Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802050 | XP_024640320.1 | 95.077 | 711 | 20 | 1 | 1 | 711 | 1 | 696 | 0.0 | 1379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802050 | sp|Q8GZN1|NPG1_ARATH | 68.279 | 703 | 204 | 4 | 12 | 711 | 18 | 704 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802050 | G7K6T7 | 95.077 | 711 | 20 | 1 | 1 | 711 | 1 | 696 | 0.0 | 1379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0802050 | Msa0813160 | 0.804202 | 2.418523e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802050 | MtrunA17_Chr5g0409291 | 97.671 | 601 | 14 | 0 | 1 | 601 | 1 | 601 | 0.0 | 1207 |
| Msa0802050 | MtrunA17_Chr8g0369551 | 75.497 | 604 | 142 | 1 | 1 | 604 | 2 | 599 | 0.0 | 931 |
| Msa0802050 | MtrunA17_Chr1g0183461 | 47.750 | 689 | 337 | 6 | 26 | 707 | 40 | 712 | 0.0 | 601 |
| Msa0802050 | MtrunA17_Chr1g0187271 | 44.818 | 714 | 357 | 10 | 8 | 707 | 41 | 731 | 0.0 | 572 |
| Msa0802050 | MtrunA17_Chr7g0261581 | 46.331 | 695 | 353 | 5 | 17 | 707 | 49 | 727 | 0.0 | 561 |
| Msa0802050 | MtrunA17_Chr1g0152501 | 39.667 | 721 | 402 | 9 | 2 | 707 | 14 | 716 | 1.26e-156 | 470 |
| Msa0802050 | MtrunA17_Chr5g0409281 | 94.393 | 107 | 6 | 0 | 605 | 711 | 8 | 114 | 2.37e-65 | 211 |
| Msa0802050 | MtrunA17_Chr8g0369541 | 72.072 | 111 | 30 | 1 | 601 | 711 | 16 | 125 | 7.18e-47 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802050 | AT2G43040.2 | 68.279 | 703 | 204 | 4 | 12 | 711 | 18 | 704 | 0.0 | 936 |
| Msa0802050 | AT2G43040.1 | 68.279 | 703 | 204 | 4 | 12 | 711 | 18 | 704 | 0.0 | 936 |
| Msa0802050 | AT4G28600.1 | 44.034 | 704 | 362 | 7 | 18 | 707 | 53 | 738 | 2.24e-177 | 525 |
| Msa0802050 | AT4G28600.2 | 44.034 | 704 | 362 | 7 | 18 | 707 | 53 | 738 | 2.24e-177 | 525 |
| Msa0802050 | AT4G28600.3 | 43.724 | 709 | 362 | 7 | 18 | 707 | 53 | 743 | 1.05e-176 | 523 |
| Msa0802050 | AT1G27460.1 | 39.804 | 716 | 385 | 10 | 2 | 707 | 14 | 693 | 4.40e-157 | 471 |
| Msa0802050 | AT1G27460.3 | 39.665 | 716 | 382 | 10 | 2 | 707 | 14 | 689 | 4.84e-157 | 471 |
| Msa0802050 | AT1G27460.2 | 42.037 | 540 | 289 | 7 | 2 | 531 | 14 | 539 | 9.86e-128 | 390 |
Find 175 sgRNAs with CRISPR-Local
Find 444 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAGATTTACAAGGCTTTA+AGG | 0.121965 | 5_3:-16219576 | Msa0802050:three_prime_UTR |
| TACTTTGAATATTCGGAATT+TGG | 0.129057 | 5_3:-16219942 | Msa0802050:exon |
| ATCTTACCTTTGAACTATTT+TGG | 0.134231 | 5_3:+16221852 | None:intergenic |
| GAGTGCTTCGATTCATAAAA+TGG | 0.164980 | 5_3:-16220157 | Msa0802050:CDS |
| TCAAATGGGTGGTTACATTA+AGG | 0.231207 | 5_3:+16219471 | None:intergenic |
| AAGTTAATGAATTCGATATT+TGG | 0.244355 | 5_3:-16220685 | Msa0802050:CDS |
| ATAGTAGCGTTGAGAGCTTC+TGG | 0.260314 | 5_3:+16220228 | None:intergenic |
| CTCTCAGCATGCTGCTACTT+TGG | 0.263592 | 5_3:-16223480 | Msa0802050:CDS |
| TTGGTCATGGTAAGATAAAA+TGG | 0.265903 | 5_3:-16222678 | Msa0802050:CDS |
| GTGAAATCAAACAAGATCTA+AGG | 0.278975 | 5_3:+16225517 | None:intergenic |
| AGCACCATACTTTGAATATT+CGG | 0.288043 | 5_3:-16219949 | Msa0802050:exon |
| TCCGCCTAGTTTAGCAGTTC+AGG | 0.303406 | 5_3:-16222773 | Msa0802050:CDS |
| ATGATTCTTATAAGAAAGTT+TGG | 0.303909 | 5_3:-16222697 | Msa0802050:CDS |
| ACGAGGCAATCTCTGCTTAT+AGG | 0.310182 | 5_3:-16222894 | Msa0802050:CDS |
| TGATGCTGCGGACTGCTTCC+AGG | 0.311615 | 5_3:-16220013 | Msa0802050:CDS |
| TCTGTCACCACTTCAGCTTC+TGG | 0.312526 | 5_3:+16222031 | None:intergenic |
| TGGTCCAAATGAGCATTTAA+AGG | 0.329646 | 5_3:-16222344 | Msa0802050:CDS |
| CGGCATTTCTTCAACGAAAC+TGG | 0.340685 | 5_3:-16222115 | Msa0802050:CDS |
| AGTTTAGCAGTTCAGGTTGA+TGG | 0.345558 | 5_3:-16222766 | Msa0802050:CDS |
| CAGGAAGCAAGGGCTCTTCT+TGG | 0.350110 | 5_3:-16223656 | Msa0802050:CDS |
| TTCAAATTGCATTGCTAAAA+CGG | 0.353834 | 5_3:+16222600 | None:intergenic |
| ACACCCTTTAAATGCTCATT+TGG | 0.359245 | 5_3:+16222340 | None:intergenic |
| GCATTGCTAAAACGGAAGTT+TGG | 0.360429 | 5_3:+16222608 | None:intergenic |
| TTACCGTCCACTTGAAAATC+AGG | 0.364427 | 5_3:+16222985 | None:intergenic |
| AGCATGCTTCTCGCAGCAGC+AGG | 0.365608 | 5_3:+16220120 | None:intergenic |
| AATTCCGAATATTCAAAGTA+TGG | 0.366416 | 5_3:+16219945 | None:intergenic |
| GGTGCTCTTCGTGTCTTTGA+TGG | 0.373551 | 5_3:-16223602 | Msa0802050:CDS |
| TTCCAATGACTCCAGAGCTT+TGG | 0.375483 | 5_3:+16222237 | None:intergenic |
| AAGAATCATTAAAAGCAAAA+TGG | 0.376723 | 5_3:+16222711 | None:intergenic |
| CCTCTGACTTCGAGAGGTCT+CGG | 0.377016 | 5_3:-16222267 | Msa0802050:CDS |
| CGCATGTTGGGACTTTGTCT+TGG | 0.378724 | 5_3:-16222310 | Msa0802050:CDS |
| TAGAGCTCCTTCCAGAGCTT+TGG | 0.380434 | 5_3:-16222936 | Msa0802050:CDS |
| GCTCCGTCTCCACGTTGCTT+TGG | 0.393320 | 5_3:-16225472 | Msa0802050:intron |
| GGTGTTGCTCTTCGCATGTT+GGG | 0.394139 | 5_3:-16222322 | Msa0802050:CDS |
| GTCCAAAGCTCTGGAGTCAT+TGG | 0.407486 | 5_3:-16222239 | Msa0802050:CDS |
| GTAATCTCACCGCTGCTTTG+CGG | 0.415533 | 5_3:-16222144 | Msa0802050:CDS |
| TTTAGGAAATAAAGTGAGAA+TGG | 0.416359 | 5_3:-16219745 | Msa0802050:three_prime_UTR |
| TATCAGAGAGGTAATGTAGA+AGG | 0.422535 | 5_3:-16223623 | Msa0802050:CDS |
| CCTCCTTGTTTCCAAAGCTC+TGG | 0.422585 | 5_3:+16222925 | None:intergenic |
| GCAAAAGGCCAGAGAGTTGA+AGG | 0.428629 | 5_3:-16220603 | Msa0802050:CDS |
| GCAAAGCAGCGGTGAGATTA+CGG | 0.428650 | 5_3:+16222146 | None:intergenic |
| TCGTATGGCTTGGTATTACT+TGG | 0.429140 | 5_3:-16220067 | Msa0802050:CDS |
| CAAATGGGTGGTTACATTAA+GGG | 0.429600 | 5_3:+16219472 | None:intergenic |
| GACTCCCTCACCGGCAAGAT+AGG | 0.432492 | 5_3:+16222399 | None:intergenic |
| TTGAACAGCAATCATTATCA+AGG | 0.435793 | 5_3:+16222848 | None:intergenic |
| CAAGGTTCCATTGACTAAGA+AGG | 0.438940 | 5_3:+16222866 | None:intergenic |
| CAAGCCCAGAGGAAATCCTT+TGG | 0.441583 | 5_3:-16221881 | Msa0802050:CDS |
| AATAACGATGTAAGGTCATC+TGG | 0.442221 | 5_3:+16222451 | None:intergenic |
| ATTGGAAGAGGCAACTAGAT+TGG | 0.444239 | 5_3:-16222221 | Msa0802050:CDS |
| TGTGAGAATACCTATCTTGC+CGG | 0.448885 | 5_3:-16222409 | Msa0802050:CDS |
| AAGGGCTCTTCTTGGGAAGT+TGG | 0.451477 | 5_3:-16223648 | Msa0802050:CDS |
| AAGCCCAGAGGAAATCCTTT+GGG | 0.452553 | 5_3:-16221880 | Msa0802050:CDS |
| CAGCATCCTTCCAACGAGAA+AGG | 0.453203 | 5_3:+16220636 | None:intergenic |
| CTTCCAGAGCTTTGGAAACA+AGG | 0.458535 | 5_3:-16222928 | Msa0802050:CDS |
| ATACGGAAAGTGCAAAAGTT+AGG | 0.459275 | 5_3:+16222635 | None:intergenic |
| CACTTGGTTGTGATCAGCAT+TGG | 0.462095 | 5_3:+16225542 | None:intergenic |
| CACAAGCATGATGGCCGAAT+GGG | 0.464770 | 5_3:-16220036 | Msa0802050:CDS |
| CAATTTGAAGACTTGATGCC+TGG | 0.466330 | 5_3:-16222586 | Msa0802050:CDS |
| GTGCTCTTCGTGTCTTTGAT+GGG | 0.470242 | 5_3:-16223601 | Msa0802050:CDS |
| GTTAGAGAGGTTCATGCAAA+TGG | 0.471435 | 5_3:-16224863 | Msa0802050:CDS |
| AGAGTACTCCTTCAACTCTC+TGG | 0.474679 | 5_3:+16220595 | None:intergenic |
| TCGGTTTCAGTCCAAAGCTC+TGG | 0.474832 | 5_3:-16222248 | Msa0802050:CDS |
| CAGAATCTGCATTGCGAGAA+GGG | 0.475918 | 5_3:-16224781 | Msa0802050:CDS |
| TAATACATCATCTGGGTTCA+AGG | 0.478034 | 5_3:-16219867 | Msa0802050:three_prime_UTR |
| AGGAAGCAAGGGCTCTTCTT+GGG | 0.479419 | 5_3:-16223655 | Msa0802050:CDS |
| TGTGGTTGTGTGCAGGTAGT+GGG | 0.484279 | 5_3:-16224929 | Msa0802050:intron |
| TCAGACTGTGAGATGGGAGC+AGG | 0.484887 | 5_3:-16221996 | Msa0802050:CDS |
| CTTCCAGGCAGCTTCCATGC+TGG | 0.485461 | 5_3:-16219998 | Msa0802050:CDS |
| GCTTTATGTCATTGTGCTGC+CGG | 0.486024 | 5_3:-16222529 | Msa0802050:CDS |
| AGTCCGCAGCATCACCCATT+CGG | 0.486676 | 5_3:+16220022 | None:intergenic |
| TGCTGAAATCTGTTTGCAAA+AGG | 0.487793 | 5_3:-16220618 | Msa0802050:CDS |
| CAGCTAATAATAACGATGTA+AGG | 0.491707 | 5_3:+16222443 | None:intergenic |
| AGTGCTTCGATTCATAAAAT+GGG | 0.493157 | 5_3:-16220156 | Msa0802050:CDS |
| GGTCCAAATGAGCATTTAAA+GGG | 0.496345 | 5_3:-16222343 | Msa0802050:CDS |
| CTTCCAGCATGGAAGCTGCC+TGG | 0.496401 | 5_3:+16219995 | None:intergenic |
| CTTATAAGAAAGTTTGGTCA+TGG | 0.496448 | 5_3:-16222691 | Msa0802050:CDS |
| GTGGCTCAATAGTGCAAGCT+TGG | 0.497407 | 5_3:-16222093 | Msa0802050:CDS |
| AAGACCCAAAGGATTTCCTC+TGG | 0.499636 | 5_3:+16221876 | None:intergenic |
| CTATCGCTACCTTCTTGCAT+TGG | 0.502927 | 5_3:-16221906 | Msa0802050:CDS |
| ATCCTTCCAACGAGAAAGGC+TGG | 0.507554 | 5_3:+16220640 | None:intergenic |
| GGATTAATTCACAAGCATGA+TGG | 0.508280 | 5_3:-16220045 | Msa0802050:CDS |
| AAAATGGGATCCTTCAATCA+TGG | 0.509467 | 5_3:-16222662 | Msa0802050:CDS |
| CGTATGGCTTGGTATTACTT+GGG | 0.510089 | 5_3:-16220066 | Msa0802050:CDS |
| GGCGTGCCCTTCTTAGTCAA+TGG | 0.510822 | 5_3:-16222873 | Msa0802050:CDS |
| TGGTCATGGTAAGATAAAAT+GGG | 0.512294 | 5_3:-16222677 | Msa0802050:CDS |
| AATTTACATAACAGCACTGC+TGG | 0.515611 | 5_3:+16219517 | None:intergenic |
| GGGTGTTGCTCTTCGCATGT+TGG | 0.519280 | 5_3:-16222323 | Msa0802050:CDS |
| GATTCATAAAATGGGCTCAA+AGG | 0.521200 | 5_3:-16220148 | Msa0802050:CDS |
| TGGTCGTTCGTGTTTGTGCA+AGG | 0.522255 | 5_3:+16222471 | None:intergenic |
| TGAATATTCGGAATTTGGAA+TGG | 0.525711 | 5_3:-16219937 | Msa0802050:three_prime_UTR |
| AAGGTTCCATTGACTAAGAA+GGG | 0.530296 | 5_3:+16222867 | None:intergenic |
| AACGGAAGTTTGGCTACATA+CGG | 0.533591 | 5_3:+16222618 | None:intergenic |
| AGATGAATCATGGAGTCCTC+TGG | 0.535594 | 5_3:-16224905 | Msa0802050:exon |
| AACCGACCAATCGTATGGCT+TGG | 0.538779 | 5_3:-16220077 | Msa0802050:CDS |
| AGCTCTGGAGTCATTGGAAG+AGG | 0.539943 | 5_3:-16222233 | Msa0802050:CDS |
| CTTTAGATCAGACTGTGAGA+TGG | 0.540240 | 5_3:-16222003 | Msa0802050:CDS |
| AAGATTTCCAGAAGCTGAAG+TGG | 0.541223 | 5_3:-16222038 | Msa0802050:CDS |
| GGTAGTGGGGAGATGAATCA+TGG | 0.541614 | 5_3:-16224915 | Msa0802050:exon |
| CCGCGCAGACCGCAAAGCAG+CGG | 0.542593 | 5_3:+16222135 | None:intergenic |
| AATCGAACCGACCAATCGTA+TGG | 0.543064 | 5_3:-16220082 | Msa0802050:CDS |
| TGAAACTTTAACAGGAAGCA+AGG | 0.543113 | 5_3:-16223667 | Msa0802050:intron |
| GTTGAGGCTAAGCTCGATGA+AGG | 0.543498 | 5_3:-16224818 | Msa0802050:CDS |
| TTTAGATCAGACTGTGAGAT+GGG | 0.544165 | 5_3:-16222002 | Msa0802050:CDS |
| AATGAATTCGATATTTGGCA+TGG | 0.544518 | 5_3:-16220680 | Msa0802050:CDS |
| TGCCAGCCTTTCTCGTTGGA+AGG | 0.546961 | 5_3:-16220642 | Msa0802050:CDS |
| CGAGGGTTGCAACCGTTGGA+TGG | 0.547427 | 5_3:+16223562 | None:intergenic |
| GCATGCTGAGAGACTGAAGA+AGG | 0.548373 | 5_3:+16223491 | None:intergenic |
| TGAAATCAAACAAGATCTAA+GGG | 0.548533 | 5_3:+16225518 | None:intergenic |
| AATACCTATCTTGCCGGTGA+GGG | 0.550256 | 5_3:-16222403 | Msa0802050:CDS |
| ACCTCCATGCTGCCATCCAA+CGG | 0.550346 | 5_3:-16223574 | Msa0802050:CDS |
| TCACAAGCATGATGGCCGAA+TGG | 0.550882 | 5_3:-16220037 | Msa0802050:CDS |
| TGGTGAGCATGAAAGGTTGT+CGG | 0.552749 | 5_3:-16224885 | Msa0802050:CDS |
| CTTGTTTCCAAAGCTCTGGA+AGG | 0.557513 | 5_3:+16222929 | None:intergenic |
| TCAACCTGAACTGCTAAACT+AGG | 0.557755 | 5_3:+16222769 | None:intergenic |
| AAAACGAGGGTTGCAACCGT+TGG | 0.559120 | 5_3:+16223558 | None:intergenic |
| AATATTAACAACAACAACAT+AGG | 0.559552 | 5_3:-16225593 | Msa0802050:five_prime_UTR |
| AACAAGATCTAAGGGACACT+TGG | 0.560208 | 5_3:+16225526 | None:intergenic |
| GGGAGTCAGCCATGCGCAGA+GGG | 0.561340 | 5_3:-16222383 | Msa0802050:CDS |
| GTTAGGTGCTCCATGATTGA+AGG | 0.562812 | 5_3:+16222652 | None:intergenic |
| GCAGAATCTGCATTGCGAGA+AGG | 0.563955 | 5_3:-16224782 | Msa0802050:CDS |
| GAAACTTTAACAGGAAGCAA+GGG | 0.568089 | 5_3:-16223666 | Msa0802050:intron |
| TAACCAAAGCAACGTGGAGA+CGG | 0.569348 | 5_3:+16225469 | None:intergenic |
| TGAAAGGTTGTCGGTTAGAG+AGG | 0.570634 | 5_3:-16224876 | Msa0802050:CDS |
| TCAGTGCTTTGAATCTGCTA+AGG | 0.571950 | 5_3:-16222498 | Msa0802050:CDS |
| CGCATGGCTGACTCCCTCAC+CGG | 0.574050 | 5_3:+16222390 | None:intergenic |
| AGTCCTCTGGTGAGCATGAA+AGG | 0.575623 | 5_3:-16224892 | Msa0802050:CDS |
| AATGGTATAAATCTCACTGA+AGG | 0.580537 | 5_3:+16219902 | None:intergenic |
| AGACCCAAAGGATTTCCTCT+GGG | 0.586630 | 5_3:+16221877 | None:intergenic |
| GAGTTGTAAAGAACTTTGAT+CGG | 0.587280 | 5_3:-16219720 | Msa0802050:three_prime_UTR |
| CATTTCTTCAACGAAACTGG+TGG | 0.589141 | 5_3:-16222112 | Msa0802050:CDS |
| CAGACTGTGAGATGGGAGCA+GGG | 0.589901 | 5_3:-16221995 | Msa0802050:CDS |
| GTCTTACCAAAATAGTTCAA+AGG | 0.590169 | 5_3:-16221858 | Msa0802050:intron |
| TTGCTTCCTCTGACTTCGAG+AGG | 0.595737 | 5_3:-16222273 | Msa0802050:CDS |
| GGGATCAAATTCTTCCAGCA+TGG | 0.595819 | 5_3:+16219984 | None:intergenic |
| TATGGTGCTGAAACTTTCGA+TGG | 0.598680 | 5_3:+16219963 | None:intergenic |
| GATCGCCCAATCAAAACCGA+TGG | 0.599110 | 5_3:-16221942 | Msa0802050:CDS |
| GTGGTTGTGTGCAGGTAGTG+GGG | 0.599600 | 5_3:-16224928 | Msa0802050:intron |
| AGGGCAATCAAGAATGCTCA+TGG | 0.600976 | 5_3:-16222364 | Msa0802050:CDS |
| GAACAGAAACGTAAGAGTAG+AGG | 0.601653 | 5_3:+16225679 | None:intergenic |
| TATACCATCGTATCGATCGT+TGG | 0.604226 | 5_3:-16222561 | Msa0802050:CDS |
| TTCGCTTTAAGCTTAAGCAG+AGG | 0.605629 | 5_3:+16221971 | None:intergenic |
| GGGCTTGAACCAATGCAAGA+AGG | 0.606036 | 5_3:+16221897 | None:intergenic |
| GAATCTATACTCTTGCAACA+TGG | 0.606496 | 5_3:+16219630 | None:intergenic |
| TCGATACGATGGTATACTCC+AGG | 0.607861 | 5_3:+16222568 | None:intergenic |
| CATGGCTGCATCAGAAGTTG+AGG | 0.608793 | 5_3:-16224834 | Msa0802050:CDS |
| TATATGCCAGCCTTTCTCGT+TGG | 0.610096 | 5_3:-16220646 | Msa0802050:CDS |
| AATTCCAACGATCGATACGA+TGG | 0.612744 | 5_3:+16222557 | None:intergenic |
| CTGGAAGGAGCTCTACTGCA+TGG | 0.613679 | 5_3:+16222944 | None:intergenic |
| TCTGTTGTACAGTGGTGTGG+AGG | 0.613961 | 5_3:-16222800 | Msa0802050:CDS |
| GTAATACCAAGCCATACGAT+TGG | 0.614176 | 5_3:+16220071 | None:intergenic |
| GCAACCGTTGGATGGCAGCA+TGG | 0.616918 | 5_3:+16223570 | None:intergenic |
| TACCAAGCCATACGATTGGT+CGG | 0.617981 | 5_3:+16220075 | None:intergenic |
| CTGCGTTTATGCTGTGAAAG+CGG | 0.618723 | 5_3:-16225706 | Msa0802050:five_prime_UTR |
| GCAACGTGGAGACGGAGCAA+TGG | 0.620859 | 5_3:+16225477 | None:intergenic |
| CAATGCAAGAAGGTAGCGAT+AGG | 0.623678 | 5_3:+16221907 | None:intergenic |
| TGGCCGAATGGGTGATGCTG+CGG | 0.626072 | 5_3:-16220025 | Msa0802050:CDS |
| GAATACCTATCTTGCCGGTG+AGG | 0.627729 | 5_3:-16222404 | Msa0802050:CDS |
| TCATGCAAATGGAAGCCGCA+TGG | 0.629440 | 5_3:-16224852 | Msa0802050:CDS |
| CCAGAGCTTTGGAAACAAGG+AGG | 0.640698 | 5_3:-16222925 | Msa0802050:CDS |
| TAGGTTTCGATAGCATCCAT+CGG | 0.643956 | 5_3:+16221926 | None:intergenic |
| AGGGAGTCAGCCATGCGCAG+AGG | 0.644810 | 5_3:-16222384 | Msa0802050:CDS |
| AGACTGTGAGATGGGAGCAG+GGG | 0.650104 | 5_3:-16221994 | Msa0802050:CDS |
| CAACCTTTCATGCTCACCAG+AGG | 0.650944 | 5_3:+16224889 | None:intergenic |
| ATGGTGCTGAAACTTTCGAT+GGG | 0.651112 | 5_3:+16219964 | None:intergenic |
| TGGTTACATTAAGGGACGGA+GGG | 0.656962 | 5_3:+16219480 | None:intergenic |
| TTGCATTGGTTCAAGCCCAG+AGG | 0.660613 | 5_3:-16221892 | Msa0802050:CDS |
| GTGGTTACATTAAGGGACGG+AGG | 0.677636 | 5_3:+16219479 | None:intergenic |
| CAACTTCTGATGCAGCCATG+CGG | 0.681968 | 5_3:+16224837 | None:intergenic |
| TGGGTGGTTACATTAAGGGA+CGG | 0.682168 | 5_3:+16219476 | None:intergenic |
| ACAAGGAGGTTGCTATGACG+AGG | 0.683142 | 5_3:-16222911 | Msa0802050:CDS |
| ACCGTTGGATGGCAGCATGG+AGG | 0.687863 | 5_3:+16223573 | None:intergenic |
| CCGCTGCTTTGCGGTCTGCG+CGG | 0.698964 | 5_3:-16222135 | Msa0802050:CDS |
| ACCTGAACTGCTAAACTAGG+CGG | 0.708070 | 5_3:+16222772 | None:intergenic |
| GGGAAGTTGGAGTATCAGAG+AGG | 0.738735 | 5_3:-16223635 | Msa0802050:CDS |
| AACGACTAACCAAAGCAACG+TGG | 0.766662 | 5_3:+16225463 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATCATATTTTTTTTTAAA+AGG | + | chr5_3:16220489-16220508 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCTTTTCAAAAAT+AGG | + | chr5_3:16225351-16225370 | None:intergenic | 10.0% |
| !! | AAAAATAATGGTTTATGATA+GGG | - | chr5_3:16223814-16223833 | Msa0802050:intron | 15.0% |
| !!! | CAGTTGTTATAATTTTTTAA+GGG | + | chr5_3:16224077-16224096 | None:intergenic | 15.0% |
| !! | TTATTCCAAAAGTAATATAA+TGG | + | chr5_3:16224238-16224257 | None:intergenic | 15.0% |
| !!! | AGTTTTCTTTTAATATCTAA+CGG | + | chr5_3:16224265-16224284 | None:intergenic | 15.0% |
| !!! | ATTTATACCATTATGATTTT+TGG | - | chr5_3:16225268-16225287 | Msa0802050:intron | 15.0% |
| !! | GAACAAAAATAAAATCAAAT+GGG | + | chr5_3:16225705-16225724 | None:intergenic | 15.0% |
| !! | AATATTAACAACAACAACAT+AGG | - | chr5_3:16219566-16219585 | Msa0802050:three_prime_UTR | 20.0% |
| !! | ATTGCAAACAAAAAATCATT+GGG | + | chr5_3:16219785-16219804 | None:intergenic | 20.0% |
| !! | AATTGCAAACAAAAAATCAT+TGG | + | chr5_3:16219786-16219805 | None:intergenic | 20.0% |
| !!! | TGATTCTTTTTGTGTTATTA+TGG | - | chr5_3:16219826-16219845 | Msa0802050:three_prime_UTR | 20.0% |
| !! | AAACTCATTATTCATGAAAT+GGG | + | chr5_3:16219855-16219874 | None:intergenic | 20.0% |
| !! | AAAACTCATTATTCATGAAA+TGG | + | chr5_3:16219856-16219875 | None:intergenic | 20.0% |
| !!! | AAATTCTTTTAGACATTGTT+TGG | - | chr5_3:16219888-16219907 | Msa0802050:three_prime_UTR | 20.0% |
| !!! | ATAATGAATTGTTTGAGATT+CGG | - | chr5_3:16220615-16220634 | Msa0802050:CDS | 20.0% |
| !! | ATTCTTCTACACTAAAATTA+TGG | + | chr5_3:16220663-16220682 | None:intergenic | 20.0% |
| !!! | AATTTTAGTGTAGAAGAATT+TGG | - | chr5_3:16220664-16220683 | Msa0802050:CDS | 20.0% |
| !!! | CATTCATTAACTATTTCTTT+GGG | - | chr5_3:16220729-16220748 | Msa0802050:intron | 20.0% |
| !!! | ATTTTTAACACCAAACAATT+AGG | - | chr5_3:16221121-16221140 | Msa0802050:intron | 20.0% |
| !! | AAATTTATCACCTAATTGTT+TGG | + | chr5_3:16221134-16221153 | None:intergenic | 20.0% |
| !!! | GAATTTTTATTCTTTGTGAA+GGG | + | chr5_3:16221192-16221211 | None:intergenic | 20.0% |
| !! | CTTGAAAAACAAATTTATCA+GGG | + | chr5_3:16221407-16221426 | None:intergenic | 20.0% |
| !! | TCTTGAAAAACAAATTTATC+AGG | + | chr5_3:16221408-16221427 | None:intergenic | 20.0% |
| !! | AAAGTTTCAAAAGAAATCAT+GGG | + | chr5_3:16221481-16221500 | None:intergenic | 20.0% |
| !! | TAAAGTTTCAAAAGAAATCA+TGG | + | chr5_3:16221482-16221501 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTGAAACTTTAAC+AGG | - | chr5_3:16221484-16221503 | Msa0802050:intron | 20.0% |
| !! | ACTACATTATTACTATAAAG+AGG | + | chr5_3:16221872-16221891 | None:intergenic | 20.0% |
| !! | AAGAATCATTAAAAGCAAAA+TGG | + | chr5_3:16222451-16222470 | None:intergenic | 20.0% |
| !! | ATGATTCTTATAAGAAAGTT+TGG | - | chr5_3:16222462-16222481 | Msa0802050:CDS | 20.0% |
| !!! | TTCTTATCTGATTTTTGAAT+TGG | - | chr5_3:16222971-16222990 | Msa0802050:CDS | 20.0% |
| !! | GAAAAATAATGGTTTATGAT+AGG | - | chr5_3:16223813-16223832 | Msa0802050:intron | 20.0% |
| !! | CACTAATAGAAATTATGTAT+CGG | + | chr5_3:16224014-16224033 | None:intergenic | 20.0% |
| !!! | GCAGTTGTTATAATTTTTTA+AGG | + | chr5_3:16224078-16224097 | None:intergenic | 20.0% |
| !!! | ATGAACCATTATATTACTTT+TGG | - | chr5_3:16224230-16224249 | Msa0802050:intron | 20.0% |
| !!! | TTAATTTTTCAACTCTTTCT+AGG | - | chr5_3:16224439-16224458 | Msa0802050:intron | 20.0% |
| !! | AAGTTAATGAATTCGATATT+TGG | - | chr5_3:16224474-16224493 | Msa0802050:intron | 20.0% |
| !! | GTATTAACCAAAAATCATAA+TGG | + | chr5_3:16225278-16225297 | None:intergenic | 20.0% |
| !! | GAAAAAGTGAAACATTATTT+AGG | - | chr5_3:16225397-16225416 | Msa0802050:intron | 20.0% |
| !! | GGAACAAAAATAAAATCAAA+TGG | + | chr5_3:16225706-16225725 | None:intergenic | 20.0% |
| ! | TGAAATCAAACAAGATCTAA+GGG | + | chr5_3:16219644-16219663 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTAGCAGATCT+TGG | + | chr5_3:16219762-16219781 | None:intergenic | 25.0% |
| ! | AACTCATTATTCATGAAATG+GGG | + | chr5_3:16219854-16219873 | None:intergenic | 25.0% |
| !!! | TCATGAATAATGAGTTTTGT+TGG | - | chr5_3:16219858-16219877 | Msa0802050:three_prime_UTR | 25.0% |
| !! | AATTTCATAAACAAAGCGTT+TGG | + | chr5_3:16219969-16219988 | None:intergenic | 25.0% |
| ! | TGAAACTTATGTTAAAAGTG+TGG | - | chr5_3:16220212-16220231 | Msa0802050:CDS | 25.0% |
| ! | CCAAAGAAATAGTTAATGAA+TGG | + | chr5_3:16220731-16220750 | None:intergenic | 25.0% |
| !! | CCATTCATTAACTATTTCTT+TGG | - | chr5_3:16220728-16220747 | Msa0802050:intron | 25.0% |
| ! | AAAGACAATCCTCATAAAAA+GGG | + | chr5_3:16220966-16220985 | None:intergenic | 25.0% |
| ! | AAAAGACAATCCTCATAAAA+AGG | + | chr5_3:16220967-16220986 | None:intergenic | 25.0% |
| ! | CTATATTAGCTAAAGAAGAT+GGG | + | chr5_3:16221088-16221107 | None:intergenic | 25.0% |
| !! | GGAATTTTTATTCTTTGTGA+AGG | + | chr5_3:16221193-16221212 | None:intergenic | 25.0% |
| !!! | TTATGATTTGCTTACCTAAT+TGG | - | chr5_3:16221301-16221320 | Msa0802050:intron | 25.0% |
| ! | ATCAAGTTTCAAATCCAATT+AGG | + | chr5_3:16221318-16221337 | None:intergenic | 25.0% |
| ! | CATATTTGTACCAACTATTA+AGG | + | chr5_3:16221365-16221384 | None:intergenic | 25.0% |
| ! | AAATATGTAAAACCAATGCA+AGG | - | chr5_3:16221378-16221397 | Msa0802050:intron | 25.0% |
| ! | TTTATCCAGAAAATATGTTG+TGG | + | chr5_3:16221435-16221454 | None:intergenic | 25.0% |
| !! | CAACATATTTTCTGGATAAA+TGG | - | chr5_3:16221435-16221454 | Msa0802050:intron | 25.0% |
| ! | GTAAGATTAAGAAAGTAAAC+AGG | + | chr5_3:16221830-16221849 | None:intergenic | 25.0% |
| !! | TGTTGAGAAGATATTTTATC+AGG | - | chr5_3:16222146-16222165 | Msa0802050:CDS | 25.0% |
| !! | GTTGAGAAGATATTTTATCA+GGG | - | chr5_3:16222147-16222166 | Msa0802050:CDS | 25.0% |
| ! | TTCAAATTGCATTGCTAAAA+CGG | + | chr5_3:16222562-16222581 | None:intergenic | 25.0% |
| !! | TTATCTGATTTTTGAATTGG+CGG | - | chr5_3:16222974-16222993 | Msa0802050:CDS | 25.0% |
| !! | ATCTTACCTTTGAACTATTT+TGG | + | chr5_3:16223310-16223329 | None:intergenic | 25.0% |
| !! | CATTCACACTATTTTGTATT+TGG | + | chr5_3:16223705-16223724 | None:intergenic | 25.0% |
| ! | GTTGTTGCGATTTAAAAAAT+GGG | - | chr5_3:16223885-16223904 | Msa0802050:intron | 25.0% |
| ! | CGATACATAATTTCTATTAG+TGG | - | chr5_3:16224012-16224031 | Msa0802050:intron | 25.0% |
| ! | AAGCTTAAGAACAACATAAA+TGG | + | chr5_3:16224303-16224322 | None:intergenic | 25.0% |
| ! | TATCCTTTCTTTCTTTCTTT+CGG | - | chr5_3:16224341-16224360 | Msa0802050:intron | 25.0% |
| !! | CAGTATCTCAAATTTTCTTT+TGG | + | chr5_3:16224388-16224407 | None:intergenic | 25.0% |
| !! | CAAAAGAAAATTTGAGATAC+TGG | - | chr5_3:16224386-16224405 | Msa0802050:intron | 25.0% |
| ! | AATTCCGAATATTCAAAGTA+TGG | + | chr5_3:16225217-16225236 | None:intergenic | 25.0% |
| ! | TACTTTGAATATTCGGAATT+TGG | - | chr5_3:16225217-16225236 | Msa0802050:intron | 25.0% |
| !!! | TTTTTGGTTAATACATCATC+TGG | - | chr5_3:16225284-16225303 | Msa0802050:intron | 25.0% |
| !!! | TTTTGGTTAATACATCATCT+GGG | - | chr5_3:16225285-16225304 | Msa0802050:intron | 25.0% |
| ! | AAAAATTGTCATCACAAACT+AGG | - | chr5_3:16225368-16225387 | Msa0802050:intron | 25.0% |
| ! | TTTAGGAAATAAAGTGAGAA+TGG | - | chr5_3:16225414-16225433 | Msa0802050:intron | 25.0% |
| !!! | CAATTATGTGCTTAGTTTTT+TGG | - | chr5_3:16225561-16225580 | Msa0802050:five_prime_UTR | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr5_3:16225702-16225721 | None:intergenic | 25.0% |
| GTGAAATCAAACAAGATCTA+AGG | + | chr5_3:16219645-16219664 | None:intergenic | 30.0% | |
| AAATTAGCAGATCTTGGAAA+TGG | + | chr5_3:16219756-16219775 | None:intergenic | 30.0% | |
| ! | AATTTTGTTCTGTGCTTGTT+TGG | - | chr5_3:16219985-16220004 | Msa0802050:CDS | 30.0% |
| TGAGTTTGATAAAATCATGG+TGG | - | chr5_3:16220016-16220035 | Msa0802050:CDS | 30.0% | |
| ! | TTCCAAAATGTAGCTTTTGT+CGG | - | chr5_3:16220058-16220077 | Msa0802050:CDS | 30.0% |
| TTTGAATGATGAATTTGCAG+TGG | - | chr5_3:16220159-16220178 | Msa0802050:CDS | 30.0% | |
| !! | TTTTAAAAGGCAACCTAGAA+GGG | + | chr5_3:16220476-16220495 | None:intergenic | 30.0% |
| !! | TTTTTAAAAGGCAACCTAGA+AGG | + | chr5_3:16220477-16220496 | None:intergenic | 30.0% |
| TCCATTATGTTGTCTTACAA+TGG | - | chr5_3:16220537-16220556 | Msa0802050:CDS | 30.0% | |
| TCCATTGTAAGACAACATAA+TGG | + | chr5_3:16220541-16220560 | None:intergenic | 30.0% | |
| TCAATTGATTGCTCCAAAAT+GGG | + | chr5_3:16220566-16220585 | None:intergenic | 30.0% | |
| TTCAATTGATTGCTCCAAAA+TGG | + | chr5_3:16220567-16220586 | None:intergenic | 30.0% | |
| ! | TTGAACATATTTTCAGCAGA+AGG | + | chr5_3:16220703-16220722 | None:intergenic | 30.0% |
| AGAAATAGTTAATGAATGGC+AGG | + | chr5_3:16220727-16220746 | None:intergenic | 30.0% | |
| !!! | AGCCCAAATTTTTTGTTTGA+GGG | - | chr5_3:16220813-16220832 | Msa0802050:intron | 30.0% |
| TGCCCTCAAACAAAAAATTT+GGG | + | chr5_3:16220818-16220837 | None:intergenic | 30.0% | |
| TTGCCCTCAAACAAAAAATT+TGG | + | chr5_3:16220819-16220838 | None:intergenic | 30.0% | |
| !!! | ATGAGGATTGTCTTTTTTGA+TGG | - | chr5_3:16220971-16220990 | Msa0802050:intron | 30.0% |
| !!! | CTTTTTTGATGGTATGAGTT+TGG | - | chr5_3:16220982-16221001 | Msa0802050:intron | 30.0% |
| GCTATATTAGCTAAAGAAGA+TGG | + | chr5_3:16221089-16221108 | None:intergenic | 30.0% | |
| AAAGTTTACACTCATGAACA+TGG | + | chr5_3:16221214-16221233 | None:intergenic | 30.0% | |
| AAGAAACGAACCTTAATAGT+TGG | - | chr5_3:16221352-16221371 | Msa0802050:intron | 30.0% | |
| ! | ATCTTCCACAACATATTTTC+TGG | - | chr5_3:16221427-16221446 | Msa0802050:intron | 30.0% |
| AGATTAAGAAAGTAAACAGG+TGG | + | chr5_3:16221827-16221846 | None:intergenic | 30.0% | |
| TTTCTTAACTTAGTACCCAT+AGG | - | chr5_3:16221985-16222004 | Msa0802050:CDS | 30.0% | |
| TTGAACAGCAATCATTATCA+AGG | + | chr5_3:16222314-16222333 | None:intergenic | 30.0% | |
| CTTATAAGAAAGTTTGGTCA+TGG | - | chr5_3:16222468-16222487 | Msa0802050:CDS | 30.0% | |
| TTGGTCATGGTAAGATAAAA+TGG | - | chr5_3:16222481-16222500 | Msa0802050:CDS | 30.0% | |
| TGGTCATGGTAAGATAAAAT+GGG | - | chr5_3:16222482-16222501 | Msa0802050:CDS | 30.0% | |
| CAGCTAATAATAACGATGTA+AGG | + | chr5_3:16222719-16222738 | None:intergenic | 30.0% | |
| GTCTTACCAAAATAGTTCAA+AGG | - | chr5_3:16223301-16223320 | Msa0802050:intron | 30.0% | |
| CATCTACTTATCTTCTTTGA+GGG | - | chr5_3:16223335-16223354 | Msa0802050:intron | 30.0% | |
| TATAAAACTACAGACAAGCT+TGG | + | chr5_3:16223522-16223541 | None:intergenic | 30.0% | |
| TACAAAATAGTGTGAATGCT+AGG | - | chr5_3:16223707-16223726 | Msa0802050:intron | 30.0% | |
| GGTTGTTGCGATTTAAAAAA+TGG | - | chr5_3:16223884-16223903 | Msa0802050:intron | 30.0% | |
| AATTCTTAACATGTGCCTTA+AGG | - | chr5_3:16224035-16224054 | Msa0802050:intron | 30.0% | |
| ATTCTTAACATGTGCCTTAA+GGG | - | chr5_3:16224036-16224055 | Msa0802050:intron | 30.0% | |
| !! | TAACAACTGCTTTTCAGAAA+AGG | - | chr5_3:16224088-16224107 | Msa0802050:intron | 30.0% |
| !! | AACAACTGCTTTTCAGAAAA+GGG | - | chr5_3:16224089-16224108 | Msa0802050:intron | 30.0% |
| GAAAGAAAGAAAGGATACAT+CGG | + | chr5_3:16224338-16224357 | None:intergenic | 30.0% | |
| AAACCGAAAGAAAGAAAGAA+AGG | + | chr5_3:16224347-16224366 | None:intergenic | 30.0% | |
| ! | CTCAAATTTTCTTTTGGTGA+GGG | + | chr5_3:16224382-16224401 | None:intergenic | 30.0% |
| ! | TCTCAAATTTTCTTTTGGTG+AGG | + | chr5_3:16224383-16224402 | None:intergenic | 30.0% |
| AATGAATTCGATATTTGGCA+TGG | - | chr5_3:16224479-16224498 | Msa0802050:intron | 30.0% | |
| GAAAAACTTAAACAGCACAA+AGG | + | chr5_3:16224624-16224643 | None:intergenic | 30.0% | |
| ! | TCATAAGCACTTTTCTGATA+TGG | + | chr5_3:16224699-16224718 | None:intergenic | 30.0% |
| !! | AGTTGATAATTCTTAGCTCT+TGG | + | chr5_3:16224827-16224846 | None:intergenic | 30.0% |
| ! | CTTTTATACTCTTCTATACC+AGG | - | chr5_3:16224880-16224899 | Msa0802050:CDS | 30.0% |
| !! | ATACCAGGTATTTTGTTTGA+AGG | - | chr5_3:16224895-16224914 | Msa0802050:CDS | 30.0% |
| ! | TTAAGATTTTGCTTGGAACA+TGG | + | chr5_3:16224981-16225000 | None:intergenic | 30.0% |
| AGTGCTTCGATTCATAAAAT+GGG | - | chr5_3:16225003-16225022 | Msa0802050:intron | 30.0% | |
| AGCACCATACTTTGAATATT+CGG | - | chr5_3:16225210-16225229 | Msa0802050:intron | 30.0% | |
| TGAATATTCGGAATTTGGAA+TGG | - | chr5_3:16225222-16225241 | Msa0802050:intron | 30.0% | |
| AATGGTATAAATCTCACTGA+AGG | + | chr5_3:16225260-16225279 | None:intergenic | 30.0% | |
| ! | GACACAATAGAAACAGTTTT+AGG | - | chr5_3:16225316-16225335 | Msa0802050:intron | 30.0% |
| GAGTTGTAAAGAACTTTGAT+CGG | - | chr5_3:16225439-16225458 | Msa0802050:intron | 30.0% | |
| !!! | GTTTTTTGGCTAGATTTACA+AGG | - | chr5_3:16225575-16225594 | Msa0802050:five_prime_UTR | 30.0% |
| AAAAGTTTCTCCATTTCCCA+CGG | + | chr5_3:16219922-16219941 | None:intergenic | 35.0% | |
| CGGTGAGTTTGATAAAATCA+TGG | - | chr5_3:16220013-16220032 | Msa0802050:CDS | 35.0% | |
| TTGATAAAATCATGGTGGCA+AGG | - | chr5_3:16220021-16220040 | Msa0802050:CDS | 35.0% | |
| ! | TTCCGACAAAAGCTACATTT+TGG | + | chr5_3:16220063-16220082 | None:intergenic | 35.0% |
| TGTCAATTCAAACATGCACT+TGG | - | chr5_3:16220117-16220136 | Msa0802050:CDS | 35.0% | |
| TTTAAAAGGCAACCTAGAAG+GGG | + | chr5_3:16220475-16220494 | None:intergenic | 35.0% | |
| ! | CTTACAATGGATACCCATTT+TGG | - | chr5_3:16220550-16220569 | Msa0802050:CDS | 35.0% |
| GAGCAATCAATTGAAACAAG+TGG | - | chr5_3:16220572-16220591 | Msa0802050:CDS | 35.0% | |
| ATCAATTGAAACAAGTGGCA+AGG | - | chr5_3:16220577-16220596 | Msa0802050:CDS | 35.0% | |
| ! | ATGAATTGTTTGAGATTCGG+AGG | - | chr5_3:16220618-16220637 | Msa0802050:CDS | 35.0% |
| ! | TTGTAGAAGTTTTTGTCCTC+AGG | - | chr5_3:16220752-16220771 | Msa0802050:intron | 35.0% |
| !!! | CAGCCCAAATTTTTTGTTTG+AGG | - | chr5_3:16220812-16220831 | Msa0802050:intron | 35.0% |
| !! | GAAGGGAGTACTATACTATA+AGG | + | chr5_3:16221175-16221194 | None:intergenic | 35.0% |
| TTAAGGTTCGTTTCTTCACT+TGG | + | chr5_3:16221348-16221367 | None:intergenic | 35.0% | |
| TGAAACTTTAACAGGAAGCA+AGG | - | chr5_3:16221492-16221511 | Msa0802050:intron | 35.0% | |
| GAAACTTTAACAGGAAGCAA+GGG | - | chr5_3:16221493-16221512 | Msa0802050:intron | 35.0% | |
| TATCAGAGAGGTAATGTAGA+AGG | - | chr5_3:16221536-16221555 | Msa0802050:intron | 35.0% | |
| GAAAAATCGCCTGTCAAAAA+AGG | - | chr5_3:16221626-16221645 | Msa0802050:intron | 35.0% | |
| !! | AGACTTGGCTTTTAAGTAGA+TGG | + | chr5_3:16221714-16221733 | None:intergenic | 35.0% |
| !!! | ATACCTGATTTTCAAGTGGA+CGG | - | chr5_3:16222171-16222190 | Msa0802050:CDS | 35.0% |
| ! | AAGGTTCCATTGACTAAGAA+GGG | + | chr5_3:16222295-16222314 | None:intergenic | 35.0% |
| !!! | GTTGTTTTTCTGTTGTACAG+TGG | - | chr5_3:16222351-16222370 | Msa0802050:CDS | 35.0% |
| GCCTAAAAATAATCTCGAAG+AGG | - | chr5_3:16222425-16222444 | Msa0802050:CDS | 35.0% | |
| !! | GCCTCTTCGAGATTATTTTT+AGG | + | chr5_3:16222429-16222448 | None:intergenic | 35.0% |
| AAAATGGGATCCTTCAATCA+TGG | - | chr5_3:16222497-16222516 | Msa0802050:CDS | 35.0% | |
| ! | ATACGGAAAGTGCAAAAGTT+AGG | + | chr5_3:16222527-16222546 | None:intergenic | 35.0% |
| AATAACGATGTAAGGTCATC+TGG | + | chr5_3:16222711-16222730 | None:intergenic | 35.0% | |
| TGGTCCAAATGAGCATTTAA+AGG | - | chr5_3:16222815-16222834 | Msa0802050:CDS | 35.0% | |
| GGTCCAAATGAGCATTTAAA+GGG | - | chr5_3:16222816-16222835 | Msa0802050:CDS | 35.0% | |
| ACACCCTTTAAATGCTCATT+TGG | + | chr5_3:16222822-16222841 | None:intergenic | 35.0% | |
| ! | ATTGCTTGCTCTGATTTTGT+CGG | - | chr5_3:16223091-16223110 | Msa0802050:intron | 35.0% |
| TTTAGATCAGACTGTGAGAT+GGG | - | chr5_3:16223157-16223176 | Msa0802050:intron | 35.0% | |
| !!! | ACTATTTTGGTAAGACCCAA+AGG | + | chr5_3:16223297-16223316 | None:intergenic | 35.0% |
| CCTCAAAGAAGATAAGTAGA+TGG | + | chr5_3:16223337-16223356 | None:intergenic | 35.0% | |
| CCATCTACTTATCTTCTTTG+AGG | - | chr5_3:16223334-16223353 | Msa0802050:intron | 35.0% | |
| ATGTATACCAAGGCTAACAT+AGG | + | chr5_3:16223595-16223614 | None:intergenic | 35.0% | |
| !! | CATTATTTTTCACTGCATCC+AGG | + | chr5_3:16223804-16223823 | None:intergenic | 35.0% |
| CTGGATGCAGTGAAAAATAA+TGG | - | chr5_3:16223802-16223821 | Msa0802050:intron | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr5_3:16224053-16224072 | None:intergenic | 35.0% |
| !! | ACAACTGCTTTTCAGAAAAG+GGG | - | chr5_3:16224090-16224109 | Msa0802050:intron | 35.0% |
| ! | CAAAACAGCTCTATTTGTTG+AGG | + | chr5_3:16224121-16224140 | None:intergenic | 35.0% |
| !! | CTGTTTTGTTACTTCTCTCT+TGG | - | chr5_3:16224133-16224152 | Msa0802050:intron | 35.0% |
| TGCTGAAATCTGTTTGCAAA+AGG | - | chr5_3:16224541-16224560 | Msa0802050:intron | 35.0% | |
| !! | ATCAGAAAAGTGCTTATGAC+TGG | - | chr5_3:16224700-16224719 | Msa0802050:intron | 35.0% |
| ! | ATTTTGCTTGGAACATGGTT+TGG | + | chr5_3:16224976-16224995 | None:intergenic | 35.0% |
| ! | GCACTCATTAAGATTTTGCT+TGG | + | chr5_3:16224988-16225007 | None:intergenic | 35.0% |
| GAGTGCTTCGATTCATAAAA+TGG | - | chr5_3:16225002-16225021 | Msa0802050:intron | 35.0% | |
| ! | GATTCATAAAATGGGCTCAA+AGG | - | chr5_3:16225011-16225030 | Msa0802050:intron | 35.0% |
| GGATTAATTCACAAGCATGA+TGG | - | chr5_3:16225114-16225133 | Msa0802050:intron | 35.0% | |
| TAATACATCATCTGGGTTCA+AGG | - | chr5_3:16225292-16225311 | Msa0802050:intron | 35.0% | |
| GAATCTATACTCTTGCAACA+TGG | + | chr5_3:16225532-16225551 | None:intergenic | 35.0% | |
| GCTAGATTTACAAGGCTTTA+AGG | - | chr5_3:16225583-16225602 | Msa0802050:five_prime_UTR | 35.0% | |
| AATTTACATAACAGCACTGC+TGG | + | chr5_3:16225645-16225664 | None:intergenic | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | + | chr5_3:16225690-16225709 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr5_3:16225691-16225710 | None:intergenic | 35.0% | |
| GAACAGAAACGTAAGAGTAG+AGG | + | chr5_3:16219483-16219502 | None:intergenic | 40.0% | |
| AACAAGATCTAAGGGACACT+TGG | + | chr5_3:16219636-16219655 | None:intergenic | 40.0% | |
| ! | TCTGTGCTTGTTTGGAATCA+CGG | - | chr5_3:16219993-16220012 | Msa0802050:CDS | 40.0% |
| ! | TGTAGCTTTTGTCGGAATCA+CGG | - | chr5_3:16220066-16220085 | Msa0802050:CDS | 40.0% |
| ! | TGAATTTGCAGTGGCATTGA+AGG | - | chr5_3:16220168-16220187 | Msa0802050:CDS | 40.0% |
| ! | GAATTTGCAGTGGCATTGAA+GGG | - | chr5_3:16220169-16220188 | Msa0802050:CDS | 40.0% |
| ! | TTAAAAGTGTGGTTGTGTGC+AGG | - | chr5_3:16220223-16220242 | Msa0802050:CDS | 40.0% |
| GTTAGAGAGGTTCATGCAAA+TGG | - | chr5_3:16220296-16220315 | Msa0802050:intron | 40.0% | |
| ! | AGGGTTGTCACTCAATTTTG+AGG | - | chr5_3:16220397-16220416 | Msa0802050:intron | 40.0% |
| ACCTAGAAGGGGAAAAAACA+TGG | + | chr5_3:16220464-16220483 | None:intergenic | 40.0% | |
| ! | TTTTTGTCCTCAGGCTGTTT+GGG | - | chr5_3:16220761-16220780 | Msa0802050:intron | 40.0% |
| TCAAACAGTCTTTCTGCATG+CGG | - | chr5_3:16220868-16220887 | Msa0802050:intron | 40.0% | |
| ! | TGATGGTATGAGTTTGGAGT+TGG | - | chr5_3:16220988-16221007 | Msa0802050:intron | 40.0% |
| TTATCAGGGATACCTTGCAT+TGG | + | chr5_3:16221393-16221412 | None:intergenic | 40.0% | |
| !! | GGCGATTTTTCAGAAAACGA+GGG | + | chr5_3:16221617-16221636 | None:intergenic | 40.0% |
| !! | AGGCGATTTTTCAGAAAACG+AGG | + | chr5_3:16221618-16221637 | None:intergenic | 40.0% |
| AGCCAAGTCTCAACAAAAAC+TGG | - | chr5_3:16221724-16221743 | Msa0802050:intron | 40.0% | |
| GCCAAGTCTCAACAAAAACT+GGG | - | chr5_3:16221725-16221744 | Msa0802050:intron | 40.0% | |
| CCAAGTCTCAACAAAAACTG+GGG | - | chr5_3:16221726-16221745 | Msa0802050:intron | 40.0% | |
| CAAAAACTGGGGAAATTTGC+TGG | - | chr5_3:16221737-16221756 | Msa0802050:intron | 40.0% | |
| ! | TGTCAGTGTTGTGTTGATGT+CGG | + | chr5_3:16221938-16221957 | None:intergenic | 40.0% |
| TACCCATAGGTGTCAGTTTA+GGG | - | chr5_3:16221998-16222017 | Msa0802050:CDS | 40.0% | |
| AACCCTAAACTGACACCTAT+GGG | + | chr5_3:16222003-16222022 | None:intergenic | 40.0% | |
| TTACCGTCCACTTGAAAATC+AGG | + | chr5_3:16222177-16222196 | None:intergenic | 40.0% | |
| ! | CAAGGTTCCATTGACTAAGA+AGG | + | chr5_3:16222296-16222315 | None:intergenic | 40.0% |
| ! | TTTTCTGTTGTACAGTGGTG+TGG | - | chr5_3:16222356-16222375 | Msa0802050:CDS | 40.0% |
| TCAACCTGAACTGCTAAACT+AGG | + | chr5_3:16222393-16222412 | None:intergenic | 40.0% | |
| !! | AGTTTAGCAGTTCAGGTTGA+TGG | - | chr5_3:16222393-16222412 | Msa0802050:CDS | 40.0% |
| AACGGAAGTTTGGCTACATA+CGG | + | chr5_3:16222544-16222563 | None:intergenic | 40.0% | |
| GCATTGCTAAAACGGAAGTT+TGG | + | chr5_3:16222554-16222573 | None:intergenic | 40.0% | |
| CAATTTGAAGACTTGATGCC+TGG | - | chr5_3:16222573-16222592 | Msa0802050:CDS | 40.0% | |
| ! | TATACCATCGTATCGATCGT+TGG | - | chr5_3:16222598-16222617 | Msa0802050:CDS | 40.0% |
| AATTCCAACGATCGATACGA+TGG | + | chr5_3:16222605-16222624 | None:intergenic | 40.0% | |
| !!! | CAAAGCACTGACATTTTGTC+CGG | + | chr5_3:16222652-16222671 | None:intergenic | 40.0% |
| ! | TCAGTGCTTTGAATCTGCTA+AGG | - | chr5_3:16222661-16222680 | Msa0802050:CDS | 40.0% |
| TGTGAGAATACCTATCTTGC+CGG | - | chr5_3:16222750-16222769 | Msa0802050:CDS | 40.0% | |
| ATTGGAAGAGGCAACTAGAT+TGG | - | chr5_3:16222938-16222957 | Msa0802050:CDS | 40.0% | |
| CATTTCTTCAACGAAACTGG+TGG | - | chr5_3:16223047-16223066 | Msa0802050:CDS | 40.0% | |
| AAGATTTCCAGAAGCTGAAG+TGG | - | chr5_3:16223121-16223140 | Msa0802050:intron | 40.0% | |
| CTTTAGATCAGACTGTGAGA+TGG | - | chr5_3:16223156-16223175 | Msa0802050:intron | 40.0% | |
| ! | TTCGCTTTAAGCTTAAGCAG+AGG | + | chr5_3:16223191-16223210 | None:intergenic | 40.0% |
| !!! | AGCATCCATCGGTTTTGATT+GGG | + | chr5_3:16223225-16223244 | None:intergenic | 40.0% |
| !!! | TAGCATCCATCGGTTTTGAT+TGG | + | chr5_3:16223226-16223245 | None:intergenic | 40.0% |
| TAGGTTTCGATAGCATCCAT+CGG | + | chr5_3:16223236-16223255 | None:intergenic | 40.0% | |
| TAGTAGCTCAATAAACGTCC+TGG | - | chr5_3:16223473-16223492 | Msa0802050:CDS | 40.0% | |
| AGTAGCTCAATAAACGTCCT+GGG | - | chr5_3:16223474-16223493 | Msa0802050:CDS | 40.0% | |
| GGGAATTGCATTTCCTCATA+GGG | - | chr5_3:16223496-16223515 | Msa0802050:CDS | 40.0% | |
| ! | AATCTTGCCTATGTTAGCCT+TGG | - | chr5_3:16223585-16223604 | Msa0802050:CDS | 40.0% |
| !! | TTAGCCTTGGTATACATTGC+CGG | - | chr5_3:16223598-16223617 | Msa0802050:CDS | 40.0% |
| TAAAAGGAGAGGGTTGTGTT+AGG | - | chr5_3:16223634-16223653 | Msa0802050:CDS | 40.0% | |
| ! | AAGTGTTACGTTGGTTGTTG+AGG | + | chr5_3:16223660-16223679 | None:intergenic | 40.0% |
| ! | GATTCGACAAAGTGTTACGT+TGG | + | chr5_3:16223669-16223688 | None:intergenic | 40.0% |
| AGTGCAGTGTCTAATGAGAA+AGG | - | chr5_3:16223763-16223782 | Msa0802050:intron | 40.0% | |
| GTGCAGTGTCTAATGAGAAA+GGG | - | chr5_3:16223764-16223783 | Msa0802050:intron | 40.0% | |
| AAAGCTTTACCCCACTATGT+GGG | + | chr5_3:16223864-16223883 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr5_3:16223908-16223927 | Msa0802050:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr5_3:16223909-16223928 | Msa0802050:intron | 40.0% |
| ATGCTTAACATGTGCCCTAA+GGG | + | chr5_3:16223926-16223945 | None:intergenic | 40.0% | |
| AATGCTTAACATGTGCCCTA+AGG | + | chr5_3:16223927-16223946 | None:intergenic | 40.0% | |
| GGGCACATGTTAAGCATTAA+TGG | - | chr5_3:16223929-16223948 | Msa0802050:intron | 40.0% | |
| GAAAGAAAGGATACATCGGT+AGG | + | chr5_3:16224334-16224353 | None:intergenic | 40.0% | |
| ! | ATTTTCTTTTGGTGAGGGAG+AGG | + | chr5_3:16224377-16224396 | None:intergenic | 40.0% |
| ATAACGCACATATCTAGCAC+TGG | + | chr5_3:16224726-16224745 | None:intergenic | 40.0% | |
| TTGTAAAGCCACATTCATCG+AGG | - | chr5_3:16224773-16224792 | Msa0802050:CDS | 40.0% | |
| CGTCCTTCAAACAAAATACC+TGG | + | chr5_3:16224901-16224920 | None:intergenic | 40.0% | |
| !! | GGTATTTTGTTTGAAGGACG+CGG | - | chr5_3:16224901-16224920 | Msa0802050:exon | 40.0% |
| !! | GTATTTTGTTTGAAGGACGC+GGG | - | chr5_3:16224902-16224921 | Msa0802050:exon | 40.0% |
| GTAATACCAAGCCATACGAT+TGG | + | chr5_3:16225091-16225110 | None:intergenic | 40.0% | |
| !! | TCGTATGGCTTGGTATTACT+TGG | - | chr5_3:16225092-16225111 | Msa0802050:intron | 40.0% |
| !! | CGTATGGCTTGGTATTACTT+GGG | - | chr5_3:16225093-16225112 | Msa0802050:intron | 40.0% |
| ! | ATGGTGCTGAAACTTTCGAT+GGG | + | chr5_3:16225198-16225217 | None:intergenic | 40.0% |
| ! | TATGGTGCTGAAACTTTCGA+TGG | + | chr5_3:16225199-16225218 | None:intergenic | 40.0% |
| !! | GATCGGCAGAGATTTTAATG+TGG | - | chr5_3:16225456-16225475 | Msa0802050:intron | 40.0% |
| CTGCGTTTATGCTGTGAAAG+CGG | - | chr5_3:16219453-16219472 | Msa0802050:three_prime_UTR | 45.0% | |
| CACTTGGTTGTGATCAGCAT+TGG | + | chr5_3:16219620-16219639 | None:intergenic | 45.0% | |
| TAACCAAAGCAACGTGGAGA+CGG | + | chr5_3:16219693-16219712 | None:intergenic | 45.0% | |
| AACGACTAACCAAAGCAACG+TGG | + | chr5_3:16219699-16219718 | None:intergenic | 45.0% | |
| ATTGTTTGGATCCGTTACCG+TGG | - | chr5_3:16219902-16219921 | Msa0802050:three_prime_UTR | 45.0% | |
| TTGTTTGGATCCGTTACCGT+GGG | - | chr5_3:16219903-16219922 | Msa0802050:three_prime_UTR | 45.0% | |
| TTCTCCATTTCCCACGGTAA+CGG | + | chr5_3:16219916-16219935 | None:intergenic | 45.0% | |
| ! | AGTGGCATTGAAGGGTCAAA+GGG | - | chr5_3:16220177-16220196 | Msa0802050:CDS | 45.0% |
| AGATGAATCATGGAGTCCTC+TGG | - | chr5_3:16220254-16220273 | Msa0802050:CDS | 45.0% | |
| TGGTGAGCATGAAAGGTTGT+CGG | - | chr5_3:16220274-16220293 | Msa0802050:intron | 45.0% | |
| ! | TGAAAGGTTGTCGGTTAGAG+AGG | - | chr5_3:16220283-16220302 | Msa0802050:intron | 45.0% |
| CAGAATCTGCATTGCGAGAA+GGG | - | chr5_3:16220378-16220397 | Msa0802050:intron | 45.0% | |
| AGAAGGGGAAAAAACATGGC+AGG | + | chr5_3:16220460-16220479 | None:intergenic | 45.0% | |
| !!! | GCCATGTTTTTTCCCCTTCT+AGG | - | chr5_3:16220460-16220479 | Msa0802050:intron | 45.0% |
| ! | TTTGAGATTCGGAGGACACA+AGG | - | chr5_3:16220626-16220645 | Msa0802050:CDS | 45.0% |
| TCAGCAGAAGGTTCAGAGAA+AGG | + | chr5_3:16220691-16220710 | None:intergenic | 45.0% | |
| ! | GTTTTTGTCCTCAGGCTGTT+TGG | - | chr5_3:16220760-16220779 | Msa0802050:intron | 45.0% |
| CAAACAGTCTTTCTGCATGC+GGG | - | chr5_3:16220869-16220888 | Msa0802050:intron | 45.0% | |
| ! | ACCAGGCAACCCTTTTTATG+AGG | - | chr5_3:16220954-16220973 | Msa0802050:intron | 45.0% |
| TCCTCATAAAAAGGGTTGCC+TGG | + | chr5_3:16220958-16220977 | None:intergenic | 45.0% | |
| TTGGAGTTGGCTGAGAAATG+AGG | - | chr5_3:16221001-16221020 | Msa0802050:intron | 45.0% | |
| GTGCTCTTCGTGTCTTTGAT+GGG | - | chr5_3:16221558-16221577 | Msa0802050:intron | 45.0% | |
| !!! | CGAGTACGACCTTTTTTGAC+AGG | + | chr5_3:16221638-16221657 | None:intergenic | 45.0% |
| ! | CCCCAGTTTTTGTTGAGACT+TGG | + | chr5_3:16221729-16221748 | None:intergenic | 45.0% |
| GTACCCATAGGTGTCAGTTT+AGG | - | chr5_3:16221997-16222016 | Msa0802050:CDS | 45.0% | |
| CAACCCTAAACTGACACCTA+TGG | + | chr5_3:16222004-16222023 | None:intergenic | 45.0% | |
| !! | GGGCATACCTGATTTTCAAG+TGG | - | chr5_3:16222167-16222186 | Msa0802050:CDS | 45.0% |
| !! | CTTGTTTCCAAAGCTCTGGA+AGG | + | chr5_3:16222233-16222252 | None:intergenic | 45.0% |
| !! | CTTCCAGAGCTTTGGAAACA+AGG | - | chr5_3:16222231-16222250 | Msa0802050:CDS | 45.0% |
| ACGAGGCAATCTCTGCTTAT+AGG | - | chr5_3:16222265-16222284 | Msa0802050:CDS | 45.0% | |
| ACCTGAACTGCTAAACTAGG+CGG | + | chr5_3:16222390-16222409 | None:intergenic | 45.0% | |
| GTTAGGTGCTCCATGATTGA+AGG | + | chr5_3:16222510-16222529 | None:intergenic | 45.0% | |
| TCGATACGATGGTATACTCC+AGG | + | chr5_3:16222594-16222613 | None:intergenic | 45.0% | |
| GCTTTATGTCATTGTGCTGC+CGG | - | chr5_3:16222630-16222649 | Msa0802050:CDS | 45.0% | |
| AATACCTATCTTGCCGGTGA+GGG | - | chr5_3:16222756-16222775 | Msa0802050:CDS | 45.0% | |
| AGGGCAATCAAGAATGCTCA+TGG | - | chr5_3:16222795-16222814 | Msa0802050:CDS | 45.0% | |
| TTCCAATGACTCCAGAGCTT+TGG | + | chr5_3:16222925-16222944 | None:intergenic | 45.0% | |
| CGGCATTTCTTCAACGAAAC+TGG | - | chr5_3:16223044-16223063 | Msa0802050:CDS | 45.0% | |
| CAATGCAAGAAGGTAGCGAT+AGG | + | chr5_3:16223255-16223274 | None:intergenic | 45.0% | |
| CTATCGCTACCTTCTTGCAT+TGG | - | chr5_3:16223253-16223272 | Msa0802050:intron | 45.0% | |
| AAGCCCAGAGGAAATCCTTT+GGG | - | chr5_3:16223279-16223298 | Msa0802050:intron | 45.0% | |
| AGACCCAAAGGATTTCCTCT+GGG | + | chr5_3:16223285-16223304 | None:intergenic | 45.0% | |
| AAGACCCAAAGGATTTCCTC+TGG | + | chr5_3:16223286-16223305 | None:intergenic | 45.0% | |
| GTAGCTCAATAAACGTCCTG+GGG | - | chr5_3:16223475-16223494 | Msa0802050:CDS | 45.0% | |
| TAGCTCAATAAACGTCCTGG+GGG | - | chr5_3:16223476-16223495 | Msa0802050:CDS | 45.0% | |
| GGGGAATTGCATTTCCTCAT+AGG | - | chr5_3:16223495-16223514 | Msa0802050:CDS | 45.0% | |
| CTATACAGCGCATTGCTTCT+GGG | + | chr5_3:16223739-16223758 | None:intergenic | 45.0% | |
| AAGCTTTACCCCACTATGTG+GGG | + | chr5_3:16223863-16223882 | None:intergenic | 45.0% | |
| CAAAGCTTTACCCCACTATG+TGG | + | chr5_3:16223865-16223884 | None:intergenic | 45.0% | |
| ! | CACATAGTGGGGTAAAGCTT+TGG | - | chr5_3:16223863-16223882 | Msa0802050:intron | 45.0% |
| TATATGCCAGCCTTTCTCGT+TGG | - | chr5_3:16224513-16224532 | Msa0802050:intron | 45.0% | |
| ! | AGAGTACTCCTTCAACTCTC+TGG | + | chr5_3:16224567-16224586 | None:intergenic | 45.0% |
| ! | GCAGAAATTTTGCGCACTGA+AGG | - | chr5_3:16224587-16224606 | Msa0802050:intron | 45.0% |
| ! | ATAGTAGCGTTGAGAGCTTC+TGG | + | chr5_3:16224934-16224953 | None:intergenic | 45.0% |
| AATCGAACCGACCAATCGTA+TGG | - | chr5_3:16225077-16225096 | Msa0802050:intron | 45.0% | |
| TACCAAGCCATACGATTGGT+CGG | + | chr5_3:16225087-16225106 | None:intergenic | 45.0% | |
| GGGATCAAATTCTTCCAGCA+TGG | + | chr5_3:16225178-16225197 | None:intergenic | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr5_3:16225682-16225701 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr5_3:16225686-16225705 | None:intergenic | 45.0% | |
| ! | CAGTGGCATTGAAGGGTCAA+AGG | - | chr5_3:16220176-16220195 | Msa0802050:CDS | 50.0% |
| TGTGGTTGTGTGCAGGTAGT+GGG | - | chr5_3:16220230-16220249 | Msa0802050:CDS | 50.0% | |
| !! | GGTAGTGGGGAGATGAATCA+TGG | - | chr5_3:16220244-16220263 | Msa0802050:CDS | 50.0% |
| AGTCCTCTGGTGAGCATGAA+AGG | - | chr5_3:16220267-16220286 | Msa0802050:intron | 50.0% | |
| CAACCTTTCATGCTCACCAG+AGG | + | chr5_3:16220273-16220292 | None:intergenic | 50.0% | |
| TCATGCAAATGGAAGCCGCA+TGG | - | chr5_3:16220307-16220326 | Msa0802050:intron | 50.0% | |
| CAACTTCTGATGCAGCCATG+CGG | + | chr5_3:16220325-16220344 | None:intergenic | 50.0% | |
| CATGGCTGCATCAGAAGTTG+AGG | - | chr5_3:16220325-16220344 | Msa0802050:intron | 50.0% | |
| GTTGAGGCTAAGCTCGATGA+AGG | - | chr5_3:16220341-16220360 | Msa0802050:intron | 50.0% | |
| GCAGAATCTGCATTGCGAGA+AGG | - | chr5_3:16220377-16220396 | Msa0802050:intron | 50.0% | |
| AATAGAGCCCAAACAGCCTG+AGG | + | chr5_3:16220771-16220790 | None:intergenic | 50.0% | |
| !! | TTTGAGGGCAAGCATTGACG+CGG | - | chr5_3:16220828-16220847 | Msa0802050:intron | 50.0% |
| AGGAAGCAAGGGCTCTTCTT+GGG | - | chr5_3:16221504-16221523 | Msa0802050:intron | 50.0% | |
| AAGGGCTCTTCTTGGGAAGT+TGG | - | chr5_3:16221511-16221530 | Msa0802050:intron | 50.0% | |
| ! | GGGAAGTTGGAGTATCAGAG+AGG | - | chr5_3:16221524-16221543 | Msa0802050:intron | 50.0% |
| GGTGCTCTTCGTGTCTTTGA+TGG | - | chr5_3:16221557-16221576 | Msa0802050:intron | 50.0% | |
| AAAACGAGGGTTGCAACCGT+TGG | + | chr5_3:16221604-16221623 | None:intergenic | 50.0% | |
| GCATGCTGAGAGACTGAAGA+AGG | + | chr5_3:16221671-16221690 | None:intergenic | 50.0% | |
| ! | CTCTCAGCATGCTGCTACTT+TGG | - | chr5_3:16221679-16221698 | Msa0802050:intron | 50.0% |
| CAACACAACACTGACACGTG+TGG | - | chr5_3:16221942-16221961 | Msa0802050:CDS | 50.0% | |
| ! | GGGTTGTGTCACTGCTTCAT+AGG | - | chr5_3:16222018-16222037 | Msa0802050:CDS | 50.0% |
| TAGAGCTCCTTCCAGAGCTT+TGG | - | chr5_3:16222223-16222242 | Msa0802050:CDS | 50.0% | |
| ! | CCTCCTTGTTTCCAAAGCTC+TGG | + | chr5_3:16222237-16222256 | None:intergenic | 50.0% |
| !! | CCAGAGCTTTGGAAACAAGG+AGG | - | chr5_3:16222234-16222253 | Msa0802050:CDS | 50.0% |
| ACAAGGAGGTTGCTATGACG+AGG | - | chr5_3:16222248-16222267 | Msa0802050:CDS | 50.0% | |
| TCTGTTGTACAGTGGTGTGG+AGG | - | chr5_3:16222359-16222378 | Msa0802050:CDS | 50.0% | |
| TCCGCCTAGTTTAGCAGTTC+AGG | - | chr5_3:16222386-16222405 | Msa0802050:CDS | 50.0% | |
| TGGTCGTTCGTGTTTGTGCA+AGG | + | chr5_3:16222691-16222710 | None:intergenic | 50.0% | |
| GAATACCTATCTTGCCGGTG+AGG | - | chr5_3:16222755-16222774 | Msa0802050:CDS | 50.0% | |
| !! | GGTGTTGCTCTTCGCATGTT+GGG | - | chr5_3:16222837-16222856 | Msa0802050:CDS | 50.0% |
| CGCATGTTGGGACTTTGTCT+TGG | - | chr5_3:16222849-16222868 | Msa0802050:CDS | 50.0% | |
| TTGCTTCCTCTGACTTCGAG+AGG | - | chr5_3:16222886-16222905 | Msa0802050:CDS | 50.0% | |
| TCGGTTTCAGTCCAAAGCTC+TGG | - | chr5_3:16222911-16222930 | Msa0802050:CDS | 50.0% | |
| !! | GTCCAAAGCTCTGGAGTCAT+TGG | - | chr5_3:16222920-16222939 | Msa0802050:CDS | 50.0% |
| !! | AGCTCTGGAGTCATTGGAAG+AGG | - | chr5_3:16222926-16222945 | Msa0802050:CDS | 50.0% |
| GCAAAGCAGCGGTGAGATTA+CGG | + | chr5_3:16223016-16223035 | None:intergenic | 50.0% | |
| ! | GTAATCTCACCGCTGCTTTG+CGG | - | chr5_3:16223015-16223034 | Msa0802050:CDS | 50.0% |
| GTGGCTCAATAGTGCAAGCT+TGG | - | chr5_3:16223066-16223085 | Msa0802050:intron | 50.0% | |
| TCTGTCACCACTTCAGCTTC+TGG | + | chr5_3:16223131-16223150 | None:intergenic | 50.0% | |
| GATCGCCCAATCAAAACCGA+TGG | - | chr5_3:16223217-16223236 | Msa0802050:intron | 50.0% | |
| GGGCTTGAACCAATGCAAGA+AGG | + | chr5_3:16223265-16223284 | None:intergenic | 50.0% | |
| !! | TTGCATTGGTTCAAGCCCAG+AGG | - | chr5_3:16223267-16223286 | Msa0802050:intron | 50.0% |
| CAAGCCCAGAGGAAATCCTT+TGG | - | chr5_3:16223278-16223297 | Msa0802050:intron | 50.0% | |
| TGAGGAAATGCAATTCCCCC+AGG | + | chr5_3:16223494-16223513 | None:intergenic | 50.0% | |
| ! | ACAACCCTCTCCTTTTACCC+GGG | + | chr5_3:16223631-16223650 | None:intergenic | 50.0% |
| ! | CACAACCCTCTCCTTTTACC+CGG | + | chr5_3:16223632-16223651 | None:intergenic | 50.0% |
| GCTATACAGCGCATTGCTTC+TGG | + | chr5_3:16223740-16223759 | None:intergenic | 50.0% | |
| TTTACCCCACTATGTGGGGT+CGG | + | chr5_3:16223859-16223878 | None:intergenic | 50.0% | |
| ATCCTTCCAACGAGAAAGGC+TGG | + | chr5_3:16224522-16224541 | None:intergenic | 50.0% | |
| CAGCATCCTTCCAACGAGAA+AGG | + | chr5_3:16224526-16224545 | None:intergenic | 50.0% | |
| GCAAAAGGCCAGAGAGTTGA+AGG | - | chr5_3:16224556-16224575 | Msa0802050:intron | 50.0% | |
| AGCCACATTCATCGAGGATG+TGG | - | chr5_3:16224779-16224798 | Msa0802050:CDS | 50.0% | |
| CTCCACATCCTCGATGAATG+TGG | + | chr5_3:16224784-16224803 | None:intergenic | 50.0% | |
| AACCGACCAATCGTATGGCT+TGG | - | chr5_3:16225082-16225101 | Msa0802050:intron | 50.0% | |
| TCACAAGCATGATGGCCGAA+TGG | - | chr5_3:16225122-16225141 | Msa0802050:intron | 50.0% | |
| CACAAGCATGATGGCCGAAT+GGG | - | chr5_3:16225123-16225142 | Msa0802050:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr5_3:16225683-16225702 | None:intergenic | 50.0% | |
| GGATCCGTTACCGTGGGAAA+TGG | - | chr5_3:16219909-16219928 | Msa0802050:three_prime_UTR | 55.0% | |
| GTGTGGTTGTGTGCAGGTAG+TGG | - | chr5_3:16220229-16220248 | Msa0802050:CDS | 55.0% | |
| GTGGTTGTGTGCAGGTAGTG+GGG | - | chr5_3:16220231-16220250 | Msa0802050:CDS | 55.0% | |
| TACCCTCCCTAGATCCCCTT+TGG | - | chr5_3:16220917-16220936 | Msa0802050:intron | 55.0% | |
| ACCCTCCCTAGATCCCCTTT+GGG | - | chr5_3:16220918-16220937 | Msa0802050:intron | 55.0% | |
| CAGGAAGCAAGGGCTCTTCT+TGG | - | chr5_3:16221503-16221522 | Msa0802050:intron | 55.0% | |
| ACCTCCATGCTGCCATCCAA+CGG | - | chr5_3:16221585-16221604 | Msa0802050:intron | 55.0% | |
| ! | GTCGCGTTCGATCTGAAGTG+TGG | + | chr5_3:16221900-16221919 | None:intergenic | 55.0% |
| CACTTCAGATCGAACGCGAC+TGG | - | chr5_3:16221900-16221919 | Msa0802050:CDS | 55.0% | |
| CTGGAAGGAGCTCTACTGCA+TGG | + | chr5_3:16222218-16222237 | None:intergenic | 55.0% | |
| GGCGTGCCCTTCTTAGTCAA+TGG | - | chr5_3:16222286-16222305 | Msa0802050:CDS | 55.0% | |
| TCTTGATTGCCCTCTGCGCA+TGG | + | chr5_3:16222788-16222807 | None:intergenic | 55.0% | |
| !! | GGGTGTTGCTCTTCGCATGT+TGG | - | chr5_3:16222836-16222855 | Msa0802050:CDS | 55.0% |
| CCTCTGACTTCGAGAGGTCT+CGG | - | chr5_3:16222892-16222911 | Msa0802050:CDS | 55.0% | |
| TCAGACTGTGAGATGGGAGC+AGG | - | chr5_3:16223163-16223182 | Msa0802050:intron | 55.0% | |
| CAGACTGTGAGATGGGAGCA+GGG | - | chr5_3:16223164-16223183 | Msa0802050:intron | 55.0% | |
| AGACTGTGAGATGGGAGCAG+GGG | - | chr5_3:16223165-16223184 | Msa0802050:intron | 55.0% | |
| CAGACAAGCTTGGCCCTATG+AGG | + | chr5_3:16223512-16223531 | None:intergenic | 55.0% | |
| GGGTCCGGCAATGTATACCA+AGG | + | chr5_3:16223605-16223624 | None:intergenic | 55.0% | |
| ! | CTCTCCTTTTACCCGGGCTT+GGG | + | chr5_3:16223625-16223644 | None:intergenic | 55.0% |
| CAAGCCCGGGTAAAAGGAGA+GGG | - | chr5_3:16223624-16223643 | Msa0802050:CDS | 55.0% | |
| ! | GCATCCAGGTGATGATGCAG+CGG | + | chr5_3:16223790-16223809 | None:intergenic | 55.0% |
| ACTATGTGGGGTCGGCTACA+TGG | + | chr5_3:16223851-16223870 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACATAG+TGG | - | chr5_3:16223850-16223869 | Msa0802050:intron | 55.0% | |
| TGTAGCCGACCCCACATAGT+GGG | - | chr5_3:16223851-16223870 | Msa0802050:intron | 55.0% | |
| TGCCAGCCTTTCTCGTTGGA+AGG | - | chr5_3:16224517-16224536 | Msa0802050:intron | 55.0% | |
| AGTCCGCAGCATCACCCATT+CGG | + | chr5_3:16225140-16225159 | None:intergenic | 55.0% | |
| GCAACGTGGAGACGGAGCAA+TGG | + | chr5_3:16219685-16219704 | None:intergenic | 60.0% | |
| GCTCCGTCTCCACGTTGCTT+TGG | - | chr5_3:16219687-16219706 | Msa0802050:three_prime_UTR | 60.0% | |
| CCCCAAAGGGGATCTAGGGA+GGG | + | chr5_3:16220922-16220941 | None:intergenic | 60.0% | |
| CCCTCCCTAGATCCCCTTTG+GGG | - | chr5_3:16220919-16220938 | Msa0802050:intron | 60.0% | |
| CCTCCCTAGATCCCCTTTGG+GGG | - | chr5_3:16220920-16220939 | Msa0802050:intron | 60.0% | |
| CTCCCTAGATCCCCTTTGGG+GGG | - | chr5_3:16220921-16220940 | Msa0802050:intron | 60.0% | |
| CTCCCCCCAAAGGGGATCTA+GGG | + | chr5_3:16220926-16220945 | None:intergenic | 60.0% | |
| AAAGGGTTGCCTGGTGCACG+AGG | + | chr5_3:16220949-16220968 | None:intergenic | 60.0% | |
| ACCGTTGGATGGCAGCATGG+AGG | + | chr5_3:16221589-16221608 | None:intergenic | 60.0% | |
| GCAACCGTTGGATGGCAGCA+TGG | + | chr5_3:16221592-16221611 | None:intergenic | 60.0% | |
| CGAGGGTTGCAACCGTTGGA+TGG | + | chr5_3:16221600-16221619 | None:intergenic | 60.0% | |
| GACTCCCTCACCGGCAAGAT+AGG | + | chr5_3:16222763-16222782 | None:intergenic | 60.0% | |
| CCGAGACCTCTCGAAGTCAG+AGG | + | chr5_3:16222895-16222914 | None:intergenic | 60.0% | |
| TACATTGCCGGACCCAAGCC+CGG | - | chr5_3:16223610-16223629 | Msa0802050:CDS | 60.0% | |
| ! | CTTTTACCCGGGCTTGGGTC+CGG | + | chr5_3:16223620-16223639 | None:intergenic | 60.0% |
| ! | CCTCTCCTTTTACCCGGGCT+TGG | + | chr5_3:16223626-16223645 | None:intergenic | 60.0% |
| CCAAGCCCGGGTAAAAGGAG+AGG | - | chr5_3:16223623-16223642 | Msa0802050:CDS | 60.0% | |
| GTAGCCGACCCCACATAGTG+GGG | - | chr5_3:16223852-16223871 | Msa0802050:intron | 60.0% | |
| AGCATGCTTCTCGCAGCAGC+AGG | + | chr5_3:16225042-16225061 | None:intergenic | 60.0% | |
| TGGCCGAATGGGTGATGCTG+CGG | - | chr5_3:16225134-16225153 | Msa0802050:intron | 60.0% | |
| ! | TGATGCTGCGGACTGCTTCC+AGG | - | chr5_3:16225146-16225165 | Msa0802050:intron | 60.0% |
| CTTCCAGGCAGCTTCCATGC+TGG | - | chr5_3:16225161-16225180 | Msa0802050:intron | 60.0% | |
| CTTCCAGCATGGAAGCTGCC+TGG | + | chr5_3:16225167-16225186 | None:intergenic | 60.0% | |
| CCCCCAAAGGGGATCTAGGG+AGG | + | chr5_3:16220923-16220942 | None:intergenic | 65.0% | |
| GCTCCCCCCAAAGGGGATCT+AGG | + | chr5_3:16220927-16220946 | None:intergenic | 65.0% | |
| TGCACGAGGCTCCCCCCAAA+GGG | + | chr5_3:16220935-16220954 | None:intergenic | 65.0% | |
| ! | CGCATGGCTGACTCCCTCAC+CGG | + | chr5_3:16222772-16222791 | None:intergenic | 65.0% |
| AGGGAGTCAGCCATGCGCAG+AGG | - | chr5_3:16222775-16222794 | Msa0802050:CDS | 65.0% | |
| GGGAGTCAGCCATGCGCAGA+GGG | - | chr5_3:16222776-16222795 | Msa0802050:CDS | 65.0% | |
| ACATTGCCGGACCCAAGCCC+GGG | - | chr5_3:16223611-16223630 | Msa0802050:CDS | 65.0% | |
| CGGACCCAAGCCCGGGTAAA+AGG | - | chr5_3:16223618-16223637 | Msa0802050:CDS | 65.0% | |
| AGGGCCGCTGCATCATCACC+TGG | - | chr5_3:16223783-16223802 | Msa0802050:intron | 65.0% | |
| GCACGAGGCTCCCCCCAAAG+GGG | + | chr5_3:16220934-16220953 | None:intergenic | 70.0% | |
| GTGCACGAGGCTCCCCCCAA+AGG | + | chr5_3:16220936-16220955 | None:intergenic | 70.0% | |
| CCGCGCAGACCGCAAAGCAG+CGG | + | chr5_3:16223027-16223046 | None:intergenic | 70.0% | |
| ! | CCGCTGCTTTGCGGTCTGCG+CGG | - | chr5_3:16223024-16223043 | Msa0802050:CDS | 70.0% |
| TGGGGGGAGCCTCGTGCACC+AGG | - | chr5_3:16220937-16220956 | Msa0802050:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16219446 | 16225735 | 16219446 | ID=Msa0802050;Name=Msa0802050 |
| chr5_3 | mRNA | 16219446 | 16225735 | 16219446 | ID=Msa0802050-mRNA-1;Parent=Msa0802050;Name=Msa0802050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=281|0.8|0.83|1|0.8|0.66|6|511|711 |
| chr5_3 | exon | 16219446 | 16220279 | 16219446 | ID=Msa0802050-mRNA-1:exon:6809;Parent=Msa0802050-mRNA-1 |
| chr5_3 | exon | 16220528 | 16220720 | 16220528 | ID=Msa0802050-mRNA-1:exon:6808;Parent=Msa0802050-mRNA-1 |
| chr5_3 | exon | 16221859 | 16223069 | 16221859 | ID=Msa0802050-mRNA-1:exon:6807;Parent=Msa0802050-mRNA-1 |
| chr5_3 | exon | 16223423 | 16223675 | 16223423 | ID=Msa0802050-mRNA-1:exon:6806;Parent=Msa0802050-mRNA-1 |
| chr5_3 | exon | 16224763 | 16224936 | 16224763 | ID=Msa0802050-mRNA-1:exon:6805;Parent=Msa0802050-mRNA-1 |
| chr5_3 | exon | 16225473 | 16225735 | 16225473 | ID=Msa0802050-mRNA-1:exon:6804;Parent=Msa0802050-mRNA-1 |
| chr5_3 | five_prime_UTR | 16225473 | 16225735 | 16225473 | ID=Msa0802050-mRNA-1:five_prime_utr;Parent=Msa0802050-mRNA-1 |
| chr5_3 | five_prime_UTR | 16224919 | 16224936 | 16224919 | ID=Msa0802050-mRNA-1:five_prime_utr;Parent=Msa0802050-mRNA-1 |
| chr5_3 | CDS | 16224763 | 16224918 | 16224763 | ID=Msa0802050-mRNA-1:cds;Parent=Msa0802050-mRNA-1 |
| chr5_3 | CDS | 16223423 | 16223675 | 16223423 | ID=Msa0802050-mRNA-1:cds;Parent=Msa0802050-mRNA-1 |
| chr5_3 | CDS | 16221859 | 16223069 | 16221859 | ID=Msa0802050-mRNA-1:cds;Parent=Msa0802050-mRNA-1 |
| chr5_3 | CDS | 16220528 | 16220720 | 16220528 | ID=Msa0802050-mRNA-1:cds;Parent=Msa0802050-mRNA-1 |
| chr5_3 | CDS | 16219957 | 16220279 | 16219957 | ID=Msa0802050-mRNA-1:cds;Parent=Msa0802050-mRNA-1 |
| chr5_3 | three_prime_UTR | 16219446 | 16219956 | 16219446 | ID=Msa0802050-mRNA-1:three_prime_utr;Parent=Msa0802050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
