AlfalfaGEDB | Msa0806710

M. sativa cultivar zhongmu-4 / Msa0806710

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0806710	PNX92671.1	59.763	169	42	3	1	143	26	194	1.70e-55	188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0806710	sp\|Q93YN1\|CRPK1_ARATH	49.398	166	56	4	6	143	26	191	3.23e-43	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0806710	A0A2K3MPD5	59.763	169	42	3	1	143	26	194	8.10e-56	188

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0806710	Msa0806740	0.893763	4.643268e-75	-8.615850e-47
Msa0806710	Msa1379180	0.935412	8.832943e-97	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0806710	MtrunA17_Chr2g0312561	56.707	164	45	3	6	143	28	191	1.70e-57	183
Msa0806710	MtrunA17_Chr8g0358911	59.172	169	43	3	1	143	26	194	3.55e-57	182
Msa0806710	MtrunA17_Chr2g0312571	55.689	167	46	4	5	143	30	196	3.02e-53	174
Msa0806710	MtrunA17_Chr8g0360591	51.829	164	53	3	6	143	29	192	9.88e-46	152
Msa0806710	MtrunA17_Chr8g0365311	50.617	162	47	3	15	143	91	252	2.22e-45	148
Msa0806710	MtrunA17_Chr8g0358901	41.827	208	51	4	6	143	14	221	3.56e-41	140
Msa0806710	MtrunA17_Chr5g0438071	40.000	165	73	3	5	143	644	808	2.52e-33	123
Msa0806710	MtrunA17_Chr2g0315061	38.788	165	75	3	5	143	21	185	1.85e-32	118
Msa0806710	MtrunA17_Chr2g0314991	40.000	165	73	3	5	143	195	359	3.16e-32	120
Msa0806710	MtrunA17_Chr2g0314991	37.576	165	77	3	5	143	1161	1325	1.19e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0806710	AT1G16670.1	49.398	166	56	4	6	143	26	191	3.28e-44	149
Msa0806710	AT3G09010.2	39.645	169	76	3	1	143	26	194	1.57e-34	122
Msa0806710	AT3G09010.1	39.645	169	76	3	1	143	26	194	7.45e-34	122
Msa0806710	AT1G53420.1	42.073	164	63	3	5	143	616	772	1.10e-31	119
Msa0806710	AT3G14840.2	38.788	165	75	3	5	143	656	820	2.33e-31	117
Msa0806710	AT1G56140.1	40.237	169	71	5	3	143	673	839	4.34e-31	117
Msa0806710	AT1G56120.3	40.237	169	71	5	3	143	524	690	1.48e-30	115
Msa0806710	AT1G29750.1	38.889	162	73	3	8	143	653	814	1.63e-30	115
Msa0806710	AT1G29750.2	38.889	162	73	3	8	143	668	829	1.68e-30	115
Msa0806710	AT1G29750.3	38.889	162	73	3	8	143	668	829	1.86e-30	115

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Find 20 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTAATATCTACTTTGAT+TGG	0.353910	5_3:-26569812	Msa0806710:CDS
AATTTGAAATCATTGGTGTA+AGG	0.462408	5_3:+26569670	None:intergenic
ACACCAATGATTTCAAATTT+TGG	0.214988	5_3:-26569666	Msa0806710:CDS
ACACGATGTAGGATATGTAT+TGG	0.482662	5_3:-26569786	Msa0806710:CDS
AGAAGAATATCACCGAATTT+TGG	0.201093	5_3:-26570810	Msa0806710:intron
AGACCAAAATTTGAAATCAT+TGG	0.349545	5_3:+26569663	None:intergenic
AGCCTTGCACAAACCCTTCT+AGG	0.357688	5_3:-26570764	Msa0806710:intron
AGCTTGCTGTGAATATTATT+TGG	0.264287	5_3:+26569723	None:intergenic
ATATGTATTGGAGTTGCACG+TGG	0.650244	5_3:-26569774	Msa0806710:CDS
CAAAATAAAACATGAAAATT+TGG	0.144592	5_3:-26570855	Msa0806710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGTTCCATAATAAAGCA+AGG	+	chr5_3:26569848-26569867	None:intergenic	30.0%
TATAGTGCATTTACCTAGAA+GGG	+	chr5_3:26570099-26570118	None:intergenic	30.0%
AATAGGAAGAAACATGAATC+TGG	-	chr5_3:26570461-26570480	Msa0806710:intron	30.0%
ATAGGAAGAAACATGAATCT+GGG	-	chr5_3:26570462-26570481	Msa0806710:intron	30.0%
GTACGTGCTAACATATTAAT+CGG	+	chr5_3:26570733-26570752	None:intergenic	30.0%
TACATTGAATCCTGATGAAA+TGG	+	chr5_3:26570980-26570999	None:intergenic	30.0%
TTATACTACATGCATATTGC+AGG	-	chr5_3:26571004-26571023	Msa0806710:intron	30.0%
TAAGGTTCCATAATAAAGCA+AGG	+	chr5_3:26569848-26569867	None:intergenic	30.0%
TATAGTGCATTTACCTAGAA+GGG	+	chr5_3:26570099-26570118	None:intergenic	30.0%
AATAGGAAGAAACATGAATC+TGG	-	chr5_3:26570461-26570480	Msa0806710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	26569659	26571210	26569659	ID=Msa0806710;Name=Msa0806710
chr5_3	mRNA	26569659	26571210	26569659	ID=Msa0806710-mRNA-1;Parent=Msa0806710;Name=Msa0806710-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0.33\|0\|1\|0\|0.25\|4\|0\|143
chr5_3	exon	26571103	26571210	26571103	ID=Msa0806710-mRNA-1:exon:9658;Parent=Msa0806710-mRNA-1
chr5_3	exon	26570843	26570915	26570843	ID=Msa0806710-mRNA-1:exon:9657;Parent=Msa0806710-mRNA-1
chr5_3	exon	26570765	26570827	26570765	ID=Msa0806710-mRNA-1:exon:9656;Parent=Msa0806710-mRNA-1
chr5_3	exon	26569659	26569843	26569659	ID=Msa0806710-mRNA-1:exon:9655;Parent=Msa0806710-mRNA-1
chr5_3	CDS	26571103	26571210	26571103	ID=Msa0806710-mRNA-1:cds;Parent=Msa0806710-mRNA-1
chr5_3	CDS	26570843	26570915	26570843	ID=Msa0806710-mRNA-1:cds;Parent=Msa0806710-mRNA-1
chr5_3	CDS	26570765	26570827	26570765	ID=Msa0806710-mRNA-1:cds;Parent=Msa0806710-mRNA-1
chr5_3	CDS	26569659	26569843	26569659	ID=Msa0806710-mRNA-1:cds;Parent=Msa0806710-mRNA-1

Gene Sequence

>Msa0806710

CTTTCAAGCACTCAGATAAAAGTTTATACCTATGAAGAACTAAAAACATCTAAAAATTTCAGTTTTGCTAATCGTATCGGGGGTGGTAATTTTGGTTCTGTCTATAAGGGGTTGAAGGAATTCTTAACCCATGTTAATGCGATTTTCAAAATAAAACATGAAAATTTGGTTGAACTATATGAATATCACCGAATTTTGGACTACAGATACCTTGAGAACAAGAGCCTTGCACAAACCCTTCTAGGTGGAGGTCAATGTAATATCTACTTTGATTGGCGAACACGATGTAGGATATGTATTGGAGTTGCACGTGGACTTGCCTTTCTTCATGAGCAAGAAAGACCAAATAATATTCACAGCAAGCTAACATGCAACAATATTCTACTTGACAAAGACCTTACACCAATGATTTCAAATTTTGGTCTTGCA

Protein sequence

>Msa0806710

LSSTQIKVYTYEELKTSKNFSFANRIGGGNFGSVYKGLKEFLTHVNAIFKIKHENLVELYEYHRILDYRYLENKSLAQTLLGGGQCNIYFDWRTRCRICIGVARGLAFLHEQERPNNIHSKLTCNNILLDKDLTPMISNFGLA