Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811800 | XP_003615417.2 | 96.025 | 478 | 18 | 1 | 1 | 477 | 1 | 478 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811800 | sp|Q1JPN0|STR7_ARATH | 75.202 | 371 | 87 | 3 | 103 | 471 | 100 | 467 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811800 | G7KD73 | 96.025 | 478 | 18 | 1 | 1 | 477 | 1 | 478 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0811800 | Msa1372760 | 0.812182 | 4.820942e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811800 | MtrunA17_Chr5g0428361 | 96.025 | 478 | 18 | 1 | 1 | 477 | 1 | 478 | 0.0 | 918 |
| Msa0811800 | MtrunA17_Chr1g0192901 | 27.628 | 333 | 174 | 11 | 109 | 425 | 61 | 342 | 2.88e-26 | 112 |
| Msa0811800 | MtrunA17_Chr3g0077981 | 27.114 | 343 | 171 | 16 | 100 | 408 | 92 | 389 | 2.06e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811800 | AT2G40760.1 | 75.202 | 371 | 87 | 3 | 103 | 471 | 100 | 467 | 0.0 | 585 |
| Msa0811800 | AT1G09280.1 | 29.667 | 300 | 149 | 11 | 105 | 387 | 18 | 272 | 2.58e-26 | 112 |
| Msa0811800 | AT1G17850.1 | 25.852 | 352 | 199 | 10 | 103 | 438 | 79 | 384 | 2.30e-22 | 99.8 |
| Msa0811800 | AT1G17850.2 | 26.074 | 349 | 204 | 9 | 103 | 438 | 79 | 386 | 2.33e-22 | 99.8 |
Find 133 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTGCTCAGCGTGTTTC+AGG | 0.198058 | 5_3:+41223454 | Msa0811800:intron |
| GAACTTCCTCAAGATATTTC+AGG | 0.215535 | 5_3:-41225681 | None:intergenic |
| GAGACTCCATATTCATATTC+TGG | 0.238512 | 5_3:-41225841 | None:intergenic |
| AGAAACGGGTATTGCATTAT+TGG | 0.238645 | 5_3:-41221511 | None:intergenic |
| AATAATGCAATACCCGTTTC+TGG | 0.262546 | 5_3:+41221513 | Msa0811800:CDS |
| AGATGGTTTACATCATCTTT+TGG | 0.264124 | 5_3:-41224792 | None:intergenic |
| GCCAGTTCTCCTCTTGCTGC+TGG | 0.275132 | 5_3:+41223652 | Msa0811800:CDS |
| ATCAAAGAATTCCATTCCTT+TGG | 0.293358 | 5_3:-41223896 | None:intergenic |
| GAAAGGGTTGGAAAATATAT+TGG | 0.295361 | 5_3:+41223872 | Msa0811800:CDS |
| CTTGCGCCTGAAGGAATTAA+TGG | 0.297291 | 5_3:+41223487 | Msa0811800:CDS |
| TTTCAGCACTTTGGTCTAGA+TGG | 0.301489 | 5_3:-41224809 | None:intergenic |
| TCCCAAAGGCTTTGTCTCTC+TGG | 0.305574 | 5_3:-41225703 | None:intergenic |
| GTCGGCCGGCGGCCCTTATC+AGG | 0.312889 | 5_3:-41225958 | None:intergenic |
| ATATAGCAACTCACAGTATC+AGG | 0.337635 | 5_3:-41223926 | None:intergenic |
| TTCCAGAGAGACAAAGCCTT+TGG | 0.347459 | 5_3:+41225701 | Msa0811800:CDS |
| GTTTCTGGGTTGGTTGAATC+TGG | 0.348586 | 5_3:+41221528 | Msa0811800:CDS |
| GAAACGGGTATTGCATTATT+GGG | 0.351178 | 5_3:-41221510 | None:intergenic |
| ATTTCAGGATTCCACCTTCC+AGG | 0.354189 | 5_3:-41225666 | None:intergenic |
| CTTGTTCTTGTTTCAGATGA+AGG | 0.374159 | 5_3:-41221381 | None:intergenic |
| GATCATAGGTGGTCCTGATA+AGG | 0.376228 | 5_3:+41225945 | Msa0811800:CDS |
| TCAAAGAATTCCATTCCTTT+GGG | 0.379206 | 5_3:-41223895 | None:intergenic |
| TGATGGATGGCCTCCTCCTC+AGG | 0.383507 | 5_3:-41223610 | None:intergenic |
| TTTCACAGATTGTCACTCTT+GGG | 0.384533 | 5_3:+41223828 | Msa0811800:intron |
| GAATCCCCAGAATATGAATA+TGG | 0.387181 | 5_3:+41225835 | Msa0811800:CDS |
| GTTTCTGCTGGTTCTGAGAA+TGG | 0.391526 | 5_3:-41221271 | None:intergenic |
| CATTTCGTGAATTCCCATCT+TGG | 0.398350 | 5_3:+41224727 | Msa0811800:CDS |
| CCAGTTCTCCTCTTGCTGCT+GGG | 0.402384 | 5_3:+41223653 | Msa0811800:CDS |
| AGGCTGCCATTAATTCCTTC+AGG | 0.403942 | 5_3:-41223493 | None:intergenic |
| ATTTCGTGAATTCCCATCTT+GGG | 0.408789 | 5_3:+41224728 | Msa0811800:CDS |
| TCCAGAGAGACAAAGCCTTT+GGG | 0.410530 | 5_3:+41225702 | Msa0811800:CDS |
| ACAAGAATAGGAAAGTTTAA+AGG | 0.412243 | 5_3:+41224681 | Msa0811800:CDS |
| GGTTGAGGAAGACAAGAATA+TGG | 0.413938 | 5_3:-41221297 | None:intergenic |
| GAAGCAATTATGTCAACAAT+TGG | 0.415412 | 5_3:+41221629 | Msa0811800:CDS |
| ATGGTTTATTGTCATACAAA+TGG | 0.423620 | 5_3:+41226143 | Msa0811800:three_prime_UTR |
| GCCTCCTCCTCAGGACCGAC+AGG | 0.435564 | 5_3:-41223601 | None:intergenic |
| CCCAGCAGCAAGAGGAGAAC+TGG | 0.436013 | 5_3:-41223653 | None:intergenic |
| AGACTCCATATTCATATTCT+GGG | 0.438623 | 5_3:-41225840 | None:intergenic |
| ACACGCAAAACAGCATGATC+AGG | 0.448747 | 5_3:-41221600 | None:intergenic |
| TCTAAGTGTTTCTCTCACTC+TGG | 0.458193 | 5_3:+41221486 | Msa0811800:CDS |
| TTGTTCTTGTTTCAGATGAA+GGG | 0.460653 | 5_3:-41221380 | None:intergenic |
| GCCATCCATCACGGTAATCA+TGG | 0.460795 | 5_3:+41223622 | Msa0811800:CDS |
| CCTATGCGGCACGCGGGAGT+CGG | 0.461325 | 5_3:+41223513 | Msa0811800:CDS |
| ATCATAGGTGGTCCTGATAA+GGG | 0.462911 | 5_3:+41225946 | Msa0811800:CDS |
| GCCTGTCGGTCCTGAGGAGG+AGG | 0.464060 | 5_3:+41223600 | Msa0811800:CDS |
| TTGTTGACATAATTGCTTCA+AGG | 0.465986 | 5_3:-41221625 | None:intergenic |
| ATAATGCAATACCCGTTTCT+GGG | 0.469704 | 5_3:+41221514 | Msa0811800:CDS |
| CAGTTCTCCTCTTGCTGCTG+GGG | 0.472870 | 5_3:+41223654 | Msa0811800:CDS |
| CCGACTCCCGCGTGCCGCAT+AGG | 0.477949 | 5_3:-41223513 | None:intergenic |
| GTAAGAGACAGGAATGGTTG+AGG | 0.481351 | 5_3:-41221312 | None:intergenic |
| AGTCTCTGTCGAGCATGGTT+TGG | 0.481467 | 5_3:+41225753 | Msa0811800:CDS |
| GGAAATTTCAAGCTGTGCTA+TGG | 0.482226 | 5_3:+41225781 | Msa0811800:CDS |
| TGTTCTGTTCACGCGTCGGC+CGG | 0.489843 | 5_3:-41225972 | None:intergenic |
| GATTTCTGTGCAAAACAGTA+AGG | 0.489983 | 5_3:-41225868 | None:intergenic |
| GATTCAACCAACCCAGAAAC+GGG | 0.490628 | 5_3:-41221525 | None:intergenic |
| TGTTGACATAATTGCTTCAA+GGG | 0.490835 | 5_3:-41221624 | None:intergenic |
| GAGTGTTGGAGAATAGAGAA+AGG | 0.491522 | 5_3:-41221440 | None:intergenic |
| TGCAATACCCGTTTCTGGGT+TGG | 0.493913 | 5_3:+41221518 | Msa0811800:CDS |
| AAACGTTCCTCAACCCAAGA+TGG | 0.494304 | 5_3:-41224741 | None:intergenic |
| TAGAGTCAAGTTGAAGAAAG+AGG | 0.495217 | 5_3:+41223705 | Msa0811800:CDS |
| ACAGAAATCGGAAGAAGAAA+AGG | 0.498292 | 5_3:+41225882 | Msa0811800:CDS |
| AATAACTATGAAACAAGAAT+AGG | 0.499632 | 5_3:+41224669 | Msa0811800:CDS |
| TGAATTCCCATCTTGGGTTG+AGG | 0.500420 | 5_3:+41224734 | Msa0811800:CDS |
| AGAATATGGTATGTTTCTGC+TGG | 0.502613 | 5_3:-41221283 | None:intergenic |
| CGTGTTGCAATGTATTGCAC+CGG | 0.505123 | 5_3:+41224864 | Msa0811800:CDS |
| AGATTCAACCAACCCAGAAA+CGG | 0.507922 | 5_3:-41221526 | None:intergenic |
| AATATATTGGCCCAAAGGAA+TGG | 0.509306 | 5_3:+41223885 | Msa0811800:CDS |
| TGCCTCCTCTGAAATGCGTT+AGG | 0.513230 | 5_3:+41226086 | Msa0811800:three_prime_UTR |
| TACGGTATCACCTATTGAAA+GGG | 0.523518 | 5_3:+41223856 | Msa0811800:CDS |
| GTGAACAGAACAGTGCTAGC+AGG | 0.525223 | 5_3:+41225983 | Msa0811800:CDS |
| CATTCCTGTCTCTTACTACA+AGG | 0.527397 | 5_3:+41221319 | Msa0811800:CDS |
| ATGCGGCACGCGGGAGTCGG+TGG | 0.527902 | 5_3:+41223516 | Msa0811800:CDS |
| CAGAGTGATGATCGTCTGAA+GGG | 0.529530 | 5_3:+41223559 | Msa0811800:CDS |
| TCAAGTCTGCTTCTCAGCAA+AGG | 0.533691 | 5_3:+41224909 | Msa0811800:CDS |
| GCATCCTTGTAGTAAGAGAC+AGG | 0.534767 | 5_3:-41221323 | None:intergenic |
| CTACGGTATCACCTATTGAA+AGG | 0.535558 | 5_3:+41223855 | Msa0811800:CDS |
| GTCGAGCATGGTTTGGCACA+AGG | 0.543196 | 5_3:+41225760 | Msa0811800:CDS |
| GGGAAGACGCACCTTTCCGA+TGG | 0.543666 | 5_3:+41223674 | Msa0811800:CDS |
| AACGTTCCTCAACCCAAGAT+GGG | 0.545143 | 5_3:-41224740 | None:intergenic |
| TCACGAAATGATGTCGTACA+AGG | 0.547018 | 5_3:-41224714 | None:intergenic |
| GTATCACCTATTGAAAGGGT+TGG | 0.547522 | 5_3:+41223860 | Msa0811800:CDS |
| TCCTAGGTTTATCACCTGGA+AGG | 0.548476 | 5_3:+41225652 | Msa0811800:intron |
| TCCATGATTACCGTGATGGA+TGG | 0.555016 | 5_3:-41223623 | None:intergenic |
| CTGTGCAAAACAGTAAGGAC+AGG | 0.555519 | 5_3:-41225863 | None:intergenic |
| GCGTCTTCCCCAGCAGCAAG+AGG | 0.564049 | 5_3:-41223661 | None:intergenic |
| GGTATCATTCTTGCGCCTGA+AGG | 0.564695 | 5_3:+41223478 | Msa0811800:CDS |
| GCCTGTGAGTGATGCTGACA+TGG | 0.565387 | 5_3:+41225813 | Msa0811800:CDS |
| TGTTCTTGTTTCAGATGAAG+GGG | 0.568547 | 5_3:-41221379 | None:intergenic |
| TCTGTTCACGCGTCGGCCGG+CGG | 0.571231 | 5_3:-41225969 | None:intergenic |
| GTGTTGCAATGTATTGCACC+GGG | 0.571574 | 5_3:+41224865 | Msa0811800:CDS |
| ATGGCAGCCTATGCGGCACG+CGG | 0.574992 | 5_3:+41223506 | Msa0811800:CDS |
| TCCATGTCAGCATCACTCAC+AGG | 0.575383 | 5_3:-41225814 | None:intergenic |
| TAGGTTTATCACCTGGAAGG+TGG | 0.575724 | 5_3:+41225655 | Msa0811800:intron |
| TGAACAGAACAGTGCTAGCA+GGG | 0.581821 | 5_3:+41225984 | Msa0811800:CDS |
| TCAGAGTGATGATCGTCTGA+AGG | 0.589849 | 5_3:+41223558 | Msa0811800:CDS |
| TGGCAGCCTATGCGGCACGC+GGG | 0.593193 | 5_3:+41223507 | Msa0811800:CDS |
| GCTTTGAAGAGAATGAGTGT+TGG | 0.594168 | 5_3:-41221454 | None:intergenic |
| CACGCAAAACAGCATGATCA+GGG | 0.597142 | 5_3:-41221599 | None:intergenic |
| TGGAAAATATATTGGCCCAA+AGG | 0.599295 | 5_3:+41223880 | Msa0811800:CDS |
| AATTTCCTAGGTTTATCACC+TGG | 0.599744 | 5_3:+41225648 | Msa0811800:intron |
| GTGGTCCTGATAAGGGCCGC+CGG | 0.600523 | 5_3:+41225953 | Msa0811800:CDS |
| AAGAGAGTCTCTGTCGAGCA+TGG | 0.601409 | 5_3:+41225748 | Msa0811800:CDS |
| ATCGCCTGTCGGTCCTGAGG+AGG | 0.603649 | 5_3:+41223597 | Msa0811800:CDS |
| TGGAATCCTGAAATATCTTG+AGG | 0.604033 | 5_3:+41225675 | Msa0811800:CDS |
| AGAGAGACAAAGCCTTTGGG+AGG | 0.605081 | 5_3:+41225705 | Msa0811800:CDS |
| GAGAGACAAAGCCTTTGGGA+GGG | 0.605148 | 5_3:+41225706 | Msa0811800:CDS |
| ATCGGAAGAAGAAAAGGAGA+GGG | 0.608676 | 5_3:+41225888 | Msa0811800:CDS |
| TGTCACTCTTGGGATGCCTA+CGG | 0.608920 | 5_3:+41223838 | Msa0811800:CDS |
| CTCCTAACGCATTTCAGAGG+AGG | 0.609444 | 5_3:-41226088 | None:intergenic |
| GGAATTAATGGCAGCCTATG+CGG | 0.611501 | 5_3:+41223499 | Msa0811800:CDS |
| TGACTCTAACATGATCCCAT+CGG | 0.612610 | 5_3:-41223690 | None:intergenic |
| GACTCCATATTCATATTCTG+GGG | 0.618092 | 5_3:-41225839 | None:intergenic |
| ATGGAGGCTGCATTTAGATG+TGG | 0.618896 | 5_3:-41221252 | None:intergenic |
| AGACGTATTGAATCGCCTGT+CGG | 0.621122 | 5_3:+41223586 | Msa0811800:CDS |
| CAAAGCACTCTCCCTCCCAA+AGG | 0.622495 | 5_3:-41225717 | None:intergenic |
| GGAAGACGCACCTTTCCGAT+GGG | 0.629157 | 5_3:+41223675 | Msa0811800:CDS |
| ATTGCTCAGCGTGTTTCAGG+CGG | 0.630807 | 5_3:+41223457 | Msa0811800:intron |
| TCTGCTGGTTCTGAGAATGG+AGG | 0.632262 | 5_3:-41221268 | None:intergenic |
| TGAATCGCCTGTCGGTCCTG+AGG | 0.633906 | 5_3:+41223594 | Msa0811800:CDS |
| TTTCTCACAACGAATACCCC+CGG | 0.636565 | 5_3:-41224883 | None:intergenic |
| GTGCAATACATTGCAACACG+TGG | 0.637574 | 5_3:-41224861 | None:intergenic |
| TGAAGTAGAGTCTCTTGTCG+TGG | 0.638331 | 5_3:+41221551 | Msa0811800:CDS |
| GAGGAGGAGGCCATCCATCA+CGG | 0.641644 | 5_3:+41223613 | Msa0811800:CDS |
| GCACTCCTAACGCATTTCAG+AGG | 0.646098 | 5_3:-41226091 | None:intergenic |
| CTAACATGATCCCATCGGAA+AGG | 0.650816 | 5_3:-41223685 | None:intergenic |
| TGTGTCCATGATTACCGTGA+TGG | 0.656638 | 5_3:-41223627 | None:intergenic |
| AGAGTGATGATCGTCTGAAG+GGG | 0.657846 | 5_3:+41223560 | Msa0811800:CDS |
| GTTGCAATGTATTGCACCGG+GGG | 0.658590 | 5_3:+41224867 | Msa0811800:CDS |
| AATCGGAAGAAGAAAAGGAG+AGG | 0.663172 | 5_3:+41225887 | Msa0811800:CDS |
| GCACTGTTCTGTTCACGCGT+CGG | 0.664302 | 5_3:-41225976 | None:intergenic |
| TCTCAGCAAAGGTTTCAAAG+AGG | 0.667201 | 5_3:+41224920 | Msa0811800:CDS |
| CTTGTAGTAAGAGACAGGAA+TGG | 0.678677 | 5_3:-41221318 | None:intergenic |
| CTTTCAATAGGTGATACCGT+AGG | 0.713249 | 5_3:-41223854 | None:intergenic |
| TGTTGCAATGTATTGCACCG+GGG | 0.737260 | 5_3:+41224866 | Msa0811800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTTGGATTTTT+TGG | + | chr5_3:41222665-41222684 | Msa0811800:intron | 10.0% |
| !!! | TATAAATGATATATTTTGTA+TGG | + | chr5_3:41226211-41226230 | Msa0811800:three_prime_UTR | 10.0% |
| !!! | AATTTTAAAACTTTTTGATC+TGG | + | chr5_3:41224222-41224241 | Msa0811800:intron | 15.0% |
| !!! | CAAAACAAACTAAATTTTTA+AGG | - | chr5_3:41224954-41224973 | None:intergenic | 15.0% |
| !!! | TAAACATATTTTAACTGATA+TGG | + | chr5_3:41225072-41225091 | Msa0811800:intron | 15.0% |
| !!! | AGAAATTATGATTGTTGTTT+TGG | + | chr5_3:41221682-41221701 | Msa0811800:intron | 20.0% |
| !!! | TTGTACATCATTTTAATTCA+TGG | + | chr5_3:41221713-41221732 | Msa0811800:intron | 20.0% |
| !!! | ACTAGTTTATGTATCAAAAT+AGG | - | chr5_3:41221778-41221797 | None:intergenic | 20.0% |
| !!! | TTGATATTTTAGCATATATG+TGG | + | chr5_3:41222691-41222710 | Msa0811800:intron | 20.0% |
| !! | TAATATATAGCAAAGTAGTT+CGG | - | chr5_3:41223755-41223774 | None:intergenic | 20.0% |
| !! | GATAAAAAAACACCAATAAT+AGG | - | chr5_3:41223953-41223972 | None:intergenic | 20.0% |
| !! | AATAACTATGAAACAAGAAT+AGG | + | chr5_3:41224669-41224688 | Msa0811800:CDS | 20.0% |
| !!! | TATTTTAACTGATATGGAAA+TGG | + | chr5_3:41225078-41225097 | Msa0811800:intron | 20.0% |
| !!! | ATTTTAACTGATATGGAAAT+GGG | + | chr5_3:41225079-41225098 | Msa0811800:intron | 20.0% |
| !! | TAAATAGCACATTAAAAACA+AGG | - | chr5_3:41225491-41225510 | None:intergenic | 20.0% |
| !! | ATTCTATTTGAAAATTTCCT+AGG | + | chr5_3:41225636-41225655 | Msa0811800:intron | 20.0% |
| !!! | GTATGTTAAACTTTTTCAAA+TGG | + | chr5_3:41226124-41226143 | Msa0811800:three_prime_UTR | 20.0% |
| ! | CTTCAAATAAAGACAAAGAA+AGG | - | chr5_3:41221664-41221683 | None:intergenic | 25.0% |
| ! | ACTTTCAAAATAGCAAACAT+AGG | + | chr5_3:41221849-41221868 | Msa0811800:intron | 25.0% |
| ! | CTTTCAAAATAGCAAACATA+GGG | + | chr5_3:41221850-41221869 | Msa0811800:intron | 25.0% |
| ! | AGAAAATAAGTCAATCCAAA+CGG | - | chr5_3:41221877-41221896 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCT+AGG | + | chr5_3:41221941-41221960 | Msa0811800:intron | 25.0% |
| ! | AAAAACTAAGCCAATTCAAA+CGG | + | chr5_3:41222067-41222086 | Msa0811800:intron | 25.0% |
| ! | CTATATACATACTATATAGG+AGG | - | chr5_3:41222202-41222221 | None:intergenic | 25.0% |
| ! | CTCCTATATAGTATGTATAT+AGG | + | chr5_3:41222200-41222219 | Msa0811800:intron | 25.0% |
| !! | TTATTACATTTTTGCAGTTC+AGG | + | chr5_3:41222499-41222518 | Msa0811800:intron | 25.0% |
| ! | GATAGATTGAGAATGTATTA+CGG | + | chr5_3:41222556-41222575 | Msa0811800:intron | 25.0% |
| ! | ATAAGAGTAAATCTTCAATC+TGG | - | chr5_3:41222640-41222659 | None:intergenic | 25.0% |
| ! | AATGAACAAAATACTGTAGT+GGG | - | chr5_3:41222763-41222782 | None:intergenic | 25.0% |
| ! | AAATGAACAAAATACTGTAG+TGG | - | chr5_3:41222764-41222783 | None:intergenic | 25.0% |
| !! | CAGTATTTTGTTCATTTTAG+AGG | + | chr5_3:41222767-41222786 | Msa0811800:intron | 25.0% |
| ! | TACCATTTACATATATGAAC+TGG | + | chr5_3:41222835-41222854 | Msa0811800:intron | 25.0% |
| ! | TATTGCAAGAACTTAAACTA+CGG | + | chr5_3:41222981-41223000 | Msa0811800:intron | 25.0% |
| !! | ATTGCATTTAAAAAAGTACG+TGG | + | chr5_3:41223064-41223083 | Msa0811800:intron | 25.0% |
| !!! | GTATATTTTAGAATCTGTTG+TGG | + | chr5_3:41223145-41223164 | Msa0811800:intron | 25.0% |
| ! | CATGTACAAATAACTTAACT+AGG | + | chr5_3:41223792-41223811 | Msa0811800:intron | 25.0% |
| ! | AGTTGCTATATTCCTATTAT+TGG | + | chr5_3:41223938-41223957 | Msa0811800:intron | 25.0% |
| ! | CTTGAGACTGTTAAATATTT+AGG | + | chr5_3:41224054-41224073 | Msa0811800:intron | 25.0% |
| ! | CAAATCTATTCTGAATAATC+TGG | + | chr5_3:41224083-41224102 | Msa0811800:intron | 25.0% |
| !! | TTTCTAGTGTTGTTAAATAG+AGG | + | chr5_3:41224284-41224303 | Msa0811800:intron | 25.0% |
| !! | CAATGAAAATTTTGCATTTC+TGG | - | chr5_3:41224609-41224628 | None:intergenic | 25.0% |
| ! | ACAAGAATAGGAAAGTTTAA+AGG | + | chr5_3:41224681-41224700 | Msa0811800:CDS | 25.0% |
| ! | AAATATAAGTAGCTTCTGTT+TGG | + | chr5_3:41225138-41225157 | Msa0811800:intron | 25.0% |
| ! | AATATAAGTAGCTTCTGTTT+GGG | + | chr5_3:41225139-41225158 | Msa0811800:intron | 25.0% |
| ! | GCATTTAGAAATTGGTTAAT+TGG | - | chr5_3:41225203-41225222 | None:intergenic | 25.0% |
| ! | ATTAACCAATTTCTAAATGC+TGG | + | chr5_3:41225203-41225222 | Msa0811800:intron | 25.0% |
| ! | TAAACTTATGAGTGTTTGAT+AGG | - | chr5_3:41225325-41225344 | None:intergenic | 25.0% |
| ! | TCAAACACTCATAAGTTTAT+AGG | + | chr5_3:41225326-41225345 | Msa0811800:intron | 25.0% |
| !!! | TTTCTGGTTACAATTTTTAC+TGG | + | chr5_3:41225596-41225615 | Msa0811800:intron | 25.0% |
| ! | ACAAAAACAATTTGAGAGAT+GGG | + | chr5_3:41225921-41225940 | Msa0811800:CDS | 25.0% |
| ! | ATGGTTTATTGTCATACAAA+TGG | + | chr5_3:41226143-41226162 | Msa0811800:three_prime_UTR | 25.0% |
| ! | TTGTTCTTGTTTCAGATGAA+GGG | - | chr5_3:41221383-41221402 | None:intergenic | 30.0% |
| ! | GAGAAAGGTTTTTGAATGAA+GGG | - | chr5_3:41221428-41221447 | None:intergenic | 30.0% |
| ! | AGAGAAAGGTTTTTGAATGA+AGG | - | chr5_3:41221429-41221448 | None:intergenic | 30.0% |
| ! | GGTTTCGTTTTATAAGTTTG+CGG | + | chr5_3:41221572-41221591 | Msa0811800:CDS | 30.0% |
| TGTTGACATAATTGCTTCAA+GGG | - | chr5_3:41221627-41221646 | None:intergenic | 30.0% | |
| TTGTTGACATAATTGCTTCA+AGG | - | chr5_3:41221628-41221647 | None:intergenic | 30.0% | |
| GAAGCAATTATGTCAACAAT+TGG | + | chr5_3:41221629-41221648 | Msa0811800:CDS | 30.0% | |
| TAGATTGAGAACAATTGCAT+AGG | - | chr5_3:41221822-41221841 | None:intergenic | 30.0% | |
| GAAAATAAGTCAATCCAAAC+GGG | - | chr5_3:41221876-41221895 | None:intergenic | 30.0% | |
| ATGGGAATTAGGGTTATATT+TGG | + | chr5_3:41222171-41222190 | Msa0811800:intron | 30.0% | |
| GGCCTATATACATACTATAT+AGG | - | chr5_3:41222205-41222224 | None:intergenic | 30.0% | |
| ATATAGTATGTATATAGGCC+TGG | + | chr5_3:41222205-41222224 | Msa0811800:intron | 30.0% | |
| GATCCAAGTCATTGTTAATT+CGG | - | chr5_3:41222329-41222348 | None:intergenic | 30.0% | |
| GTGCACATAGTGATAATTTA+GGG | + | chr5_3:41222471-41222490 | Msa0811800:intron | 30.0% | |
| TTTAGCATTAGTGAAGGTTA+TGG | + | chr5_3:41222803-41222822 | Msa0811800:intron | 30.0% | |
| TGCCAGTTCATATATGTAAA+TGG | - | chr5_3:41222840-41222859 | None:intergenic | 30.0% | |
| !!! | TGTAGCTAGGTTTTAAGTTA+TGG | + | chr5_3:41222890-41222909 | Msa0811800:intron | 30.0% |
| TGGTTATGTTGTGAATCTTA+TGG | + | chr5_3:41222910-41222929 | Msa0811800:intron | 30.0% | |
| TGTGAATCTTATGGTTATTG+TGG | + | chr5_3:41222919-41222938 | Msa0811800:intron | 30.0% | |
| TTAAACTACGGTTGAAATTG+TGG | + | chr5_3:41222993-41223012 | Msa0811800:intron | 30.0% | |
| GTTGAAATTGTGGTTATTGT+GGG | + | chr5_3:41223003-41223022 | Msa0811800:intron | 30.0% | |
| AGTTATGAGATCAAAACTGT+TGG | - | chr5_3:41223201-41223220 | None:intergenic | 30.0% | |
| !!! | ACAGTAAACACTTTTTCAGT+TGG | + | chr5_3:41223232-41223251 | Msa0811800:intron | 30.0% |
| AAAGGTTTCAAATTGCAAAC+TGG | - | chr5_3:41223359-41223378 | None:intergenic | 30.0% | |
| ! | AGTTTGCAATTTGAAACCTT+TGG | + | chr5_3:41223358-41223377 | Msa0811800:intron | 30.0% |
| ! | TATTTTCCAACCCTTTCAAT+AGG | - | chr5_3:41223869-41223888 | None:intergenic | 30.0% |
| GAAAGGGTTGGAAAATATAT+TGG | + | chr5_3:41223872-41223891 | Msa0811800:CDS | 30.0% | |
| TCAAAGAATTCCATTCCTTT+GGG | - | chr5_3:41223898-41223917 | None:intergenic | 30.0% | |
| ATCAAAGAATTCCATTCCTT+TGG | - | chr5_3:41223899-41223918 | None:intergenic | 30.0% | |
| !! | ATGTGCTTTCTAGCTAAAAA+TGG | + | chr5_3:41224151-41224170 | Msa0811800:intron | 30.0% |
| !! | TGTGCTTTCTAGCTAAAAAT+GGG | + | chr5_3:41224152-41224171 | Msa0811800:intron | 30.0% |
| TTGTTAAATAGAGGCTATGT+CGG | + | chr5_3:41224293-41224312 | Msa0811800:intron | 30.0% | |
| GATTATTACCCCAATTTGTA+AGG | + | chr5_3:41224479-41224498 | Msa0811800:intron | 30.0% | |
| AACTGCAATCCTTACAAATT+GGG | - | chr5_3:41224491-41224510 | None:intergenic | 30.0% | |
| AAACTGCAATCCTTACAAAT+TGG | - | chr5_3:41224492-41224511 | None:intergenic | 30.0% | |
| ! | AGATGGTTTACATCATCTTT+TGG | - | chr5_3:41224795-41224814 | None:intergenic | 30.0% |
| AATTTGATGCGAAAATCATG+TGG | + | chr5_3:41224987-41225006 | Msa0811800:intron | 30.0% | |
| AGATAAATCTGTGAGGAAAT+GGG | - | chr5_3:41225247-41225266 | None:intergenic | 30.0% | |
| AAGATAAATCTGTGAGGAAA+TGG | - | chr5_3:41225248-41225267 | None:intergenic | 30.0% | |
| CTCACAGATTTATCTTGAAT+CGG | + | chr5_3:41225252-41225271 | Msa0811800:intron | 30.0% | |
| TCACAGATTTATCTTGAATC+GGG | + | chr5_3:41225253-41225272 | Msa0811800:intron | 30.0% | |
| !! | GAACAAGATTTGTTAGTTTC+TGG | + | chr5_3:41225580-41225599 | Msa0811800:intron | 30.0% |
| AGACTCCATATTCATATTCT+GGG | - | chr5_3:41225843-41225862 | None:intergenic | 30.0% | |
| ! | TTACTGTTTTGCACAGAAAT+CGG | + | chr5_3:41225870-41225889 | Msa0811800:CDS | 30.0% |
| GACAAAAACAATTTGAGAGA+TGG | + | chr5_3:41225920-41225939 | Msa0811800:CDS | 30.0% | |
| CAAAAACAATTTGAGAGATG+GGG | + | chr5_3:41225922-41225941 | Msa0811800:CDS | 30.0% | |
| AAAAACAATTTGAGAGATGG+GGG | + | chr5_3:41225923-41225942 | Msa0811800:CDS | 30.0% | |
| ! | AGAATATGGTATGTTTCTGC+TGG | - | chr5_3:41221286-41221305 | None:intergenic | 35.0% |
| ! | TGTTCTTGTTTCAGATGAAG+GGG | - | chr5_3:41221382-41221401 | None:intergenic | 35.0% |
| ! | CTTGTTCTTGTTTCAGATGA+AGG | - | chr5_3:41221384-41221403 | None:intergenic | 35.0% |
| ! | GGTTTTTGAATGAAGGGTTA+GGG | - | chr5_3:41221422-41221441 | None:intergenic | 35.0% |
| ! | AGGTTTTTGAATGAAGGGTT+AGG | - | chr5_3:41221423-41221442 | None:intergenic | 35.0% |
| ! | GAAACGGGTATTGCATTATT+GGG | - | chr5_3:41221513-41221532 | None:intergenic | 35.0% |
| ! | AGAAACGGGTATTGCATTAT+TGG | - | chr5_3:41221514-41221533 | None:intergenic | 35.0% |
| AATAATGCAATACCCGTTTC+TGG | + | chr5_3:41221513-41221532 | Msa0811800:CDS | 35.0% | |
| ATAATGCAATACCCGTTTCT+GGG | + | chr5_3:41221514-41221533 | Msa0811800:CDS | 35.0% | |
| GGCAGTTTCCATATAGATTA+GGG | + | chr5_3:41222421-41222440 | Msa0811800:intron | 35.0% | |
| GGTGCACATAGTGATAATTT+AGG | + | chr5_3:41222470-41222489 | Msa0811800:intron | 35.0% | |
| TCCATCTTTAGCATTAGTGA+AGG | + | chr5_3:41222797-41222816 | Msa0811800:intron | 35.0% | |
| ACCTTCACTAATGCTAAAGA+TGG | - | chr5_3:41222801-41222820 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTGTCATAGCTG+AGG | + | chr5_3:41222861-41222880 | Msa0811800:intron | 35.0% |
| GGTTGAAATTGTGGTTATTG+TGG | + | chr5_3:41223002-41223021 | Msa0811800:intron | 35.0% | |
| AATTCTTGCATTGAGCTACA+TGG | - | chr5_3:41223037-41223056 | None:intergenic | 35.0% | |
| ATGTAGCTCAATGCAAGAAT+TGG | + | chr5_3:41223036-41223055 | Msa0811800:intron | 35.0% | |
| TGTAGCTCAATGCAAGAATT+GGG | + | chr5_3:41223037-41223056 | Msa0811800:intron | 35.0% | |
| GATCTTCGAAAAACGGTTTA+TGG | - | chr5_3:41223107-41223126 | None:intergenic | 35.0% | |
| !! | ACCGTTTTTCGAAGATCAAA+TGG | + | chr5_3:41223110-41223129 | Msa0811800:intron | 35.0% |
| GCCATTTGATCTTCGAAAAA+CGG | - | chr5_3:41223114-41223133 | None:intergenic | 35.0% | |
| !!! | GTAAACACTTTTTCAGTTGG+AGG | + | chr5_3:41223235-41223254 | Msa0811800:intron | 35.0% |
| ACTATGATTGTCTACTGCAT+TGG | - | chr5_3:41223282-41223301 | None:intergenic | 35.0% | |
| TAATGCACTATGTAGACCAA+AGG | - | chr5_3:41223377-41223396 | None:intergenic | 35.0% | |
| !! | TAGAGTCAAGTTGAAGAAAG+AGG | + | chr5_3:41223705-41223724 | Msa0811800:CDS | 35.0% |
| ! | TTTTCACAGATTGTCACTCT+TGG | + | chr5_3:41223827-41223846 | Msa0811800:intron | 35.0% |
| TTTCACAGATTGTCACTCTT+GGG | + | chr5_3:41223828-41223847 | Msa0811800:intron | 35.0% | |
| TACGGTATCACCTATTGAAA+GGG | + | chr5_3:41223856-41223875 | Msa0811800:CDS | 35.0% | |
| TGGAAAATATATTGGCCCAA+AGG | + | chr5_3:41223880-41223899 | Msa0811800:CDS | 35.0% | |
| AATATATTGGCCCAAAGGAA+TGG | + | chr5_3:41223885-41223904 | Msa0811800:CDS | 35.0% | |
| ATATAGCAACTCACAGTATC+AGG | - | chr5_3:41223929-41223948 | None:intergenic | 35.0% | |
| CATTCACGTTTAAATTCTGC+AGG | - | chr5_3:41224016-41224035 | None:intergenic | 35.0% | |
| CTGCAGAATTTAAACGTGAA+TGG | + | chr5_3:41224014-41224033 | Msa0811800:intron | 35.0% | |
| !! | CGTGAATGGCTTAATTTGTT+TGG | + | chr5_3:41224028-41224047 | Msa0811800:intron | 35.0% |
| TTTACATTTGCCTTCAGCAA+TGG | - | chr5_3:41224116-41224135 | None:intergenic | 35.0% | |
| CTGAAGGCAAATGTAAAATG+TGG | + | chr5_3:41224119-41224138 | Msa0811800:intron | 35.0% | |
| CTTGCAAGCTGTAATATTGA+AGG | + | chr5_3:41224184-41224203 | Msa0811800:intron | 35.0% | |
| ! | TGTTTTGTGATGCACTATAC+TGG | + | chr5_3:41224359-41224378 | Msa0811800:intron | 35.0% |
| CACTGTAATCTGTAACGTAT+CGG | + | chr5_3:41224400-41224419 | Msa0811800:intron | 35.0% | |
| GATCGCAAAAAATAGCAGTT+TGG | - | chr5_3:41224433-41224452 | None:intergenic | 35.0% | |
| ACTGCAATCCTTACAAATTG+GGG | - | chr5_3:41224490-41224509 | None:intergenic | 35.0% | |
| GTAGAGTAGATACTTTGACA+TGG | + | chr5_3:41224566-41224585 | Msa0811800:intron | 35.0% | |
| CTATTGACATCTTCATTTGC+AGG | + | chr5_3:41224629-41224648 | Msa0811800:intron | 35.0% | |
| ATTTCGTGAATTCCCATCTT+GGG | + | chr5_3:41224728-41224747 | Msa0811800:CDS | 35.0% | |
| !!! | TCGTTTCTTTTTCAGCACTT+TGG | - | chr5_3:41224821-41224840 | None:intergenic | 35.0% |
| TGCGTATTAACAAGTGGAAA+TGG | - | chr5_3:41225044-41225063 | None:intergenic | 35.0% | |
| TGACTTTGCGTATTAACAAG+TGG | - | chr5_3:41225050-41225069 | None:intergenic | 35.0% | |
| CTACTCCAGCATTTAGAAAT+TGG | - | chr5_3:41225211-41225230 | None:intergenic | 35.0% | |
| CGATTCAAGATAAATCTGTG+AGG | - | chr5_3:41225254-41225273 | None:intergenic | 35.0% | |
| ! | TATCTTGAATCGGGATCTTT+TGG | + | chr5_3:41225262-41225281 | Msa0811800:intron | 35.0% |
| !!! | CTTTTGGCTCAACTTTATCT+TGG | + | chr5_3:41225278-41225297 | Msa0811800:intron | 35.0% |
| GTGAAAGTAGAGATTTCGAA+AGG | - | chr5_3:41225410-41225429 | None:intergenic | 35.0% | |
| AATTTCCTAGGTTTATCACC+TGG | + | chr5_3:41225648-41225667 | Msa0811800:intron | 35.0% | |
| TGGAATCCTGAAATATCTTG+AGG | + | chr5_3:41225675-41225694 | Msa0811800:CDS | 35.0% | |
| GAACTTCCTCAAGATATTTC+AGG | - | chr5_3:41225684-41225703 | None:intergenic | 35.0% | |
| GAATCCCCAGAATATGAATA+TGG | + | chr5_3:41225835-41225854 | Msa0811800:CDS | 35.0% | |
| GACTCCATATTCATATTCTG+GGG | - | chr5_3:41225842-41225861 | None:intergenic | 35.0% | |
| GAGACTCCATATTCATATTC+TGG | - | chr5_3:41225844-41225863 | None:intergenic | 35.0% | |
| GATTTCTGTGCAAAACAGTA+AGG | - | chr5_3:41225871-41225890 | None:intergenic | 35.0% | |
| ACAGAAATCGGAAGAAGAAA+AGG | + | chr5_3:41225882-41225901 | Msa0811800:CDS | 35.0% | |
| GGTTGAGGAAGACAAGAATA+TGG | - | chr5_3:41221300-41221319 | None:intergenic | 40.0% | |
| CTTGTAGTAAGAGACAGGAA+TGG | - | chr5_3:41221321-41221340 | None:intergenic | 40.0% | |
| CATTCCTGTCTCTTACTACA+AGG | + | chr5_3:41221319-41221338 | Msa0811800:CDS | 40.0% | |
| !! | GAGTGTTGGAGAATAGAGAA+AGG | - | chr5_3:41221443-41221462 | None:intergenic | 40.0% |
| !! | GCTTTGAAGAGAATGAGTGT+TGG | - | chr5_3:41221457-41221476 | None:intergenic | 40.0% |
| TCTAAGTGTTTCTCTCACTC+TGG | + | chr5_3:41221486-41221505 | Msa0811800:CDS | 40.0% | |
| AGATTCAACCAACCCAGAAA+CGG | - | chr5_3:41221529-41221548 | None:intergenic | 40.0% | |
| CATGGAGTAAGACCTCAATT+TGG | + | chr5_3:41221731-41221750 | Msa0811800:intron | 40.0% | |
| AGACCTCAATTTGGTCTCTT+AGG | + | chr5_3:41221740-41221759 | Msa0811800:intron | 40.0% | |
| AGTCCTAAGAGACCAAATTG+AGG | - | chr5_3:41221746-41221765 | None:intergenic | 40.0% | |
| TTCTAGCAGGAACACTATGA+GGG | - | chr5_3:41222094-41222113 | None:intergenic | 40.0% | |
| ATTCTAGCAGGAACACTATG+AGG | - | chr5_3:41222095-41222114 | None:intergenic | 40.0% | |
| TGTTCCTGCTAGAATTTGCA+GGG | + | chr5_3:41222100-41222119 | Msa0811800:intron | 40.0% | |
| AGTATGTATATAGGCCTGGT+TGG | + | chr5_3:41222209-41222228 | Msa0811800:intron | 40.0% | |
| AATCATCTGAGCACGAAATC+CGG | - | chr5_3:41222260-41222279 | None:intergenic | 40.0% | |
| AGTCATTGTTAATTCGGCCT+GGG | - | chr5_3:41222323-41222342 | None:intergenic | 40.0% | |
| AAGTCATTGTTAATTCGGCC+TGG | - | chr5_3:41222324-41222343 | None:intergenic | 40.0% | |
| AGGCCGAATTAACAATGACT+TGG | + | chr5_3:41222323-41222342 | Msa0811800:intron | 40.0% | |
| TTGTTCCTTAGCAGAGACTT+TGG | + | chr5_3:41222353-41222372 | Msa0811800:intron | 40.0% | |
| TGTTCCTTAGCAGAGACTTT+GGG | + | chr5_3:41222354-41222373 | Msa0811800:intron | 40.0% | |
| GGGCAGTTTCCATATAGATT+AGG | + | chr5_3:41222420-41222439 | Msa0811800:intron | 40.0% | |
| TTTCCATATAGATTAGGGCC+AGG | + | chr5_3:41222426-41222445 | Msa0811800:intron | 40.0% | |
| TCATGGTCCAAAATCCATAC+AGG | + | chr5_3:41222449-41222468 | Msa0811800:intron | 40.0% | |
| ! | ATGTGCACCTGTATGGATTT+TGG | - | chr5_3:41222459-41222478 | None:intergenic | 40.0% |
| TATCACTATGTGCACCTGTA+TGG | - | chr5_3:41222466-41222485 | None:intergenic | 40.0% | |
| TTGCAGTTCAGGTACCAAAT+AGG | + | chr5_3:41222510-41222529 | Msa0811800:intron | 40.0% | |
| TTCAGGTACCAAATAGGAGA+GGG | + | chr5_3:41222516-41222535 | Msa0811800:intron | 40.0% | |
| TTATCACTCCCTCTCCTATT+TGG | - | chr5_3:41222527-41222546 | None:intergenic | 40.0% | |
| TGACTCTAACATGATCCCAT+CGG | - | chr5_3:41223693-41223712 | None:intergenic | 40.0% | |
| ! | AGCAAAGTAGTTCGGTCTTT+TGG | - | chr5_3:41223747-41223766 | None:intergenic | 40.0% |
| CTTTCAATAGGTGATACCGT+AGG | - | chr5_3:41223857-41223876 | None:intergenic | 40.0% | |
| CTACGGTATCACCTATTGAA+AGG | + | chr5_3:41223855-41223874 | Msa0811800:CDS | 40.0% | |
| GTATCACCTATTGAAAGGGT+TGG | + | chr5_3:41223860-41223879 | Msa0811800:CDS | 40.0% | |
| GAATCGCTGTTGTTATGTGA+TGG | + | chr5_3:41223981-41224000 | Msa0811800:intron | 40.0% | |
| !! | TGCACTATACTGGTTCTAAC+AGG | + | chr5_3:41224369-41224388 | Msa0811800:intron | 40.0% |
| TTGACATCTTCATTTGCAGG+TGG | + | chr5_3:41224632-41224651 | Msa0811800:intron | 40.0% | |
| TCACGAAATGATGTCGTACA+AGG | - | chr5_3:41224717-41224736 | None:intergenic | 40.0% | |
| CATTTCGTGAATTCCCATCT+TGG | + | chr5_3:41224727-41224746 | Msa0811800:CDS | 40.0% | |
| ! | TGGATGCTCAACATCTTTTC+TGG | - | chr5_3:41224775-41224794 | None:intergenic | 40.0% |
| TTTCAGCACTTTGGTCTAGA+TGG | - | chr5_3:41224812-41224831 | None:intergenic | 40.0% | |
| TCTCAGCAAAGGTTTCAAAG+AGG | + | chr5_3:41224920-41224939 | Msa0811800:CDS | 40.0% | |
| AGATACATGTACTTGATGCC+CGG | - | chr5_3:41225177-41225196 | None:intergenic | 40.0% | |
| TGTTTGATAGGTCTTCGCAT+CGG | - | chr5_3:41225313-41225332 | None:intergenic | 40.0% | |
| GGAAATTTCAAGCTGTGCTA+TGG | + | chr5_3:41225781-41225800 | Msa0811800:CDS | 40.0% | |
| AATCGGAAGAAGAAAAGGAG+AGG | + | chr5_3:41225887-41225906 | Msa0811800:CDS | 40.0% | |
| ATCGGAAGAAGAAAAGGAGA+GGG | + | chr5_3:41225888-41225907 | Msa0811800:CDS | 40.0% | |
| ATCATAGGTGGTCCTGATAA+GGG | + | chr5_3:41225946-41225965 | Msa0811800:CDS | 40.0% | |
| ATGGAGGCTGCATTTAGATG+TGG | - | chr5_3:41221255-41221274 | None:intergenic | 45.0% | |
| !! | GTTTCTGCTGGTTCTGAGAA+TGG | - | chr5_3:41221274-41221293 | None:intergenic | 45.0% |
| GTAAGAGACAGGAATGGTTG+AGG | - | chr5_3:41221315-41221334 | None:intergenic | 45.0% | |
| GCATCCTTGTAGTAAGAGAC+AGG | - | chr5_3:41221326-41221345 | None:intergenic | 45.0% | |
| GATTCAACCAACCCAGAAAC+GGG | - | chr5_3:41221528-41221547 | None:intergenic | 45.0% | |
| !! | GTTTCTGGGTTGGTTGAATC+TGG | + | chr5_3:41221528-41221547 | Msa0811800:CDS | 45.0% |
| TGAAGTAGAGTCTCTTGTCG+TGG | + | chr5_3:41221551-41221570 | Msa0811800:CDS | 45.0% | |
| CACGCAAAACAGCATGATCA+GGG | - | chr5_3:41221602-41221621 | None:intergenic | 45.0% | |
| ACACGCAAAACAGCATGATC+AGG | - | chr5_3:41221603-41221622 | None:intergenic | 45.0% | |
| CTATGAGGGACCGTTTGAAT+TGG | - | chr5_3:41222080-41222099 | None:intergenic | 45.0% | |
| GTGTTCCTGCTAGAATTTGC+AGG | + | chr5_3:41222099-41222118 | Msa0811800:intron | 45.0% | |
| GTTCCTGCTAGAATTTGCAG+GGG | + | chr5_3:41222101-41222120 | Msa0811800:intron | 45.0% | |
| TTCCTGCTAGAATTTGCAGG+GGG | + | chr5_3:41222102-41222121 | Msa0811800:intron | 45.0% | |
| TTGAGAGACGGATGGGAATT+AGG | + | chr5_3:41222160-41222179 | Msa0811800:intron | 45.0% | |
| TGAGAGACGGATGGGAATTA+GGG | + | chr5_3:41222161-41222180 | Msa0811800:intron | 45.0% | |
| ! | GTTGGCTCCATTTAGGGTTA+AGG | + | chr5_3:41222227-41222246 | Msa0811800:intron | 45.0% |
| ! | TCCATTTAGGGTTAAGGAGG+TGG | + | chr5_3:41222233-41222252 | Msa0811800:intron | 45.0% |
| TCCACCTCCTTAACCCTAAA+TGG | - | chr5_3:41222237-41222256 | None:intergenic | 45.0% | |
| GGATTTCGTGCTCAGATGAT+TGG | + | chr5_3:41222259-41222278 | Msa0811800:intron | 45.0% | |
| AATTCGGCCTGGGAAAATCA+AGG | - | chr5_3:41222313-41222332 | None:intergenic | 45.0% | |
| TCATCCCAAAGTCTCTGCTA+AGG | - | chr5_3:41222361-41222380 | None:intergenic | 45.0% | |
| TGGTCCAGGTTACTTGGATA+TGG | + | chr5_3:41222399-41222418 | Msa0811800:intron | 45.0% | |
| GGTCCAGGTTACTTGGATAT+GGG | + | chr5_3:41222400-41222419 | Msa0811800:intron | 45.0% | |
| TGACCTGGCCCTAATCTATA+TGG | - | chr5_3:41222432-41222451 | None:intergenic | 45.0% | |
| TATAGATTAGGGCCAGGTCA+TGG | + | chr5_3:41222432-41222451 | Msa0811800:intron | 45.0% | |
| ! | ATGGATTTTGGACCATGACC+TGG | - | chr5_3:41222447-41222466 | None:intergenic | 45.0% |
| GTTCAGGTACCAAATAGGAG+AGG | + | chr5_3:41222515-41222534 | Msa0811800:intron | 45.0% | |
| CAGACCTCAGCTATGACAAA+AGG | - | chr5_3:41222868-41222887 | None:intergenic | 45.0% | |
| ! | ATTGTGGTTATTGTGGGCTG+TGG | + | chr5_3:41223009-41223028 | Msa0811800:intron | 45.0% |
| TAGTCTGACATTGCGACAGT+TGG | + | chr5_3:41223298-41223317 | Msa0811800:intron | 45.0% | |
| AGTCTGACATTGCGACAGTT+GGG | + | chr5_3:41223299-41223318 | Msa0811800:intron | 45.0% | |
| GATATTGCTCAGCGTGTTTC+AGG | + | chr5_3:41223454-41223473 | Msa0811800:intron | 45.0% | |
| CTTGCGCCTGAAGGAATTAA+TGG | + | chr5_3:41223487-41223506 | Msa0811800:CDS | 45.0% | |
| AGGCTGCCATTAATTCCTTC+AGG | - | chr5_3:41223496-41223515 | None:intergenic | 45.0% | |
| GGAATTAATGGCAGCCTATG+CGG | + | chr5_3:41223499-41223518 | Msa0811800:CDS | 45.0% | |
| TCAGAGTGATGATCGTCTGA+AGG | + | chr5_3:41223558-41223577 | Msa0811800:CDS | 45.0% | |
| CAGAGTGATGATCGTCTGAA+GGG | + | chr5_3:41223559-41223578 | Msa0811800:CDS | 45.0% | |
| AGAGTGATGATCGTCTGAAG+GGG | + | chr5_3:41223560-41223579 | Msa0811800:CDS | 45.0% | |
| AGACGTATTGAATCGCCTGT+CGG | + | chr5_3:41223586-41223605 | Msa0811800:CDS | 45.0% | |
| ! | TCCATGATTACCGTGATGGA+TGG | - | chr5_3:41223626-41223645 | None:intergenic | 45.0% |
| TGTGTCCATGATTACCGTGA+TGG | - | chr5_3:41223630-41223649 | None:intergenic | 45.0% | |
| CTAACATGATCCCATCGGAA+AGG | - | chr5_3:41223688-41223707 | None:intergenic | 45.0% | |
| TGGTTGTGTACCATTGCTGA+AGG | + | chr5_3:41224103-41224122 | Msa0811800:intron | 45.0% | |
| TGCAGTTTCGACGTCATTTG+AGG | + | chr5_3:41224504-41224523 | Msa0811800:intron | 45.0% | |
| ! | TGAATTCCCATCTTGGGTTG+AGG | + | chr5_3:41224734-41224753 | Msa0811800:CDS | 45.0% |
| AACGTTCCTCAACCCAAGAT+GGG | - | chr5_3:41224743-41224762 | None:intergenic | 45.0% | |
| AAACGTTCCTCAACCCAAGA+TGG | - | chr5_3:41224744-41224763 | None:intergenic | 45.0% | |
| GTGCAATACATTGCAACACG+TGG | - | chr5_3:41224864-41224883 | None:intergenic | 45.0% | |
| CGTGTTGCAATGTATTGCAC+CGG | + | chr5_3:41224864-41224883 | Msa0811800:CDS | 45.0% | |
| GTGTTGCAATGTATTGCACC+GGG | + | chr5_3:41224865-41224884 | Msa0811800:CDS | 45.0% | |
| TGTTGCAATGTATTGCACCG+GGG | + | chr5_3:41224866-41224885 | Msa0811800:CDS | 45.0% | |
| TTTCTCACAACGAATACCCC+CGG | - | chr5_3:41224886-41224905 | None:intergenic | 45.0% | |
| TCAAGTCTGCTTCTCAGCAA+AGG | + | chr5_3:41224909-41224928 | Msa0811800:CDS | 45.0% | |
| ACTCATGTCTTCAGCTACTG+GGG | - | chr5_3:41225107-41225126 | None:intergenic | 45.0% | |
| CACTCATGTCTTCAGCTACT+GGG | - | chr5_3:41225108-41225127 | None:intergenic | 45.0% | |
| ACACTCATGTCTTCAGCTAC+TGG | - | chr5_3:41225109-41225128 | None:intergenic | 45.0% | |
| AGTAGCTGAAGACATGAGTG+TGG | + | chr5_3:41225108-41225127 | Msa0811800:intron | 45.0% | |
| TTCTGTTTGGGTCCCTTTCT+TGG | + | chr5_3:41225151-41225170 | Msa0811800:intron | 45.0% | |
| TCCTAGGTTTATCACCTGGA+AGG | + | chr5_3:41225652-41225671 | Msa0811800:intron | 45.0% | |
| ACCTTCCAGGTGATAAACCT+AGG | - | chr5_3:41225656-41225675 | None:intergenic | 45.0% | |
| TAGGTTTATCACCTGGAAGG+TGG | + | chr5_3:41225655-41225674 | Msa0811800:intron | 45.0% | |
| ATTTCAGGATTCCACCTTCC+AGG | - | chr5_3:41225669-41225688 | None:intergenic | 45.0% | |
| TTCCAGAGAGACAAAGCCTT+TGG | + | chr5_3:41225701-41225720 | Msa0811800:CDS | 45.0% | |
| TCCAGAGAGACAAAGCCTTT+GGG | + | chr5_3:41225702-41225721 | Msa0811800:CDS | 45.0% | |
| CTGTGCAAAACAGTAAGGAC+AGG | - | chr5_3:41225866-41225885 | None:intergenic | 45.0% | |
| TTTGAGAGATGGGGGATCAT+AGG | + | chr5_3:41225931-41225950 | Msa0811800:CDS | 45.0% | |
| GATCATAGGTGGTCCTGATA+AGG | + | chr5_3:41225945-41225964 | Msa0811800:CDS | 45.0% | |
| TGAACAGAACAGTGCTAGCA+GGG | + | chr5_3:41225984-41226003 | Msa0811800:CDS | 45.0% | |
| !!! | TTATTTATGTATATATTTTT+TGG | + | chr5_3:41222656-41222675 | Msa0811800:intron | 5.0% |
| !! | TCTGCTGGTTCTGAGAATGG+AGG | - | chr5_3:41221271-41221290 | None:intergenic | 50.0% |
| ! | TGCAATACCCGTTTCTGGGT+TGG | + | chr5_3:41221518-41221537 | Msa0811800:CDS | 50.0% |
| TAGCAAACATAGGGCCCGTT+TGG | + | chr5_3:41221859-41221878 | Msa0811800:intron | 50.0% | |
| TCCTGCTAGAATTTGCAGGG+GGG | + | chr5_3:41222103-41222122 | Msa0811800:intron | 50.0% | |
| AGGTAGGTTCAGTTGCTGAC+AGG | + | chr5_3:41222135-41222154 | Msa0811800:intron | 50.0% | |
| !! | TGCTGACAGGTGTTGAGAGA+CGG | + | chr5_3:41222148-41222167 | Msa0811800:intron | 50.0% |
| !! | ACAGGTGTTGAGAGACGGAT+GGG | + | chr5_3:41222153-41222172 | Msa0811800:intron | 50.0% |
| AACCCTAAATGGAGCCAACC+AGG | - | chr5_3:41222226-41222245 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTAGGGTTAAGG+AGG | + | chr5_3:41222230-41222249 | Msa0811800:intron | 50.0% |
| TTAGGGTTAAGGAGGTGGAC+CGG | + | chr5_3:41222238-41222257 | Msa0811800:intron | 50.0% | |
| TGGGATGAGTGCGTAATGCT+CGG | + | chr5_3:41222373-41222392 | Msa0811800:intron | 50.0% | |
| CTGCCCATATCCAAGTAACC+TGG | - | chr5_3:41222406-41222425 | None:intergenic | 50.0% | |
| GCTGAGGTCTGTATGTAGCT+AGG | + | chr5_3:41222877-41222896 | Msa0811800:intron | 50.0% | |
| ATGGTTATTGTGGCCCCATC+TGG | + | chr5_3:41222929-41222948 | Msa0811800:intron | 50.0% | |
| AGTCTACAGCCTACGCAACT+GGG | - | chr5_3:41222955-41222974 | None:intergenic | 50.0% | |
| TAGTCTACAGCCTACGCAAC+TGG | - | chr5_3:41222956-41222975 | None:intergenic | 50.0% | |
| ATTGCTCAGCGTGTTTCAGG+CGG | + | chr5_3:41223457-41223476 | Msa0811800:intron | 50.0% | |
| GGTATCATTCTTGCGCCTGA+AGG | + | chr5_3:41223478-41223497 | Msa0811800:CDS | 50.0% | |
| GCCATCCATCACGGTAATCA+TGG | + | chr5_3:41223622-41223641 | Msa0811800:CDS | 50.0% | |
| TGTCACTCTTGGGATGCCTA+CGG | + | chr5_3:41223838-41223857 | Msa0811800:CDS | 50.0% | |
| GTTGCAATGTATTGCACCGG+GGG | + | chr5_3:41224867-41224886 | Msa0811800:CDS | 50.0% | |
| ! | TCCCAAAGGCTTTGTCTCTC+TGG | - | chr5_3:41225706-41225725 | None:intergenic | 50.0% |
| AGAGAGACAAAGCCTTTGGG+AGG | + | chr5_3:41225705-41225724 | Msa0811800:CDS | 50.0% | |
| ! | GAGAGACAAAGCCTTTGGGA+GGG | + | chr5_3:41225706-41225725 | Msa0811800:CDS | 50.0% |
| AAGAGAGTCTCTGTCGAGCA+TGG | + | chr5_3:41225748-41225767 | Msa0811800:CDS | 50.0% | |
| AGTCTCTGTCGAGCATGGTT+TGG | + | chr5_3:41225753-41225772 | Msa0811800:CDS | 50.0% | |
| TCCATGTCAGCATCACTCAC+AGG | - | chr5_3:41225817-41225836 | None:intergenic | 50.0% | |
| GTGAACAGAACAGTGCTAGC+AGG | + | chr5_3:41225983-41226002 | Msa0811800:CDS | 50.0% | |
| !! | TGCCTCCTCTGAAATGCGTT+AGG | + | chr5_3:41226086-41226105 | Msa0811800:three_prime_UTR | 50.0% |
| CTCCTAACGCATTTCAGAGG+AGG | - | chr5_3:41226091-41226110 | None:intergenic | 50.0% | |
| GCACTCCTAACGCATTTCAG+AGG | - | chr5_3:41226094-41226113 | None:intergenic | 50.0% | |
| CCTGCTAGAATTTGCAGGGG+GGG | + | chr5_3:41222104-41222123 | Msa0811800:intron | 55.0% | |
| CTGCTAGAATTTGCAGGGGG+GGG | + | chr5_3:41222105-41222124 | Msa0811800:intron | 55.0% | |
| TGCTAGAATTTGCAGGGGGG+GGG | + | chr5_3:41222106-41222125 | Msa0811800:intron | 55.0% | |
| !! | GACAGGTGTTGAGAGACGGA+TGG | + | chr5_3:41222152-41222171 | Msa0811800:intron | 55.0% |
| ! | AGGCCTGGTTGGCTCCATTT+AGG | + | chr5_3:41222220-41222239 | Msa0811800:intron | 55.0% |
| ! | GGCCTGGTTGGCTCCATTTA+GGG | + | chr5_3:41222221-41222240 | Msa0811800:intron | 55.0% |
| TAGCTGCGAGATTAGCGGTG+TGG | - | chr5_3:41222285-41222304 | None:intergenic | 55.0% | |
| ACCGCTAATCTCGCAGCTAC+CGG | + | chr5_3:41222286-41222305 | Msa0811800:intron | 55.0% | |
| ! | TACCGGGCCTTGATTTTCCC+AGG | + | chr5_3:41222303-41222322 | Msa0811800:intron | 55.0% |
| GAGTGCGTAATGCTCGGCAA+TGG | + | chr5_3:41222379-41222398 | Msa0811800:intron | 55.0% | |
| GTAATGCTCGGCAATGGTCC+AGG | + | chr5_3:41222385-41222404 | Msa0811800:intron | 55.0% | |
| CGGCAATGGTCCAGGTTACT+TGG | + | chr5_3:41222393-41222412 | Msa0811800:intron | 55.0% | |
| ! | GTCTACTGCATTGGCAGCGT+TGG | - | chr5_3:41223273-41223292 | None:intergenic | 55.0% |
| CCAGTTCTCCTCTTGCTGCT+GGG | + | chr5_3:41223653-41223672 | Msa0811800:CDS | 55.0% | |
| CAGTTCTCCTCTTGCTGCTG+GGG | + | chr5_3:41223654-41223673 | Msa0811800:CDS | 55.0% | |
| GGAAGACGCACCTTTCCGAT+GGG | + | chr5_3:41223675-41223694 | Msa0811800:CDS | 55.0% | |
| GTTTGGGTCCCTTTCTTGGC+CGG | + | chr5_3:41225155-41225174 | Msa0811800:intron | 55.0% | |
| TTTGGGTCCCTTTCTTGGCC+GGG | + | chr5_3:41225156-41225175 | Msa0811800:intron | 55.0% | |
| CTTGATGCCCGGCCAAGAAA+GGG | - | chr5_3:41225166-41225185 | None:intergenic | 55.0% | |
| ACTTGATGCCCGGCCAAGAA+AGG | - | chr5_3:41225167-41225186 | None:intergenic | 55.0% | |
| ! | CAAAGCACTCTCCCTCCCAA+AGG | - | chr5_3:41225720-41225739 | None:intergenic | 55.0% |
| ! | GTCGAGCATGGTTTGGCACA+AGG | + | chr5_3:41225760-41225779 | Msa0811800:CDS | 55.0% |
| GCCTGTGAGTGATGCTGACA+TGG | + | chr5_3:41225813-41225832 | Msa0811800:CDS | 55.0% | |
| GAGAGATGGGGGATCATAGG+TGG | + | chr5_3:41225934-41225953 | Msa0811800:CDS | 55.0% | |
| GCACTGTTCTGTTCACGCGT+CGG | - | chr5_3:41225979-41225998 | None:intergenic | 55.0% | |
| CCCCCCCTGCAAATTCTAGC+AGG | - | chr5_3:41222107-41222126 | None:intergenic | 60.0% | |
| GCTAGAATTTGCAGGGGGGG+GGG | + | chr5_3:41222107-41222126 | Msa0811800:intron | 60.0% | |
| CTAGAATTTGCAGGGGGGGG+GGG | + | chr5_3:41222108-41222127 | Msa0811800:intron | 60.0% | |
| TAGAATTTGCAGGGGGGGGG+GGG | + | chr5_3:41222109-41222128 | Msa0811800:intron | 60.0% | |
| CCCGGTAGCTGCGAGATTAG+CGG | - | chr5_3:41222290-41222309 | None:intergenic | 60.0% | |
| CCGCTAATCTCGCAGCTACC+GGG | + | chr5_3:41222287-41222306 | Msa0811800:intron | 60.0% | |
| GGCCTGGGAAAATCAAGGCC+CGG | - | chr5_3:41222308-41222327 | None:intergenic | 60.0% | |
| CTACGCAACTGGGCCAGATG+GGG | - | chr5_3:41222945-41222964 | None:intergenic | 60.0% | |
| CCTACGCAACTGGGCCAGAT+GGG | - | chr5_3:41222946-41222965 | None:intergenic | 60.0% | |
| TGAATCGCCTGTCGGTCCTG+AGG | + | chr5_3:41223594-41223613 | Msa0811800:CDS | 60.0% | |
| ! | TGATGGATGGCCTCCTCCTC+AGG | - | chr5_3:41223613-41223632 | None:intergenic | 60.0% |
| GAGGAGGAGGCCATCCATCA+CGG | + | chr5_3:41223613-41223632 | Msa0811800:CDS | 60.0% | |
| GCCAGTTCTCCTCTTGCTGC+TGG | + | chr5_3:41223652-41223671 | Msa0811800:CDS | 60.0% | |
| CCCAGCAGCAAGAGGAGAAC+TGG | - | chr5_3:41223656-41223675 | None:intergenic | 60.0% | |
| GGGAAGACGCACCTTTCCGA+TGG | + | chr5_3:41223674-41223693 | Msa0811800:CDS | 60.0% | |
| ! | TGTTCTGTTCACGCGTCGGC+CGG | - | chr5_3:41225975-41225994 | None:intergenic | 60.0% |
| CCCATCTGGCCCAGTTGCGT+AGG | + | chr5_3:41222943-41222962 | Msa0811800:intron | 65.0% | |
| GCCTACGCAACTGGGCCAGA+TGG | - | chr5_3:41222947-41222966 | None:intergenic | 65.0% | |
| ATGGCAGCCTATGCGGCACG+CGG | + | chr5_3:41223506-41223525 | Msa0811800:CDS | 65.0% | |
| ATCGCCTGTCGGTCCTGAGG+AGG | + | chr5_3:41223597-41223616 | Msa0811800:CDS | 65.0% | |
| GCGTCTTCCCCAGCAGCAAG+AGG | - | chr5_3:41223664-41223683 | None:intergenic | 65.0% | |
| GTGGTCCTGATAAGGGCCGC+CGG | + | chr5_3:41225953-41225972 | Msa0811800:CDS | 65.0% | |
| TGGCAGCCTATGCGGCACGC+GGG | + | chr5_3:41223507-41223526 | Msa0811800:CDS | 70.0% | |
| CCTATGCGGCACGCGGGAGT+CGG | + | chr5_3:41223513-41223532 | Msa0811800:CDS | 70.0% | |
| GCCTGTCGGTCCTGAGGAGG+AGG | + | chr5_3:41223600-41223619 | Msa0811800:CDS | 70.0% | |
| GCCTCCTCCTCAGGACCGAC+AGG | - | chr5_3:41223604-41223623 | None:intergenic | 70.0% | |
| ! | TCTGTTCACGCGTCGGCCGG+CGG | - | chr5_3:41225972-41225991 | None:intergenic | 70.0% |
| ! | TTGCAGGGGGGGGGGGGTGT+AGG | + | chr5_3:41222115-41222134 | Msa0811800:intron | 75.0% |
| ! | AGGGGGGGGGGGGTGTAGGT+AGG | + | chr5_3:41222119-41222138 | Msa0811800:intron | 75.0% |
| CCGACTCCCGCGTGCCGCAT+AGG | - | chr5_3:41223516-41223535 | None:intergenic | 75.0% | |
| ATGCGGCACGCGGGAGTCGG+TGG | + | chr5_3:41223516-41223535 | Msa0811800:CDS | 75.0% | |
| GTCGGCCGGCGGCCCTTATC+AGG | - | chr5_3:41225961-41225980 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 41221239 | 41226234 | 41221239 | ID=Msa0811800;Name=Msa0811800 |
| chr5_3 | mRNA | 41221239 | 41226234 | 41221239 | ID=Msa0811800-mRNA-1;Parent=Msa0811800;Name=Msa0811800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=7|1|1|1|1|1|5|199|477 |
| chr5_3 | exon | 41221239 | 41221650 | 41221239 | ID=Msa0811800-mRNA-1:exon:12694;Parent=Msa0811800-mRNA-1 |
| chr5_3 | exon | 41223466 | 41223726 | 41223466 | ID=Msa0811800-mRNA-1:exon:12695;Parent=Msa0811800-mRNA-1 |
| chr5_3 | exon | 41223836 | 41223934 | 41223836 | ID=Msa0811800-mRNA-1:exon:12696;Parent=Msa0811800-mRNA-1 |
| chr5_3 | exon | 41224651 | 41224941 | 41224651 | ID=Msa0811800-mRNA-1:exon:12697;Parent=Msa0811800-mRNA-1 |
| chr5_3 | exon | 41225658 | 41226234 | 41225658 | ID=Msa0811800-mRNA-1:exon:12698;Parent=Msa0811800-mRNA-1 |
| chr5_3 | five_prime_UTR | 41221239 | 41221245 | 41221239 | ID=Msa0811800-mRNA-1:five_prime_utr;Parent=Msa0811800-mRNA-1 |
| chr5_3 | CDS | 41221246 | 41221650 | 41221246 | ID=Msa0811800-mRNA-1:cds;Parent=Msa0811800-mRNA-1 |
| chr5_3 | CDS | 41223466 | 41223726 | 41223466 | ID=Msa0811800-mRNA-1:cds;Parent=Msa0811800-mRNA-1 |
| chr5_3 | CDS | 41223836 | 41223934 | 41223836 | ID=Msa0811800-mRNA-1:cds;Parent=Msa0811800-mRNA-1 |
| chr5_3 | CDS | 41224651 | 41224941 | 41224651 | ID=Msa0811800-mRNA-1:cds;Parent=Msa0811800-mRNA-1 |
| chr5_3 | CDS | 41225658 | 41226035 | 41225658 | ID=Msa0811800-mRNA-1:cds;Parent=Msa0811800-mRNA-1 |
| chr5_3 | three_prime_UTR | 41226036 | 41226234 | 41226036 | ID=Msa0811800-mRNA-1:three_prime_utr;Parent=Msa0811800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
