AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813130 MtrunA17_Chr5g0430201 92.308 1092 51 2 1 1059 1 1092 0.0 1997
Msa0813130 MtrunA17_Chr3g0105051 55.359 1129 383 27 1 1058 1 1079 0.0 1076
Msa0813130 MtrunA17_Chr3g0113631 36.781 1112 582 27 1 1038 1 1065 1.34e-178 550
Msa0813130 MtrunA17_Chr4g0073021 28.887 1132 569 41 1 1026 1 1002 1.19e-98 335
Msa0813130 MtrunA17_Chr2g0298801 25.910 934 475 38 1 860 1 791 2.66e-37 152
Msa0813130 MtrunA17_Chr1g0197121 28.489 523 266 21 10 466 11 491 9.01e-32 134
Msa0813130 MtrunA17_Chr7g0235711 34.310 239 131 4 568 799 13 232 1.87e-27 112
Msa0813130 MtrunA17_Chr4g0071701 38.750 240 130 7 9 245 9 234 2.33e-27 119
Msa0813130 MtrunA17_Chr4g0071701 29.609 179 97 4 652 830 449 598 1.91e-11 68.6
Msa0813130 MtrunA17_Chr1g0177421 39.674 184 87 4 1 173 1 171 4.63e-26 115
Msa0813130 MtrunA17_Chr1g0177421 30.636 173 114 3 646 814 561 731 3.47e-12 70.9
Msa0813130 MtrunA17_Chr3g0102771 25.000 344 195 16 634 967 470 760 1.77e-11 68.6
Msa0813130 MtrunA17_Chr4g0061371 23.443 273 172 8 598 860 509 754 7.15e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813130 AT1G07200.2 38.626 1121 481 35 1 1058 1 977 0.0 622
Msa0813130 AT2G29970.1 39.321 1119 500 39 1 1058 1 1001 0.0 621
Msa0813130 AT5G57710.1 29.186 1093 544 43 1 1014 1 942 2.38e-83 292
Msa0813130 AT2G40130.1 41.435 432 202 10 1 387 1 426 1.00e-82 288
Msa0813130 AT2G40130.1 30.976 410 242 12 639 1045 526 897 2.19e-45 177
Msa0813130 AT2G40130.2 41.435 432 202 10 1 387 1 426 1.15e-82 288
Msa0813130 AT2G40130.2 30.976 410 242 12 639 1045 529 900 2.20e-45 177
Msa0813130 AT1G07200.1 34.216 491 226 13 575 1058 20 420 6.07e-65 226
Msa0813130 AT4G30350.1 27.295 403 225 12 638 1035 561 900 2.22e-34 143
Msa0813130 AT4G30350.1 29.220 551 262 21 1 469 1 505 1.06e-33 140
Msa0813130 AT3G52490.1 28.077 520 273 24 7 477 7 474 1.64e-30 130
Msa0813130 AT3G52490.1 27.660 188 114 5 640 814 564 742 2.58e-13 75.1
Msa0813130 AT4G29920.1 44.509 173 89 5 1 168 1 171 1.58e-24 111
Msa0813130 AT4G29920.2 44.509 173 89 5 1 168 1 171 1.62e-24 111
Msa0813130 AT5G57130.1 39.691 194 85 6 1 168 1 188 1.49e-22 105
Msa0813130 AT1G74310.2 25.758 198 123 5 654 846 567 745 4.00e-11 67.8
Msa0813130 AT1G74310.1 25.758 198 123 5 654 846 567 745 4.32e-11 67.8

Find 257 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGGGTTTGAGGTTTA+AGG 0.082027 5_3:-43633188 Msa0813130:CDS
GGGAGATTGTTGGAGGTTTA+TGG 0.187391 5_3:-43633043 Msa0813130:CDS
GCACTTGCAGAGACTATATT+TGG 0.207145 5_3:-43630140 Msa0813130:CDS
GCTGGTGTTGTTGTTGGGTT+TGG 0.239040 5_3:-43633133 Msa0813130:CDS
TAGTGATTTCTGCGATAAAA+TGG 0.259979 5_3:-43629445 Msa0813130:CDS
AAAGTTGCCTTGGTTTAAAA+AGG 0.261816 5_3:-43631852 Msa0813130:CDS
TAATTGCATTTGACATCTTT+TGG 0.275201 5_3:+43629746 None:intergenic
TATTCCTGTGACCACAGATT+TGG 0.280241 5_3:-43630549 Msa0813130:CDS
TCTTGAAATTCTGAAGTATC+TGG 0.280417 5_3:+43630485 None:intergenic
AAGCTTGAATGATAAGATAT+TGG 0.293607 5_3:-43630933 Msa0813130:CDS
TATGTTATGACTTGTTTATA+AGG 0.308867 5_3:-43630031 Msa0813130:CDS
AATCTGTGGTCACAGGAATA+AGG 0.309296 5_3:+43630552 None:intergenic
AGGTTTGTTGTGTCGGAGTT+GGG 0.310079 5_3:-43633064 Msa0813130:CDS
TCTTTCGGCATGTAGGAAAA+TGG 0.313701 5_3:+43630764 None:intergenic
TACAGAAAGCATCATCTCTT+TGG 0.321035 5_3:-43630114 Msa0813130:CDS
ATTTGTACTAAAGCTTCTTT+TGG 0.330714 5_3:+43629698 None:intergenic
AAGACGACGTCGTTCCGTTT+TGG 0.335662 5_3:+43633650 None:intergenic
TTGACAACATATTTAGTTGC+AGG 0.339973 5_3:+43629186 None:intergenic
GCTGATTCTGTTGCTTTCAA+TGG 0.340508 5_3:-43630422 Msa0813130:CDS
AGCTTGAATGATAAGATATT+GGG 0.342116 5_3:-43630932 Msa0813130:CDS
TTGGGTGCTGGTGTTGTTGT+TGG 0.345628 5_3:-43633139 Msa0813130:CDS
TTTATTCATAAATGATGGTT+TGG 0.348480 5_3:+43629647 None:intergenic
AGTCATAACATAATGACTTT+TGG 0.349616 5_3:+43630042 None:intergenic
TGTTGAGTCTCTGTAACTTT+CGG 0.349845 5_3:+43630653 None:intergenic
CCACTACAAAATCGCGTTCA+TGG 0.350838 5_3:+43629487 None:intergenic
ATGTGGATGGTGGAGGTGTT+AGG 0.354195 5_3:-43633084 Msa0813130:CDS
GGTGCAGAGTAGTTTGTTGC+AGG 0.357405 5_3:-43629919 Msa0813130:CDS
TATTGGGATTTCAAAAGAAA+TGG 0.359140 5_3:-43630916 Msa0813130:CDS
TGGTGGGAGTGAGGAGAAGA+TGG 0.366082 5_3:-43633203 Msa0813130:CDS
ATTCCTGTGACCACAGATTT+GGG 0.366213 5_3:-43630548 Msa0813130:CDS
TTGTTTCCACCAGGGATGTC+TGG 0.370502 5_3:-43633274 Msa0813130:CDS
ATGGGGTCCTTTGTTCCATT+TGG 0.373854 5_3:-43632028 Msa0813130:CDS
GGAGATTGTAGAGTTTGTTA+AGG 0.374252 5_3:-43633227 Msa0813130:CDS
TGATGCATTTGTAGAGCTAA+TGG 0.375346 5_3:+43631970 None:intergenic
GAGTTGTTACAAAAGGGTTT+AGG 0.375549 5_3:-43633304 Msa0813130:CDS
TGAAGATGGGAGAGAGAGTA+AGG 0.375892 5_3:+43633903 None:intergenic
TTTGTAGAAGAACCTGATCT+TGG 0.378115 5_3:-43629141 Msa0813130:CDS
AGAAGTTGCTGATGCTTTGA+AGG 0.378917 5_3:-43631909 Msa0813130:CDS
ATTTCCCTTCCACGTGAGTC+TGG 0.379518 5_3:+43629876 None:intergenic
ATGATAAACTTACAGTTTGA+TGG 0.380083 5_3:-43632047 Msa0813130:intron
TTCTAGAAAGACAACGGAAT+GGG 0.381515 5_3:+43629965 None:intergenic
ATACAATTTGAAAAGACATT+TGG 0.382874 5_3:-43629354 Msa0813130:CDS
TTCCTAGGACCAGATAGAAT+TGG 0.384589 5_3:-43630182 Msa0813130:CDS
ACTACTTGTAGATACATCTA+AGG 0.385918 5_3:-43629724 Msa0813130:CDS
GGGTGAGGTGGAGAAATGTT+TGG 0.388080 5_3:-43633158 Msa0813130:CDS
GGTGAGGTGGAGAAATGTTT+GGG 0.392012 5_3:-43633157 Msa0813130:CDS
AGGCAACGGCTCTTCTGCTT+TGG 0.392133 5_3:-43629808 Msa0813130:CDS
GGGTCCTTTGTTCCATTTGG+TGG 0.393791 5_3:-43632025 Msa0813130:CDS
GTCGGAGTTGGGGAGATTGT+TGG 0.393992 5_3:-43633053 Msa0813130:CDS
AATTGACGAGCGGAGCTTAC+CGG 0.397022 5_3:+43634021 None:intergenic
TCAGTTGGAAATTGATTATG+AGG 0.397784 5_3:-43629322 Msa0813130:CDS
TGGTGAGAAGGTTTGGTTGA+TGG 0.401479 5_3:-43633023 Msa0813130:CDS
GGGGATGATGTGGATGGTGG+AGG 0.401480 5_3:-43633091 Msa0813130:CDS
TGGATCTCGGCTTCCAAGAC+AGG 0.402999 5_3:-43630094 Msa0813130:CDS
TAGGTTTGTTGTGTCGGAGT+TGG 0.406407 5_3:-43633065 Msa0813130:CDS
AAAGGTTGGCTGGCAGAATC+AGG 0.406653 5_3:-43630297 Msa0813130:CDS
ATTGTAGAGTTTGTTAAGGA+TGG 0.408725 5_3:-43633223 Msa0813130:CDS
TGGGTGCTGGTGTTGTTGTT+GGG 0.412882 5_3:-43633138 Msa0813130:CDS
TAATTTGATGCCGGAGTAGC+AGG 0.416523 5_3:+43631881 None:intergenic
TTTGAGGTTTAAGGAAGTGG+GGG 0.416856 5_3:-43633179 Msa0813130:CDS
CACGCGCCGCTTCGTCTGTT+AGG 0.421696 5_3:+43633998 None:intergenic
AATCTTGAACCGGGTCGAAC+CGG 0.424577 5_3:-43633457 Msa0813130:CDS
ATTGGGGATGATGTGGATGG+TGG 0.424775 5_3:-43633094 Msa0813130:CDS
GAGTGTTGTGTGTGTTGAAA+AGG 0.425380 5_3:-43633248 Msa0813130:CDS
ACAGTTGTGGACTATATTGC+TGG 0.426294 5_3:-43630005 Msa0813130:CDS
GTGAGGAGAAGATGGGTTTG+AGG 0.428354 5_3:-43633195 Msa0813130:CDS
TGAGACAACGATGTCTTGTC+TGG 0.428757 5_3:-43629559 Msa0813130:CDS
ACATATGTTAGTTGCCTAGT+TGG 0.428813 5_3:-43629025 Msa0813130:three_prime_UTR
ATCTGTGGTCACAGGAATAA+GGG 0.430100 5_3:+43630553 None:intergenic
TTGATTGGGGATGATGTGGA+TGG 0.432325 5_3:-43633097 Msa0813130:CDS
CAACGGCTCTTCTGCTTTGG+TGG 0.432884 5_3:-43629805 Msa0813130:CDS
AAACTTCTCTTTGAAAAGGT+TGG 0.434811 5_3:-43630311 Msa0813130:CDS
GGTGAGAAGGTTTGGTTGAT+GGG 0.435502 5_3:-43633022 Msa0813130:CDS
AGCATCATCTCTTTGGATCT+CGG 0.436018 5_3:-43630107 Msa0813130:CDS
GGAAATTGATTATGAGGTAA+TGG 0.436998 5_3:-43629316 Msa0813130:CDS
TTTGTTGAGTTGTTACAAAA+GGG 0.438236 5_3:-43633310 Msa0813130:CDS
TAACAAACTTCTCTTTGAAA+AGG 0.440344 5_3:-43630315 Msa0813130:CDS
ATTTATGAAGGGACAGAGTT+CGG 0.442318 5_3:+43630258 None:intergenic
TAAGGCGGAGATGGTGTGGA+GGG 0.443371 5_3:+43633921 None:intergenic
AGGTTTATGGTGAGAAGGTT+TGG 0.443604 5_3:-43633030 Msa0813130:CDS
GTCTCTGCTCTTCCCTTCAC+CGG 0.446349 5_3:+43630235 None:intergenic
GTGACCACAGATTTGGGATT+GGG 0.446593 5_3:-43630542 Msa0813130:CDS
TCCCTTCACCGGATTTATGA+AGG 0.447835 5_3:+43630246 None:intergenic
TTTGTTGGCAAGTTTGAAGT+AGG 0.449079 5_3:+43630365 None:intergenic
GAGAGAGAGTAAGGCGGAGA+TGG 0.449529 5_3:+43633912 None:intergenic
CACTCATGGCAGCGATCAAA+AGG 0.450688 5_3:-43633720 Msa0813130:CDS
TGTTGGGTTTGGAGAGATTG+AGG 0.451988 5_3:-43633122 Msa0813130:CDS
TTCTCTTTGAAAAGGTTGGC+TGG 0.453729 5_3:-43630307 Msa0813130:CDS
AGGTGTTAGGTTTGTTGTGT+CGG 0.455678 5_3:-43633071 Msa0813130:CDS
TTCCAATTCTATCTGGTCCT+AGG 0.457045 5_3:+43630180 None:intergenic
GGCTCTTCTGCTTTGGTGGA+AGG 0.459570 5_3:-43629801 Msa0813130:CDS
GGGTTTGAGGTTTAAGGAAG+TGG 0.461084 5_3:-43633182 Msa0813130:CDS
GTAGAGTTTGTTAAGGATGG+TGG 0.461992 5_3:-43633220 Msa0813130:CDS
TTACAAAAGGGTTTAGGTGG+TGG 0.462392 5_3:-43633298 Msa0813130:CDS
AAAGATGAATCCTTTGTTGA+TGG 0.463160 5_3:-43633362 Msa0813130:CDS
AGAGCTCGAGTGCTCGGAGG+TGG 0.463898 5_3:+43633815 None:intergenic
AGAGTAAGGCGGAGATGGTG+TGG 0.464917 5_3:+43633917 None:intergenic
TACTATTGGATCATCAAGAA+TGG 0.465460 5_3:+43633594 None:intergenic
TGCATGGTAGAGCAGACATA+TGG 0.466521 5_3:-43630211 Msa0813130:CDS
ATTACTCAACAAAGTTGCCT+TGG 0.467289 5_3:-43631862 Msa0813130:CDS
GTCAAGATTGTGCGGAGGAA+AGG 0.469511 5_3:-43629675 Msa0813130:CDS
TCATCAACCCCTAAAGGAAA+AGG 0.470426 5_3:+43633427 None:intergenic
GATGCATTTGTAGAGCTAAT+GGG 0.470524 5_3:+43631971 None:intergenic
TACTTCAAGTTAATGCTAGC+TGG 0.471041 5_3:+43629108 None:intergenic
TGATAAACTTACAGTTTGAT+GGG 0.475168 5_3:-43632046 Msa0813130:intron
GATTGGGTTGAAAGTGTACT+TGG 0.477070 5_3:-43629243 Msa0813130:CDS
GAAGGTAGATCCTGCTACTC+CGG 0.477431 5_3:-43631891 Msa0813130:CDS
TAGAGTTTGTTAAGGATGGT+GGG 0.477530 5_3:-43633219 Msa0813130:CDS
GAATCAGCTGAAGTAGAGTC+TGG 0.478565 5_3:+43630437 None:intergenic
GGAGTTGGGGAGATTGTTGG+AGG 0.480141 5_3:-43633050 Msa0813130:CDS
GACATATGGTTTGCTTTCCT+AGG 0.481147 5_3:-43630197 Msa0813130:CDS
GGTTTGAGGTTTAAGGAAGT+GGG 0.482318 5_3:-43633181 Msa0813130:CDS
GTTGGAGGTTTATGGTGAGA+AGG 0.484207 5_3:-43633035 Msa0813130:CDS
AAAGTACCATGCAACTCTTT+CGG 0.484537 5_3:+43630749 None:intergenic
TCAAGATTGTGCGGAGGAAA+GGG 0.486021 5_3:-43629674 Msa0813130:CDS
TTTCATTTCTATAACCAAAA+CGG 0.486407 5_3:-43633664 Msa0813130:CDS
GTGGAGAAATGTTTGGGTGC+TGG 0.487355 5_3:-43633151 Msa0813130:CDS
GGCGGTTCTTCTACCGGAGA+TGG 0.487921 5_3:+43633754 None:intergenic
GGCGAATCAACGCCGGTCGC+CGG 0.488522 5_3:-43633692 Msa0813130:CDS
TAGTGGAAAACTCAGACTCC+TGG 0.489063 5_3:-43629470 Msa0813130:CDS
ATCTAACGGCGGTTCGAGCT+CGG 0.489847 5_3:+43633860 None:intergenic
GGAGACGGTGCGAGAATGAC+GGG 0.490924 5_3:+43633836 None:intergenic
CACAGATACTAGCAGCTGCT+TGG 0.491987 5_3:-43629293 Msa0813130:CDS
TGTTAAGGATGGTGGGAGTG+AGG 0.495256 5_3:-43633212 Msa0813130:CDS
TGTGACCACAGATTTGGGAT+TGG 0.498497 5_3:-43630543 Msa0813130:CDS
TAAAGGAAAAGGAGTTAAAC+CGG 0.498731 5_3:+43633438 None:intergenic
GTTTGAGGTTTAAGGAAGTG+GGG 0.500035 5_3:-43633180 Msa0813130:CDS
AAAATGACATGACGACTCCT+TGG 0.500136 5_3:-43630631 Msa0813130:CDS
GGTGGTGGTTTGTTTCCACC+AGG 0.502404 5_3:-43633283 Msa0813130:CDS
AAAGAATGTGTAGTTTCCTC+TGG 0.506537 5_3:-43628930 Msa0813130:three_prime_UTR
TTGAGGTTTAAGGAAGTGGG+GGG 0.506632 5_3:-43633178 Msa0813130:CDS
TGGCATTCGAAAATCGAGTT+CGG 0.508108 5_3:+43630062 None:intergenic
GGTTTGTTGTGTCGGAGTTG+GGG 0.510068 5_3:-43633063 Msa0813130:CDS
TTGTTTGTGCGTGGCTGCGA+CGG 0.510635 5_3:+43633947 None:intergenic
GAGACCGGCGGTTCTTCTAC+CGG 0.510977 5_3:+43633748 None:intergenic
AACCGGGTTGATGATTGAAC+CGG 0.511121 5_3:+43633508 None:intergenic
AATGAAAACTCTCCGGCGAC+CGG 0.511335 5_3:+43633680 None:intergenic
GTAGAAAAGAATCCACCAAA+TGG 0.511594 5_3:+43632013 None:intergenic
GAATTCTCATCAACCCCTAA+AGG 0.511695 5_3:+43633421 None:intergenic
CTAACTGTACCAGTATGTAC+TGG 0.512199 5_3:+43630701 None:intergenic
GCAAGCGCATCAAAATTGAA+TGG 0.512826 5_3:+43629402 None:intergenic
ACTCTGTCCCTTCATAAATC+CGG 0.513671 5_3:-43630254 Msa0813130:CDS
GCGTCACGGAGGGATGAAGA+TGG 0.514891 5_3:+43633889 None:intergenic
CTCATATTGGCCATACGTGA+AGG 0.515556 5_3:+43630602 None:intergenic
TTTGTTGAGTAATTTGATGC+CGG 0.516194 5_3:+43631872 None:intergenic
GGCAGGAGGATCTAGCAATC+TGG 0.516750 5_3:+43630387 None:intergenic
CCTCTAGACGAGGGTGAAGA+AGG 0.516896 5_3:-43629525 Msa0813130:CDS
GAAGGTTTGGTTGATGGGCG+TGG 0.518539 5_3:-43633017 Msa0813130:CDS
TTGGCTCACCCCTTCACGTA+TGG 0.523325 5_3:-43630612 Msa0813130:CDS
GTAAGGCGGAGATGGTGTGG+AGG 0.523351 5_3:+43633920 None:intergenic
TTATCCTCGACTGTCTGTAA+AGG 0.525746 5_3:-43629828 Msa0813130:CDS
GGCGGAGATGGTGTGGAGGG+AGG 0.527614 5_3:+43633924 None:intergenic
AACCGTAAAACTTCAAGTGA+TGG 0.528776 5_3:+43630851 None:intergenic
CCCGTCGTCAAAACCATCTC+CGG 0.529006 5_3:-43633767 Msa0813130:CDS
AGACGAGGGTGAAGAAGGTA+TGG 0.529865 5_3:-43629520 Msa0813130:CDS
GGAGTTAAACCGGTTCGACC+CGG 0.534501 5_3:+43633448 None:intergenic
ATTTGGTTCAGAGTTTCAGT+TGG 0.535616 5_3:-43629337 Msa0813130:CDS
GGAAGGCATAGTCCAAGATC+AGG 0.536013 5_3:+43629129 None:intergenic
TCACCTACTCCAGTACATAC+TGG 0.538163 5_3:-43630710 Msa0813130:CDS
TGGCAAGTTTGAAGTAGGGC+AGG 0.538934 5_3:+43630370 None:intergenic
GGCGGTTCGAGCTCGGCAGA+TGG 0.540656 5_3:+43633867 None:intergenic
TGGAGACGGTGCGAGAATGA+CGG 0.542501 5_3:+43633835 None:intergenic
TGACAACATATTTAGTTGCA+GGG 0.543238 5_3:+43629187 None:intergenic
TTGTTACAAAAGGGTTTAGG+TGG 0.544335 5_3:-43633301 Msa0813130:CDS
TCGGTGGGTAAAGCCTGTCT+TGG 0.544497 5_3:+43630081 None:intergenic
GGTGGGAGTGAGGAGAAGAT+GGG 0.544512 5_3:-43633202 Msa0813130:CDS
GTCAACATCTTCATCAAGCA+AGG 0.545076 5_3:-43630883 Msa0813130:CDS
CCCTTCACCGGATTTATGAA+GGG 0.546292 5_3:+43630247 None:intergenic
CGACGGAGAGCTCGAGTGCT+CGG 0.549248 5_3:+43633809 None:intergenic
GATGGGCGTGGCTGAAACGT+CGG 0.549656 5_3:-43633005 Msa0813130:CDS
TCCCTTCATAAATCCGGTGA+AGG 0.551799 5_3:-43630248 Msa0813130:CDS
CGAGTGCTCGGAGGTGGAGA+CGG 0.552418 5_3:+43633821 None:intergenic
TTATAGAAATGAAAACTCTC+CGG 0.553102 5_3:+43633673 None:intergenic
CATTTGAGTTCATTAAGTGA+TGG 0.554258 5_3:+43630794 None:intergenic
GTTGAAAGTGTACTTGGCAA+AGG 0.555158 5_3:-43629237 Msa0813130:CDS
CAGTTGTGGACTATATTGCT+GGG 0.559986 5_3:-43630004 Msa0813130:CDS
GTGGCTGCGACGGCGTGCGA+CGG 0.561777 5_3:+43633957 None:intergenic
AATCCCAAATCTGTGGTCAC+AGG 0.562874 5_3:+43630545 None:intergenic
ATGCAACTCTTTCGGCATGT+AGG 0.564324 5_3:+43630757 None:intergenic
TTGTTGGCAAGTTTGAAGTA+GGG 0.564946 5_3:+43630366 None:intergenic
ACTCGCTTTACTTCAACCAC+CGG 0.565982 5_3:-43633527 Msa0813130:CDS
GGCAGCGATCAAAAGGTCGC+AGG 0.566370 5_3:-43633713 Msa0813130:CDS
ACCGTAAAACTTCAAGTGAT+GGG 0.569123 5_3:+43630852 None:intergenic
TCATATTGGCCATACGTGAA+GGG 0.570122 5_3:+43630603 None:intergenic
CGTCACGGAGGGATGAAGAT+GGG 0.571169 5_3:+43633890 None:intergenic
CATTCGAAAATCGAGTTCGG+TGG 0.571972 5_3:+43630065 None:intergenic
TTGACGACGGGAGGCGATCG+AGG 0.573042 5_3:+43633779 None:intergenic
TGGAGGACTTGATGTGGCAA+AGG 0.573464 5_3:-43631810 Msa0813130:intron
ATCGCAGAAATCACTAAACC+AGG 0.574026 5_3:+43629452 None:intergenic
GTTTATAAGGAAAACAGTTG+TGG 0.574848 5_3:-43630018 Msa0813130:CDS
AATTTCCAGACTCACGTGGA+AGG 0.576959 5_3:-43629881 Msa0813130:CDS
TTTAAATATGCCTCTAGACG+AGG 0.577902 5_3:-43629535 Msa0813130:CDS
TCGGCAGATGGCGTCACGGA+GGG 0.578202 5_3:+43633879 None:intergenic
GCCATGAGTGAATTCGAGAC+CGG 0.581284 5_3:+43633733 None:intergenic
GCTGAACAATGCTACCAACT+AGG 0.582788 5_3:+43629011 None:intergenic
TTTCTAGAAAGACAACGGAA+TGG 0.582840 5_3:+43629964 None:intergenic
CCTTCTTCACCCTCGTCTAG+AGG 0.588762 5_3:+43629525 None:intergenic
CGAGCGGAGCTTACCGGCGT+CGG 0.590699 5_3:+43634027 None:intergenic
ACACTCAAACCAGACATCCC+TGG 0.591276 5_3:+43633265 None:intergenic
ATTTCCAGACTCACGTGGAA+GGG 0.591431 5_3:-43629880 Msa0813130:CDS
GCATAAACACCCATCAACAA+AGG 0.592078 5_3:+43633352 None:intergenic
CACCGGTTCAATCATCAACC+CGG 0.592321 5_3:-43633510 Msa0813130:CDS
AAGATGAATCCTTTGTTGAT+GGG 0.593312 5_3:-43633361 Msa0813130:CDS
CGAGAATGACGGGAATCTAA+CGG 0.596568 5_3:+43633846 None:intergenic
TCTAGAAAGACAACGGAATG+GGG 0.598499 5_3:+43629966 None:intergenic
GCTGAGGTTATAGCAATGAA+AGG 0.599968 5_3:-43633388 Msa0813130:CDS
CCCTTCATAAATCCGGTGAA+GGG 0.600942 5_3:-43630247 Msa0813130:CDS
TTTCTCTGTAATCTTGAACC+GGG 0.602524 5_3:-43633466 Msa0813130:CDS
ATCTCCGGTAGAAGAACCGC+CGG 0.602781 5_3:-43633752 Msa0813130:CDS
GTGGTGGTTTGTTTCCACCA+GGG 0.603053 5_3:-43633282 Msa0813130:CDS
GAATCCACCAAATGGAACAA+AGG 0.607838 5_3:+43632021 None:intergenic
ATTCGAAAATCGAGTTCGGT+GGG 0.609664 5_3:+43630066 None:intergenic
TGACGACGGGAGGCGATCGA+GGG 0.610312 5_3:+43633780 None:intergenic
GTTGCCGGCGATGCCGACGC+CGG 0.612699 5_3:-43634040 None:intergenic
CGACGGATACTGCGTCGTCG+AGG 0.612977 5_3:+43633974 None:intergenic
TCAAGTTAATGCTAGCTGGA+AGG 0.613209 5_3:+43629112 None:intergenic
GACGGATACTGCGTCGTCGA+GGG 0.613528 5_3:+43633975 None:intergenic
GCCGGTCTCGAATTCACTCA+TGG 0.617007 5_3:-43633734 Msa0813130:CDS
CATATTGGCCATACGTGAAG+GGG 0.617496 5_3:+43630604 None:intergenic
TCGACTGTCTGTAAAGGCAA+CGG 0.619262 5_3:-43629822 Msa0813130:CDS
AGATGGGAGAGAGAGTAAGG+CGG 0.622574 5_3:+43633906 None:intergenic
ATACGTGAAGGGGTGAGCCA+AGG 0.623744 5_3:+43630614 None:intergenic
GGGCGTGGCTGAAACGTCGG+AGG 0.623999 5_3:-43633002 Msa0813130:CDS
GATACTAGTGACTTCAAAGA+GGG 0.625511 5_3:-43629612 Msa0813130:CDS
CAAGTTTGAAGTAGGGCAGG+AGG 0.626522 5_3:+43630373 None:intergenic
GCGATCGAGGGATACGCCGA+CGG 0.627264 5_3:+43633792 None:intergenic
TTGTTGCAGGCAATAAGAAG+AGG 0.627941 5_3:-43629906 Msa0813130:CDS
GTCTGTTAGGAATTGACGAG+CGG 0.630495 5_3:+43634011 None:intergenic
CGAGCACTCGAGCTCTCCGT+CGG 0.635649 5_3:-43633808 Msa0813130:CDS
GGAGGGAGGTTGTTTGTGCG+TGG 0.636703 5_3:+43633938 None:intergenic
GATAAACTTACAGTTTGATG+GGG 0.638827 5_3:-43632045 Msa0813130:intron
CGGGTTGATGATTGAACCGG+TGG 0.640713 5_3:+43633511 None:intergenic
TGATACTAGTGACTTCAAAG+AGG 0.642179 5_3:-43629613 Msa0813130:CDS
GTACAAATGTCAAGATTGTG+CGG 0.643353 5_3:-43629683 Msa0813130:CDS
GGGAAGAGCAGAGACTTGCA+TGG 0.643453 5_3:-43630227 Msa0813130:CDS
GGTCGCAGGCGAATCAACGC+CGG 0.644562 5_3:-43633699 Msa0813130:CDS
TTAAATATGCCTCTAGACGA+GGG 0.653000 5_3:-43629534 Msa0813130:CDS
GTACCAGTATGTACTGGAGT+AGG 0.655032 5_3:+43630707 None:intergenic
GAGCTCGGCAGATGGCGTCA+CGG 0.656874 5_3:+43633875 None:intergenic
GGTAAATTTCCAGACTCACG+TGG 0.662916 5_3:-43629885 Msa0813130:CDS
CGTTCCCAATCCCAAATCTG+TGG 0.663187 5_3:+43630538 None:intergenic
TCAATTCCTAACAGACGAAG+CGG 0.668779 5_3:-43634004 Msa0813130:CDS
CTCGGCAGATGGCGTCACGG+AGG 0.670293 5_3:+43633878 None:intergenic
CTCAAACCAGACATCCCTGG+TGG 0.671231 5_3:+43633268 None:intergenic
TTAACTAGGTATTATACCAG+AGG 0.671439 5_3:+43628914 None:intergenic
CAACATATTTAGTTGCAGGG+TGG 0.677497 5_3:+43629190 None:intergenic
GTTGCCTTTACAGACAGTCG+AGG 0.677550 5_3:+43629824 None:intergenic
ATGAGTGAATTCGAGACCGG+CGG 0.680174 5_3:+43633736 None:intergenic
CGGAGAGCTCGAGTGCTCGG+AGG 0.686678 5_3:+43633812 None:intergenic
AGTTGTGGACTATATTGCTG+GGG 0.699383 5_3:-43630003 Msa0813130:CDS
GTTGTTGATGTGGATACACA+TGG 0.707638 5_3:-43631830 Msa0813130:CDS
TACACATGGAGGACTTGATG+TGG 0.714812 5_3:-43631816 Msa0813130:CDS
GAATTCAAGAAGAATAGCTG+AGG 0.716792 5_3:-43633404 Msa0813130:CDS
CAAATGTCAAGATTGTGCGG+AGG 0.727707 5_3:-43629680 Msa0813130:CDS
TACATGCCGAAAGAGTTGCA+TGG 0.741244 5_3:-43630755 Msa0813130:CDS
GAATGACGGGAATCTAACGG+CGG 0.781926 5_3:+43633849 None:intergenic
GTTGATGTGGATACACATGG+AGG 0.848293 5_3:-43631827 Msa0813130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCTACTTAAATAATTTA+AGG - chr5_3:43631268-43631287 Msa0813130:intron 10.0%
!! AATCTACTTAAATAATTTAA+GGG - chr5_3:43631269-43631288 Msa0813130:intron 10.0%
!! ATACATTTATAAAAACACTT+CGG - chr5_3:43630346-43630365 Msa0813130:CDS 15.0%
!!! ATCATCATGTATTTAATTTA+AGG - chr5_3:43630370-43630389 Msa0813130:CDS 15.0%
!!! ATATACTTTATTTTCGTATA+CGG - chr5_3:43630800-43630819 Msa0813130:CDS 15.0%
!! AGTAATTATAGTCATTTAAT+TGG - chr5_3:43631361-43631380 Msa0813130:intron 15.0%
!!! TTGATTCTAAAATCAATAAT+TGG + chr5_3:43631451-43631470 None:intergenic 15.0%
!!! TTTCTTTTATTCATAAATGA+TGG + chr5_3:43633314-43633333 None:intergenic 15.0%
!! TTTCATTTCTATAACCAAAA+CGG - chr5_3:43629289-43629308 Msa0813130:CDS 20.0%
!! CATATTCATTTATTTGTCTA+TGG + chr5_3:43630424-43630443 None:intergenic 20.0%
!!! AACAGACTAATGAATTTTTT+GGG + chr5_3:43630755-43630774 None:intergenic 20.0%
!! GTTGTTATATACATACATAT+TGG - chr5_3:43630772-43630791 Msa0813130:CDS 20.0%
!!! AGACAATAATATCTAAGATT+TGG + chr5_3:43631182-43631201 None:intergenic 20.0%
!! CAAATTACTTTAACAAGTAT+AGG + chr5_3:43631314-43631333 None:intergenic 20.0%
!!! CTATACTTGTTAAAGTAATT+TGG - chr5_3:43631312-43631331 Msa0813130:intron 20.0%
!!! AGAAACATTATGCTTTTATT+TGG + chr5_3:43631593-43631612 None:intergenic 20.0%
!!! ACTAGCTTTAAATTTTAGAA+AGG + chr5_3:43631726-43631745 None:intergenic 20.0%
!! TGTTAACCTATAAAATGATT+TGG - chr5_3:43631908-43631927 Msa0813130:CDS 20.0%
!!! TCTATTGAATCAAATTTTGT+TGG + chr5_3:43632606-43632625 None:intergenic 20.0%
!!! TATGTTATGACTTGTTTATA+AGG - chr5_3:43632922-43632941 Msa0813130:intron 20.0%
!! TTTATTCATAAATGATGGTT+TGG + chr5_3:43633309-43633328 None:intergenic 20.0%
!! ATACAATTTGAAAAGACATT+TGG - chr5_3:43633599-43633618 Msa0813130:CDS 20.0%
! TTATAGAAATGAAAACTCTC+CGG + chr5_3:43629283-43629302 None:intergenic 25.0%
!! TTTATGCAAAAGATGCTTTT+AGG - chr5_3:43629617-43629636 Msa0813130:CDS 25.0%
!!! TTTTGTTGAGTTGTTACAAA+AGG - chr5_3:43629642-43629661 Msa0813130:CDS 25.0%
!! TTTGTTGAGTTGTTACAAAA+GGG - chr5_3:43629643-43629662 Msa0813130:CDS 25.0%
! AAATGAATATGATTGTGACT+TGG - chr5_3:43630433-43630452 Msa0813130:CDS 25.0%
!!! TTAATTTGTGCCAAATGTTA+TGG - chr5_3:43630465-43630484 Msa0813130:CDS 25.0%
!! TAATTTGTGCCAAATGTTAT+GGG - chr5_3:43630466-43630485 Msa0813130:CDS 25.0%
!!! TTATGGGTTTTTGCTATTTT+TGG - chr5_3:43630482-43630501 Msa0813130:CDS 25.0%
! AAAAAGTAAAAACGTAGTAG+AGG + chr5_3:43630636-43630655 None:intergenic 25.0%
!!! CAACAGACTAATGAATTTTT+TGG + chr5_3:43630756-43630775 None:intergenic 25.0%
! ATGATAAACTTACAGTTTGA+TGG - chr5_3:43630906-43630925 Msa0813130:CDS 25.0%
! TGATAAACTTACAGTTTGAT+GGG - chr5_3:43630907-43630926 Msa0813130:CDS 25.0%
! GTCATTTAATTGGAAATCAA+TGG - chr5_3:43631371-43631390 Msa0813130:intron 25.0%
! TTAAAGTGAATGAATCACTT+AGG + chr5_3:43631494-43631513 None:intergenic 25.0%
!! AGGTTTTTGTTAACCTTATT+TGG + chr5_3:43631522-43631541 None:intergenic 25.0%
! ACCTTTCCAATCAATAAAAA+AGG - chr5_3:43631538-43631557 Msa0813130:intron 25.0%
!!! ACCTTTTTTATTGATTGGAA+AGG + chr5_3:43631542-43631561 None:intergenic 25.0%
! TTTCCAATCAATAAAAAAGG+TGG - chr5_3:43631541-43631560 Msa0813130:intron 25.0%
!!! TTTCCACCTTTTTTATTGAT+TGG + chr5_3:43631547-43631566 None:intergenic 25.0%
! TCAACAAAAGAATATTGACA+GGG + chr5_3:43631630-43631649 None:intergenic 25.0%
! AAACATGTGCTATCAAATAA+TGG - chr5_3:43631688-43631707 Msa0813130:intron 25.0%
! AACATGTGCTATCAAATAAT+GGG - chr5_3:43631689-43631708 Msa0813130:intron 25.0%
!!! ATAGTGACCTATATTAGTTT+TGG - chr5_3:43631769-43631788 Msa0813130:intron 25.0%
! GGTATAACCAAAACTAATAT+AGG + chr5_3:43631779-43631798 None:intergenic 25.0%
!!! ACTTTTTTGCTTATCAGTAT+TGG - chr5_3:43631824-43631843 Msa0813130:CDS 25.0%
!!! CTTTTTTGCTTATCAGTATT+GGG - chr5_3:43631825-43631844 Msa0813130:CDS 25.0%
!! AGAACTCCAAATCATTTTAT+AGG + chr5_3:43631917-43631936 None:intergenic 25.0%
! ACTCAAGAAACAAAATCTTA+CGG + chr5_3:43631957-43631976 None:intergenic 25.0%
! AAGCTTGAATGATAAGATAT+TGG - chr5_3:43632020-43632039 Msa0813130:CDS 25.0%
! AGCTTGAATGATAAGATATT+GGG - chr5_3:43632021-43632040 Msa0813130:CDS 25.0%
! TATTGGGATTTCAAAAGAAA+TGG - chr5_3:43632037-43632056 Msa0813130:intron 25.0%
!! TAACAAACTTCTCTTTGAAA+AGG - chr5_3:43632638-43632657 Msa0813130:intron 25.0%
!!! TTCTTTTTTCCAATTCTATC+TGG + chr5_3:43632783-43632802 None:intergenic 25.0%
! TGGAAAAAAGAAAATTGCTT+CGG - chr5_3:43632791-43632810 Msa0813130:intron 25.0%
!! AGTCATAACATAATGACTTT+TGG + chr5_3:43632914-43632933 None:intergenic 25.0%
!!! TACATTTTCTAGAAAGACAA+CGG + chr5_3:43632997-43633016 None:intergenic 25.0%
!! TAATTGCATTTGACATCTTT+TGG + chr5_3:43633210-43633229 None:intergenic 25.0%
!! ATTTGTACTAAAGCTTCTTT+TGG + chr5_3:43633258-43633277 None:intergenic 25.0%
TACTATTGGATCATCAAGAA+TGG + chr5_3:43629362-43629381 None:intergenic 30.0%
GAAAAAACACGGTTTACTAT+TGG + chr5_3:43629376-43629395 None:intergenic 30.0%
TCAAGATTACAGAGAAAAAC+CGG + chr5_3:43629484-43629503 None:intergenic 30.0%
! TTTTCTCTGTAATCTTGAAC+CGG - chr5_3:43629486-43629505 Msa0813130:CDS 30.0%
TAAAGGAAAAGGAGTTAAAC+CGG + chr5_3:43629518-43629537 None:intergenic 30.0%
! GTTTAACTCCTTTTCCTTTA+GGG - chr5_3:43629518-43629537 Msa0813130:CDS 30.0%
! TTTAACTCCTTTTCCTTTAG+GGG - chr5_3:43629519-43629538 Msa0813130:CDS 30.0%
AAAGATGAATCCTTTGTTGA+TGG - chr5_3:43629591-43629610 Msa0813130:CDS 30.0%
AAGATGAATCCTTTGTTGAT+GGG - chr5_3:43629592-43629611 Msa0813130:CDS 30.0%
!! ATTGTAGAGTTTGTTAAGGA+TGG - chr5_3:43629730-43629749 Msa0813130:CDS 30.0%
TGAAGTCTATAGATGTCTAT+TGG - chr5_3:43630230-43630249 Msa0813130:CDS 30.0%
! AATTTAAGGCAATGCATGTT+TGG - chr5_3:43630384-43630403 Msa0813130:CDS 30.0%
TAGCAAAAACCCATAACATT+TGG + chr5_3:43630478-43630497 None:intergenic 30.0%
!!! CTTTTTTTAGAAGGGTTGTT+TGG - chr5_3:43630551-43630570 Msa0813130:CDS 30.0%
TAGAGGATTGAATTGAGTAA+GGG + chr5_3:43630619-43630638 None:intergenic 30.0%
! CAAAGTTGTGATTTTAAGCA+TGG - chr5_3:43630710-43630729 Msa0813130:CDS 30.0%
GATAAACTTACAGTTTGATG+GGG - chr5_3:43630908-43630927 Msa0813130:CDS 30.0%
TTTGTTGAGTAATTTGATGC+CGG + chr5_3:43631084-43631103 None:intergenic 30.0%
AAAGTTGCCTTGGTTTAAAA+AGG - chr5_3:43631101-43631120 Msa0813130:intron 30.0%
! TCAACAACCTTTTTAAACCA+AGG + chr5_3:43631111-43631130 None:intergenic 30.0%
GTTTAAAAAGGTTGTTGATG+TGG - chr5_3:43631113-43631132 Msa0813130:intron 30.0%
ATTATTGTCTTGTGCATACT+TGG - chr5_3:43631192-43631211 Msa0813130:intron 30.0%
TAAAGTGACTTCTCACTTTA+GGG + chr5_3:43631341-43631360 None:intergenic 30.0%
TTAAAGTGACTTCTCACTTT+AGG + chr5_3:43631342-43631361 None:intergenic 30.0%
! CACTTTAAAGAAGCCAAATA+AGG - chr5_3:43631506-43631525 Msa0813130:intron 30.0%
CTCAACAAAAGAATATTGAC+AGG + chr5_3:43631631-43631650 None:intergenic 30.0%
! ATATTCTTTTGTTGAGCCTA+TGG - chr5_3:43631635-43631654 Msa0813130:intron 30.0%
! TATTCTTTTGTTGAGCCTAT+GGG - chr5_3:43631636-43631655 Msa0813130:intron 30.0%
AATATAGGTCACTATACTAG+TGG + chr5_3:43631764-43631783 None:intergenic 30.0%
! CATTTGAGTTCATTAAGTGA+TGG + chr5_3:43632162-43632181 None:intergenic 30.0%
!!! GATGAAGATGATTTGTTTTC+TGG + chr5_3:43632381-43632400 None:intergenic 30.0%
!! TCTTGAAATTCTGAAGTATC+TGG + chr5_3:43632471-43632490 None:intergenic 30.0%
! AAACTTCTCTTTGAAAAGGT+TGG - chr5_3:43632642-43632661 Msa0813130:intron 30.0%
GTTTATAAGGAAAACAGTTG+TGG - chr5_3:43632935-43632954 Msa0813130:intron 30.0%
!! TGTAGATAAAGCTGATTTTC+TGG - chr5_3:43633013-43633032 Msa0813130:CDS 30.0%
ACTACTTGTAGATACATCTA+AGG - chr5_3:43633229-43633248 Msa0813130:CDS 30.0%
TAGTGATTTCTGCGATAAAA+TGG - chr5_3:43633508-43633527 Msa0813130:CDS 30.0%
CGATAAAATGGATGAAAAAG+TGG - chr5_3:43633520-43633539 Msa0813130:CDS 30.0%
TCAGTTGGAAATTGATTATG+AGG - chr5_3:43633631-43633650 Msa0813130:CDS 30.0%
GGAAATTGATTATGAGGTAA+TGG - chr5_3:43633637-43633656 Msa0813130:CDS 30.0%
TGACAACATATTTAGTTGCA+GGG + chr5_3:43633769-43633788 None:intergenic 30.0%
TTGACAACATATTTAGTTGC+AGG + chr5_3:43633770-43633789 None:intergenic 30.0%
! AACCAGCTTCTGAAAAAACA+CGG + chr5_3:43629387-43629406 None:intergenic 35.0%
TTTCTCTGTAATCTTGAACC+GGG - chr5_3:43629487-43629506 Msa0813130:CDS 35.0%
! GGTTTAACTCCTTTTCCTTT+AGG - chr5_3:43629517-43629536 Msa0813130:CDS 35.0%
GAATTCAAGAAGAATAGCTG+AGG - chr5_3:43629549-43629568 Msa0813130:CDS 35.0%
GAGTTGTTACAAAAGGGTTT+AGG - chr5_3:43629649-43629668 Msa0813130:CDS 35.0%
TTGTTACAAAAGGGTTTAGG+TGG - chr5_3:43629652-43629671 Msa0813130:CDS 35.0%
!! GGAGATTGTAGAGTTTGTTA+AGG - chr5_3:43629726-43629745 Msa0813130:CDS 35.0%
!! TAGAGTTTGTTAAGGATGGT+GGG - chr5_3:43629734-43629753 Msa0813130:CDS 35.0%
!!! GAGAGATTGAGGTTTTGATT+GGG - chr5_3:43629842-43629861 Msa0813130:CDS 35.0%
!!! AGAGATTGAGGTTTTGATTG+GGG - chr5_3:43629843-43629862 Msa0813130:CDS 35.0%
! AGGCTTATTCGAAGTTTTTG+AGG - chr5_3:43629971-43629990 Msa0813130:CDS 35.0%
!!! GAAGTTTTTGAGGTTGTTTC+CGG - chr5_3:43629981-43630000 Msa0813130:CDS 35.0%
!!! AAGTTTTTGAGGTTGTTTCC+GGG - chr5_3:43629982-43630001 Msa0813130:CDS 35.0%
AAAGGATTGGGATTTGCATT+TGG - chr5_3:43630011-43630030 Msa0813130:CDS 35.0%
CTTCATAGATAGAACTAACC+TGG + chr5_3:43630085-43630104 None:intergenic 35.0%
AGTTCTATCTATGAAGCCAT+AGG - chr5_3:43630089-43630108 Msa0813130:CDS 35.0%
AGACTTCAATTCAATGTGTC+TGG + chr5_3:43630218-43630237 None:intergenic 35.0%
! CTATAGATGTCTATTGGTTG+CGG - chr5_3:43630236-43630255 Msa0813130:CDS 35.0%
! GTTTGTACTTGTCCTGATTT+TGG - chr5_3:43630258-43630277 Msa0813130:CDS 35.0%
TGTACACTTCAACCAAAATC+AGG + chr5_3:43630273-43630292 None:intergenic 35.0%
TTTGGTTGAAGTGTACACAT+AGG - chr5_3:43630276-43630295 Msa0813130:CDS 35.0%
TGTGTATATGAACCTACAAG+AGG + chr5_3:43630313-43630332 None:intergenic 35.0%
!!! TCCCTCTTGCTTTTTTTAGA+AGG - chr5_3:43630542-43630561 Msa0813130:CDS 35.0%
! CCCTTCTAAAAAAAGCAAGA+GGG + chr5_3:43630546-43630565 None:intergenic 35.0%
!!! CCCTCTTGCTTTTTTTAGAA+GGG - chr5_3:43630543-43630562 Msa0813130:CDS 35.0%
! ACCCTTCTAAAAAAAGCAAG+AGG + chr5_3:43630547-43630566 None:intergenic 35.0%
GTAGAGGATTGAATTGAGTA+AGG + chr5_3:43630620-43630639 None:intergenic 35.0%
TTAGTCCTTGTAATACTTGC+TGG - chr5_3:43630681-43630700 Msa0813130:CDS 35.0%
ATGGAACTGTGAGATACAAT+TGG + chr5_3:43630882-43630901 None:intergenic 35.0%
CTGTAAGTTTATCATGAGCA+TGG + chr5_3:43630901-43630920 None:intergenic 35.0%
GTAGAAAAGAATCCACCAAA+TGG + chr5_3:43630943-43630962 None:intergenic 35.0%
GATGCATTTGTAGAGCTAAT+GGG + chr5_3:43630985-43631004 None:intergenic 35.0%
TGATGCATTTGTAGAGCTAA+TGG + chr5_3:43630986-43631005 None:intergenic 35.0%
ATTACTCAACAAAGTTGCCT+TGG - chr5_3:43631091-43631110 Msa0813130:intron 35.0%
TACACATAATGTGTGCAACA+TGG - chr5_3:43631227-43631246 Msa0813130:intron 35.0%
AGTGAATGAATCACTTAGGA+GGG + chr5_3:43631490-43631509 None:intergenic 35.0%
AAGTGAATGAATCACTTAGG+AGG + chr5_3:43631491-43631510 None:intergenic 35.0%
!! TCAAATAATGGGCATGGATT+AGG - chr5_3:43631700-43631719 Msa0813130:intron 35.0%
TCAGCAACTGCAGATTTATA+TGG + chr5_3:43631800-43631819 None:intergenic 35.0%
ATCTTTATAACTCCATCTGC+AGG - chr5_3:43631981-43632000 Msa0813130:CDS 35.0%
! TCCCATCACTTGAAGTTTTA+CGG - chr5_3:43632100-43632119 Msa0813130:intron 35.0%
ACCGTAAAACTTCAAGTGAT+GGG + chr5_3:43632104-43632123 None:intergenic 35.0%
AACCGTAAAACTTCAAGTGA+TGG + chr5_3:43632105-43632124 None:intergenic 35.0%
! TCACTTGAAGTTTTACGGTT+TGG - chr5_3:43632105-43632124 Msa0813130:intron 35.0%
! AAAGTACCATGCAACTCTTT+CGG + chr5_3:43632207-43632226 None:intergenic 35.0%
!! GTAGGTGATAACTGTTTTGA+TGG + chr5_3:43632231-43632250 None:intergenic 35.0%
TGTTGAGTCTCTGTAACTTT+CGG + chr5_3:43632303-43632322 None:intergenic 35.0%
! TTGTTGGCAAGTTTGAAGTA+GGG + chr5_3:43632590-43632609 None:intergenic 35.0%
! TTTGTTGGCAAGTTTGAAGT+AGG + chr5_3:43632591-43632610 None:intergenic 35.0%
ATTTATGAAGGGACAGAGTT+CGG + chr5_3:43632698-43632717 None:intergenic 35.0%
!! TACAGAAAGCATCATCTCTT+TGG - chr5_3:43632839-43632858 Msa0813130:intron 35.0%
! TTCTAGAAAGACAACGGAAT+GGG + chr5_3:43632991-43633010 None:intergenic 35.0%
! TTTCTAGAAAGACAACGGAA+TGG + chr5_3:43632992-43633011 None:intergenic 35.0%
GTACAAATGTCAAGATTGTG+CGG - chr5_3:43633270-43633289 Msa0813130:CDS 35.0%
TGATACTAGTGACTTCAAAG+AGG - chr5_3:43633340-43633359 Msa0813130:CDS 35.0%
GATACTAGTGACTTCAAAGA+GGG - chr5_3:43633341-43633360 Msa0813130:CDS 35.0%
! ATTTGGTTCAGAGTTTCAGT+TGG - chr5_3:43633616-43633635 Msa0813130:CDS 35.0%
TTTGTAGAAGAACCTGATCT+TGG - chr5_3:43633812-43633831 Msa0813130:CDS 35.0%
! TACTTCAAGTTAATGCTAGC+TGG + chr5_3:43633848-43633867 None:intergenic 35.0%
ACATATGTTAGTTGCCTAGT+TGG - chr5_3:43633928-43633947 Msa0813130:CDS 35.0%
AAAGAATGTGTAGTTTCCTC+TGG - chr5_3:43634023-43634042 Msa0813130:CDS 35.0%
TCAATTCCTAACAGACGAAG+CGG - chr5_3:43628949-43628968 Msa0813130:three_prime_UTR 40.0%
!!! AACCGTGTTTTTTCAGAAGC+TGG - chr5_3:43629382-43629401 Msa0813130:CDS 40.0%
AGATTACAGAGAAAAACCGG+CGG + chr5_3:43629481-43629500 None:intergenic 40.0%
TCATCAACCCCTAAAGGAAA+AGG + chr5_3:43629529-43629548 None:intergenic 40.0%
GAATTCTCATCAACCCCTAA+AGG + chr5_3:43629535-43629554 None:intergenic 40.0%
GCTGAGGTTATAGCAATGAA+AGG - chr5_3:43629565-43629584 Msa0813130:CDS 40.0%
GCATAAACACCCATCAACAA+AGG + chr5_3:43629604-43629623 None:intergenic 40.0%
TTACAAAAGGGTTTAGGTGG+TGG - chr5_3:43629655-43629674 Msa0813130:CDS 40.0%
! GAGTGTTGTGTGTGTTGAAA+AGG - chr5_3:43629705-43629724 Msa0813130:CDS 40.0%
!! GTAGAGTTTGTTAAGGATGG+TGG - chr5_3:43629733-43629752 Msa0813130:CDS 40.0%
! GAAGATGGGTTTGAGGTTTA+AGG - chr5_3:43629765-43629784 Msa0813130:CDS 40.0%
! GGTTTGAGGTTTAAGGAAGT+GGG - chr5_3:43629772-43629791 Msa0813130:CDS 40.0%
! GTTTGAGGTTTAAGGAAGTG+GGG - chr5_3:43629773-43629792 Msa0813130:CDS 40.0%
! TTTGAGGTTTAAGGAAGTGG+GGG - chr5_3:43629774-43629793 Msa0813130:CDS 40.0%
!! GGAGAGATTGAGGTTTTGAT+TGG - chr5_3:43629841-43629860 Msa0813130:CDS 40.0%
!! AGGTGTTAGGTTTGTTGTGT+CGG - chr5_3:43629882-43629901 Msa0813130:CDS 40.0%
AGGTTTATGGTGAGAAGGTT+TGG - chr5_3:43629923-43629942 Msa0813130:CDS 40.0%
AAGGACTCTACTCTAAATCC+AGG - chr5_3:43630064-43630083 Msa0813130:CDS 40.0%
TATCTATGAAGCCATAGGCT+CGG - chr5_3:43630094-43630113 Msa0813130:CDS 40.0%
TGGTGTCTAACATGTGTACA+TGG + chr5_3:43630198-43630217 None:intergenic 40.0%
TGTACACATAGGTACTATGC+AGG - chr5_3:43630287-43630306 Msa0813130:CDS 40.0%
AAGGCAATGCATGTTTGGAA+TGG - chr5_3:43630389-43630408 Msa0813130:CDS 40.0%
GCAAGAGGGAAAGATTAACA+AGG + chr5_3:43630532-43630551 None:intergenic 40.0%
CAATGCCAGCAAGTATTACA+AGG + chr5_3:43630689-43630708 None:intergenic 40.0%
GAATCCACCAAATGGAACAA+AGG + chr5_3:43630935-43630954 None:intergenic 40.0%
! CTAATGGGACTTTTGCTTTC+AGG + chr5_3:43630970-43630989 None:intergenic 40.0%
AGAAGTTGCTGATGCTTTGA+AGG - chr5_3:43631044-43631063 Msa0813130:intron 40.0%
GTTGTTGATGTGGATACACA+TGG - chr5_3:43631123-43631142 Msa0813130:intron 40.0%
ACATAATGTGTGCAACATGG+TGG - chr5_3:43631230-43631249 Msa0813130:intron 40.0%
CATAATGTGTGCAACATGGT+GGG - chr5_3:43631231-43631250 Msa0813130:intron 40.0%
ATAATGTGTGCAACATGGTG+GGG - chr5_3:43631232-43631251 Msa0813130:intron 40.0%
TTTGATCATCGTAAGCCCAT+AGG + chr5_3:43631654-43631673 None:intergenic 40.0%
!! GTGCTATCAAATAATGGGCA+TGG - chr5_3:43631694-43631713 Msa0813130:intron 40.0%
TTTCTTCATTTGCCTGCAGA+TGG + chr5_3:43631996-43632015 None:intergenic 40.0%
GTCAACATCTTCATCAAGCA+AGG - chr5_3:43632070-43632089 Msa0813130:intron 40.0%
!!! GAAGTTTTACGGTTTGGTTC+AGG - chr5_3:43632111-43632130 Msa0813130:intron 40.0%
TCTTTCGGCATGTAGGAAAA+TGG + chr5_3:43632192-43632211 None:intergenic 40.0%
CTAACTGTACCAGTATGTAC+TGG + chr5_3:43632255-43632274 None:intergenic 40.0%
AAAATGACATGACGACTCCT+TGG - chr5_3:43632322-43632341 Msa0813130:intron 40.0%
TCATATTGGCCATACGTGAA+GGG + chr5_3:43632353-43632372 None:intergenic 40.0%
!! GTTTTCTGGTGCACTCATAT+TGG + chr5_3:43632367-43632386 None:intergenic 40.0%
ATCTGTGGTCACAGGAATAA+GGG + chr5_3:43632403-43632422 None:intergenic 40.0%
AATCTGTGGTCACAGGAATA+AGG + chr5_3:43632404-43632423 None:intergenic 40.0%
TATTCCTGTGACCACAGATT+TGG - chr5_3:43632404-43632423 Msa0813130:intron 40.0%
ATTCCTGTGACCACAGATTT+GGG - chr5_3:43632405-43632424 Msa0813130:intron 40.0%
!! GCTGATTCTGTTGCTTTCAA+TGG - chr5_3:43632531-43632550 Msa0813130:intron 40.0%
! TTCTCTTTGAAAAGGTTGGC+TGG - chr5_3:43632646-43632665 Msa0813130:intron 40.0%
ACTCTGTCCCTTCATAAATC+CGG - chr5_3:43632699-43632718 Msa0813130:intron 40.0%
!! GACATATGGTTTGCTTTCCT+AGG - chr5_3:43632756-43632775 Msa0813130:intron 40.0%
TTCCTAGGACCAGATAGAAT+TGG - chr5_3:43632771-43632790 Msa0813130:intron 40.0%
TTCCAATTCTATCTGGTCCT+AGG + chr5_3:43632776-43632795 None:intergenic 40.0%
GCACTTGCAGAGACTATATT+TGG - chr5_3:43632813-43632832 Msa0813130:intron 40.0%
AGCATCATCTCTTTGGATCT+CGG - chr5_3:43632846-43632865 Msa0813130:intron 40.0%
ATTCGAAAATCGAGTTCGGT+GGG + chr5_3:43632890-43632909 None:intergenic 40.0%
TGGCATTCGAAAATCGAGTT+CGG + chr5_3:43632894-43632913 None:intergenic 40.0%
! ACAGTTGTGGACTATATTGC+TGG - chr5_3:43632948-43632967 Msa0813130:intron 40.0%
! CAGTTGTGGACTATATTGCT+GGG - chr5_3:43632949-43632968 Msa0813130:intron 40.0%
! AGTTGTGGACTATATTGCTG+GGG - chr5_3:43632950-43632969 Msa0813130:intron 40.0%
TCTAGAAAGACAACGGAATG+GGG + chr5_3:43632990-43633009 None:intergenic 40.0%
TTGTTGCAGGCAATAAGAAG+AGG - chr5_3:43633047-43633066 Msa0813130:CDS 40.0%
TTATCCTCGACTGTCTGTAA+AGG - chr5_3:43633125-43633144 Msa0813130:CDS 40.0%
AGCAAGCAAGATGCAAAAAC+AGG - chr5_3:43633367-43633386 Msa0813130:CDS 40.0%
ATCGCAGAAATCACTAAACC+AGG + chr5_3:43633504-43633523 None:intergenic 40.0%
GCAAGCGCATCAAAATTGAA+TGG + chr5_3:43633554-43633573 None:intergenic 40.0%
AGCAGACAAGAAAAATGCAG+TGG - chr5_3:43633685-43633704 Msa0813130:CDS 40.0%
AGACAAGAAAAATGCAGTGG+AGG - chr5_3:43633688-43633707 Msa0813130:CDS 40.0%
AGAAAAATGCAGTGGAGGAT+TGG - chr5_3:43633693-43633712 Msa0813130:CDS 40.0%
GAAAAATGCAGTGGAGGATT+GGG - chr5_3:43633694-43633713 Msa0813130:CDS 40.0%
!! GATTGGGTTGAAAGTGTACT+TGG - chr5_3:43633710-43633729 Msa0813130:CDS 40.0%
! GTTGAAAGTGTACTTGGCAA+AGG - chr5_3:43633716-43633735 Msa0813130:CDS 40.0%
CAACATATTTAGTTGCAGGG+TGG + chr5_3:43633766-43633785 None:intergenic 40.0%
TCAAGTTAATGCTAGCTGGA+AGG + chr5_3:43633844-43633863 None:intergenic 40.0%
GTCTGTTAGGAATTGACGAG+CGG + chr5_3:43628945-43628964 None:intergenic 45.0%
TGAAGATGGGAGAGAGAGTA+AGG + chr5_3:43629053-43629072 None:intergenic 45.0%
! CGAGAATGACGGGAATCTAA+CGG + chr5_3:43629110-43629129 None:intergenic 45.0%
ACTCGCTTTACTTCAACCAC+CGG - chr5_3:43629426-43629445 Msa0813130:CDS 45.0%
!! AACCGGGTTGATGATTGAAC+CGG + chr5_3:43629448-43629467 None:intergenic 45.0%
! GGGTTTGAGGTTTAAGGAAG+TGG - chr5_3:43629771-43629790 Msa0813130:CDS 45.0%
TTGAGGTTTAAGGAAGTGGG+GGG - chr5_3:43629775-43629794 Msa0813130:CDS 45.0%
GGTGAGGTGGAGAAATGTTT+GGG - chr5_3:43629796-43629815 Msa0813130:CDS 45.0%
TGTTGGGTTTGGAGAGATTG+AGG - chr5_3:43629831-43629850 Msa0813130:CDS 45.0%
!!! GGTTTTGATTGGGGATGATG+TGG - chr5_3:43629852-43629871 Msa0813130:CDS 45.0%
TTGATTGGGGATGATGTGGA+TGG - chr5_3:43629856-43629875 Msa0813130:CDS 45.0%
!! TAGGTTTGTTGTGTCGGAGT+TGG - chr5_3:43629888-43629907 Msa0813130:CDS 45.0%
!! AGGTTTGTTGTGTCGGAGTT+GGG - chr5_3:43629889-43629908 Msa0813130:CDS 45.0%
GGGAGATTGTTGGAGGTTTA+TGG - chr5_3:43629910-43629929 Msa0813130:CDS 45.0%
GTTGGAGGTTTATGGTGAGA+AGG - chr5_3:43629918-43629937 Msa0813130:CDS 45.0%
! TGGTGAGAAGGTTTGGTTGA+TGG - chr5_3:43629930-43629949 Msa0813130:CDS 45.0%
! GGTGAGAAGGTTTGGTTGAT+GGG - chr5_3:43629931-43629950 Msa0813130:CDS 45.0%
GACATCTGCTACTCCTTCAA+TGG - chr5_3:43630041-43630060 Msa0813130:CDS 45.0%
TCTGCTACTCCTTCAATGGA+AGG - chr5_3:43630045-43630064 Msa0813130:CDS 45.0%
GAGTAGAGTCCTTCCATTGA+AGG + chr5_3:43630057-43630076 None:intergenic 45.0%
CTACGTGTTAGTGTTGTGTC+TGG + chr5_3:43630123-43630142 None:intergenic 45.0%
GAAGGGTTGTTTGGTAGAAG+TGG - chr5_3:43630560-43630579 Msa0813130:CDS 45.0%
ATGGGGTCCTTTGTTCCATT+TGG - chr5_3:43630925-43630944 Msa0813130:CDS 45.0%
! ATGGGACTTTTGCTTTCAGG+AGG + chr5_3:43630967-43630986 None:intergenic 45.0%
TAATTTGATGCCGGAGTAGC+AGG + chr5_3:43631075-43631094 None:intergenic 45.0%
GTTGATGTGGATACACATGG+AGG - chr5_3:43631126-43631145 Msa0813130:intron 45.0%
TACACATGGAGGACTTGATG+TGG - chr5_3:43631137-43631156 Msa0813130:intron 45.0%
TAATGTGTGCAACATGGTGG+GGG - chr5_3:43631233-43631252 Msa0813130:intron 45.0%
ATGCAACTCTTTCGGCATGT+AGG + chr5_3:43632199-43632218 None:intergenic 45.0%
TACATGCCGAAAGAGTTGCA+TGG - chr5_3:43632198-43632217 Msa0813130:intron 45.0%
TCACCTACTCCAGTACATAC+TGG - chr5_3:43632243-43632262 Msa0813130:intron 45.0%
GTACCAGTATGTACTGGAGT+AGG + chr5_3:43632249-43632268 None:intergenic 45.0%
CATATTGGCCATACGTGAAG+GGG + chr5_3:43632352-43632371 None:intergenic 45.0%
CTCATATTGGCCATACGTGA+AGG + chr5_3:43632354-43632373 None:intergenic 45.0%
AATCCCAAATCTGTGGTCAC+AGG + chr5_3:43632411-43632430 None:intergenic 45.0%
! TGTGACCACAGATTTGGGAT+TGG - chr5_3:43632410-43632429 Msa0813130:intron 45.0%
! GTGACCACAGATTTGGGATT+GGG - chr5_3:43632411-43632430 Msa0813130:intron 45.0%
GAATCAGCTGAAGTAGAGTC+TGG + chr5_3:43632519-43632538 None:intergenic 45.0%
TCCCTTCATAAATCCGGTGA+AGG - chr5_3:43632705-43632724 Msa0813130:intron 45.0%
CCCTTCACCGGATTTATGAA+GGG + chr5_3:43632709-43632728 None:intergenic 45.0%
CCCTTCATAAATCCGGTGAA+GGG - chr5_3:43632706-43632725 Msa0813130:intron 45.0%
TCCCTTCACCGGATTTATGA+AGG + chr5_3:43632710-43632729 None:intergenic 45.0%
TGCATGGTAGAGCAGACATA+TGG - chr5_3:43632742-43632761 Msa0813130:intron 45.0%
CATTCGAAAATCGAGTTCGG+TGG + chr5_3:43632891-43632910 None:intergenic 45.0%
GGTAAATTTCCAGACTCACG+TGG - chr5_3:43633068-43633087 Msa0813130:CDS 45.0%
AATTTCCAGACTCACGTGGA+AGG - chr5_3:43633072-43633091 Msa0813130:CDS 45.0%
ATTTCCAGACTCACGTGGAA+GGG - chr5_3:43633073-43633092 Msa0813130:CDS 45.0%
TCGACTGTCTGTAAAGGCAA+CGG - chr5_3:43633131-43633150 Msa0813130:CDS 45.0%
CAAATGTCAAGATTGTGCGG+AGG - chr5_3:43633273-43633292 Msa0813130:CDS 45.0%
TCAAGATTGTGCGGAGGAAA+GGG - chr5_3:43633279-43633298 Msa0813130:CDS 45.0%
TGAGACAACGATGTCTTGTC+TGG - chr5_3:43633394-43633413 Msa0813130:CDS 45.0%
CCACTACAAAATCGCGTTCA+TGG + chr5_3:43633469-43633488 None:intergenic 45.0%
! CCATGAACGCGATTTTGTAG+TGG - chr5_3:43633466-43633485 Msa0813130:CDS 45.0%
TAGTGGAAAACTCAGACTCC+TGG - chr5_3:43633483-43633502 Msa0813130:CDS 45.0%
GCTGAACAATGCTACCAACT+AGG + chr5_3:43633945-43633964 None:intergenic 45.0%
AATTGACGAGCGGAGCTTAC+CGG + chr5_3:43628935-43628954 None:intergenic 50.0%
AGATGGGAGAGAGAGTAAGG+CGG + chr5_3:43629050-43629069 None:intergenic 50.0%
! GAATGACGGGAATCTAACGG+CGG + chr5_3:43629107-43629126 None:intergenic 50.0%
!!! ACCGGAGATGGTTTTGACGA+CGG + chr5_3:43629190-43629209 None:intergenic 50.0%
ATGAGTGAATTCGAGACCGG+CGG + chr5_3:43629220-43629239 None:intergenic 50.0%
GCCATGAGTGAATTCGAGAC+CGG + chr5_3:43629223-43629242 None:intergenic 50.0%
CACTCATGGCAGCGATCAAA+AGG - chr5_3:43629233-43629252 Msa0813130:CDS 50.0%
AATGAAAACTCTCCGGCGAC+CGG + chr5_3:43629276-43629295 None:intergenic 50.0%
! AAGACGACGTCGTTCCGTTT+TGG + chr5_3:43629306-43629325 None:intergenic 50.0%
!! CACCGGTTCAATCATCAACC+CGG - chr5_3:43629443-43629462 Msa0813130:CDS 50.0%
AATCTTGAACCGGGTCGAAC+CGG - chr5_3:43629496-43629515 Msa0813130:CDS 50.0%
!! GTGGTGGTTTGTTTCCACCA+GGG - chr5_3:43629671-43629690 Msa0813130:CDS 50.0%
TTGTTTCCACCAGGGATGTC+TGG - chr5_3:43629679-43629698 Msa0813130:CDS 50.0%
ACACTCAAACCAGACATCCC+TGG + chr5_3:43629691-43629710 None:intergenic 50.0%
!! TGTTAAGGATGGTGGGAGTG+AGG - chr5_3:43629741-43629760 Msa0813130:CDS 50.0%
! GTGAGGAGAAGATGGGTTTG+AGG - chr5_3:43629758-43629777 Msa0813130:CDS 50.0%
GGGTGAGGTGGAGAAATGTT+TGG - chr5_3:43629795-43629814 Msa0813130:CDS 50.0%
GTGGAGAAATGTTTGGGTGC+TGG - chr5_3:43629802-43629821 Msa0813130:CDS 50.0%
!! TTGGGTGCTGGTGTTGTTGT+TGG - chr5_3:43629814-43629833 Msa0813130:CDS 50.0%
!! TGGGTGCTGGTGTTGTTGTT+GGG - chr5_3:43629815-43629834 Msa0813130:CDS 50.0%
!! GCTGGTGTTGTTGTTGGGTT+TGG - chr5_3:43629820-43629839 Msa0813130:CDS 50.0%
ATTGGGGATGATGTGGATGG+TGG - chr5_3:43629859-43629878 Msa0813130:CDS 50.0%
!! ATGTGGATGGTGGAGGTGTT+AGG - chr5_3:43629869-43629888 Msa0813130:CDS 50.0%
!! GGTTTGTTGTGTCGGAGTTG+GGG - chr5_3:43629890-43629909 Msa0813130:CDS 50.0%
! TTTGAGGTTGTTTCCGGGTG+TGG - chr5_3:43629987-43630006 Msa0813130:CDS 50.0%
! GTTGTTTCCGGGTGTGGAAA+AGG - chr5_3:43629993-43630012 Msa0813130:CDS 50.0%
TTCCGGGTGTGGAAAAGGAT+TGG - chr5_3:43629998-43630017 Msa0813130:CDS 50.0%
TCCGGGTGTGGAAAAGGATT+GGG - chr5_3:43629999-43630018 Msa0813130:CDS 50.0%
! TCCCAATCCTTTTCCACACC+CGG + chr5_3:43630003-43630022 None:intergenic 50.0%
GTACTATGCAGGCCTCTTGT+AGG - chr5_3:43630298-43630317 Msa0813130:CDS 50.0%
GGGTCCTTTGTTCCATTTGG+TGG - chr5_3:43630928-43630947 Msa0813130:CDS 50.0%
GAAGGTAGATCCTGCTACTC+CGG - chr5_3:43631062-43631081 Msa0813130:intron 50.0%
TGGAGGACTTGATGTGGCAA+AGG - chr5_3:43631143-43631162 Msa0813130:intron 50.0%
CGTTCCCAATCCCAAATCTG+TGG + chr5_3:43632418-43632437 None:intergenic 50.0%
! CAAGTTTGAAGTAGGGCAGG+AGG + chr5_3:43632583-43632602 None:intergenic 50.0%
! TGGCAAGTTTGAAGTAGGGC+AGG + chr5_3:43632586-43632605 None:intergenic 50.0%
! AAAGGTTGGCTGGCAGAATC+AGG - chr5_3:43632656-43632675 Msa0813130:intron 50.0%
!! GGTGCAGAGTAGTTTGTTGC+AGG - chr5_3:43633034-43633053 Msa0813130:CDS 50.0%
ATTTCCCTTCCACGTGAGTC+TGG + chr5_3:43633080-43633099 None:intergenic 50.0%
GTTGCCTTTACAGACAGTCG+AGG + chr5_3:43633132-43633151 None:intergenic 50.0%
GTCAAGATTGTGCGGAGGAA+AGG - chr5_3:43633278-43633297 Msa0813130:CDS 50.0%
AGACGAGGGTGAAGAAGGTA+TGG - chr5_3:43633433-43633452 Msa0813130:CDS 50.0%
CACAGATACTAGCAGCTGCT+TGG - chr5_3:43633660-43633679 Msa0813130:CDS 50.0%
! GGAAGGCATAGTCCAAGATC+AGG + chr5_3:43633827-43633846 None:intergenic 50.0%
TTGTTTGTGCGTGGCTGCGA+CGG + chr5_3:43629009-43629028 None:intergenic 55.0%
TAAGGCGGAGATGGTGTGGA+GGG + chr5_3:43629035-43629054 None:intergenic 55.0%
AGAGTAAGGCGGAGATGGTG+TGG + chr5_3:43629039-43629058 None:intergenic 55.0%
GAGAGAGAGTAAGGCGGAGA+TGG + chr5_3:43629044-43629063 None:intergenic 55.0%
CGTCACGGAGGGATGAAGAT+GGG + chr5_3:43629066-43629085 None:intergenic 55.0%
ATCTAACGGCGGTTCGAGCT+CGG + chr5_3:43629096-43629115 None:intergenic 55.0%
TGGAGACGGTGCGAGAATGA+CGG + chr5_3:43629121-43629140 None:intergenic 55.0%
!!! GAGATGGTTTTGACGACGGG+AGG + chr5_3:43629186-43629205 None:intergenic 55.0%
!!! CCGGAGATGGTTTTGACGAC+GGG + chr5_3:43629189-43629208 None:intergenic 55.0%
CCCGTCGTCAAAACCATCTC+CGG - chr5_3:43629186-43629205 Msa0813130:CDS 55.0%
ATCTCCGGTAGAAGAACCGC+CGG - chr5_3:43629201-43629220 Msa0813130:CDS 55.0%
GCCGGTCTCGAATTCACTCA+TGG - chr5_3:43629219-43629238 Msa0813130:CDS 55.0%
!! CGGGTTGATGATTGAACCGG+TGG + chr5_3:43629445-43629464 None:intergenic 55.0%
CGGCGGAGAGGATAAAAACC+GGG + chr5_3:43629464-43629483 None:intergenic 55.0%
CCGGCGGAGAGGATAAAAAC+CGG + chr5_3:43629465-43629484 None:intergenic 55.0%
! CCGGTTTTTATCCTCTCCGC+CGG - chr5_3:43629462-43629481 Msa0813130:CDS 55.0%
ACAGAGAAAAACCGGCGGAG+AGG + chr5_3:43629476-43629495 None:intergenic 55.0%
!! GGAGTTAAACCGGTTCGACC+CGG + chr5_3:43629508-43629527 None:intergenic 55.0%
!! GGTGGTGGTTTGTTTCCACC+AGG - chr5_3:43629670-43629689 Msa0813130:CDS 55.0%
CTCAAACCAGACATCCCTGG+TGG + chr5_3:43629688-43629707 None:intergenic 55.0%
TGGTGGGAGTGAGGAGAAGA+TGG - chr5_3:43629750-43629769 Msa0813130:CDS 55.0%
GGTGGGAGTGAGGAGAAGAT+GGG - chr5_3:43629751-43629770 Msa0813130:CDS 55.0%
GTTTAAGGAAGTGGGGGGTG+AGG - chr5_3:43629780-43629799 Msa0813130:CDS 55.0%
GTCGGAGTTGGGGAGATTGT+TGG - chr5_3:43629900-43629919 Msa0813130:CDS 55.0%
GGAGTTGGGGAGATTGTTGG+AGG - chr5_3:43629903-43629922 Msa0813130:CDS 55.0%
!! GAAGGTTTGGTTGATGGGCG+TGG - chr5_3:43629936-43629955 Msa0813130:CDS 55.0%
ATACGTGAAGGGGTGAGCCA+AGG + chr5_3:43632342-43632361 None:intergenic 55.0%
TTGGCTCACCCCTTCACGTA+TGG - chr5_3:43632341-43632360 Msa0813130:intron 55.0%
GGCAGGAGGATCTAGCAATC+TGG + chr5_3:43632569-43632588 None:intergenic 55.0%
GTCTCTGCTCTTCCCTTCAC+CGG + chr5_3:43632721-43632740 None:intergenic 55.0%
GGGAAGAGCAGAGACTTGCA+TGG - chr5_3:43632726-43632745 Msa0813130:intron 55.0%
TGGATCTCGGCTTCCAAGAC+AGG - chr5_3:43632859-43632878 Msa0813130:intron 55.0%
TCGGTGGGTAAAGCCTGTCT+TGG + chr5_3:43632875-43632894 None:intergenic 55.0%
AGGCAACGGCTCTTCTGCTT+TGG - chr5_3:43633145-43633164 Msa0813130:CDS 55.0%
CAACGGCTCTTCTGCTTTGG+TGG - chr5_3:43633148-43633167 Msa0813130:CDS 55.0%
GGCTCTTCTGCTTTGGTGGA+AGG - chr5_3:43633152-43633171 Msa0813130:CDS 55.0%
CCTTCTTCACCCTCGTCTAG+AGG + chr5_3:43633431-43633450 None:intergenic 55.0%
CCTCTAGACGAGGGTGAAGA+AGG - chr5_3:43633428-43633447 Msa0813130:CDS 55.0%
GACGGATACTGCGTCGTCGA+GGG + chr5_3:43628981-43629000 None:intergenic 60.0%
GGAGGGAGGTTGTTTGTGCG+TGG + chr5_3:43629018-43629037 None:intergenic 60.0%
GTAAGGCGGAGATGGTGTGG+AGG + chr5_3:43629036-43629055 None:intergenic 60.0%
GCGTCACGGAGGGATGAAGA+TGG + chr5_3:43629067-43629086 None:intergenic 60.0%
GGAGACGGTGCGAGAATGAC+GGG + chr5_3:43629120-43629139 None:intergenic 60.0%
GGCGGTTCTTCTACCGGAGA+TGG + chr5_3:43629202-43629221 None:intergenic 60.0%
GAGACCGGCGGTTCTTCTAC+CGG + chr5_3:43629208-43629227 None:intergenic 60.0%
GGCAGCGATCAAAAGGTCGC+AGG - chr5_3:43629240-43629259 Msa0813130:CDS 60.0%
TAAGGAAGTGGGGGGTGAGG+TGG - chr5_3:43629783-43629802 Msa0813130:CDS 60.0%
! GGGGATGATGTGGATGGTGG+AGG - chr5_3:43629862-43629881 Msa0813130:CDS 60.0%
GATGGGCGTGGCTGAAACGT+CGG - chr5_3:43629948-43629967 Msa0813130:CDS 60.0%
GTGTCTGGTGTCCGAGCCTA+TGG + chr5_3:43630108-43630127 None:intergenic 60.0%
CACGCGCCGCTTCGTCTGTT+AGG + chr5_3:43628958-43628977 None:intergenic 65.0%
CGACGGATACTGCGTCGTCG+AGG + chr5_3:43628982-43629001 None:intergenic 65.0%
TCGGCAGATGGCGTCACGGA+GGG + chr5_3:43629077-43629096 None:intergenic 65.0%
GAGCTCGGCAGATGGCGTCA+CGG + chr5_3:43629081-43629100 None:intergenic 65.0%
CGAGTGCTCGGAGGTGGAGA+CGG + chr5_3:43629135-43629154 None:intergenic 65.0%
AGAGCTCGAGTGCTCGGAGG+TGG + chr5_3:43629141-43629160 None:intergenic 65.0%
CGACGGAGAGCTCGAGTGCT+CGG + chr5_3:43629147-43629166 None:intergenic 65.0%
CGAGCACTCGAGCTCTCCGT+CGG - chr5_3:43629145-43629164 Msa0813130:CDS 65.0%
GCGATCGAGGGATACGCCGA+CGG + chr5_3:43629164-43629183 None:intergenic 65.0%
TGACGACGGGAGGCGATCGA+GGG + chr5_3:43629176-43629195 None:intergenic 65.0%
TTGACGACGGGAGGCGATCG+AGG + chr5_3:43629177-43629196 None:intergenic 65.0%
GGTCGCAGGCGAATCAACGC+CGG - chr5_3:43629254-43629273 Msa0813130:CDS 65.0%
CGAGCGGAGCTTACCGGCGT+CGG + chr5_3:43628929-43628948 None:intergenic 70.0%
GGCGGAGATGGTGTGGAGGG+AGG + chr5_3:43629032-43629051 None:intergenic 70.0%
CTCGGCAGATGGCGTCACGG+AGG + chr5_3:43629078-43629097 None:intergenic 70.0%
GGCGGTTCGAGCTCGGCAGA+TGG + chr5_3:43629089-43629108 None:intergenic 70.0%
CGGAGAGCTCGAGTGCTCGG+AGG + chr5_3:43629144-43629163 None:intergenic 70.0%
GGCGAATCAACGCCGGTCGC+CGG - chr5_3:43629261-43629280 Msa0813130:CDS 70.0%
GGGCGTGGCTGAAACGTCGG+AGG - chr5_3:43629951-43629970 Msa0813130:CDS 70.0%
GTGGCTGCGACGGCGTGCGA+CGG + chr5_3:43628999-43629018 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43628923 43634052 43628923 ID=Msa0813130;Name=Msa0813130
chr5_3 mRNA 43628923 43634052 43628923 ID=Msa0813130-mRNA-1;Parent=Msa0813130;Name=Msa0813130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.66|1|1|1|3|184|1059
chr5_3 exon 43628923 43630972 43628923 ID=Msa0813130-mRNA-1:exon:13434;Parent=Msa0813130-mRNA-1
chr5_3 exon 43631811 43632054 43631811 ID=Msa0813130-mRNA-1:exon:13433;Parent=Msa0813130-mRNA-1
chr5_3 exon 43632983 43634052 43632983 ID=Msa0813130-mRNA-1:exon:13432;Parent=Msa0813130-mRNA-1
chr5_3 CDS 43632983 43634052 43632983 ID=Msa0813130-mRNA-1:cds;Parent=Msa0813130-mRNA-1
chr5_3 CDS 43631811 43632054 43631811 ID=Msa0813130-mRNA-1:cds;Parent=Msa0813130-mRNA-1
chr5_3 CDS 43629107 43630972 43629107 ID=Msa0813130-mRNA-1:cds;Parent=Msa0813130-mRNA-1
chr5_3 three_prime_UTR 43628923 43629106 43628923 ID=Msa0813130-mRNA-1:three_prime_utr;Parent=Msa0813130-mRNA-1
Gene Sequence

>Msa0813130

ATGCCGACGCCGGTAAGCTCCGCTCGTCAATTCCTAACAGACGAAGCGGCGCGTGCCCTCGACGACGCAGTATCCGTCGCACGCCGTCGCAGCCACGCACAAACAACCTCCCTCCACACCATCTCCGCCTTACTCTCTCTCCCATCTTCATCCCTCCGTGACGCCATCTGCCGAGCTCGAACCGCCGTTAGATTCCCGTCATTCTCGCACCGTCTCCACCTCCGAGCACTCGAGCTCTCCGTCGGCGTATCCCTCGATCGCCTCCCGTCGTCAAAACCATCTCCGGTAGAAGAACCGCCGGTCTCGAATTCACTCATGGCAGCGATCAAAAGGTCGCAGGCGAATCAACGCCGGTCGCCGGAGAGTTTTCATTTCTATAACCAAAACGGAACGACGTCGTCTTTGTTGAAAGTTGAACTGAAACACTTCGTTTTATCCATTCTTGATGATCCAATAGTAAACCGTGTTTTTTCAGAAGCTGGTTTTCGTAGTTGTGATGTTAAACTCGCTTTACTTCAACCACCGGTTCAATCATCAACCCGGTTTTTATCCTCTCCGCCGGTTTTTCTCTGTAATCTTGAACCGGGTCGAACCGGTTTAACTCCTTTTCCTTTAGGGGTTGATGAGAATTCAAGAAGAATAGCTGAGGTTATAGCAATGAAAGGTAAAAAGATGAATCCTTTGTTGATGGGTGTTTATGCAAAAGATGCTTTTAGGAATTTTGTTGAGTTGTTACAAAAGGGTTTAGGTGGTGGTTTGTTTCCACCAGGGATGTCTGGTTTGAGTGTTGTGTGTGTTGAAAAGGAGATTGTAGAGTTTGTTAAGGATGGTGGGAGTGAGGAGAAGATGGGTTTGAGGTTTAAGGAAGTGGGGGGTGAGGTGGAGAAATGTTTGGGTGCTGGTGTTGTTGTTGGGTTTGGAGAGATTGAGGTTTTGATTGGGGATGATGTGGATGGTGGAGGTGTTAGGTTTGTTGTGTCGGAGTTGGGGAGATTGTTGGAGGTTTATGGTGAGAAGGTTTGGTTGATGGGCGTGGCTGAAACGTCGGAGGCTTATTCGAAGTTTTTGAGTTTGATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTCCTGAAAGCAAAAGTCCCATTAGCTCTACAAATGCATCATTTACTCGCTGTGACAAATGCAATGAAAAGTATGAACAAGAAGTTGCTGATGCTTTGAAGGTAGATCCTGCTACTCCGGCATCAAATTACTCAACAAAGTTGCCTTGGTTTAAAAAGGTTGTTGATGTGGATACACATGGAGGACTTGATGTGGCAAAGGCAAATGAAGAAAATACAAGCTTGAATGATAAGATATTGGGATTTCAAAAGAAATGGAATGATATTTGTCAACATCTTCATCAAGCAAGGTCTCATGTCCCATCACTTGAAGTTTTACGGTTTGGTTCAGGTTTTAACGAAAGCAGCAGTAAAGATCCATCACTTAATGAACTCAAATGTTCTAGTCCATTTTCCTACATGCCGAAAGAGTTGCATGGTACTTTTCCATCAAAACAGTTATCACCTACTCCAGTACATACTGGTACAGTTAGTGTCAATGTTAGAACTGATCATGTGCCGAAAGTTACAGAGACTCAACAAAATGACATGACGACTCCTTGGCTCACCCCTTCACGTATGGCCAATATGAGTGCACCAGAAAACAAATCATCTTCATCCCTTATTCCTGTGACCACAGATTTGGGATTGGGAACGTTATATACATCAACATCAATTGCTCACAAGCCAGATACTTCAGAATTTCAAGATAAAATAAAGCATTTTGAGCACTTTCCAGACTCTACTTCAGCTGATTCTGTTGCTTTCAATGGAAATACATCACACCAGATTGCTAGATCCTCCTGCCCTACTTCAAACTTGCCAACAAAATTTGATTCAATAGATTTCAAGTCTCTTAACAAACTTCTCTTTGAAAAGGTTGGCTGGCAGAATCAGGCGATATGTGATATCAACCGAACTCTGTCCCTTCATAAATCCGGTGAAGGGAAGAGCAGAGACTTGCATGGTAGAGCAGACATATGGTTTGCTTTCCTAGGACCAGATAGAATTGGAAAAAAGAAAATTGCTTCGGCACTTGCAGAGACTATATTTGGAAATACAGAAAGCATCATCTCTTTGGATCTCGGCTTCCAAGACAGGCTTTACCCACCGAACTCGATTTTCGAATGCCAAAAGTCATTATGTTATGACTTGTTTATAAGGAAAACAGTTGTGGACTATATTGCTGGGGAGTTGAGTAAAAATCCCCATTCCGTTGTCTTTCTAGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAGTAGTTTGTTGCAGGCAATAAGAAGAGGTAAATTTCCAGACTCACGTGGAAGGGAAATAAGCATCAACAATGCAATCTTTCTTTTATCCTCGACTGTCTGTAAAGGCAACGGCTCTTCTGCTTTGGTGGAAGGCAACTTGTTTTCTGAAGAAACAATACTTGAAGCCAAAAGATGTCAAATGCAATTACTACTTGTAGATACATCTAAGGATGCCAAAAGAAGCTTTAGTACAAATGTCAAGATTGTGCGGAGGAAAGGGTTTTCCAAACCATCATTTATGAATAAAAGAAAACGAGCTGATACTAGTGACTTCAAAGAGGGAGCAGCAAGCAAGATGCAAAAACAGGTTTGTGAGACAACGATGTCTTGTCTGGATTTAAATATGCCTCTAGACGAGGGTGAAGAAGGTATGGACGACAATGACCATGAACGCGATTTTGTAGTGGAAAACTCAGACTCCTGGTTTAGTGATTTCTGCGATAAAATGGATGAAAAAGTGGTTTTCAAGCCATTCAATTTTGATGCGCTTGCTGAACAATTACTAAAAAGCATTAGCATACAATTTGAAAAGACATTTGGTTCAGAGTTTCAGTTGGAAATTGATTATGAGGTAATGGCACAGATACTAGCAGCTGCTTGGTTAGCAGACAAGAAAAATGCAGTGGAGGATTGGGTTGAAAGTGTACTTGGCAAAGGCTTCATTGAAGCTCAGCAGAAATACCACCCTGCAACTAAATATGTTGTCAAATTAGTTAATTGTGAGTCTATTTTTGTAGAAGAACCTGATCTTGGACTATGCCTTCCAGCTAGCATTAACTTGAAGTAA
Protein sequence

>Msa0813130

MPTPVSSARQFLTDEAARALDDAVSVARRRSHAQTTSLHTISALLSLPSSSLRDAICRARTAVRFPSFSHRLHLRALELSVGVSLDRLPSSKPSPVEEPPVSNSLMAAIKRSQANQRRSPESFHFYNQNGTTSSLLKVELKHFVLSILDDPIVNRVFSEAGFRSCDVKLALLQPPVQSSTRFLSSPPVFLCNLEPGRTGLTPFPLGVDENSRRIAEVIAMKGKKMNPLLMGVYAKDAFRNFVELLQKGLGGGLFPPGMSGLSVVCVEKEIVEFVKDGGSEEKMGLRFKEVGGEVEKCLGAGVVVGFGEIEVLIGDDVDGGGVRFVVSELGRLLEVYGEKVWLMGVAETSEAYSKFLSLMGSFVPFGGFFSTPPESKSPISSTNASFTRCDKCNEKYEQEVADALKVDPATPASNYSTKLPWFKKVVDVDTHGGLDVAKANEENTSLNDKILGFQKKWNDICQHLHQARSHVPSLEVLRFGSGFNESSSKDPSLNELKCSSPFSYMPKELHGTFPSKQLSPTPVHTGTVSVNVRTDHVPKVTETQQNDMTTPWLTPSRMANMSAPENKSSSSLIPVTTDLGLGTLYTSTSIAHKPDTSEFQDKIKHFEHFPDSTSADSVAFNGNTSHQIARSSCPTSNLPTKFDSIDFKSLNKLLFEKVGWQNQAICDINRTLSLHKSGEGKSRDLHGRADIWFAFLGPDRIGKKKIASALAETIFGNTESIISLDLGFQDRLYPPNSIFECQKSLCYDLFIRKTVVDYIAGELSKNPHSVVFLENVDKADFLVQSSLLQAIRRGKFPDSRGREISINNAIFLLSSTVCKGNGSSALVEGNLFSEETILEAKRCQMQLLLVDTSKDAKRSFSTNVKIVRRKGFSKPSFMNKRKRADTSDFKEGAASKMQKQVCETTMSCLDLNMPLDEGEEGMDDNDHERDFVVENSDSWFSDFCDKMDEKVVFKPFNFDALAEQLLKSISIQFEKTFGSEFQLEIDYEVMAQILAAAWLADKKNAVEDWVESVLGKGFIEAQQKYHPATKYVVKLVNCESIFVEEPDLGLCLPASINLK*