AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811120 MtrunA17_Chr5g0427651 75.502 249 35 2 1 223 1 249 8.57e-81 259
Msa0811120 MtrunA17_Chr3g0132791 42.083 240 95 12 1 222 1 214 3.38e-31 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811120 AT4G24480.2 32.472 271 121 9 1 217 1 263 2.41e-20 89.7
Msa0811120 AT4G24480.1 32.472 271 121 9 1 217 1 263 2.41e-20 89.7
Msa0811120 AT4G24480.3 32.472 271 121 9 1 217 1 263 2.72e-20 89.7

Find 225 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCAAGATTCACATATTT+TGG 0.083444 5_3:+40283918 None:intergenic
AAAACTTGTTGCTATCTTTA+TGG 0.109717 5_3:-40285879 Msa0811120:three_prime_UTR
AGCAAATCAGTTTCTTTATT+TGG 0.126811 5_3:+40284273 None:intergenic
AATCTTTATTACATAATTAT+AGG 0.164855 5_3:+40280147 None:intergenic
TTTCGGGCTGTCCAGATTTA+AGG 0.200762 5_3:-40282469 Msa0811120:three_prime_UTR
TGACTTTAGCAGCTTCTTTA+TGG 0.225672 5_3:+40280589 None:intergenic
TATGCTCAGGTGTGTGATTT+CGG 0.232608 5_3:-40282486 Msa0811120:intron
TAGTATTGATGGAACCTTAA+TGG 0.233102 5_3:-40280395 Msa0811120:three_prime_UTR
CCCAGTATTGGCCTCCCTTA+TGG 0.244449 5_3:-40281154 Msa0811120:three_prime_UTR
TCTCATTGTAAGAAATTTCT+TGG 0.257410 5_3:+40284033 None:intergenic
ATGCTCAGGTGTGTGATTTC+GGG 0.266639 5_3:-40282485 Msa0811120:intron
TTTATTTATGCAGGATCATT+TGG 0.282685 5_3:-40283751 Msa0811120:intron
TCTAACAATCAACTGTATTC+AGG 0.283652 5_3:-40284757 Msa0811120:intron
TCCATAAGGGAGGCCAATAC+TGG 0.287723 5_3:+40281153 None:intergenic
AAACTTGTTGCTATCTTTAT+GGG 0.295581 5_3:-40285878 Msa0811120:three_prime_UTR
GGGCCAGATTCCTCAATTAA+TGG 0.297580 5_3:-40284895 Msa0811120:three_prime_UTR
TATGTCTCGTGACTTGCTTC+TGG 0.301829 5_3:-40280178 Msa0811120:three_prime_UTR
CCTCCCTTATGGAATCTTGT+TGG 0.303802 5_3:-40281143 Msa0811120:three_prime_UTR
AAGTCTGATGTTTATAGTTT+TGG 0.311358 5_3:-40281414 Msa0811120:three_prime_UTR
GAAAGTATTTGCCTTAAATC+TGG 0.315219 5_3:+40282458 None:intergenic
TTGAGATCCCAGTGCACTAT+TGG 0.320552 5_3:+40282637 None:intergenic
TTGTCCTCAAAATCTGTTGC+TGG 0.333411 5_3:-40282435 Msa0811120:three_prime_UTR
CCTTAATGGTTGTTTGCAAC+TGG 0.336229 5_3:-40280381 Msa0811120:three_prime_UTR
TGGATGCTGGCCTGTGAATC+AGG 0.342327 5_3:+40282822 None:intergenic
TGAACCCAATGAGAGTTCTT+TGG 0.343520 5_3:-40286014 Msa0811120:three_prime_UTR
TGAGCATCTGCTGCCGGATT+CGG 0.345002 5_3:-40287199 Msa0811120:CDS
CATGAGCGACATGCTCCTTA+TGG 0.347848 5_3:+40280501 None:intergenic
CTCAAATGAGAAATTTGAAA+TGG 0.348440 5_3:+40284847 None:intergenic
GAATTTCCTTCCTACATTGA+TGG 0.349552 5_3:-40286050 Msa0811120:three_prime_UTR
TGTAATAATGCTTCAGAGGC+TGG 0.356384 5_3:+40284092 None:intergenic
CAGAGATTGGCGGATTATAT+AGG 0.358172 5_3:-40285312 Msa0811120:three_prime_UTR
ACGAGTACGCCTCCCGTGAT+TGG 0.359290 5_3:-40280534 Msa0811120:three_prime_UTR
CTCCCTTATGGAATCTTGTT+GGG 0.359987 5_3:-40281142 Msa0811120:three_prime_UTR
GCCGCATTGCTCGAGGTTGC+AGG 0.362188 5_3:-40285281 Msa0811120:three_prime_UTR
CTACTTGTTCCTGCTTTGAC+TGG 0.365162 5_3:+40283976 None:intergenic
ACATCAGACTTCTCGTTTGT+AGG 0.368339 5_3:+40281426 None:intergenic
GGGGAACCAGGAAATATTAC+TGG 0.369479 5_3:-40284916 Msa0811120:three_prime_UTR
CCTTGGATCGTGCATTTCAC+TGG 0.371828 5_3:+40282802 None:intergenic
TTCTCTCATTGTAGGCTAAA+GGG 0.374737 5_3:-40282687 Msa0811120:intron
AAGGGAAGTTCAGTGGTAAA+TGG 0.375926 5_3:-40284002 Msa0811120:three_prime_UTR
TCATGCTAACACATTTCATA+AGG 0.376322 5_3:-40280346 Msa0811120:three_prime_UTR
AGTATGTTGTTGACCTTGTT+GGG 0.376604 5_3:-40284936 Msa0811120:three_prime_UTR
TCCAAATGTGGTGCTCTTCA+TGG 0.376916 5_3:-40283011 Msa0811120:three_prime_UTR
TTACATGACATTCCATTTGT+TGG 0.377586 5_3:-40284074 Msa0811120:three_prime_UTR
CTTTCTTTCTTATCAACCCT+TGG 0.383900 5_3:-40286853 Msa0811120:intron
GCCAATACTGGGGAGACATT+TGG 0.386803 5_3:+40281165 None:intergenic
TGGTCATAAACTAGTATTGA+TGG 0.388370 5_3:-40280406 Msa0811120:three_prime_UTR
GCAAAAGATGGGCGATCGGC+AGG 0.391490 5_3:+40280626 None:intergenic
TTTCTCTCATTGTAGGCTAA+AGG 0.398065 5_3:-40282688 Msa0811120:intron
GAGACATTTGGAGGGATAGA+AGG 0.399972 5_3:+40281177 None:intergenic
CACTTCCAAAGAACTCTCAT+TGG 0.400138 5_3:+40286009 None:intergenic
TGCAGATCCCCTTGCTCCAC+AGG 0.400825 5_3:+40285627 None:intergenic
TAAAATATGTTGGCTATGTA+TGG 0.401857 5_3:-40280461 Msa0811120:three_prime_UTR
TCTGGCCCAGTAATATTTCC+TGG 0.407911 5_3:+40284910 None:intergenic
GAAGACACCTTCGCCGAATC+CGG 0.408833 5_3:+40287186 None:intergenic
CCCATGAAGAGCACCACATT+TGG 0.410475 5_3:+40283010 None:intergenic
CCAGTTGCAAACAACCATTA+AGG 0.410629 5_3:+40280381 None:intergenic
GCTTCAGTTGATAAAACTCC+TGG 0.412970 5_3:-40284225 Msa0811120:three_prime_UTR
ACTGAATCTTTACCAACAAA+TGG 0.415679 5_3:+40284062 None:intergenic
TTATTTATGCAGGATCATTT+GGG 0.416542 5_3:-40283750 Msa0811120:intron
GAGCTGTCGCATTTCAGAAT+AGG 0.418005 5_3:-40281203 Msa0811120:three_prime_UTR
TCCATTCCATGGTTGTTGTA+AGG 0.427541 5_3:+40281368 None:intergenic
ACAAGTAACCTGACCCTTGT+TGG 0.429048 5_3:-40280426 Msa0811120:three_prime_UTR
GAATGAACAAGAAGAAGAAA+AGG 0.430156 5_3:-40286968 Msa0811120:CDS
TCAACTATGCTGGCAAAAGA+TGG 0.430391 5_3:+40280614 None:intergenic
GTTCCTTCCCTGTGGAGCAA+GGG 0.432823 5_3:-40285635 Msa0811120:three_prime_UTR
GCTCCATTAATTGAGGAATC+TGG 0.433747 5_3:+40284892 None:intergenic
CTCAAAATCTGTTGCTGGAA+CGG 0.434544 5_3:-40282430 Msa0811120:intron
GCCATTCGTAATCTTCTCCT+TGG 0.435692 5_3:+40282785 None:intergenic
CAGGTTGAACTTTCACTTCA+CGG 0.437302 5_3:-40281531 Msa0811120:three_prime_UTR
CTAGGCAATTTCCAGAGAAA+AGG 0.442911 5_3:-40287566 Msa0811120:CDS
TGGACTGGCTTGAGATATCA+TGG 0.445535 5_3:-40283884 Msa0811120:three_prime_UTR
CGACTTCATAACCAGGGTGC+TGG 0.445882 5_3:-40283948 Msa0811120:three_prime_UTR
CGAGTACGCCTCCCGTGATT+GGG 0.449076 5_3:-40280533 Msa0811120:three_prime_UTR
TTTGATCTTCACAAGAATAG+AGG 0.450406 5_3:+40285236 None:intergenic
GCATCGCGCAATTCTCTTCA+AGG 0.451312 5_3:-40285514 Msa0811120:intron
AGATGGTTAGTAAGCGGTTG+AGG 0.457571 5_3:-40285593 Msa0811120:three_prime_UTR
ACTTCCAAAGAACTCTCATT+GGG 0.457630 5_3:+40286010 None:intergenic
GTTTATTTCGCCTGATTCAC+AGG 0.459329 5_3:-40282832 Msa0811120:three_prime_UTR
CATGCTAACACATTTCATAA+GGG 0.461915 5_3:-40280345 Msa0811120:three_prime_UTR
CAGCCCAACAAGATTCCATA+AGG 0.462865 5_3:+40281139 None:intergenic
ATGTTGATAGAAGATTTGAT+AGG 0.464269 5_3:-40287143 Msa0811120:CDS
GAGTATGTTGTTGACCTTGT+TGG 0.468190 5_3:-40284937 Msa0811120:three_prime_UTR
CCCGTGGACAAACTACCAAC+TGG 0.473966 5_3:+40285546 None:intergenic
GACTTCATAACCAGGGTGCT+GGG 0.477831 5_3:-40283947 Msa0811120:three_prime_UTR
TCCAGTTGGTAGTTTGTCCA+CGG 0.479090 5_3:-40285547 Msa0811120:three_prime_UTR
AGATCCCAGTGCACTATTGG+AGG 0.479354 5_3:+40282640 None:intergenic
GGTTCCTTCCCTGTGGAGCA+AGG 0.481640 5_3:-40285636 Msa0811120:three_prime_UTR
TTCTGCTTCTGAGAATGCCT+TGG 0.485336 5_3:-40285921 Msa0811120:three_prime_UTR
TCGTGCATTTCACTGGATGC+TGG 0.485741 5_3:+40282809 None:intergenic
TTGGTGCTTGTTGAAAAGCT+TGG 0.485912 5_3:-40285902 Msa0811120:three_prime_UTR
GTTTATGACCAACAAGGGTC+AGG 0.487768 5_3:+40280418 None:intergenic
CTTTATGGTCTCAACTATGC+TGG 0.489632 5_3:+40280604 None:intergenic
AGGTTGCAGGTACTGTGCTT+CGG 0.491574 5_3:-40285268 Msa0811120:three_prime_UTR
TACAATGAGATCATTGCAAA+GGG 0.494339 5_3:-40284020 Msa0811120:three_prime_UTR
TCCAAATGTCTCCCCAGTAT+TGG 0.494916 5_3:-40281166 Msa0811120:three_prime_UTR
GTTGACCTTGTTGGGGAACC+AGG 0.495325 5_3:-40284928 Msa0811120:three_prime_UTR
TGCAATGACATGGAGGAAGA+AGG 0.496599 5_3:-40286073 Msa0811120:three_prime_UTR
GAAGGTGTCTTCGCCGGAGA+AGG 0.496866 5_3:-40287175 Msa0811120:CDS
TGAAGCCTCCAATAGTGCAC+TGG 0.498133 5_3:-40282645 Msa0811120:three_prime_UTR
ATCAAAGAACGCATTGGTGC+TGG 0.498755 5_3:-40283849 Msa0811120:intron
GCTTTAAGCGCCATCAATGT+AGG 0.504010 5_3:+40286040 None:intergenic
GGATCGTGAGCATCTGCTGC+CGG 0.506553 5_3:-40287205 Msa0811120:CDS
TTCCTTCCCTGTGGAGCAAG+GGG 0.509142 5_3:-40285634 Msa0811120:three_prime_UTR
CATGTGTATCCTCAGGTGGT+TGG 0.509740 5_3:-40281225 Msa0811120:intron
GGGATTGTTGTAATTGTAAG+TGG 0.510700 5_3:-40280260 Msa0811120:three_prime_UTR
CTATGAACTACAACAAGCCT+TGG 0.513723 5_3:-40286884 Msa0811120:CDS
ACATCAACAGCATCCTTCTC+CGG 0.514678 5_3:+40287162 None:intergenic
CCATAAGGGAGGCCAATACT+GGG 0.514867 5_3:+40281154 None:intergenic
CACATATGCTCCATTAATTG+AGG 0.521191 5_3:+40284885 None:intergenic
AATACTGGGGAGACATTTGG+AGG 0.528815 5_3:+40281168 None:intergenic
CCAAATGTGGTGCTCTTCAT+GGG 0.530102 5_3:-40283010 Msa0811120:three_prime_UTR
TTTCTGTCGCTAAAATATGT+TGG 0.531257 5_3:-40280471 Msa0811120:three_prime_UTR
GTAATAATGCTTCAGAGGCT+GGG 0.531732 5_3:+40284093 None:intergenic
GGTTCATTCCACCCAATCAC+GGG 0.532325 5_3:+40280522 None:intergenic
CAGTGTGTTGTGCTTCCAGT+TGG 0.532963 5_3:-40285561 Msa0811120:three_prime_UTR
TTACAATGAGATCATTGCAA+AGG 0.535482 5_3:-40284021 Msa0811120:three_prime_UTR
ATGGCTCCAGAGTTTCTTCG+TGG 0.536115 5_3:-40281453 Msa0811120:three_prime_UTR
GGTTCTCCACGAAGAAACTC+TGG 0.544195 5_3:+40281447 None:intergenic
CAACTATGCTGGCAAAAGAT+GGG 0.544705 5_3:+40280615 None:intergenic
TTGTGAAGATCAAAGATGAC+AGG 0.548212 5_3:-40285227 Msa0811120:three_prime_UTR
TTCGGCGAAGGTGTCTTCGC+CGG 0.548758 5_3:-40287181 Msa0811120:CDS
TGTTGATAGAAGATTTGATA+GGG 0.549841 5_3:-40287142 Msa0811120:CDS
AGGAGCATGTCGCTCATGAT+CGG 0.550012 5_3:-40280496 Msa0811120:three_prime_UTR
GACGATGACGGCGGTGATGG+TGG 0.550769 5_3:+40287301 None:intergenic
AGCCAGTCCATTGCTAGTGA+TGG 0.551807 5_3:+40283897 None:intergenic
AAATGGTATCCAGTCAAAGC+AGG 0.553596 5_3:-40283985 Msa0811120:three_prime_UTR
CCAGTTGGTAGTTTGTCCAC+GGG 0.554032 5_3:-40285546 Msa0811120:three_prime_UTR
AACTCTGGAGCCATCCACTC+AGG 0.554183 5_3:+40281462 None:intergenic
TGGTTCATTCCACCCAATCA+CGG 0.556199 5_3:+40280521 None:intergenic
TACATTGATGGCGCTTAAAG+CGG 0.556772 5_3:-40286038 Msa0811120:three_prime_UTR
GAAAGAAAGCCTCTTTGCCA+AGG 0.557707 5_3:+40286867 None:intergenic
CCAGTGAAATGCACGATCCA+AGG 0.558245 5_3:-40282802 Msa0811120:three_prime_UTR
TTTGTTGATGCAGAGATTGG+CGG 0.559377 5_3:-40285322 Msa0811120:intron
TCTTGAACCATCACTAGCAA+TGG 0.564083 5_3:-40283904 Msa0811120:three_prime_UTR
GATGACGGCGGTGATGGTGG+TGG 0.564497 5_3:+40287304 None:intergenic
TCTGCTGCCGGATTCGGCGA+AGG 0.564941 5_3:-40287193 Msa0811120:CDS
GAGGACGATGACGGCGGTGA+TGG 0.565458 5_3:+40287298 None:intergenic
TGAGAAATTTGAAATGGAGA+AGG 0.565947 5_3:+40284853 None:intergenic
AACCATCACTAGCAATGGAC+TGG 0.566572 5_3:-40283899 Msa0811120:three_prime_UTR
TTGCACATCACCCACAAGTA+CGG 0.567949 5_3:+40286091 None:intergenic
CTACAAGATAAAAGAGCTTG+AGG 0.569825 5_3:+40280229 None:intergenic
TTGCCGTGCCGCATTGCTCG+AGG 0.576314 5_3:-40285288 Msa0811120:three_prime_UTR
GGACAGTGTACCGTGCTGAA+TGG 0.576758 5_3:-40283729 Msa0811120:three_prime_UTR
ACTCTTTCAACTGATCGTCA+TGG 0.577073 5_3:+40283388 None:intergenic
GTATGTTGTTGACCTTGTTG+GGG 0.577494 5_3:-40284935 Msa0811120:three_prime_UTR
TACAACAAGCCTTGGCAAAG+AGG 0.577536 5_3:-40286876 Msa0811120:CDS
GAATGGACTTAGCCATGCCC+AGG 0.578828 5_3:-40281352 Msa0811120:intron
TACACTGACAAGATTGCAGA+TGG 0.579916 5_3:-40286139 Msa0811120:exon
AACTTGTTGCTATCTTTATG+GGG 0.581303 5_3:-40285877 Msa0811120:intron
GCAATGACATGGAGGAAGAA+GGG 0.582057 5_3:-40286072 Msa0811120:three_prime_UTR
AGCCCAACAAGATTCCATAA+GGG 0.583261 5_3:+40281140 None:intergenic
ATTGGGTGGAATGAACCATA+AGG 0.583586 5_3:-40280516 Msa0811120:three_prime_UTR
ACCTTACAACAACCATGGAA+TGG 0.583688 5_3:-40281369 Msa0811120:three_prime_UTR
AGATCATATTCTACATGAAG+AGG 0.585003 5_3:-40287235 Msa0811120:CDS
CATGTAGAATATGATCTGAT+CGG 0.585719 5_3:+40287241 None:intergenic
ATCCCCTTGCTCCACAGGGA+AGG 0.586648 5_3:+40285632 None:intergenic
TCAACGAGTTTACCTGGGCA+TGG 0.589325 5_3:+40281340 None:intergenic
CAAAAGATGGGCGATCGGCA+GGG 0.591018 5_3:+40280627 None:intergenic
GTCATGTAATAATGCTTCAG+AGG 0.593398 5_3:+40284088 None:intergenic
CGATGAGAAGAACTATGCTA+AGG 0.594537 5_3:-40286920 Msa0811120:CDS
CAACCTCGAGCAATGCGGCA+CGG 0.594862 5_3:+40285285 None:intergenic
TATTTCCTGGTTCCCCAACA+AGG 0.595976 5_3:+40284923 None:intergenic
GAAGCCTCCAATAGTGCACT+GGG 0.596594 5_3:-40282644 Msa0811120:three_prime_UTR
TGATTAAAACTTATAACTTG+AGG 0.596824 5_3:+40284787 None:intergenic
CTGCGGATCAAAGAACGCAT+TGG 0.597029 5_3:-40283855 Msa0811120:three_prime_UTR
GGTGATGATGATGCTGATGC+CGG 0.600873 5_3:+40287268 None:intergenic
GCATGGCTAAGTCCATTCCA+TGG 0.604826 5_3:+40281357 None:intergenic
GCTGGCAAAAGATGGGCGAT+CGG 0.610221 5_3:+40280622 None:intergenic
AGAAAATCGACTTCATAACC+AGG 0.610279 5_3:-40283955 Msa0811120:three_prime_UTR
GTTGAAAGAGTTCTTACGAG+AGG 0.610688 5_3:-40283376 Msa0811120:intron
GTTTGTCCACGGGACTCTGT+AGG 0.613139 5_3:-40285536 Msa0811120:three_prime_UTR
GCAGATCCCCTTGCTCCACA+GGG 0.614608 5_3:+40285628 None:intergenic
TGCTGATGCCGGTGTTGATG+AGG 0.616204 5_3:+40287279 None:intergenic
TGGGAATGAATCCGTACTTG+TGG 0.616564 5_3:-40286102 Msa0811120:three_prime_UTR
TGAAGAGCACCACATTTGGA+TGG 0.617370 5_3:+40283014 None:intergenic
TAGTGACAGAGTATTTGCCC+AGG 0.619832 5_3:-40282958 Msa0811120:intron
GATGCTGCATCATCCACGTA+GGG 0.620434 5_3:+40284811 None:intergenic
TGTGGTGCTCTTCATGGGTG+CGG 0.620498 5_3:-40283005 Msa0811120:three_prime_UTR
AAGATGACAGGCAACTGTCA+AGG 0.620877 5_3:-40285215 Msa0811120:intron
GTACGCCTCCCGTGATTGGG+TGG 0.623100 5_3:-40280530 Msa0811120:three_prime_UTR
GTGGGTGATGTGCAATGACA+TGG 0.624923 5_3:-40286083 Msa0811120:three_prime_UTR
AAAATCAGCAGTCAAATCAA+CGG 0.625086 5_3:-40287499 Msa0811120:CDS
GGGAACCAGGAAATATTACT+GGG 0.628936 5_3:-40284915 Msa0811120:three_prime_UTR
CTGATCCATGCCATTCAGCA+CGG 0.630160 5_3:+40283719 None:intergenic
CATTGCAAAGGGAAGTTCAG+TGG 0.632388 5_3:-40284009 Msa0811120:three_prime_UTR
TCCAAGGAGAAGATTACGAA+TGG 0.633042 5_3:-40282786 Msa0811120:three_prime_UTR
AGATATCATGGGATGAGCTG+CGG 0.633760 5_3:-40283872 Msa0811120:three_prime_UTR
ATTACGAATGGCTCTAGACG+TGG 0.633771 5_3:-40282774 Msa0811120:intron
TTGGAATATCCCCAGCACCC+TGG 0.634335 5_3:+40283937 None:intergenic
TAAGCGCCATCAATGTAGGA+AGG 0.635856 5_3:+40286044 None:intergenic
ACTTCATAACCAGGGTGCTG+GGG 0.638614 5_3:-40283946 Msa0811120:three_prime_UTR
TATTCTACATGAAGAGGACG+AGG 0.638629 5_3:-40287229 Msa0811120:CDS
TAGTGACCTTACAACAACCA+TGG 0.641251 5_3:-40281374 Msa0811120:three_prime_UTR
TACTAGTTTATGACCAACAA+GGG 0.644209 5_3:+40280413 None:intergenic
GGTGGAAGATGGTTAGTAAG+CGG 0.644238 5_3:-40285599 Msa0811120:three_prime_UTR
GGGAATGAATCCGTACTTGT+GGG 0.644522 5_3:-40286101 Msa0811120:three_prime_UTR
GAATATGATCTGATCGGTGA+CGG 0.648976 5_3:+40287247 None:intergenic
GTCATCGTCCTCATCAACAC+CGG 0.655239 5_3:-40287287 Msa0811120:CDS
GTGTACCGTGCTGAATGGCA+TGG 0.657179 5_3:-40283724 Msa0811120:three_prime_UTR
AAAATCTCAATTGCCCTACG+TGG 0.658136 5_3:-40284824 Msa0811120:three_prime_UTR
GATTCTTATTGATAGACGCG+AGG 0.659542 5_3:-40285987 Msa0811120:three_prime_UTR
TCTACATGAAGAGGACGAGG+AGG 0.660634 5_3:-40287226 Msa0811120:CDS
GGTGTTGATGAGGACGATGA+CGG 0.663220 5_3:+40287289 None:intergenic
GAAAATCGACTTCATAACCA+GGG 0.668500 5_3:-40283954 Msa0811120:three_prime_UTR
CCAACAAGATTCCATAAGGG+AGG 0.671201 5_3:+40281143 None:intergenic
AGATGCTGCATCATCCACGT+AGG 0.674401 5_3:+40284810 None:intergenic
GAAAAGGGGTTCCTTCCCTG+TGG 0.675715 5_3:-40285643 Msa0811120:intron
CTACAAATGAAGTTACAACA+AGG 0.676610 5_3:-40286990 Msa0811120:CDS
GGTGAAAAGTTCCGAAACAG+CGG 0.678439 5_3:+40287401 None:intergenic
TCATTCCACCCAATCACGGG+AGG 0.681849 5_3:+40280525 None:intergenic
ACGTGTCCGCCATCCAAATG+TGG 0.684843 5_3:-40283023 Msa0811120:three_prime_UTR
CATAAGGGAGGCCAATACTG+GGG 0.690145 5_3:+40281155 None:intergenic
TCTGTCACTATAGATAGATG+AGG 0.694310 5_3:+40282971 None:intergenic
GGACTGGCTTGAGATATCAT+GGG 0.699073 5_3:-40283883 Msa0811120:three_prime_UTR
TCAGTTGATAAAACTCCTGG+AGG 0.705547 5_3:-40284222 Msa0811120:intron
GAAGCTGCTAAAGTCACCAG+CGG 0.706962 5_3:-40280582 Msa0811120:three_prime_UTR
AGAGCACCACATTTGGATGG+CGG 0.707353 5_3:+40283017 None:intergenic
ATACTAGTTTATGACCAACA+AGG 0.709827 5_3:+40280412 None:intergenic
ATACTGGGGAGACATTTGGA+GGG 0.720295 5_3:+40281169 None:intergenic
TCACTATCGAGATTGTCGAG+TGG 0.729705 5_3:-40287114 Msa0811120:CDS
ACCTGCAACCTCGAGCAATG+CGG 0.741416 5_3:+40285280 None:intergenic
GGTGATGTGCAATGACATGG+AGG 0.746191 5_3:-40286080 Msa0811120:three_prime_UTR
GCGATGCCTACAGAGTCCCG+TGG 0.768685 5_3:+40285530 None:intergenic
GTTGATGAGGACGATGACGG+CGG 0.781710 5_3:+40287292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAAAAAAAAATTA+AGG + chr5_3:40285176-40285195 None:intergenic 0.0%
!! AATCTTTATTACATAATTAT+AGG + chr5_3:40287570-40287589 None:intergenic 10.0%
!! CATAAGAATAATAATAATCA+TGG - chr5_3:40281890-40281909 Msa0811120:intron 15.0%
!! AATTAACAAATAAACTTGAT+GGG + chr5_3:40282560-40282579 None:intergenic 15.0%
!! AAATTAACAAATAAACTTGA+TGG + chr5_3:40282561-40282580 None:intergenic 15.0%
!! ACATTTGTTTAATCAATATT+AGG + chr5_3:40284372-40284391 None:intergenic 15.0%
!! AAATTCATTGTATTTAGAAA+AGG + chr5_3:40284536-40284555 None:intergenic 15.0%
!!! AATTTCAAGTTTAAATTTTG+AGG - chr5_3:40285426-40285445 Msa0811120:intron 15.0%
!!! AAAAAGTGAATTACTTATTT+TGG - chr5_3:40287593-40287612 Msa0811120:CDS 15.0%
!!! ATAATGGATTTGTTAGAATT+AGG - chr5_3:40281296-40281315 Msa0811120:intron 20.0%
!!! TAATGGATTTGTTAGAATTA+GGG - chr5_3:40281297-40281316 Msa0811120:intron 20.0%
!!! AGATGGATTTTATAACATAT+TGG - chr5_3:40281592-40281611 Msa0811120:intron 20.0%
!!! GATGGATTTTATAACATATT+GGG - chr5_3:40281593-40281612 Msa0811120:intron 20.0%
!!! TATCGATTTATTTATGTGTT+TGG - chr5_3:40282036-40282055 Msa0811120:intron 20.0%
!! ATAAATACCTATCATATAAG+AGG - chr5_3:40282306-40282325 Msa0811120:intron 20.0%
!!! TTGTTAATTTTATGTTTTCC+TGG - chr5_3:40282571-40282590 Msa0811120:intron 20.0%
!!! GTAAATAATCTATCTAAAAC+CGG + chr5_3:40282613-40282632 None:intergenic 20.0%
!! TTAGATTGCTCATATATATT+TGG - chr5_3:40282656-40282675 Msa0811120:three_prime_UTR 20.0%
!! TGATTAAAACTTATAACTTG+AGG + chr5_3:40282930-40282949 None:intergenic 20.0%
!! TTTATACCCTACTATAAATA+GGG + chr5_3:40283107-40283126 None:intergenic 20.0%
!! ATTTATACCCTACTATAAAT+AGG + chr5_3:40283108-40283127 None:intergenic 20.0%
!! CAATTAATACTTACATTCAA+TGG + chr5_3:40284466-40284485 None:intergenic 20.0%
!!! TAAGTATTAATTGACTCATT+AGG - chr5_3:40284473-40284492 Msa0811120:intron 20.0%
!!! AAGTATTAATTGACTCATTA+GGG - chr5_3:40284474-40284493 Msa0811120:intron 20.0%
!!! GATATTATTTTCATTGATTC+AGG - chr5_3:40284655-40284674 Msa0811120:intron 20.0%
!! ATTTAGTTAACTACCAAAAA+AGG + chr5_3:40284789-40284808 None:intergenic 20.0%
!!! TAGTTAACTAAATGTGTTTT+AGG - chr5_3:40284796-40284815 Msa0811120:three_prime_UTR 20.0%
!! CTACCAGAATAATATTTATT+CGG + chr5_3:40285405-40285424 None:intergenic 20.0%
!! ATTATATCCTCTTACTTTAA+AGG + chr5_3:40285508-40285527 None:intergenic 20.0%
!! CAGTATGAAAAATCTTATAT+GGG + chr5_3:40285856-40285875 None:intergenic 20.0%
!! TCAGTATGAAAAATCTTATA+TGG + chr5_3:40285857-40285876 None:intergenic 20.0%
!! TCTTAAACTATTGAAATTAC+AGG - chr5_3:40286022-40286041 Msa0811120:three_prime_UTR 20.0%
!! TTCTCTATGATGTAATATAT+AGG - chr5_3:40286118-40286137 Msa0811120:three_prime_UTR 20.0%
!! AGATAAATGTAATGTTTGAT+TGG - chr5_3:40286726-40286745 Msa0811120:intron 20.0%
!! GATAAATGTAATGTTTGATT+GGG - chr5_3:40286727-40286746 Msa0811120:intron 20.0%
!! AATATTTAGTAATCCCAAAA+TGG + chr5_3:40286810-40286829 None:intergenic 20.0%
!!! TTGATTTTAATTGTTACTCT+TGG - chr5_3:40286881-40286900 Msa0811120:CDS 20.0%
!!! AATTTTTCCTAAAGCAAAAA+AGG + chr5_3:40286938-40286957 None:intergenic 20.0%
!!! GTTTTTTGATAGATTGTCTT+TGG + chr5_3:40280292-40280311 None:intergenic 25.0%
!! ATGTTGATAGAAGATTTGAT+AGG - chr5_3:40280571-40280590 Msa0811120:three_prime_UTR 25.0%
!! TGTTGATAGAAGATTTGATA+GGG - chr5_3:40280572-40280591 Msa0811120:three_prime_UTR 25.0%
! TTTGTTTAGTGGTATCATAA+TGG - chr5_3:40281280-40281299 Msa0811120:intron 25.0%
!! TAGTATCATGTACATTTTGT+AGG - chr5_3:40281429-40281448 Msa0811120:three_prime_UTR 25.0%
!!! AAAACTTGTTGCTATCTTTA+TGG - chr5_3:40281835-40281854 Msa0811120:intron 25.0%
!!! AAACTTGTTGCTATCTTTAT+GGG - chr5_3:40281836-40281855 Msa0811120:intron 25.0%
!!! TTTATTTATGTGTTTGGTGT+TGG - chr5_3:40282042-40282061 Msa0811120:intron 25.0%
!! AGGTAAATCATTTTGTTACA+TGG - chr5_3:40282220-40282239 Msa0811120:intron 25.0%
! TTTGTTACATGGTGATTATT+TGG - chr5_3:40282231-40282250 Msa0811120:intron 25.0%
! GAATAACAATCAATATCTCA+GGG + chr5_3:40282353-40282372 None:intergenic 25.0%
! TGAATAACAATCAATATCTC+AGG + chr5_3:40282354-40282373 None:intergenic 25.0%
!! TATTGATTGTTATTCACTGT+TGG - chr5_3:40282358-40282377 Msa0811120:intron 25.0%
!! GCTCATATATATTTGGATTT+TGG - chr5_3:40282663-40282682 Msa0811120:three_prime_UTR 25.0%
! AATTGTTTAATTCCTTTGTC+AGG - chr5_3:40282754-40282773 Msa0811120:intron 25.0%
! ATTGTTTAATTCCTTTGTCA+GGG - chr5_3:40282755-40282774 Msa0811120:intron 25.0%
! CTCAAATGAGAAATTTGAAA+TGG + chr5_3:40282870-40282889 None:intergenic 25.0%
! TAAAACAGTTGGAAGTTAAA+TGG + chr5_3:40283006-40283025 None:intergenic 25.0%
!!! AATAGTAGTTCTAAAACAGT+TGG + chr5_3:40283017-40283036 None:intergenic 25.0%
!! TGATGCATTTTTGTTCATTT+AGG - chr5_3:40283064-40283083 Msa0811120:intron 25.0%
! ATTTGAACCCTATTTATAGT+AGG - chr5_3:40283097-40283116 Msa0811120:intron 25.0%
! TTTGAACCCTATTTATAGTA+GGG - chr5_3:40283098-40283117 Msa0811120:intron 25.0%
!!! GTATAAATAGTTTTACCAAG+TGG - chr5_3:40283120-40283139 Msa0811120:intron 25.0%
!! ATACTCCATATGAAACTTTT+GGG + chr5_3:40283277-40283296 None:intergenic 25.0%
! AGCAAATCAGTTTCTTTATT+TGG + chr5_3:40283444-40283463 None:intergenic 25.0%
! TCTCATTGTAAGAAATTTCT+TGG + chr5_3:40283684-40283703 None:intergenic 25.0%
! TTTATTTATGCAGGATCATT+TGG - chr5_3:40283963-40283982 Msa0811120:three_prime_UTR 25.0%
! TTATTTATGCAGGATCATTT+GGG - chr5_3:40283964-40283983 Msa0811120:three_prime_UTR 25.0%
!! TTTTTCTTCATGCTGAAATT+TGG - chr5_3:40284038-40284057 Msa0811120:three_prime_UTR 25.0%
! GAGTTAATTATGCTTTGTAA+TGG - chr5_3:40284102-40284121 Msa0811120:three_prime_UTR 25.0%
! TGTAGTTAATTGCATGAATA+AGG - chr5_3:40284182-40284201 Msa0811120:intron 25.0%
!!! CTTCTCTGTTTTTATCATTT+TGG - chr5_3:40284239-40284258 Msa0811120:three_prime_UTR 25.0%
!!! ATCTGATGTTTTAAAATTGC+AGG - chr5_3:40284269-40284288 Msa0811120:three_prime_UTR 25.0%
! TCTGAGTTATGCTTTAATTA+AGG - chr5_3:40284423-40284442 Msa0811120:intron 25.0%
! CTGAGTTATGCTTTAATTAA+GGG - chr5_3:40284424-40284443 Msa0811120:intron 25.0%
! TGAGTTATGCTTTAATTAAG+GGG - chr5_3:40284425-40284444 Msa0811120:intron 25.0%
!! TTTTTCTCAAATTTATGCTC+AGG - chr5_3:40285215-40285234 Msa0811120:intron 25.0%
! TAATATTTATTCGGAAGCAA+TGG + chr5_3:40285396-40285415 None:intergenic 25.0%
! CTTCCGAATAAATATTATTC+TGG - chr5_3:40285399-40285418 Msa0811120:intron 25.0%
! ATAAAACAACTTCAGAAATC+AGG + chr5_3:40285531-40285550 None:intergenic 25.0%
! TCAATAAGGAGAGATTAAAA+TGG + chr5_3:40285766-40285785 None:intergenic 25.0%
!!! TTGTTTTGACAACTTCAATA+AGG + chr5_3:40285780-40285799 None:intergenic 25.0%
! AATCTTATATGGGAAATAGT+GGG + chr5_3:40285846-40285865 None:intergenic 25.0%
! AAATCTTATATGGGAAATAG+TGG + chr5_3:40285847-40285866 None:intergenic 25.0%
! TCATACTGAATTGAAAAATG+TGG - chr5_3:40285868-40285887 Msa0811120:intron 25.0%
! ATTTATTGATCACCACTATA+TGG - chr5_3:40285951-40285970 Msa0811120:three_prime_UTR 25.0%
! TCTTAATGATGACAACTAAA+TGG - chr5_3:40286061-40286080 Msa0811120:three_prime_UTR 25.0%
!!! ACAAAGTGTTTTATAATACC+CGG - chr5_3:40286085-40286104 Msa0811120:three_prime_UTR 25.0%
! CCTGCAAAATATTAATAGAA+TGG + chr5_3:40286167-40286186 None:intergenic 25.0%
!! CCATTCTATTAATATTTTGC+AGG - chr5_3:40286164-40286183 Msa0811120:intron 25.0%
!! AAGTCTGATGTTTATAGTTT+TGG - chr5_3:40286300-40286319 Msa0811120:intron 25.0%
!!! GTTGAGTAATTATTTTTGTC+TGG - chr5_3:40286392-40286411 Msa0811120:intron 25.0%
!!! TGTTTACTTGCTTTATTTTC+AGG - chr5_3:40286604-40286623 Msa0811120:intron 25.0%
! GAATTCCTAGTTTATTAGAA+AGG + chr5_3:40286684-40286703 None:intergenic 25.0%
! TTCTAATAAACTAGGAATTC+TGG - chr5_3:40286684-40286703 Msa0811120:intron 25.0%
!! GTCATATCAAATTCTGTTTT+TGG + chr5_3:40286851-40286870 None:intergenic 25.0%
!!! TGCTTTAGGAAAAATTATCA+TGG - chr5_3:40286942-40286961 Msa0811120:CDS 25.0%
!! TAAAATATGTTGGCTATGTA+TGG - chr5_3:40287253-40287272 Msa0811120:CDS 25.0%
!! AAAAAAAAAAGGTGCGAATA+TGG - chr5_3:40287433-40287452 Msa0811120:CDS 25.0%
!! AAAAAAAAAGGTGCGAATAT+GGG - chr5_3:40287434-40287453 Msa0811120:CDS 25.0%
!! TTGTAATTGTAAGTGGTTTT+TGG - chr5_3:40287461-40287480 Msa0811120:CDS 25.0%
AAAATCAGCAGTCAAATCAA+CGG - chr5_3:40280215-40280234 Msa0811120:three_prime_UTR 30.0%
!!! GTTTTGAAACTTTTTACCGT+CGG + chr5_3:40280337-40280356 None:intergenic 30.0%
CATGTAGAATATGATCTGAT+CGG + chr5_3:40280476-40280495 None:intergenic 30.0%
AGATCATATTCTACATGAAG+AGG - chr5_3:40280479-40280498 Msa0811120:three_prime_UTR 30.0%
CTACAAATGAAGTTACAACA+AGG - chr5_3:40280724-40280743 Msa0811120:intron 30.0%
GAATGAACAAGAAGAAGAAA+AGG - chr5_3:40280746-40280765 Msa0811120:intron 30.0%
! TTGATACTGGATTAGAAACA+TGG - chr5_3:40281004-40281023 Msa0811120:intron 30.0%
! TGATACTGGATTAGAAACAT+GGG - chr5_3:40281005-40281024 Msa0811120:intron 30.0%
TTAGTGCATGTTTGATATCA+AGG - chr5_3:40281087-40281106 Msa0811120:intron 30.0%
! GATATCAAGGTGTATTTTGT+CGG - chr5_3:40281100-40281119 Msa0811120:intron 30.0%
!!! ACTCATCATGTTTTGTTTAG+TGG - chr5_3:40281269-40281288 Msa0811120:intron 30.0%
AGCAAAACCTACAATCAATA+AGG + chr5_3:40281330-40281349 None:intergenic 30.0%
!! GGTTTTGTGATTTTTGTATC+AGG - chr5_3:40281535-40281554 Msa0811120:intron 30.0%
!! AACTTGTTGCTATCTTTATG+GGG - chr5_3:40281837-40281856 Msa0811120:intron 30.0%
TAGACAATTGTGATCTAGAT+CGG - chr5_3:40281941-40281960 Msa0811120:intron 30.0%
TTACATGGTGATTATTTGGA+TGG - chr5_3:40282235-40282254 Msa0811120:intron 30.0%
AATACCTATCATATAAGAGG+AGG - chr5_3:40282309-40282328 Msa0811120:intron 30.0%
ATACCTATCATATAAGAGGA+GGG - chr5_3:40282310-40282329 Msa0811120:intron 30.0%
TTTGATCTTCACAAGAATAG+AGG + chr5_3:40282481-40282500 None:intergenic 30.0%
! TGAGAAATTTGAAATGGAGA+AGG + chr5_3:40282864-40282883 None:intergenic 30.0%
TCTAACAATCAACTGTATTC+AGG - chr5_3:40282957-40282976 Msa0811120:intron 30.0%
! TACTCCATATGAAACTTTTG+GGG + chr5_3:40283276-40283295 None:intergenic 30.0%
! CATACTCCATATGAAACTTT+TGG + chr5_3:40283278-40283297 None:intergenic 30.0%
CAAAAGTTTCATATGGAGTA+TGG - chr5_3:40283276-40283295 Msa0811120:intron 30.0%
TTACATGACATTCCATTTGT+TGG - chr5_3:40283640-40283659 Msa0811120:intron 30.0%
ACTGAATCTTTACCAACAAA+TGG + chr5_3:40283655-40283674 None:intergenic 30.0%
TTACAATGAGATCATTGCAA+AGG - chr5_3:40283693-40283712 Msa0811120:intron 30.0%
TACAATGAGATCATTGCAAA+GGG - chr5_3:40283694-40283713 Msa0811120:intron 30.0%
! GGTTCAAGATTCACATATTT+TGG + chr5_3:40283799-40283818 None:intergenic 30.0%
!! TACTGCTCTTTTATTTATGC+AGG - chr5_3:40283954-40283973 Msa0811120:three_prime_UTR 30.0%
AATAAAATATCCAGTCGTCA+TGG + chr5_3:40284216-40284235 None:intergenic 30.0%
GGTCTATCTATTTATTGCAT+AGG - chr5_3:40284399-40284418 Msa0811120:intron 30.0%
!!! TTAATTAAGGGGTGTTTTTC+TGG - chr5_3:40284436-40284455 Msa0811120:intron 30.0%
!!! TCAGTATTTTGACTTCTATG+AGG - chr5_3:40284618-40284637 Msa0811120:intron 30.0%
! ATATCGTTTTCTCTCATTGT+AGG - chr5_3:40285019-40285038 Msa0811120:intron 30.0%
!! GAAAGTATTTGCCTTAAATC+TGG + chr5_3:40285259-40285278 None:intergenic 30.0%
! ATCCTCTTACTTTAAAGGAT+GGG + chr5_3:40285503-40285522 None:intergenic 30.0%
! TATCCTCTTACTTTAAAGGA+TGG + chr5_3:40285504-40285523 None:intergenic 30.0%
!! GTTTTATTACCATAGAGATC+CGG - chr5_3:40285544-40285563 Msa0811120:three_prime_UTR 30.0%
AATAATTGACCGACATAAAC+CGG + chr5_3:40285566-40285585 None:intergenic 30.0%
! TGGTAAGTATGTACTCTTTT+TGG - chr5_3:40285601-40285620 Msa0811120:three_prime_UTR 30.0%
! ATGAGAGGGTGTATATAAAT+TGG + chr5_3:40285642-40285661 None:intergenic 30.0%
TTATCAAACAAGCTCTTTCT+TGG + chr5_3:40285700-40285719 None:intergenic 30.0%
! AAAATGTGGAGATCATCTTT+TGG - chr5_3:40285882-40285901 Msa0811120:three_prime_UTR 30.0%
GAAAATGTGCAAGATAATGA+GGG - chr5_3:40285973-40285992 Msa0811120:three_prime_UTR 30.0%
!!! AATTTTATTTTCAGCCTGAG+TGG - chr5_3:40286238-40286257 Msa0811120:intron 30.0%
! GTTTTCAATATGTTCACACA+TGG - chr5_3:40286629-40286648 Msa0811120:intron 30.0%
ATTTGTCCAAATTCTATGGT+TGG - chr5_3:40286654-40286673 Msa0811120:intron 30.0%
GATAGCCTTTCTAATAAACT+AGG - chr5_3:40286676-40286695 Msa0811120:intron 30.0%
! TGTTTGATTGGGCTTAATTT+TGG - chr5_3:40286738-40286757 Msa0811120:intron 30.0%
CTATTAGTATGTTGATCAGA+TGG - chr5_3:40286781-40286800 Msa0811120:intron 30.0%
TTTCTGTCGCTAAAATATGT+TGG - chr5_3:40287243-40287262 Msa0811120:CDS 30.0%
! TACTAGTTTATGACCAACAA+GGG + chr5_3:40287304-40287323 None:intergenic 30.0%
! ATACTAGTTTATGACCAACA+AGG + chr5_3:40287305-40287324 None:intergenic 30.0%
! TGGTCATAAACTAGTATTGA+TGG - chr5_3:40287308-40287327 Msa0811120:CDS 30.0%
!! TAGTATTGATGGAACCTTAA+TGG - chr5_3:40287319-40287338 Msa0811120:intron 30.0%
TCATGCTAACACATTTCATA+AGG - chr5_3:40287368-40287387 Msa0811120:intron 30.0%
CATGCTAACACATTTCATAA+GGG - chr5_3:40287369-40287388 Msa0811120:intron 30.0%
AAAAAGTAAGTTGCTCTGTG+AGG + chr5_3:40280126-40280145 None:intergenic 35.0%
!!! GAGCAACTTACTTTTTTCCT+AGG - chr5_3:40280130-40280149 Msa0811120:three_prime_UTR 35.0%
! GTAGTAGAGTTTGAGCTTTT+CGG + chr5_3:40280270-40280289 None:intergenic 35.0%
ATCAAAAAACTCCGCTGTTT+CGG - chr5_3:40280302-40280321 Msa0811120:three_prime_UTR 35.0%
! AAATTGCAGCGTTTTGTGAT+TGG - chr5_3:40280367-40280386 Msa0811120:three_prime_UTR 35.0%
CTTTCTTTCTTATCAACCCT+TGG - chr5_3:40280861-40280880 Msa0811120:intron 35.0%
TTTCTTATCAACCCTTGGTT+CGG - chr5_3:40280866-40280885 Msa0811120:intron 35.0%
AATCAGTTTCTCGTCGTTTA+TGG - chr5_3:40281034-40281053 Msa0811120:intron 35.0%
ATCAGTTTCTCGTCGTTTAT+GGG - chr5_3:40281035-40281054 Msa0811120:intron 35.0%
! TAAGTGCATGTTTGGTAACA+CGG + chr5_3:40281170-40281189 None:intergenic 35.0%
ATTCGATCTAAGTGCATGTT+TGG + chr5_3:40281178-40281197 None:intergenic 35.0%
!! TGGATTTGTTAGAATTAGGG+TGG - chr5_3:40281300-40281319 Msa0811120:intron 35.0%
! TGGATCACCTTATTGATTGT+AGG - chr5_3:40281320-40281339 Msa0811120:intron 35.0%
TGCATGTGTGATATCATTGT+GGG + chr5_3:40281395-40281414 None:intergenic 35.0%
TTGCATGTGTGATATCATTG+TGG + chr5_3:40281396-40281415 None:intergenic 35.0%
GAGATTGAGATCGATAATGA+TGG - chr5_3:40281508-40281527 Msa0811120:three_prime_UTR 35.0%
! GAGATCGATAATGATGGTTT+TGG - chr5_3:40281514-40281533 Msa0811120:three_prime_UTR 35.0%
! TGATTTTTGTATCAGGTGAC+AGG - chr5_3:40281542-40281561 Msa0811120:intron 35.0%
GAATTTCCTTCCTACATTGA+TGG - chr5_3:40281664-40281683 Msa0811120:intron 35.0%
ACTTCCAAAGAACTCTCATT+GGG + chr5_3:40281707-40281726 None:intergenic 35.0%
GATCACAATTGTCTAGATCA+GGG + chr5_3:40281936-40281955 None:intergenic 35.0%
AGATCACAATTGTCTAGATC+AGG + chr5_3:40281937-40281956 None:intergenic 35.0%
AGACAATTGTGATCTAGATC+GGG - chr5_3:40281942-40281961 Msa0811120:intron 35.0%
!! TTGGTGTTGGATGTATGAAA+AGG - chr5_3:40282055-40282074 Msa0811120:intron 35.0%
! TGGTGTTGGATGTATGAAAA+GGG - chr5_3:40282056-40282075 Msa0811120:intron 35.0%
!! TGTTTTGTTGATGCAGAGAT+TGG - chr5_3:40282389-40282408 Msa0811120:intron 35.0%
TTGTGAAGATCAAAGATGAC+AGG - chr5_3:40282487-40282506 Msa0811120:intron 35.0%
AGTATGTTGTTGACCTTGTT+GGG - chr5_3:40282778-40282797 Msa0811120:three_prime_UTR 35.0%
CACATATGCTCCATTAATTG+AGG + chr5_3:40282832-40282851 None:intergenic 35.0%
TCAACTGTATTCAGGTATGT+TGG - chr5_3:40282965-40282984 Msa0811120:three_prime_UTR 35.0%
CAACTGTATTCAGGTATGTT+GGG - chr5_3:40282966-40282985 Msa0811120:three_prime_UTR 35.0%
TTCATACTGAAGAAACCACT+TGG + chr5_3:40283138-40283157 None:intergenic 35.0%
GCAATGGAAAATGAAACATG+AGG + chr5_3:40283254-40283273 None:intergenic 35.0%
!!! ATATGAAACTTTTGGGGCAA+TGG + chr5_3:40283270-40283289 None:intergenic 35.0%
ATTGCCCCAAAAGTTTCATA+TGG - chr5_3:40283269-40283288 Msa0811120:intron 35.0%
GTACTGTATGATCTAAGGAT+AGG + chr5_3:40283327-40283346 None:intergenic 35.0%
! GTTGCTACTCAATCTTTTAC+AGG - chr5_3:40283399-40283418 Msa0811120:three_prime_UTR 35.0%
TTCAAGCCAAAAGGAATTAC+AGG + chr5_3:40283528-40283547 None:intergenic 35.0%
!!! GTAATTCCTTTTGGCTTGAA+AGG - chr5_3:40283528-40283547 Msa0811120:intron 35.0%
GTCATGTAATAATGCTTCAG+AGG + chr5_3:40283629-40283648 None:intergenic 35.0%
! AGAAAATCGACTTCATAACC+AGG - chr5_3:40283759-40283778 Msa0811120:intron 35.0%
! GAAAATCGACTTCATAACCA+GGG - chr5_3:40283760-40283779 Msa0811120:intron 35.0%
GATTAAACAAATGTTACGCG+AGG - chr5_3:40284378-40284397 Msa0811120:intron 35.0%
TCTGTCACTATAGATAGATG+AGG + chr5_3:40284746-40284765 None:intergenic 35.0%
! CCAAAAAAGGTTGATTACCT+GGG + chr5_3:40284776-40284795 None:intergenic 35.0%
! ACCAAAAAAGGTTGATTACC+TGG + chr5_3:40284777-40284796 None:intergenic 35.0%
TTTCTCTCATTGTAGGCTAA+AGG - chr5_3:40285026-40285045 Msa0811120:intron 35.0%
TTCTCTCATTGTAGGCTAAA+GGG - chr5_3:40285027-40285046 Msa0811120:intron 35.0%
CTTATATATGGTAACTCGAC+AGG + chr5_3:40285461-40285480 None:intergenic 35.0%
! GACGAAGGTTTGCTTATATA+TGG + chr5_3:40285473-40285492 None:intergenic 35.0%
! TCCTCTTACTTTAAAGGATG+GGG + chr5_3:40285502-40285521 None:intergenic 35.0%
TCAATTATTTGATGCTGCCT+TGG - chr5_3:40285577-40285596 Msa0811120:three_prime_UTR 35.0%
CAATTATTTGATGCTGCCTT+GGG - chr5_3:40285578-40285597 Msa0811120:three_prime_UTR 35.0%
ATCCTTAATGCTTGCATTTC+TGG - chr5_3:40285660-40285679 Msa0811120:intron 35.0%
ATCCAGAAATGCAAGCATTA+AGG + chr5_3:40285665-40285684 None:intergenic 35.0%
! ACAAGCTCTTTCTTGGTAAT+TGG + chr5_3:40285693-40285712 None:intergenic 35.0%
AGGAGAGATTAAAATGGTAG+TGG + chr5_3:40285760-40285779 None:intergenic 35.0%
! CTTGCACATTTTCCATATAG+TGG + chr5_3:40285966-40285985 None:intergenic 35.0%
GGAAAATGTGCAAGATAATG+AGG - chr5_3:40285972-40285991 Msa0811120:three_prime_UTR 35.0%
TGCAAGATAATGAGGGATAA+GGG - chr5_3:40285980-40285999 Msa0811120:three_prime_UTR 35.0%
!!! ATAGTTTTGGTGTCATCTTG+TGG - chr5_3:40286313-40286332 Msa0811120:intron 35.0%
!!! TAGTTTTGGTGTCATCTTGT+GGG - chr5_3:40286314-40286333 Msa0811120:intron 35.0%
ATTACTCAACGAGTTTACCT+GGG + chr5_3:40286382-40286401 None:intergenic 35.0%
AATTACTCAACGAGTTTACC+TGG + chr5_3:40286383-40286402 None:intergenic 35.0%
! TGCAATGTTTGAAACATGCA+AGG + chr5_3:40286418-40286437 None:intergenic 35.0%
TAATCTTCATGTGTATCCTC+AGG - chr5_3:40286482-40286501 Msa0811120:intron 35.0%
GGTCATTTGTCCAAATTCTA+TGG - chr5_3:40286650-40286669 Msa0811120:intron 35.0%
!! TGATCAGATGGATTCCATTT+TGG - chr5_3:40286793-40286812 Msa0811120:intron 35.0%
!! GATCAGATGGATTCCATTTT+GGG - chr5_3:40286794-40286813 Msa0811120:intron 35.0%
TACCAACTTCAGATTCTCTA+AGG - chr5_3:40286908-40286927 Msa0811120:CDS 35.0%
! TTCCTTAGAGAATCTGAAGT+TGG + chr5_3:40286913-40286932 None:intergenic 35.0%
!!! AGGAAGACCTTTTTTGCTTT+AGG - chr5_3:40286928-40286947 Msa0811120:CDS 35.0%
TGACTTTAGCAGCTTCTTTA+TGG + chr5_3:40287128-40287147 None:intergenic 35.0%
GGGATTGTTGTAATTGTAAG+TGG - chr5_3:40287454-40287473 Msa0811120:CDS 35.0%
CTACAAGATAAAAGAGCTTG+AGG + chr5_3:40287488-40287507 None:intergenic 35.0%
!! CTTTTCTCTGGAAATTGCCT+AGG + chr5_3:40280150-40280169 None:intergenic 40.0%
CTAGGCAATTTCCAGAGAAA+AGG - chr5_3:40280148-40280167 Msa0811120:three_prime_UTR 40.0%
! GATTCATCGAACCTTTTCTC+TGG + chr5_3:40280162-40280181 None:intergenic 40.0%
GAATATGATCTGATCGGTGA+CGG + chr5_3:40280470-40280489 None:intergenic 40.0%
TATTCTACATGAAGAGGACG+AGG - chr5_3:40280485-40280504 Msa0811120:three_prime_UTR 40.0%
CGATGAGAAGAACTATGCTA+AGG - chr5_3:40280794-40280813 Msa0811120:intron 40.0%
CTATGAACTACAACAAGCCT+TGG - chr5_3:40280830-40280849 Msa0811120:intron 40.0%
CCAGTATCAAAAGTGAGAAC+CGG + chr5_3:40280994-40281013 None:intergenic 40.0%
CCATAATCATACTGCGCTAA+TGG + chr5_3:40281368-40281387 None:intergenic 40.0%
CCATTAGCGCAGTATGATTA+TGG - chr5_3:40281365-40281384 Msa0811120:three_prime_UTR 40.0%
TACACTGACAAGATTGCAGA+TGG - chr5_3:40281575-40281594 Msa0811120:intron 40.0%
!! TACATTGATGGCGCTTAAAG+CGG - chr5_3:40281676-40281695 Msa0811120:intron 40.0%
TGAACCCAATGAGAGTTCTT+TGG - chr5_3:40281700-40281719 Msa0811120:intron 40.0%
CACTTCCAAAGAACTCTCAT+TGG + chr5_3:40281708-40281727 None:intergenic 40.0%
GATTCTTATTGATAGACGCG+AGG - chr5_3:40281727-40281746 Msa0811120:intron 40.0%
! AAGCTTTTCAACAAGCACCA+AGG + chr5_3:40281813-40281832 None:intergenic 40.0%
! TTGGTGCTTGTTGAAAAGCT+TGG - chr5_3:40281812-40281831 Msa0811120:intron 40.0%
GACAATTGTGATCTAGATCG+GGG - chr5_3:40281943-40281962 Msa0811120:intron 40.0%
ACAATTGTGATCTAGATCGG+GGG - chr5_3:40281944-40281963 Msa0811120:intron 40.0%
! GGTGTTGGATGTATGAAAAG+GGG - chr5_3:40282057-40282076 Msa0811120:intron 40.0%
TCTGCAAAAAAGGTGGAAGA+TGG - chr5_3:40282104-40282123 Msa0811120:intron 40.0%
ACACCCTCCTCTTATATGAT+AGG + chr5_3:40282316-40282335 None:intergenic 40.0%
TATCATATAAGAGGAGGGTG+TGG - chr5_3:40282315-40282334 Msa0811120:intron 40.0%
TTTGTTGATGCAGAGATTGG+CGG - chr5_3:40282392-40282411 Msa0811120:intron 40.0%
!! CAGAGATTGGCGGATTATAT+AGG - chr5_3:40282402-40282421 Msa0811120:intron 40.0%
AACTGTCAAGGTTAGTGCAA+CGG - chr5_3:40282511-40282530 Msa0811120:intron 40.0%
!! TGGCTTTGATCATCTTCAAC+CGG - chr5_3:40282591-40282610 Msa0811120:intron 40.0%
AACAACATACTCCCTGACAA+AGG + chr5_3:40282769-40282788 None:intergenic 40.0%
GAGTATGTTGTTGACCTTGT+TGG - chr5_3:40282777-40282796 Msa0811120:three_prime_UTR 40.0%
GTATGTTGTTGACCTTGTTG+GGG - chr5_3:40282779-40282798 Msa0811120:three_prime_UTR 40.0%
GGGAACCAGGAAATATTACT+GGG - chr5_3:40282799-40282818 Msa0811120:three_prime_UTR 40.0%
GCTCCATTAATTGAGGAATC+TGG + chr5_3:40282825-40282844 None:intergenic 40.0%
AAAATCTCAATTGCCCTACG+TGG - chr5_3:40282890-40282909 Msa0811120:intron 40.0%
CAGTTGGAAGTTAAATGGTC+AGG + chr5_3:40283001-40283020 None:intergenic 40.0%
AGTTTCATATGGAGTATGGC+TGG - chr5_3:40283280-40283299 Msa0811120:intron 40.0%
CGACAGTACTGTATGATCTA+AGG + chr5_3:40283332-40283351 None:intergenic 40.0%
!!! GACCAGTCAGATTTTGAAGT+TGG - chr5_3:40283371-40283390 Msa0811120:intron 40.0%
GACCAACTTCAAAATCTGAC+TGG + chr5_3:40283376-40283395 None:intergenic 40.0%
!! GCTTCAGTTGATAAAACTCC+TGG - chr5_3:40283489-40283508 Msa0811120:intron 40.0%
!! TCAGTTGATAAAACTCCTGG+AGG - chr5_3:40283492-40283511 Msa0811120:intron 40.0%
! GAACCACCTGTAATTCCTTT+TGG - chr5_3:40283519-40283538 Msa0811120:intron 40.0%
AAGCCAAAAGGAATTACAGG+TGG + chr5_3:40283525-40283544 None:intergenic 40.0%
GTAATAATGCTTCAGAGGCT+GGG + chr5_3:40283624-40283643 None:intergenic 40.0%
TGTAATAATGCTTCAGAGGC+TGG + chr5_3:40283625-40283644 None:intergenic 40.0%
AAGGGAAGTTCAGTGGTAAA+TGG - chr5_3:40283712-40283731 Msa0811120:intron 40.0%
AAATGGTATCCAGTCAAAGC+AGG - chr5_3:40283729-40283748 Msa0811120:three_prime_UTR 40.0%
TCTTGAACCATCACTAGCAA+TGG - chr5_3:40283810-40283829 Msa0811120:intron 40.0%
!! CTCATGCTTTGCAGTTTTGA+AGG - chr5_3:40283902-40283921 Msa0811120:three_prime_UTR 40.0%
! AAGGAGCATAAATGACGTGA+TGG - chr5_3:40283921-40283940 Msa0811120:three_prime_UTR 40.0%
ACTCTTTCAACTGATCGTCA+TGG + chr5_3:40284329-40284348 None:intergenic 40.0%
GTTGAAAGAGTTCTTACGAG+AGG - chr5_3:40284338-40284357 Msa0811120:intron 40.0%
ATTAGGGTGATGAGTTGCTT+TGG - chr5_3:40284490-40284509 Msa0811120:intron 40.0%
!!! CCCAGGTAATCAACCTTTTT+TGG - chr5_3:40284773-40284792 Msa0811120:three_prime_UTR 40.0%
!! AGTGTCTCACTGTTGTTTCT+TGG - chr5_3:40284840-40284859 Msa0811120:three_prime_UTR 40.0%
GTTTATTTCGCCTGATTCAC+AGG - chr5_3:40284882-40284901 Msa0811120:three_prime_UTR 40.0%
TCCAAGGAGAAGATTACGAA+TGG - chr5_3:40284928-40284947 Msa0811120:three_prime_UTR 40.0%
TAAGGAGTAACTCAGTTGCT+TGG + chr5_3:40285158-40285177 None:intergenic 40.0%
TATGCTCAGGTGTGTGATTT+CGG - chr5_3:40285228-40285247 Msa0811120:three_prime_UTR 40.0%
TTGTCCTCAAAATCTGTTGC+TGG - chr5_3:40285279-40285298 Msa0811120:three_prime_UTR 40.0%
CTCAAAATCTGTTGCTGGAA+CGG - chr5_3:40285284-40285303 Msa0811120:three_prime_UTR 40.0%
!! ACCCCATCCTTTAAAGTAAG+AGG - chr5_3:40285498-40285517 Msa0811120:intron 40.0%
CATAGAGATCCGGTTTATGT+CGG - chr5_3:40285554-40285573 Msa0811120:three_prime_UTR 40.0%
!! ACTCTTTTTGGTGTGCTTCA+TGG - chr5_3:40285613-40285632 Msa0811120:three_prime_UTR 40.0%
TGCAAGCATTAAGGATGAGA+GGG + chr5_3:40285656-40285675 None:intergenic 40.0%
ATGCAAGCATTAAGGATGAG+AGG + chr5_3:40285657-40285676 None:intergenic 40.0%
!! GATCATCTTTTGGAGAGTAG+AGG - chr5_3:40285892-40285911 Msa0811120:three_prime_UTR 40.0%
GTGCAAGATAATGAGGGATA+AGG - chr5_3:40285979-40285998 Msa0811120:three_prime_UTR 40.0%
TTATAATACCCGGACTTGAG+AGG - chr5_3:40286095-40286114 Msa0811120:three_prime_UTR 40.0%
! CAGGTTGAACTTTCACTTCA+CGG - chr5_3:40286183-40286202 Msa0811120:intron 40.0%
! TTATTTTCAGCCTGAGTGGA+TGG - chr5_3:40286242-40286261 Msa0811120:intron 40.0%
ACATCAGACTTCTCGTTTGT+AGG + chr5_3:40286291-40286310 None:intergenic 40.0%
TAGTGACCTTACAACAACCA+TGG - chr5_3:40286340-40286359 Msa0811120:intron 40.0%
ACCTTACAACAACCATGGAA+TGG - chr5_3:40286345-40286364 Msa0811120:intron 40.0%
TCCATTCCATGGTTGTTGTA+AGG + chr5_3:40286349-40286368 None:intergenic 40.0%
CTCCCTTATGGAATCTTGTT+GGG - chr5_3:40286572-40286591 Msa0811120:intron 40.0%
AGCCCAACAAGATTCCATAA+GGG + chr5_3:40286577-40286596 None:intergenic 40.0%
GGCTATCCAACCATAGAATT+TGG + chr5_3:40286663-40286682 None:intergenic 40.0%
CAACTATGCTGGCAAAAGAT+GGG + chr5_3:40287102-40287121 None:intergenic 40.0%
TCAACTATGCTGGCAAAAGA+TGG + chr5_3:40287103-40287122 None:intergenic 40.0%
CTTTATGGTCTCAACTATGC+TGG + chr5_3:40287113-40287132 None:intergenic 40.0%
ATTGGGTGGAATGAACCATA+AGG - chr5_3:40287198-40287217 Msa0811120:CDS 40.0%
CCAGTTGCAAACAACCATTA+AGG + chr5_3:40287336-40287355 None:intergenic 40.0%
CCTTAATGGTTGTTTGCAAC+TGG - chr5_3:40287333-40287352 Msa0811120:intron 40.0%
GGTGAAAAGTTCCGAAACAG+CGG + chr5_3:40280316-40280335 None:intergenic 45.0%
! GTTTCGGAACTTTTCACCGA+CGG - chr5_3:40280318-40280337 Msa0811120:three_prime_UTR 45.0%
! TGCAGCGTTTTGTGATTGGT+TGG - chr5_3:40280371-40280390 Msa0811120:three_prime_UTR 45.0%
ACATCAACAGCATCCTTCTC+CGG + chr5_3:40280555-40280574 None:intergenic 45.0%
TCACTATCGAGATTGTCGAG+TGG - chr5_3:40280600-40280619 Msa0811120:three_prime_UTR 45.0%
TACAACAAGCCTTGGCAAAG+AGG - chr5_3:40280838-40280857 Msa0811120:intron 45.0%
GAAAGAAAGCCTCTTTGCCA+AGG + chr5_3:40280850-40280869 None:intergenic 45.0%
!! CCGGTTCTCACTTTTGATAC+TGG - chr5_3:40280991-40281010 Msa0811120:intron 45.0%
! TGCATGTTTGGTAACACGGT+GGG + chr5_3:40281166-40281185 None:intergenic 45.0%
TGGGAATGAATCCGTACTTG+TGG - chr5_3:40281612-40281631 Msa0811120:intron 45.0%
GGGAATGAATCCGTACTTGT+GGG - chr5_3:40281613-40281632 Msa0811120:intron 45.0%
TTGCACATCACCCACAAGTA+CGG + chr5_3:40281626-40281645 None:intergenic 45.0%
TGCAATGACATGGAGGAAGA+AGG - chr5_3:40281641-40281660 Msa0811120:intron 45.0%
GCAATGACATGGAGGAAGAA+GGG - chr5_3:40281642-40281661 Msa0811120:intron 45.0%
TAAGCGCCATCAATGTAGGA+AGG + chr5_3:40281673-40281692 None:intergenic 45.0%
! GCTTTAAGCGCCATCAATGT+AGG + chr5_3:40281677-40281696 None:intergenic 45.0%
! TTCTGCTTCTGAGAATGCCT+TGG - chr5_3:40281793-40281812 Msa0811120:intron 45.0%
AGCAAGGGGATCTGCAAAAA+AGG - chr5_3:40282094-40282113 Msa0811120:intron 45.0%
AAGGGGATCTGCAAAAAAGG+TGG - chr5_3:40282097-40282116 Msa0811120:intron 45.0%
GGTGGAAGATGGTTAGTAAG+CGG - chr5_3:40282115-40282134 Msa0811120:intron 45.0%
AGATGGTTAGTAAGCGGTTG+AGG - chr5_3:40282121-40282140 Msa0811120:intron 45.0%
!! TCCAGTTGGTAGTTTGTCCA+CGG - chr5_3:40282167-40282186 Msa0811120:intron 45.0%
AAGATGACAGGCAACTGTCA+AGG - chr5_3:40282499-40282518 Msa0811120:intron 45.0%
GGTTGAAGATGATCAAAGCC+AGG + chr5_3:40282592-40282611 None:intergenic 45.0%
TATTTCCTGGTTCCCCAACA+AGG + chr5_3:40282794-40282813 None:intergenic 45.0%
GGGGAACCAGGAAATATTAC+TGG - chr5_3:40282798-40282817 Msa0811120:three_prime_UTR 45.0%
TCTGGCCCAGTAATATTTCC+TGG + chr5_3:40282807-40282826 None:intergenic 45.0%
GGGCCAGATTCCTCAATTAA+TGG - chr5_3:40282819-40282838 Msa0811120:three_prime_UTR 45.0%
! CATATGGAGTATGGCTGGTT+AGG - chr5_3:40283285-40283304 Msa0811120:intron 45.0%
CATTGCAAAGGGAAGTTCAG+TGG - chr5_3:40283705-40283724 Msa0811120:intron 45.0%
CTACTTGTTCCTGCTTTGAC+TGG + chr5_3:40283741-40283760 None:intergenic 45.0%
AACCATCACTAGCAATGGAC+TGG - chr5_3:40283815-40283834 Msa0811120:intron 45.0%
!! TGGACTGGCTTGAGATATCA+TGG - chr5_3:40283830-40283849 Msa0811120:intron 45.0%
!! GGACTGGCTTGAGATATCAT+GGG - chr5_3:40283831-40283850 Msa0811120:intron 45.0%
AGATATCATGGGATGAGCTG+CGG - chr5_3:40283842-40283861 Msa0811120:intron 45.0%
! ATCAAAGAACGCATTGGTGC+TGG - chr5_3:40283865-40283884 Msa0811120:three_prime_UTR 45.0%
!! TGAAGAGCACCACATTTGGA+TGG + chr5_3:40284703-40284722 None:intergenic 45.0%
TCCAAATGTGGTGCTCTTCA+TGG - chr5_3:40284703-40284722 Msa0811120:intron 45.0%
CCAAATGTGGTGCTCTTCAT+GGG - chr5_3:40284704-40284723 Msa0811120:intron 45.0%
! TAGTGACAGAGTATTTGCCC+AGG - chr5_3:40284756-40284775 Msa0811120:intron 45.0%
GCCATTCGTAATCTTCTCCT+TGG + chr5_3:40284932-40284951 None:intergenic 45.0%
!! ATTACGAATGGCTCTAGACG+TGG - chr5_3:40284940-40284959 Msa0811120:three_prime_UTR 45.0%
TTGAGATCCCAGTGCACTAT+TGG + chr5_3:40285080-40285099 None:intergenic 45.0%
ATGCTCAGGTGTGTGATTTC+GGG - chr5_3:40285229-40285248 Msa0811120:three_prime_UTR 45.0%
TTTCGGGCTGTCCAGATTTA+AGG - chr5_3:40285245-40285264 Msa0811120:three_prime_UTR 45.0%
! CGTTCCAGCAACAGATTTTG+AGG + chr5_3:40285286-40285305 None:intergenic 45.0%
AGGATGGGGTTTAATGACGA+AGG + chr5_3:40285488-40285507 None:intergenic 45.0%
CGACATAAACCGGATCTCTA+TGG + chr5_3:40285556-40285575 None:intergenic 45.0%
TTATTTGATGCTGCCTTGGG+TGG - chr5_3:40285581-40285600 Msa0811120:three_prime_UTR 45.0%
GAGTACATACTTACCACCCA+AGG + chr5_3:40285597-40285616 None:intergenic 45.0%
ATAGAGAACCTCTCAAGTCC+GGG + chr5_3:40286106-40286125 None:intergenic 45.0%
CATAGAGAACCTCTCAAGTC+CGG + chr5_3:40286107-40286126 None:intergenic 45.0%
TCTTCATGTGTATCCTCAGG+TGG - chr5_3:40286485-40286504 Msa0811120:intron 45.0%
GAGCTGTCGCATTTCAGAAT+AGG - chr5_3:40286511-40286530 Msa0811120:intron 45.0%
GAGACATTTGGAGGGATAGA+AGG + chr5_3:40286540-40286559 None:intergenic 45.0%
ATACTGGGGAGACATTTGGA+GGG + chr5_3:40286548-40286567 None:intergenic 45.0%
AATACTGGGGAGACATTTGG+AGG + chr5_3:40286549-40286568 None:intergenic 45.0%
TCCAAATGTCTCCCCAGTAT+TGG - chr5_3:40286548-40286567 Msa0811120:intron 45.0%
CCAACAAGATTCCATAAGGG+AGG + chr5_3:40286574-40286593 None:intergenic 45.0%
CCTCCCTTATGGAATCTTGT+TGG - chr5_3:40286571-40286590 Msa0811120:intron 45.0%
CAGCCCAACAAGATTCCATA+AGG + chr5_3:40286578-40286597 None:intergenic 45.0%
ACCAGCGGATGCGATAAAAA+TGG - chr5_3:40287147-40287166 Msa0811120:CDS 45.0%
CCAGCGGATGCGATAAAAAT+GGG - chr5_3:40287148-40287167 Msa0811120:CDS 45.0%
TGGTTCATTCCACCCAATCA+CGG + chr5_3:40287196-40287215 None:intergenic 45.0%
ACAAGTAACCTGACCCTTGT+TGG - chr5_3:40287288-40287307 Msa0811120:CDS 45.0%
GTTTATGACCAACAAGGGTC+AGG + chr5_3:40287299-40287318 None:intergenic 45.0%
!! TATGTCTCGTGACTTGCTTC+TGG - chr5_3:40287536-40287555 Msa0811120:CDS 45.0%
!!! GTGACTTGCTTCTGGCTTTT+AGG - chr5_3:40287544-40287563 Msa0811120:CDS 45.0%
!! GAAAAAAAAAAAAAAAAAAA+AGG - chr5_3:40287422-40287441 Msa0811120:CDS 5.0%
!! GGTGTTGATGAGGACGATGA+CGG + chr5_3:40280428-40280447 None:intergenic 50.0%
GTCATCGTCCTCATCAACAC+CGG - chr5_3:40280427-40280446 Msa0811120:three_prime_UTR 50.0%
! GGTGATGATGATGCTGATGC+CGG + chr5_3:40280449-40280468 None:intergenic 50.0%
TCTACATGAAGAGGACGAGG+AGG - chr5_3:40280488-40280507 Msa0811120:three_prime_UTR 50.0%
! CGCGACGAGTTTGTTTGCTT+CGG - chr5_3:40280632-40280651 Msa0811120:three_prime_UTR 50.0%
! GTGCATGTTTGGTAACACGG+TGG + chr5_3:40281167-40281186 None:intergenic 50.0%
GTGGGTGATGTGCAATGACA+TGG - chr5_3:40281631-40281650 Msa0811120:intron 50.0%
GGTGATGTGCAATGACATGG+AGG - chr5_3:40281634-40281653 Msa0811120:intron 50.0%
CAGTGTGTTGTGCTTCCAGT+TGG - chr5_3:40282153-40282172 Msa0811120:intron 50.0%
!! CCAGTTGGTAGTTTGTCCAC+GGG - chr5_3:40282168-40282187 Msa0811120:intron 50.0%
GCATCGCGCAATTCTCTTCA+AGG - chr5_3:40282200-40282219 Msa0811120:intron 50.0%
! AGGTTGCAGGTACTGTGCTT+CGG - chr5_3:40282446-40282465 Msa0811120:three_prime_UTR 50.0%
GATGCTGCATCATCCACGTA+GGG + chr5_3:40282906-40282925 None:intergenic 50.0%
AGATGCTGCATCATCCACGT+AGG + chr5_3:40282907-40282926 None:intergenic 50.0%
TCGCTGCCTTTCAAGCCAAA+AGG + chr5_3:40283537-40283556 None:intergenic 50.0%
! GACTTCATAACCAGGGTGCT+GGG - chr5_3:40283767-40283786 Msa0811120:intron 50.0%
!! ACTTCATAACCAGGGTGCTG+GGG - chr5_3:40283768-40283787 Msa0811120:intron 50.0%
AGCCAGTCCATTGCTAGTGA+TGG + chr5_3:40283820-40283839 None:intergenic 50.0%
CTGCGGATCAAAGAACGCAT+TGG - chr5_3:40283859-40283878 Msa0811120:three_prime_UTR 50.0%
CTGATCCATGCCATTCAGCA+CGG + chr5_3:40283998-40284017 None:intergenic 50.0%
! AGAGCACCACATTTGGATGG+CGG + chr5_3:40284700-40284719 None:intergenic 50.0%
!! CCCATGAAGAGCACCACATT+TGG + chr5_3:40284707-40284726 None:intergenic 50.0%
! TCTTGGTGTGTCTATCGCAG+AGG - chr5_3:40284857-40284876 Msa0811120:three_prime_UTR 50.0%
TCGTGCATTTCACTGGATGC+TGG + chr5_3:40284908-40284927 None:intergenic 50.0%
CCTTGGATCGTGCATTTCAC+TGG + chr5_3:40284915-40284934 None:intergenic 50.0%
CCAGTGAAATGCACGATCCA+AGG - chr5_3:40284912-40284931 Msa0811120:three_prime_UTR 50.0%
TGAAGCCTCCAATAGTGCAC+TGG - chr5_3:40285069-40285088 Msa0811120:intron 50.0%
GAAGCCTCCAATAGTGCACT+GGG - chr5_3:40285070-40285089 Msa0811120:intron 50.0%
AGATCCCAGTGCACTATTGG+AGG + chr5_3:40285077-40285096 None:intergenic 50.0%
ATGGCTCCAGAGTTTCTTCG+TGG - chr5_3:40286261-40286280 Msa0811120:intron 50.0%
GGTTCTCCACGAAGAAACTC+TGG + chr5_3:40286270-40286289 None:intergenic 50.0%
GCATGGCTAAGTCCATTCCA+TGG + chr5_3:40286360-40286379 None:intergenic 50.0%
TCAACGAGTTTACCTGGGCA+TGG + chr5_3:40286377-40286396 None:intergenic 50.0%
CATGTGTATCCTCAGGTGGT+TGG - chr5_3:40286489-40286508 Msa0811120:intron 50.0%
GCCAATACTGGGGAGACATT+TGG + chr5_3:40286552-40286571 None:intergenic 50.0%
CATAAGGGAGGCCAATACTG+GGG + chr5_3:40286562-40286581 None:intergenic 50.0%
CCATAAGGGAGGCCAATACT+GGG + chr5_3:40286563-40286582 None:intergenic 50.0%
TCCATAAGGGAGGCCAATAC+TGG + chr5_3:40286564-40286583 None:intergenic 50.0%
GAAGCTGCTAAAGTCACCAG+CGG - chr5_3:40287132-40287151 Msa0811120:CDS 50.0%
!! CCCATTTTTATCGCATCCGC+TGG + chr5_3:40287151-40287170 None:intergenic 50.0%
GCGGATGCGATAAAAATGGG+CGG - chr5_3:40287151-40287170 Msa0811120:CDS 50.0%
GGTTCATTCCACCCAATCAC+GGG + chr5_3:40287195-40287214 None:intergenic 50.0%
CATGAGCGACATGCTCCTTA+TGG + chr5_3:40287216-40287235 None:intergenic 50.0%
! AGGAGCATGTCGCTCATGAT+CGG - chr5_3:40287218-40287237 Msa0811120:CDS 50.0%
! GTTGATGAGGACGATGACGG+CGG + chr5_3:40280425-40280444 None:intergenic 55.0%
!! TGCTGATGCCGGTGTTGATG+AGG + chr5_3:40280438-40280457 None:intergenic 55.0%
TGAGCATCTGCTGCCGGATT+CGG - chr5_3:40280515-40280534 Msa0811120:three_prime_UTR 55.0%
GAAGACACCTTCGCCGAATC+CGG + chr5_3:40280531-40280550 None:intergenic 55.0%
GAAAAGGGGTTCCTTCCCTG+TGG - chr5_3:40282071-40282090 Msa0811120:intron 55.0%
GTTCCTTCCCTGTGGAGCAA+GGG - chr5_3:40282079-40282098 Msa0811120:intron 55.0%
TTCCTTCCCTGTGGAGCAAG+GGG - chr5_3:40282080-40282099 Msa0811120:intron 55.0%
CCCGTGGACAAACTACCAAC+TGG + chr5_3:40282171-40282190 None:intergenic 55.0%
GTTTGTCCACGGGACTCTGT+AGG - chr5_3:40282178-40282197 Msa0811120:intron 55.0%
! GGAGGGTGTGGATTAACACG+AGG - chr5_3:40282327-40282346 Msa0811120:intron 55.0%
ACCTGCAACCTCGAGCAATG+CGG + chr5_3:40282437-40282456 None:intergenic 55.0%
GGTTAGTGCAACGGCTACTG+TGG - chr5_3:40282520-40282539 Msa0811120:intron 55.0%
GTTGACCTTGTTGGGGAACC+AGG - chr5_3:40282786-40282805 Msa0811120:three_prime_UTR 55.0%
! ACAGGTGGTTCTGTACCTCC+AGG + chr5_3:40283510-40283529 None:intergenic 55.0%
CGACTTCATAACCAGGGTGC+TGG - chr5_3:40283766-40283785 Msa0811120:intron 55.0%
TTGGAATATCCCCAGCACCC+TGG + chr5_3:40283780-40283799 None:intergenic 55.0%
GGACAGTGTACCGTGCTGAA+TGG - chr5_3:40283985-40284004 Msa0811120:three_prime_UTR 55.0%
GTGTACCGTGCTGAATGGCA+TGG - chr5_3:40283990-40284009 Msa0811120:three_prime_UTR 55.0%
GGTTTAGCTGCCATGACGAC+TGG - chr5_3:40284203-40284222 Msa0811120:intron 55.0%
ACGTGTCCGCCATCCAAATG+TGG - chr5_3:40284691-40284710 Msa0811120:intron 55.0%
TGTGGTGCTCTTCATGGGTG+CGG - chr5_3:40284709-40284728 Msa0811120:intron 55.0%
! TGGATGCTGGCCTGTGAATC+AGG + chr5_3:40284895-40284914 None:intergenic 55.0%
!! AACTCTGGAGCCATCCACTC+AGG + chr5_3:40286255-40286274 None:intergenic 55.0%
! GAATGGACTTAGCCATGCCC+AGG - chr5_3:40286362-40286381 Msa0811120:intron 55.0%
!! CCCAGTATTGGCCTCCCTTA+TGG - chr5_3:40286560-40286579 Msa0811120:intron 55.0%
CAAAAGATGGGCGATCGGCA+GGG + chr5_3:40287090-40287109 None:intergenic 55.0%
GCTGGCAAAAGATGGGCGAT+CGG + chr5_3:40287095-40287114 None:intergenic 55.0%
TCATTCCACCCAATCACGGG+AGG + chr5_3:40287192-40287211 None:intergenic 55.0%
GGATCGTGAGCATCTGCTGC+CGG - chr5_3:40280509-40280528 Msa0811120:three_prime_UTR 60.0%
!! TTCGGCGAAGGTGTCTTCGC+CGG - chr5_3:40280533-40280552 Msa0811120:three_prime_UTR 60.0%
!! GAAGGTGTCTTCGCCGGAGA+AGG - chr5_3:40280539-40280558 Msa0811120:three_prime_UTR 60.0%
GGTTCCTTCCCTGTGGAGCA+AGG - chr5_3:40282078-40282097 Msa0811120:intron 60.0%
ATCCCCTTGCTCCACAGGGA+AGG + chr5_3:40282085-40282104 None:intergenic 60.0%
GCAGATCCCCTTGCTCCACA+GGG + chr5_3:40282089-40282108 None:intergenic 60.0%
TGCAGATCCCCTTGCTCCAC+AGG + chr5_3:40282090-40282109 None:intergenic 60.0%
CAACCTCGAGCAATGCGGCA+CGG + chr5_3:40282432-40282451 None:intergenic 60.0%
GCAAAAGATGGGCGATCGGC+AGG + chr5_3:40287091-40287110 None:intergenic 60.0%
ACGAGTACGCCTCCCGTGAT+TGG - chr5_3:40287180-40287199 Msa0811120:CDS 60.0%
CGAGTACGCCTCCCGTGATT+GGG - chr5_3:40287181-40287200 Msa0811120:CDS 60.0%
!! GATGACGGCGGTGATGGTGG+TGG + chr5_3:40280413-40280432 None:intergenic 65.0%
! GACGATGACGGCGGTGATGG+TGG + chr5_3:40280416-40280435 None:intergenic 65.0%
! GAGGACGATGACGGCGGTGA+TGG + chr5_3:40280419-40280438 None:intergenic 65.0%
TCTGCTGCCGGATTCGGCGA+AGG - chr5_3:40280521-40280540 Msa0811120:three_prime_UTR 65.0%
GCGATGCCTACAGAGTCCCG+TGG + chr5_3:40282187-40282206 None:intergenic 65.0%
TTGCCGTGCCGCATTGCTCG+AGG - chr5_3:40282426-40282445 Msa0811120:intron 65.0%
GCCGCATTGCTCGAGGTTGC+AGG - chr5_3:40282433-40282452 Msa0811120:three_prime_UTR 65.0%
GCGACAGCTCCAACCACCTG+AGG + chr5_3:40286501-40286520 None:intergenic 65.0%
GTACGCCTCCCGTGATTGGG+TGG - chr5_3:40287184-40287203 Msa0811120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 40280120 40287616 40280120 ID=Msa0811120;Name=Msa0811120
chr5_3 mRNA 40280120 40287616 40280120 ID=Msa0811120-mRNA-1;Parent=Msa0811120;Name=Msa0811120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.82|0.83|1|0.76|0.77|18|2396|230
chr5_3 exon 40280120 40280652 40280120 ID=Msa0811120-mRNA-1:exon:12322;Parent=Msa0811120-mRNA-1
chr5_3 exon 40281138 40281232 40281138 ID=Msa0811120-mRNA-1:exon:12321;Parent=Msa0811120-mRNA-1
chr5_3 exon 40281353 40281550 40281353 ID=Msa0811120-mRNA-1:exon:12320;Parent=Msa0811120-mRNA-1
chr5_3 exon 40282431 40282499 40282431 ID=Msa0811120-mRNA-1:exon:12319;Parent=Msa0811120-mRNA-1
chr5_3 exon 40282597 40282695 40282597 ID=Msa0811120-mRNA-1:exon:12318;Parent=Msa0811120-mRNA-1
chr5_3 exon 40282775 40282859 40282775 ID=Msa0811120-mRNA-1:exon:12317;Parent=Msa0811120-mRNA-1
chr5_3 exon 40282959 40283059 40282959 ID=Msa0811120-mRNA-1:exon:12316;Parent=Msa0811120-mRNA-1
chr5_3 exon 40283377 40283445 40283377 ID=Msa0811120-mRNA-1:exon:12315;Parent=Msa0811120-mRNA-1
chr5_3 exon 40283720 40283760 40283720 ID=Msa0811120-mRNA-1:exon:12314;Parent=Msa0811120-mRNA-1
chr5_3 exon 40283850 40284122 40283850 ID=Msa0811120-mRNA-1:exon:12313;Parent=Msa0811120-mRNA-1
chr5_3 exon 40284223 40284315 40284223 ID=Msa0811120-mRNA-1:exon:12312;Parent=Msa0811120-mRNA-1
chr5_3 exon 40284758 40284960 40284758 ID=Msa0811120-mRNA-1:exon:12311;Parent=Msa0811120-mRNA-1
chr5_3 exon 40285216 40285331 40285216 ID=Msa0811120-mRNA-1:exon:12310;Parent=Msa0811120-mRNA-1
chr5_3 exon 40285515 40285659 40285515 ID=Msa0811120-mRNA-1:exon:12309;Parent=Msa0811120-mRNA-1
chr5_3 exon 40285878 40286179 40285878 ID=Msa0811120-mRNA-1:exon:12308;Parent=Msa0811120-mRNA-1
chr5_3 exon 40286854 40287053 40286854 ID=Msa0811120-mRNA-1:exon:12307;Parent=Msa0811120-mRNA-1
chr5_3 exon 40287093 40287332 40287093 ID=Msa0811120-mRNA-1:exon:12306;Parent=Msa0811120-mRNA-1
chr5_3 exon 40287390 40287616 40287390 ID=Msa0811120-mRNA-1:exon:12305;Parent=Msa0811120-mRNA-1
chr5_3 CDS 40287390 40287616 40287390 ID=Msa0811120-mRNA-1:cds;Parent=Msa0811120-mRNA-1
chr5_3 CDS 40287093 40287332 40287093 ID=Msa0811120-mRNA-1:cds;Parent=Msa0811120-mRNA-1
chr5_3 CDS 40286854 40287053 40286854 ID=Msa0811120-mRNA-1:cds;Parent=Msa0811120-mRNA-1
chr5_3 CDS 40286154 40286179 40286154 ID=Msa0811120-mRNA-1:cds;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40285878 40286153 40285878 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40285515 40285659 40285515 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40285216 40285331 40285216 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40284758 40284960 40284758 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40284223 40284315 40284223 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40283850 40284122 40283850 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40283720 40283760 40283720 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40283377 40283445 40283377 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40282959 40283059 40282959 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40282775 40282859 40282775 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40282597 40282695 40282597 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40282431 40282499 40282431 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40281353 40281550 40281353 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40281138 40281232 40281138 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
chr5_3 three_prime_UTR 40280120 40280652 40280120 ID=Msa0811120-mRNA-1:three_prime_utr;Parent=Msa0811120-mRNA-1
Gene Sequence

>Msa0811120

ATGCCTCACAGAGCAACTTACTTTTTTCCTAGGCAATTTCCAGAGAAAAGGTTCGATGAATCTTCAAAGAGTAGTACATTAGATCACGAGAAGAAAAAATCAGCAGTCAAATCAACGGATACGACTTTTTGCATTGAAAACGACGTGCCGAAAAGCTCAAACTCTACTACCAAAGACAATCTATCAAAAAACTCCGCTGTTTCGGAACTTTTCACCGACGGTAAAAAACACAGCCACCACCATCACCGCCGTCATCGTCCTCATCAACACCGGCATCAGCATCATCATCACCGTCACCGATCAGATCATATTCTACATGAAGAGGACGAGGAGGATCGTGAGCATCTGCTGCCGGATTCGGCGAAGGTGTCTTCGCCGGAGAAGGATGCTGTTGATGTTGATAGAAGATTTGATAGGGAAGTTTCACTATCGAGATTGTCGAGTGGAAGCAGTTACGCGACGAGTTTTGATGATATTACAAAAGAAGATACGTCGTCGTTTCGAGTTTCTACAAATGAAGTTACAACAAGGAATGAACAAGAAGAAGAAAAGGAACATCATGAAGAAGAAAAACTCAACGATGAGAAGAACTATGCTAAGGAGTGTAAAGAAAGCTATGAACTACAACAAGCCTTGGCAAAGAGGCTTTCTTTCTTATCAACCCTTGGTGACAGGATGTTTGTCGTACACTGA

Protein sequence

>Msa0811120

MPHRATYFFPRQFPEKRFDESSKSSTLDHEKKKSAVKSTDTTFCIENDVPKSSNSTTKDNLSKNSAVSELFTDGKKHSHHHHRRHRPHQHRHQHHHHRHRSDHILHEEDEEDREHLLPDSAKVSSPEKDAVDVDRRFDREVSLSRLSSGSSYATSFDDITKEDTSSFRVSTNEVTTRNEQEEEKEHHEEEKLNDEKNYAKECKESYELQQALAKRLSFLSTLGDRMFVVH*