTGAAA+CGG - chr5_3:12803280-12803299 None:intergenic 45.0%
GAAAATGTAGGGCTACAAGC+GGG - chr5_3:12803317-12803336 None:intergenic 45.0%
AATTGCACTCAAACCACCAC+CGG + chr5_3:12803342-12803361 Msa0799540:CDS 45.0%
!! ACCGGAAAGTGCTTGAAATG+CGG + chr5_3:12803360-12803379 Msa0799540:CDS 45.0%
AACTAGGAACAACCGGAGAA+CGG - chr5_3:12803439-12803458 None:intergenic 45.0%
! GGTAGTGCAGATTTTAGACC+CGG + chr5_3:12803533-12803552 Msa0799540:three_prime_UTR 45.0%
TAACCTACCGCACTCAATAC+AGG - chr5_3:12803597-12803616 None:intergenic 45.0%
TGTATTGAGTGCGGTAGGTT+AGG + chr5_3:12803596-12803615 Msa0799540:three_prime_UTR 45.0%
GGGAAGAGAGAGAAAGAAAC+TGG + chr5_3:12802001-12802020 Msa0799540:five_prime_UTR 45.0%
TATGGTTGAGAGAGGAATGG+TGG - chr5_3:12802132-12802151 None:intergenic 45.0%
AATACCTGTGAGTGAGGATG+AGG - chr5_3:12802194-12802213 None:intergenic 45.0%
! TGAGAGAGAGAGTGGTGTTA+GGG - chr5_3:12802550-12802569 None:intergenic 45.0%
TTGAGAGAGAGAGTGGTGTT+AGG - chr5_3:12802551-12802570 None:intergenic 45.0%
!! GAGTGATGATGTAGCGGATT+TGG + chr5_3:12802764-12802783 Msa0799540:intron 45.0%
!! CTTCTAGCTTTGGTCTGAAC+CGG - chr5_3:12802936-12802955 None:intergenic 45.0%
!!! GGCTCTTTTGCTTCTAGCTT+TGG - chr5_3:12802946-12802965 None:intergenic 45.0%
AGAAGCAAAAGAGCCAGAAC+CGG + chr5_3:12802951-12802970 Msa0799540:CDS 45.0%
TGAAGATGAAGTTGTGGTGG+TGG - chr5_3:12803024-12803043 None:intergenic 45.0%
GGTTGAAGATGAAGTTGTGG+TGG - chr5_3:12803027-12803046 None:intergenic 45.0%
! ATACCTTCTTCTAACGGGTC+GGG + chr5_3:12803131-12803150 Msa0799540:CDS 45.0%
GTGTAACAAAGACTCCTCAG+TGG + chr5_3:12803207-12803226 Msa0799540:CDS 45.0%
ATGTGGGGTCCGTTTCAAAT+CGG + chr5_3:12803268-12803287 Msa0799540:CDS 45.0%
! ACAACCGACCCGATTTGAAA+CGG - chr5_3:12803280-12803299 None:intergenic 45.0%
GAAAATGTAGGGCTACAAGC+GGG - chr5_3:12803317-12803336 None:intergenic 45.0%
AATTGCACTCAAACCACCAC+CGG + chr5_3:12803342-12803361 Msa0799540:CDS 45.0%
!! ACCGGAAAGTGCTTGAAATG+CGG + chr5_3:12803360-12803379 Msa0799540:CDS 45.0%
AACTAGGAACAACCGGAGAA+CGG - chr5_3:12803439-12803458 None:intergenic 45.0%
! GGTAGTGCAGATTTTAGACC+CGG + chr5_3:12803533-12803552 Msa0799540:three_prime_UTR 45.0%
TAACCTACCGCACTCAATAC+AGG - chr5_3:12803597-12803616 None:intergenic 45.0%
TGTATTGAGTGCGGTAGGTT+AGG + chr5_3:12803596-12803615 Msa0799540:three_prime_UTR 45.0%
!! AAAAAAAAAAATACTAAAAA+AGG - chr5_3:12803699-12803718 None:intergenic 5.0%
!! AAAAAAAAAAATACTAAAAA+AGG - chr5_3:12803699-12803718 None:intergenic 5.0%
!! ATGAAGGGTGAAAGCGTCCA+AGG - chr5_3:12802048-12802067 None:intergenic 50.0%
TCTTCCTCATCCTCACTCAC+AGG + chr5_3:12802187-12802206 Msa0799540:CDS 50.0%
GGAACGTTGAGTTCGTTGGT+GGG - chr5_3:12802593-12802612 None:intergenic 50.0%
CACCAACGAACTCAACGTTC+CGG + chr5_3:12802592-12802611 Msa0799540:CDS 50.0%
TACCGGAACGTTGAGTTCGT+TGG - chr5_3:12802597-12802616 None:intergenic 50.0%
! GGGTTTTCTTGCTTCGGCTT+GGG - chr5_3:12802891-12802910 None:intergenic 50.0%
CAAGCCGAAGCAAGAAAACC+CGG + chr5_3:12802890-12802909 Msa0799540:CDS 50.0%
AAAGAGCCAGAACCGGTGTT+AGG + chr5_3:12802958-12802977 Msa0799540:CDS 50.0%
! AAGAGCCAGAACCGGTGTTA+GGG + chr5_3:12802959-12802978 Msa0799540:CDS 50.0%
GAATGGCCAAACCCTAACAC+CGG - chr5_3:12802973-12802992 None:intergenic 50.0%
GGTGTTAGGGTTTGGCCATT+CGG + chr5_3:12802972-12802991 Msa0799540:CDS 50.0%
GTGTTAGGGTTTGGCCATTC+GGG + chr5_3:12802973-12802992 Msa0799540:CDS 50.0%
GAAGAATCGGTTGACCCGAA+TGG - chr5_3:12802990-12803009 None:intergenic 50.0%
!! GGGACTAGTTGGAGATGAAG+AGG - chr5_3:12803048-12803067 None:intergenic 50.0%
AAGACTCCTCAGTGGAGAAG+TGG + chr5_3:12803215-12803234 Msa0799540:CDS 50.0%
TGTGGGGTCCGTTTCAAATC+GGG + chr5_3:12803269-12803288 Msa0799540:CDS 50.0%
TTTCAAGCACTTTCCGGTGG+TGG - chr5_3:12803358-12803377 None:intergenic 50.0%
GCATTTCAAGCACTTTCCGG+TGG - chr5_3:12803361-12803380 None:intergenic 50.0%
GCCGCATTTCAAGCACTTTC+CGG - chr5_3:12803364-12803383 None:intergenic 50.0%
!! GGAAAGTGCTTGAAATGCGG+CGG + chr5_3:12803363-12803382 Msa0799540:CDS 50.0%
!! AACTGGTTTGTCCCGTTCTC+CGG + chr5_3:12803424-12803443 Msa0799540:CDS 50.0%
ACTAGGAACAACCGGAGAAC+GGG - chr5_3:12803438-12803457 None:intergenic 50.0%
TAACTCGGGTCCCATTGAAC+CGG - chr5_3:12803555-12803574 None:intergenic 50.0%
CTTCCTGTATTGAGTGCGGT+AGG + chr5_3:12803591-12803610 Msa0799540:three_prime_UTR 50.0%
!! ATGAAGGGTGAAAGCGTCCA+AGG - chr5_3:12802048-12802067 None:intergenic 50.0%
TCTTCCTCATCCTCACTCAC+AGG + chr5_3:12802187-12802206 Msa0799540:CDS 50.0%
GGAACGTTGAGTTCGTTGGT+GGG - chr5_3:12802593-12802612 None:intergenic 50.0%
CACCAACGAACTCAACGTTC+CGG + chr5_3:12802592-12802611 Msa0799540:CDS 50.0%
TACCGGAACGTTGAGTTCGT+TGG - chr5_3:12802597-12802616 None:intergenic 50.0%
! GGGTTTTCTTGCTTCGGCTT+GGG - chr5_3:12802891-12802910 None:intergenic 50.0%
CAAGCCGAAGCAAGAAAACC+CGG + chr5_3:12802890-12802909 Msa0799540:CDS 50.0%
AAAGAGCCAGAACCGGTGTT+AGG + chr5_3:12802958-12802977 Msa0799540:CDS 50.0%
! AAGAGCCAGAACCGGTGTTA+GGG + chr5_3:12802959-12802978 Msa0799540:CDS 50.0%
GAATGGCCAAACCCTAACAC+CGG - chr5_3:12802973-12802992 None:intergenic 50.0%
GGTGTTAGGGTTTGGCCATT+CGG + chr5_3:12802972-12802991 Msa0799540:CDS 50.0%
GTGTTAGGGTTTGGCCATTC+GGG + chr5_3:12802973-12802992 Msa0799540:CDS 50.0%
GAAGAATCGGTTGACCCGAA+TGG - chr5_3:12802990-12803009 None:intergenic 50.0%
!! GGGACTAGTTGGAGATGAAG+AGG - chr5_3:12803048-12803067 None:intergenic 50.0%
AAGACTCCTCAGTGGAGAAG+TGG + chr5_3:12803215-12803234 Msa0799540:CDS 50.0%
TGTGGGGTCCGTTTCAAATC+GGG + chr5_3:12803269-12803288 Msa0799540:CDS 50.0%
TTTCAAGCACTTTCCGGTGG+TGG - chr5_3:12803358-12803377 None:intergenic 50.0%
GCATTTCAAGCACTTTCCGG+TGG - chr5_3:12803361-12803380 None:intergenic 50.0%
GCCGCATTTCAAGCACTTTC+CGG - chr5_3:12803364-12803383 None:intergenic 50.0%
!! GGAAAGTGCTTGAAATGCGG+CGG + chr5_3:12803363-12803382 Msa0799540:CDS 50.0%
!! AACTGGTTTGTCCCGTTCTC+CGG + chr5_3:12803424-12803443 Msa0799540:CDS 50.0%
ACTAGGAACAACCGGAGAAC+GGG - chr5_3:12803438-12803457 None:intergenic 50.0%
TAACTCGGGTCCCATTGAAC+CGG - chr5_3:12803555-12803574 None:intergenic 50.0%
CTTCCTGTATTGAGTGCGGT+AGG + chr5_3:12803591-12803610 Msa0799540:three_prime_UTR 50.0%
CGGAACGTTGAGTTCGTTGG+TGG - chr5_3:12802594-12802613 None:intergenic 55.0%
! CGGGTTTTCTTGCTTCGGCT+TGG - chr5_3:12802892-12802911 None:intergenic 55.0%
!! CCAAACCCTAACACCGGTTC+TGG - chr5_3:12802967-12802986 None:intergenic 55.0%
! CCAGAACCGGTGTTAGGGTT+TGG + chr5_3:12802964-12802983 Msa0799540:CDS 55.0%
TGACCCGACCCGTTAGAAGA+AGG - chr5_3:12803137-12803156 None:intergenic 55.0%
! TCTTCTAACGGGTCGGGTCA+AGG + chr5_3:12803137-12803156 Msa0799540:CDS 55.0%
!! TCAAGGTGGTGCGCTGGTTA+TGG + chr5_3:12803154-12803173 Msa0799540:CDS 55.0%
GGGTCCGTTTCAAATCGGGT+CGG + chr5_3:12803273-12803292 Msa0799540:CDS 55.0%
CTACAAGCGGGTCGATACTC+GGG - chr5_3:12803305-12803324 None:intergenic 55.0%
GCTACAAGCGGGTCGATACT+CGG - chr5_3:12803306-12803325 None:intergenic 55.0%
GCTTGAAATGCGGCGGAAGA+AGG + chr5_3:12803370-12803389 Msa0799540:CDS 55.0%
TGAAATGCGGCGGAAGAAGG+AGG + chr5_3:12803373-12803392 Msa0799540:CDS 55.0%
CGGAAGAAGGAGGTTGTTGG+TGG + chr5_3:12803383-12803402 Msa0799540:CDS 55.0%
AACTCGGGTCCCATTGAACC+GGG - chr5_3:12803554-12803573 None:intergenic 55.0%
CGGAACGTTGAGTTCGTTGG+TGG - chr5_3:12802594-12802613 None:intergenic 55.0%
! CGGGTTTTCTTGCTTCGGCT+TGG - chr5_3:12802892-12802911 None:intergenic 55.0%
!! CCAAACCCTAACACCGGTTC+TGG - chr5_3:12802967-12802986 None:intergenic 55.0%
! CCAGAACCGGTGTTAGGGTT+TGG + chr5_3:12802964-12802983 Msa0799540:CDS 55.0%
TGACCCGACCCGTTAGAAGA+AGG - chr5_3:12803137-12803156 None:intergenic 55.0%
! TCTTCTAACGGGTCGGGTCA+AGG + chr5_3:12803137-12803156 Msa0799540:CDS 55.0%
!! TCAAGGTGGTGCGCTGGTTA+TGG + chr5_3:12803154-12803173 Msa0799540:CDS 55.0%
GGGTCCGTTTCAAATCGGGT+CGG + chr5_3:12803273-12803292 Msa0799540:CDS 55.0%
CTACAAGCGGGTCGATACTC+GGG - chr5_3:12803305-12803324 None:intergenic 55.0%
GCTACAAGCGGGTCGATACT+CGG - chr5_3:12803306-12803325 None:intergenic 55.0%
GCTTGAAATGCGGCGGAAGA+AGG + chr5_3:12803370-12803389 Msa0799540:CDS 55.0%
TGAAATGCGGCGGAAGAAGG+AGG + chr5_3:12803373-12803392 Msa0799540:CDS 55.0%
CGGAAGAAGGAGGTTGTTGG+TGG + chr5_3:12803383-12803402 Msa0799540:CDS 55.0%
AACTCGGGTCCCATTGAACC+GGG - chr5_3:12803554-12803573 None:intergenic 55.0%
! TCTAACGGGTCGGGTCAAGG+TGG + chr5_3:12803140-12803159 Msa0799540:CDS 60.0%
!! AGGTGGTGCGCTGGTTATGG+CGG + chr5_3:12803157-12803176 Msa0799540:CDS 60.0%
CCACAATGACTGCACCGTCG+CGG - chr5_3:12803188-12803207 None:intergenic 60.0%
AGGGGTCCACTTCTCCACTG+AGG - chr5_3:12803224-12803243 None:intergenic 60.0%
CAGTGGAGAAGTGGACCCCT+TGG + chr5_3:12803224-12803243 Msa0799540:CDS 60.0%
CGGCGGAAGAAGGAGGTTGT+TGG + chr5_3:12803380-12803399 Msa0799540:CDS 60.0%
! TCTAACGGGTCGGGTCAAGG+TGG + chr5_3:12803140-12803159 Msa0799540:CDS 60.0%
!! AGGTGGTGCGCTGGTTATGG+CGG + chr5_3:12803157-12803176 Msa0799540:CDS 60.0%
CCACAATGACTGCACCGTCG+CGG - chr5_3:12803188-12803207 None:intergenic 60.0%
AGGGGTCCACTTCTCCACTG+AGG - chr5_3:12803224-12803243 None:intergenic 60.0%
CAGTGGAGAAGTGGACCCCT+TGG + chr5_3:12803224-12803243 Msa0799540:CDS 60.0%
CGGCGGAAGAAGGAGGTTGT+TGG + chr5_3:12803380-12803399 Msa0799540:CDS 60.0%
CAATGACTGCACCGTCGCGG+TGG - chr5_3:12803185-12803204 None:intergenic 65.0%
CCGCGACGGTGCAGTCATTG+TGG + chr5_3:12803185-12803204 Msa0799540:CDS 65.0%
CAATGACTGCACCGTCGCGG+TGG - chr5_3:12803185-12803204 None:intergenic 65.0%
CCGCGACGGTGCAGTCATTG+TGG + chr5_3:12803185-12803204 Msa0799540:CDS 65.0%
GTCGGGTCAAGGTGGTGCGC+TGG + chr5_3:12803148-12803167 Msa0799540:CDS 70.0%
TTATGGCGGCGCCACCGCGA+CGG + chr5_3:12803171-12803190 Msa0799540:CDS 70.0%
GTCGGGTCAAGGTGGTGCGC+TGG + chr5_3:12803148-12803167 Msa0799540:CDS 70.0%
TTATGGCGGCGCCACCGCGA+CGG + chr5_3:12803171-12803190 Msa0799540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12801961 12803773 12801961 ID=Msa0799540;Name=Msa0799540
chr5_3 mRNA 12801961 12803773 12801961 ID=Msa0799540-mRNA-1;Parent=Msa0799540;Name=Msa0799540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=110|1|1|1|1|1|3|310|380
chr5_3 exon 12801961 12802208 12801961 ID=Msa0799540-mRNA-1:exon:5286;Parent=Msa0799540-mRNA-1
chr5_3 exon 12802308 12802613 12802308 ID=Msa0799540-mRNA-1:exon:5287;Parent=Msa0799540-mRNA-1
chr5_3 exon 12802765 12803773 12802765 ID=Msa0799540-mRNA-1:exon:5288;Parent=Msa0799540-mRNA-1
chr5_3 five_prime_UTR 12801961 12802070 12801961 ID=Msa0799540-mRNA-1:five_prime_utr;Parent=Msa0799540-mRNA-1
chr5_3 CDS 12802071 12802208 12802071 ID=Msa0799540-mRNA-1:cds;Parent=Msa0799540-mRNA-1
chr5_3 CDS 12802308 12802613 12802308 ID=Msa0799540-mRNA-1:cds;Parent=Msa0799540-mRNA-1
chr5_3 CDS 12802765 12803463 12802765 ID=Msa0799540-mRNA-1:cds;Parent=Msa0799540-mRNA-1
chr5_3 three_prime_UTR 12803464 12803773 12803464 ID=Msa0799540-mRNA-1:three_prime_utr;Parent=Msa0799540-mRNA-1
Gene Sequence

>Msa0799540

ATGCTTTACCAAACTTCCTATCCTCTTCTCTTTCAATTTCATCCTTTGCATTCTTCTTCCACCATTCCTCTCTCAACCATATCAGTTTCACCACAAAAACTTTCTCTCTTTTCTCATCTTCCTCATCCTCACTCACAGGCTTCAAAAACGGAAATGGAGTGCGTTGAAACAGCGTTGAAAACCAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAAATTTCAGTCCTCAATGCACAAAATGGAACAACTTCTGATGATTTTTTCGTTGACGACCTTCTTGACTTCTCTCATGTTGAAGAACAACACCAAGAAGAAGAACAAGAACACTCTCCTTGTCTCTCCCTCAAAGAAAACCATGAAACTTCAAACCCTAACACCACTCTCTCTCTCAAAGAAGATTATTCTTCTCTACCCACCAACGAACTCAACGTTCCGAGTGATGATGTAGCGGATTTGGAATGGCTTTCACATTTCGTTGAAGATACTGATTCCTTCTCTGGAATGGCTTTAACAACAACAACGGAGAAAAACCCTAAAAGCCTTGTTGTGTTTGAAGAACCCAAGCCGAAGCAAGAAAACCCGGTTTTTACTACTTTCAAAACACCGGTTCAGACCAAAGCTAGAAGCAAAAGAGCCAGAACCGGTGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCAACCTCTTCATCTCCAACTAGTCCCTTACTGATTTACACCAACATGCTTCAAAGTTTTGACTCGGTTAAGGTAAAGAAACCGAAGAAAATACCTTCTTCTAACGGGTCGGGTCAAGGTGGTGCGCTGGTTATGGCGGCGCCACCGCGACGGTGCAGTCATTGTGGTGTAACAAAGACTCCTCAGTGGAGAAGTGGACCCCTTGGAGCAAAAACACTTTGCAATGCATGTGGGGTCCGTTTCAAATCGGGTCGGTTGTTACCCGAGTATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTGCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACTGGTTTGTCCCGTTCTCCGGTTGTTCCTAGTTTTTGA
Protein sequence

>Msa0799540

MLYQTSYPLLFQFHPLHSSSTIPLSTISVSPQKLSLFSHLPHPHSQASKTEMECVETALKTSLRKDITPQTFVDEISVLNAQNGTTSDDFFVDDLLDFSHVEEQHQEEEQEHSPCLSLKENHETSNPNTTLSLKEDYSSLPTNELNVPSDDVADLEWLSHFVEDTDSFSGMALTTTTEKNPKSLVVFEEPKPKQENPVFTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLLIYTNMLQSFDSVKVKKPKKIPSSNGSGQGGALVMAAPPRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGLSRSPVVPSF*