Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805470 | XP_003613209.1 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 5.91e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805470 | sp|Q9LDT3|YAB4_ARATH | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.30e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805470 | G7K086 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 2.83e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0805470 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0762990 | Msa0805470 | 0.829156 | 6.027396e-55 | -8.615850e-47 |
| Msa0763040 | Msa0805470 | 0.820092 | 8.231760e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805470 | MtrunA17_Chr5g0413381 | 99.482 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 2.46e-144 | 400 |
| Msa0805470 | MtrunA17_Chr4g0063931 | 49.686 | 159 | 58 | 4 | 12 | 162 | 14 | 158 | 9.90e-45 | 147 |
| Msa0805470 | MtrunA17_Chr2g0322221 | 51.250 | 160 | 62 | 4 | 12 | 162 | 12 | 164 | 5.24e-44 | 145 |
| Msa0805470 | MtrunA17_Chr4g0025361 | 48.701 | 154 | 66 | 3 | 12 | 162 | 9 | 152 | 9.54e-41 | 137 |
| Msa0805470 | MtrunA17_Chr4g0011841 | 50.000 | 156 | 70 | 2 | 14 | 162 | 25 | 179 | 5.43e-40 | 136 |
| Msa0805470 | MtrunA17_Chr4g0056521 | 51.553 | 161 | 64 | 5 | 12 | 162 | 18 | 174 | 1.75e-39 | 135 |
| Msa0805470 | MtrunA17_Chr5g0419871 | 37.662 | 154 | 69 | 2 | 12 | 157 | 17 | 151 | 2.02e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805470 | AT1G23420.1 | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.37e-73 | 221 |
| Msa0805470 | AT1G23420.2 | 55.947 | 227 | 85 | 4 | 2 | 217 | 40 | 262 | 5.81e-73 | 222 |
| Msa0805470 | AT2G26580.2 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0805470 | AT2G26580.1 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0805470 | AT2G45190.1 | 46.061 | 165 | 79 | 1 | 8 | 162 | 19 | 183 | 1.05e-42 | 144 |
| Msa0805470 | AT1G08465.1 | 49.677 | 155 | 66 | 4 | 12 | 162 | 8 | 154 | 7.65e-41 | 137 |
| Msa0805470 | AT4G00180.1 | 45.810 | 179 | 71 | 5 | 8 | 162 | 19 | 195 | 8.36e-39 | 134 |
| Msa0805470 | AT4G00180.2 | 43.976 | 166 | 67 | 5 | 21 | 162 | 1 | 164 | 6.60e-30 | 110 |
| Msa0805470 | AT1G69180.1 | 40.385 | 156 | 73 | 4 | 12 | 163 | 19 | 158 | 5.99e-29 | 107 |
| Msa0805470 | AT2G45190.2 | 63.636 | 66 | 24 | 0 | 97 | 162 | 54 | 119 | 4.09e-25 | 97.1 |
Find 39 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAGAGAAGAGATTAAA+AGG | 0.220244 | 5_3:+22114327 | Msa0805470:intron |
| ACTTATGGTTACCATTAAAA+TGG | 0.245580 | 5_3:-22113579 | None:intergenic |
| CATCACCTTTGCACTGAGTT+GGG | 0.247070 | 5_3:-22114592 | None:intergenic |
| GCTTCCTTGTGAGCCATATC+AGG | 0.254990 | 5_3:-22114365 | None:intergenic |
| CTTTCCAAGATGGAATTTCT+TGG | 0.337983 | 5_3:-22115284 | None:intergenic |
| GATGAGTAAGAGATGCTAAA+AGG | 0.346967 | 5_3:-22113814 | None:intergenic |
| GGTGTTCTTTGTCTCTTCTC+TGG | 0.372695 | 5_3:-22114197 | None:intergenic |
| TGTACATAGCAAATCTGTTC+TGG | 0.376697 | 5_3:-22113539 | None:intergenic |
| TCATCACCTTTGCACTGAGT+TGG | 0.384038 | 5_3:-22114593 | None:intergenic |
| TATTCATTCATTCACTCAAA+TGG | 0.405002 | 5_3:-22115311 | None:intergenic |
| TTATTGACAACATTGCTGAT+TGG | 0.429525 | 5_3:-22114065 | None:intergenic |
| ATCACCTTTGCACTGAGTTG+GGG | 0.440172 | 5_3:-22114591 | None:intergenic |
| GATCCACAAATTGATCTGTC+TGG | 0.455209 | 5_3:-22114628 | None:intergenic |
| ACAAGGATTCCGTGGAAGAA+AGG | 0.512794 | 5_3:+22115259 | Msa0805470:CDS |
| AGCATCTCTTACTCATCTTG+AGG | 0.521370 | 5_3:+22113820 | Msa0805470:CDS |
| GGTACCAAGAAATTCCATCT+TGG | 0.522438 | 5_3:+22115280 | Msa0805470:CDS |
| ACAATCAGAATAAGTCATCA+TGG | 0.529221 | 5_3:-22114024 | None:intergenic |
| AAATGGTGTCCTTTCCAAGA+TGG | 0.529231 | 5_3:-22115294 | None:intergenic |
| TAGCCAGACAGATCAATTTG+TGG | 0.529249 | 5_3:+22114625 | Msa0805470:CDS |
| AGAAGAGATTAAAAGGCTAA+AGG | 0.529887 | 5_3:+22114334 | Msa0805470:CDS |
| ATATTAATTACTTGATGAAG+CGG | 0.533614 | 5_3:-22114232 | None:intergenic |
| TTCTTGGTACCTTTCTTCCA+CGG | 0.541076 | 5_3:-22115268 | None:intergenic |
| CTTCCTTGTGAGCCATATCA+GGG | 0.545406 | 5_3:-22114364 | None:intergenic |
| GAGATGCTAAAAGGTGGAAA+GGG | 0.553103 | 5_3:-22113805 | None:intergenic |
| AGAGATGCTAAAAGGTGGAA+AGG | 0.557063 | 5_3:-22113806 | None:intergenic |
| GAGTAAGAGATGCTAAAAGG+TGG | 0.562368 | 5_3:-22113811 | None:intergenic |
| CAGGTGAATGAAGAAGAACA+AGG | 0.564909 | 5_3:+22115242 | Msa0805470:intron |
| GAAGAAGAACAAGGATTCCG+TGG | 0.572480 | 5_3:+22115251 | Msa0805470:CDS |
| AAACCCTGATATGGCTCACA+AGG | 0.577441 | 5_3:+22114361 | Msa0805470:CDS |
| ACCATTGTCAAACTACTGCA+TGG | 0.581629 | 5_3:-22113716 | None:intergenic |
| CAAGAAATTCCATCTTGGAA+AGG | 0.597804 | 5_3:+22115285 | Msa0805470:CDS |
| TCACCTTTGCACTGAGTTGG+GGG | 0.601505 | 5_3:-22114590 | None:intergenic |
| GATGACTTATTCTGATTGTG+AGG | 0.620697 | 5_3:+22114028 | Msa0805470:CDS |
| CAGATTTGCTATGTACAATG+TGG | 0.632418 | 5_3:+22113545 | Msa0805470:CDS |
| ATGCAGTAGTTTGACAATGG+TGG | 0.659252 | 5_3:+22113718 | Msa0805470:CDS |
| ATGAAGCGGTTATAAGCTGA+TGG | 0.663979 | 5_3:-22114218 | None:intergenic |
| TGTGGATCTTGACTCCCAAG+TGG | 0.667148 | 5_3:+22114643 | Msa0805470:CDS |
| TCCATGCAGTAGTTTGACAA+TGG | 0.677730 | 5_3:+22113715 | Msa0805470:CDS |
| ATGGTGGTGACAGTAAGATG+TGG | 0.764759 | 5_3:+22113734 | Msa0805470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_3:22114558-22114577 | Msa0805470:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_3:22114559-22114578 | Msa0805470:intron | 10.0% |
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_3:22114558-22114577 | Msa0805470:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_3:22114559-22114578 | Msa0805470:intron | 10.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_3:22113868-22113887 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_3:22113873-22113892 | Msa0805470:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_3:22114498-22114517 | Msa0805470:intron | 15.0% |
| !!! | CAAAGCATAATATTTTTAAA+AGG | - | chr5_3:22115031-22115050 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_3:22113868-22113887 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_3:22113873-22113892 | Msa0805470:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_3:22114498-22114517 | Msa0805470:intron | 15.0% |
| !!! | CAAAGCATAATATTTTTAAA+AGG | - | chr5_3:22115031-22115050 | None:intergenic | 15.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_3:22114235-22114254 | None:intergenic | 20.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_3:22114235-22114254 | None:intergenic | 20.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_3:22113568-22113587 | Msa0805470:CDS | 25.0% |
| ! | ACTTATGGTTACCATTAAAA+TGG | - | chr5_3:22113582-22113601 | None:intergenic | 25.0% |
| ! | AAGAGCAATTAGAAAACTTA+TGG | - | chr5_3:22113597-22113616 | None:intergenic | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_3:22113614-22113633 | Msa0805470:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_3:22114481-22114500 | Msa0805470:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_3:22114779-22114798 | Msa0805470:intron | 25.0% |
| ! | TATAGATTACAAATACAGGT+AGG | - | chr5_3:22115183-22115202 | None:intergenic | 25.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_3:22113568-22113587 | Msa0805470:CDS | 25.0% |
| ! | ACTTATGGTTACCATTAAAA+TGG | - | chr5_3:22113582-22113601 | None:intergenic | 25.0% |
| ! | AAGAGCAATTAGAAAACTTA+TGG | - | chr5_3:22113597-22113616 | None:intergenic | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_3:22113614-22113633 | Msa0805470:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_3:22114481-22114500 | Msa0805470:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_3:22114779-22114798 | Msa0805470:intron | 25.0% |
| ! | TATAGATTACAAATACAGGT+AGG | - | chr5_3:22115183-22115202 | None:intergenic | 25.0% |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_3:22114027-22114046 | None:intergenic | 30.0% | |
| TTATTGACAACATTGCTGAT+TGG | - | chr5_3:22114068-22114087 | None:intergenic | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_3:22114327-22114346 | Msa0805470:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_3:22114334-22114353 | Msa0805470:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_3:22114456-22114475 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_3:22114796-22114815 | Msa0805470:intron | 30.0% | |
| GTCTCTTTCATTATATCACA+TGG | + | chr5_3:22114850-22114869 | Msa0805470:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_3:22114863-22114882 | Msa0805470:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_3:22115015-22115034 | None:intergenic | 30.0% | |
| ! | AATACAGGTAGGTTTTTCTT+TGG | - | chr5_3:22115172-22115191 | None:intergenic | 30.0% |
| CTGCTATAGATTACAAATAC+AGG | - | chr5_3:22115187-22115206 | None:intergenic | 30.0% | |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_3:22114027-22114046 | None:intergenic | 30.0% | |
| TTATTGACAACATTGCTGAT+TGG | - | chr5_3:22114068-22114087 | None:intergenic | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_3:22114327-22114346 | Msa0805470:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_3:22114334-22114353 | Msa0805470:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_3:22114456-22114475 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_3:22114796-22114815 | Msa0805470:intron | 30.0% | |
| GTCTCTTTCATTATATCACA+TGG | + | chr5_3:22114850-22114869 | Msa0805470:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_3:22114863-22114882 | Msa0805470:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_3:22115015-22115034 | None:intergenic | 30.0% | |
| ! | AATACAGGTAGGTTTTTCTT+TGG | - | chr5_3:22115172-22115191 | None:intergenic | 30.0% |
| CTGCTATAGATTACAAATAC+AGG | - | chr5_3:22115187-22115206 | None:intergenic | 30.0% | |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_3:22113526-22113545 | None:intergenic | 35.0% |
| TGTACATAGCAAATCTGTTC+TGG | - | chr5_3:22113542-22113561 | None:intergenic | 35.0% | |
| !! | CAGATTTGCTATGTACAATG+TGG | + | chr5_3:22113545-22113564 | Msa0805470:CDS | 35.0% |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_3:22113685-22113704 | Msa0805470:intron | 35.0% | |
| GATGAGTAAGAGATGCTAAA+AGG | - | chr5_3:22113817-22113836 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTGCATCTTCATC+TGG | - | chr5_3:22113981-22114000 | None:intergenic | 35.0% |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_3:22114028-22114047 | Msa0805470:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_3:22114352-22114371 | Msa0805470:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_3:22114393-22114412 | Msa0805470:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_3:22114518-22114537 | Msa0805470:intron | 35.0% | |
| !! | TGTTTTTACCTCAGCTTCAT+GGG | - | chr5_3:22114672-22114691 | None:intergenic | 35.0% |
| !! | ATGTTTTTACCTCAGCTTCA+TGG | - | chr5_3:22114673-22114692 | None:intergenic | 35.0% |
| ACTTCATATCCTCATCTTGT+TGG | + | chr5_3:22114912-22114931 | Msa0805470:intron | 35.0% | |
| TCTACAAGAACTTTCCAGTT+TGG | - | chr5_3:22114964-22114983 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_3:22115287-22115306 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_3:22115285-22115304 | Msa0805470:CDS | 35.0% | |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_3:22113526-22113545 | None:intergenic | 35.0% |
| TGTACATAGCAAATCTGTTC+TGG | - | chr5_3:22113542-22113561 | None:intergenic | 35.0% | |
| !! | CAGATTTGCTATGTACAATG+TGG | + | chr5_3:22113545-22113564 | Msa0805470:CDS | 35.0% |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_3:22113685-22113704 | Msa0805470:intron | 35.0% | |
| GATGAGTAAGAGATGCTAAA+AGG | - | chr5_3:22113817-22113836 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTGCATCTTCATC+TGG | - | chr5_3:22113981-22114000 | None:intergenic | 35.0% |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_3:22114028-22114047 | Msa0805470:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_3:22114352-22114371 | Msa0805470:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_3:22114393-22114412 | Msa0805470:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_3:22114518-22114537 | Msa0805470:intron | 35.0% | |
| !! | TGTTTTTACCTCAGCTTCAT+GGG | - | chr5_3:22114672-22114691 | None:intergenic | 35.0% |
| !! | ATGTTTTTACCTCAGCTTCA+TGG | - | chr5_3:22114673-22114692 | None:intergenic | 35.0% |
| ACTTCATATCCTCATCTTGT+TGG | + | chr5_3:22114912-22114931 | Msa0805470:intron | 35.0% | |
| TCTACAAGAACTTTCCAGTT+TGG | - | chr5_3:22114964-22114983 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_3:22115287-22115306 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_3:22115285-22115304 | Msa0805470:CDS | 35.0% | |
| TCCATGCAGTAGTTTGACAA+TGG | + | chr5_3:22113715-22113734 | Msa0805470:CDS | 40.0% | |
| ACCATTGTCAAACTACTGCA+TGG | - | chr5_3:22113719-22113738 | None:intergenic | 40.0% | |
| ATGCAGTAGTTTGACAATGG+TGG | + | chr5_3:22113718-22113737 | Msa0805470:CDS | 40.0% | |
| GAGATGCTAAAAGGTGGAAA+GGG | - | chr5_3:22113808-22113827 | None:intergenic | 40.0% | |
| AGAGATGCTAAAAGGTGGAA+AGG | - | chr5_3:22113809-22113828 | None:intergenic | 40.0% | |
| GAGTAAGAGATGCTAAAAGG+TGG | - | chr5_3:22113814-22113833 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_3:22113820-22113839 | Msa0805470:CDS | 40.0% | |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_3:22114221-22114240 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_3:22114625-22114644 | Msa0805470:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_3:22114631-22114650 | None:intergenic | 40.0% | |
| ! | TTTTTACCTCAGCTTCATGG+GGG | - | chr5_3:22114670-22114689 | None:intergenic | 40.0% |
| ! | GTTTTTACCTCAGCTTCATG+GGG | - | chr5_3:22114671-22114690 | None:intergenic | 40.0% |
| GCACTGTGTGCATTTATAGT+GGG | + | chr5_3:22114818-22114837 | Msa0805470:intron | 40.0% | |
| CACTGTGTGCATTTATAGTG+GGG | + | chr5_3:22114819-22114838 | Msa0805470:intron | 40.0% | |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_3:22114884-22114903 | Msa0805470:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_3:22114895-22114914 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_3:22114924-22114943 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_3:22114941-22114960 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_3:22114947-22114966 | Msa0805470:intron | 40.0% | |
| ACAAGAACTTTCCAGTTTGG+TGG | - | chr5_3:22114961-22114980 | None:intergenic | 40.0% | |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_3:22115223-22115242 | Msa0805470:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_3:22115242-22115261 | Msa0805470:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_3:22115271-22115290 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_3:22115280-22115299 | Msa0805470:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_3:22115297-22115316 | None:intergenic | 40.0% | |
| TCCATGCAGTAGTTTGACAA+TGG | + | chr5_3:22113715-22113734 | Msa0805470:CDS | 40.0% | |
| ACCATTGTCAAACTACTGCA+TGG | - | chr5_3:22113719-22113738 | None:intergenic | 40.0% | |
| ATGCAGTAGTTTGACAATGG+TGG | + | chr5_3:22113718-22113737 | Msa0805470:CDS | 40.0% | |
| GAGATGCTAAAAGGTGGAAA+GGG | - | chr5_3:22113808-22113827 | None:intergenic | 40.0% | |
| AGAGATGCTAAAAGGTGGAA+AGG | - | chr5_3:22113809-22113828 | None:intergenic | 40.0% | |
| GAGTAAGAGATGCTAAAAGG+TGG | - | chr5_3:22113814-22113833 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_3:22113820-22113839 | Msa0805470:CDS | 40.0% | |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_3:22114221-22114240 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_3:22114625-22114644 | Msa0805470:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_3:22114631-22114650 | None:intergenic | 40.0% | |
| ! | TTTTTACCTCAGCTTCATGG+GGG | - | chr5_3:22114670-22114689 | None:intergenic | 40.0% |
| ! | GTTTTTACCTCAGCTTCATG+GGG | - | chr5_3:22114671-22114690 | None:intergenic | 40.0% |
| GCACTGTGTGCATTTATAGT+GGG | + | chr5_3:22114818-22114837 | Msa0805470:intron | 40.0% | |
| CACTGTGTGCATTTATAGTG+GGG | + | chr5_3:22114819-22114838 | Msa0805470:intron | 40.0% | |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_3:22114884-22114903 | Msa0805470:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_3:22114895-22114914 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_3:22114924-22114943 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_3:22114941-22114960 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_3:22114947-22114966 | Msa0805470:intron | 40.0% | |
| ACAAGAACTTTCCAGTTTGG+TGG | - | chr5_3:22114961-22114980 | None:intergenic | 40.0% | |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_3:22115223-22115242 | Msa0805470:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_3:22115242-22115261 | Msa0805470:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_3:22115271-22115290 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_3:22115280-22115299 | Msa0805470:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_3:22115297-22115316 | None:intergenic | 40.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_3:22113734-22113753 | Msa0805470:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_3:22114200-22114219 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_3:22114361-22114380 | Msa0805470:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_3:22114367-22114386 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_3:22114594-22114613 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_3:22114595-22114614 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_3:22114596-22114615 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_3:22114817-22114836 | Msa0805470:intron | 45.0% | |
| ! | TGTGTGCATTTATAGTGGGG+TGG | + | chr5_3:22114822-22114841 | Msa0805470:intron | 45.0% |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_3:22115251-22115270 | Msa0805470:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_3:22115259-22115278 | Msa0805470:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_3:22113734-22113753 | Msa0805470:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_3:22114200-22114219 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_3:22114361-22114380 | Msa0805470:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_3:22114367-22114386 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_3:22114594-22114613 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_3:22114595-22114614 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_3:22114596-22114615 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_3:22114817-22114836 | Msa0805470:intron | 45.0% | |
| ! | TGTGTGCATTTATAGTGGGG+TGG | + | chr5_3:22114822-22114841 | Msa0805470:intron | 45.0% |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_3:22115251-22115270 | Msa0805470:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_3:22115259-22115278 | Msa0805470:CDS | 45.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_3:22114368-22114387 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_3:22114593-22114612 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_3:22114643-22114662 | Msa0805470:CDS | 50.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_3:22114368-22114387 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_3:22114593-22114612 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_3:22114643-22114662 | Msa0805470:CDS | 50.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_3:22114587-22114606 | Msa0805470:CDS | 55.0% | |
| AGCTTCATGGGGGTCCACTT+GGG | - | chr5_3:22114660-22114679 | None:intergenic | 55.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_3:22114587-22114606 | Msa0805470:CDS | 55.0% | |
| AGCTTCATGGGGGTCCACTT+GGG | - | chr5_3:22114660-22114679 | None:intergenic | 55.0% | |
| CAGCTTCATGGGGGTCCACT+TGG | - | chr5_3:22114661-22114680 | None:intergenic | 60.0% | |
| AGTGGACCCCCATGAAGCTG+AGG | + | chr5_3:22114661-22114680 | Msa0805470:CDS | 60.0% | |
| CAGCTTCATGGGGGTCCACT+TGG | - | chr5_3:22114661-22114680 | None:intergenic | 60.0% | |
| AGTGGACCCCCATGAAGCTG+AGG | + | chr5_3:22114661-22114680 | Msa0805470:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 22113509 | 22115322 | 22113509 | ID=Msa0805470;Name=Msa0805470 |
| chr5_3 | mRNA | 22113509 | 22115322 | 22113509 | ID=Msa0805470-mRNA-1;Parent=Msa0805470;Name=Msa0805470-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.66|0.42|1|1|1|7|0|217 |
| chr5_3 | exon | 22113509 | 22113589 | 22113509 | ID=Msa0805470-mRNA-1:exon:8853;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22113707 | 22113841 | 22113707 | ID=Msa0805470-mRNA-1:exon:8854;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22113960 | 22114089 | 22113960 | ID=Msa0805470-mRNA-1:exon:8855;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22114195 | 22114243 | 22114195 | ID=Msa0805470-mRNA-1:exon:8856;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22114334 | 22114409 | 22114334 | ID=Msa0805470-mRNA-1:exon:8857;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22114578 | 22114682 | 22114578 | ID=Msa0805470-mRNA-1:exon:8858;Parent=Msa0805470-mRNA-1 |
| chr5_3 | exon | 22115245 | 22115322 | 22115245 | ID=Msa0805470-mRNA-1:exon:8859;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22113509 | 22113589 | 22113509 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22113707 | 22113841 | 22113707 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22113960 | 22114089 | 22113960 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22114195 | 22114243 | 22114195 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22114334 | 22114409 | 22114334 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22114578 | 22114682 | 22114578 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| chr5_3 | CDS | 22115245 | 22115322 | 22115245 | ID=Msa0805470-mRNA-1:cds;Parent=Msa0805470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
