AlfalfaGEDB | Msa0805340

M. sativa cultivar zhongmu-4 / Msa0805340

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0805340	XP_003613189.1	95.740	493	16	2	1	488	1	493	0.0	949

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0805340	sp\|Q8VYR3\|TBL2_ARATH	56.030	539	177	10	1	482	1	536	0.0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0805340	G7K066	95.740	493	16	2	1	488	1	493	0.0	949

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0805340	Msa0810020	0.802383	5.757225e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0805340	MtrunA17_Chr5g0413271	94.320	493	16	3	1	488	1	486	0.0	926
Msa0805340	MtrunA17_Chr8g0368461	61.049	534	155	8	6	487	5	537	0.0	620
Msa0805340	MtrunA17_Chr1g0175671	52.750	400	182	3	87	479	111	510	4.67e-156	454
Msa0805340	MtrunA17_Chr7g0258851	52.518	417	194	3	66	479	173	588	2.19e-155	455
Msa0805340	MtrunA17_Chr1g0213281	53.151	365	166	3	129	488	164	528	1.01e-145	427
Msa0805340	MtrunA17_Chr4g0068111	54.810	343	150	3	140	479	114	454	1.43e-144	422
Msa0805340	MtrunA17_Chr4g0071391	48.433	351	178	2	130	479	99	447	1.02e-134	397
Msa0805340	MtrunA17_Chr7g0269991	43.371	445	229	8	53	484	38	472	5.43e-123	367
Msa0805340	MtrunA17_Chr2g0287901	42.448	384	197	7	113	480	64	439	2.37e-103	316
Msa0805340	MtrunA17_Chr7g0259711	42.737	358	178	5	138	480	89	434	5.32e-100	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0805340	AT1G60790.1	56.030	539	177	10	1	482	1	536	0.0	575
Msa0805340	AT5G06700.1	58.065	341	142	1	140	479	255	595	1.30e-154	453
Msa0805340	AT3G12060.1	57.185	341	145	1	140	479	196	536	3.16e-149	437
Msa0805340	AT5G49340.1	54.674	353	157	3	130	479	90	442	1.22e-142	417
Msa0805340	AT5G20590.1	52.478	343	157	4	140	479	141	480	1.76e-139	410
Msa0805340	AT3G62390.1	47.043	372	190	4	109	479	107	472	1.04e-122	367
Msa0805340	AT5G19160.1	44.920	374	184	6	121	481	83	447	9.24e-110	333
Msa0805340	AT3G06080.2	45.299	351	178	6	140	481	103	448	5.52e-103	316
Msa0805340	AT5G20590.2	52.941	238	110	2	140	375	141	378	4.55e-94	290
Msa0805340	AT5G06230.2	40.054	367	201	5	124	479	7	365	5.36e-92	285

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Find 117 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTGATATATTTGAT+GGG	0.611221	5_3:-21901765	Msa0805340:CDS
AAACATGAATTTAAGAAGAA+AGG	0.483840	5_3:-21900383	Msa0805340:CDS
AAACGTGTTTATGAAATTTC+AGG	0.201586	5_3:-21900407	Msa0805340:CDS
AAAGTGTGTGTGTTCGTGTG+TGG	0.538463	5_3:+21902257	None:intergenic
AAAGTTGCGAGGGCAGAGGT+TGG	0.587073	5_3:-21900507	Msa0805340:CDS
AACAAATTCTACAGCTATCA+TGG	0.433157	5_3:+21897592	None:intergenic
AACACCAAGATTGTAGCCAT+TGG	0.569035	5_3:-21897906	Msa0805340:CDS
AAGAGGAGTGATTGAAACGT+TGG	0.532254	5_3:+21902002	None:intergenic
AAGTGATCTCCTTTATATAT+TGG	0.322525	5_3:+21898096	None:intergenic
AAGTGGAAATGGAAGCCAAA+TGG	0.542098	5_3:-21901634	Msa0805340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTCTGTGTGATGAAAA+GGG	+	chr5_3:21897647-21897666	None:intergenic	30.0%
CGAAGTTAATGTTTCAAATC+AGG	-	chr5_3:21897844-21897863	Msa0805340:CDS	30.0%
TTCAGTAAAATTCCCCAAAA+GGG	+	chr5_3:21897882-21897901	None:intergenic	30.0%
TTTCAGTAAAATTCCCCAAA+AGG	+	chr5_3:21897883-21897902	None:intergenic	30.0%
GTGATATATTTGATGGGAAT+TGG	-	chr5_3:21898029-21898048	Msa0805340:CDS	30.0%
CAAGAACCCAAATCATAATA+TGG	+	chr5_3:21898073-21898092	None:intergenic	30.0%
CACTTAACATAATCACTATC+AGG	+	chr5_3:21898139-21898158	None:intergenic	30.0%
GTGATTATGTTAAGTGGAAA+TGG	-	chr5_3:21898143-21898162	Msa0805340:CDS	30.0%
TGCATACATAATACATACCT+TGG	+	chr5_3:21898190-21898209	None:intergenic	30.0%
TGGTATATAATAGGAAGACA+AGG	-	chr5_3:21898394-21898413	Msa0805340:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	21897476	21902334	21897476	ID=Msa0805340;Name=Msa0805340
chr5_3	mRNA	21897476	21902334	21897476	ID=Msa0805340-mRNA-1;Parent=Msa0805340;Name=Msa0805340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=135\|1\|1\|1\|0.8\|0.66\|6\|321\|488
chr5_3	exon	21897476	21897771	21897476	ID=Msa0805340-mRNA-1:exon:8774;Parent=Msa0805340-mRNA-1
chr5_3	exon	21897797	21898164	21897797	ID=Msa0805340-mRNA-1:exon:8773;Parent=Msa0805340-mRNA-1
chr5_3	exon	21899505	21899663	21899505	ID=Msa0805340-mRNA-1:exon:8772;Parent=Msa0805340-mRNA-1
chr5_3	exon	21900080	21900270	21900080	ID=Msa0805340-mRNA-1:exon:8771;Parent=Msa0805340-mRNA-1
chr5_3	exon	21900361	21900553	21900361	ID=Msa0805340-mRNA-1:exon:8770;Parent=Msa0805340-mRNA-1
chr5_3	exon	21901619	21902334	21901619	ID=Msa0805340-mRNA-1:exon:8769;Parent=Msa0805340-mRNA-1
chr5_3	five_prime_UTR	21902200	21902334	21902200	ID=Msa0805340-mRNA-1:five_prime_utr;Parent=Msa0805340-mRNA-1
chr5_3	CDS	21901619	21902199	21901619	ID=Msa0805340-mRNA-1:cds;Parent=Msa0805340-mRNA-1
chr5_3	CDS	21900361	21900553	21900361	ID=Msa0805340-mRNA-1:cds;Parent=Msa0805340-mRNA-1
chr5_3	CDS	21900080	21900270	21900080	ID=Msa0805340-mRNA-1:cds;Parent=Msa0805340-mRNA-1
chr5_3	CDS	21899505	21899663	21899505	ID=Msa0805340-mRNA-1:cds;Parent=Msa0805340-mRNA-1
chr5_3	CDS	21897822	21898164	21897822	ID=Msa0805340-mRNA-1:cds;Parent=Msa0805340-mRNA-1
chr5_3	three_prime_UTR	21897797	21897821	21897797	ID=Msa0805340-mRNA-1:three_prime_utr;Parent=Msa0805340-mRNA-1
chr5_3	three_prime_UTR	21897476	21897771	21897476	ID=Msa0805340-mRNA-1:three_prime_utr;Parent=Msa0805340-mRNA-1

Gene Sequence

>Msa0805340

ATGGAATGGAACAAGAGAATAACATTCTCAGAACCCTTTTCATCACACAGAAGAAAAGTGTTATCTGGTTTCACTTTAGGTCTTGTTGCTTCTCTTCTCTTTCTCTCTCTTCTCTTCCTCAACTCTTCTTCATTCTCTGAATGGCATTTTCCATTCTCCAATTTATCTCCTTCCTCCAACGTTTCAATCACTCCTCTTTACACAATTCATCAACAACAATTGAGTAAAATCCCCGAAGTTAATGTTTCAAATCAGGGTTTTCAGAATACCCTTTTGGGGAATTTTACTGAAAATGGTTATAATGCAAGTTTTGAATCAAATGGGGTTGATAAAGTTGGAAACTTTTCTGTTGGGAAAGGTGAAATTGATGGGAATTTGAGTGGTACTGTGGAAGAAAATGTGAAATTTGATGAAAAGTGTGATATATTTGATGGGAATTGGGTGAGAGATGATTCAAAGCCATATTATGATTTGGGTTCTTGTCCATTTGTGGATAGGGATTTTGATTGTCATCTTAATGGTAGACCTGATAGTGATTATGTTAAGTGGAAATGGAAGCCAAATGGGTGTGATATTCCAAGTTTGAATGCAACCGATTTTCTGGAAAAGTTGCGAGGGCAGAGGTTGGTTTTCGTTGGGGATTCACTGAACCGGAACATGTGGGAGTCTATGGTGTGTATCCTACGTCAAAGCATCAATGACAAGAAACGTGTTTATGAAATTTCAGGAAAACATGAATTTAAGAAGAAAGGTGTCTACGCTTTTAGATTTGAGGATTATAATTGTTCAGTAGATTTTGTGAGTTCACCATTCATTGTTCAAGAGTCGATTTTCAAAGGCGTAAATGGGTCATTTGAGACATTAAGATTGGATTTGATGGACCAGACAACTTCCACGTATCATGATGCTGAGATCATAGTCTTCAATACAGGGCATTGGTGGACCCACGAGAAAACATCTAGGGGAGAAGACTATTATCAAGAAGGCAAACATGTATACCCAAGACTCAAAGTTCTGGATGCATATACAAGGGCATTGAAAACTTGGGCTAGATGGATTGACAACAATATTGACGCAAATCGAACAAATGTTTTCTTCAGAGGATACTCAGTTACTCATTTCAGGGGTGGGCAATGGAATTCAGGAGGACAGTGCCACAAAGAAACTGAGCCAATATATAAAGGAGATCACTTACGGAAATATCCGTCGAAAATGAGGGCTTTAGATTATGTCATCCCAAAGATGAAAACTCCAGTTATTTATATGAACATAAGTAGGATGACAGATTACAGAAAAGACGCCCATCCATCAATATACAGAATGGAATACAAGACAGAAGCAGAACGAACCACCGCGGAGCAACACCAAGATTGTAGCCATTGGTGCTTACCAGGAGTACCGGATACCTGGAACGAATTACTCTATGCTTCTCTCTTAAAAAATGGAAAAGGGAATTGGAAAAGTTGA

Protein sequence

>Msa0805340

MEWNKRITFSEPFSSHRRKVLSGFTLGLVASLLFLSLLFLNSSSFSEWHFPFSNLSPSSNVSITPLYTIHQQQLSKIPEVNVSNQGFQNTLLGNFTENGYNASFESNGVDKVGNFSVGKGEIDGNLSGTVEENVKFDEKCDIFDGNWVRDDSKPYYDLGSCPFVDRDFDCHLNGRPDSDYVKWKWKPNGCDIPSLNATDFLEKLRGQRLVFVGDSLNRNMWESMVCILRQSINDKKRVYEISGKHEFKKKGVYAFRFEDYNCSVDFVSSPFIVQESIFKGVNGSFETLRLDLMDQTTSTYHDAEIIVFNTGHWWTHEKTSRGEDYYQEGKHVYPRLKVLDAYTRALKTWARWIDNNIDANRTNVFFRGYSVTHFRGGQWNSGGQCHKETEPIYKGDHLRKYPSKMRALDYVIPKMKTPVIYMNISRMTDYRKDAHPSIYRMEYKTEAERTTAEQHQDCSHWCLPGVPDTWNELLYASLLKNGKGNWKS*