AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0814490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0814490 MtrunA17_Chr5g0432631 92.749 662 46 1 1 660 1 662 0.0 1258
Msa0814490 MtrunA17_Chr5g0432641 79.450 691 98 5 1 687 1 651 0.0 1074
Msa0814490 MtrunA17_Chr3g0135721 74.009 681 150 6 3 671 2 667 0.0 976
Msa0814490 MtrunA17_Chr3g0135761 70.772 674 170 6 3 665 2 659 0.0 913
Msa0814490 MtrunA17_Chr8g0362771 61.966 702 201 9 1 664 1 674 0.0 818
Msa0814490 MtrunA17_Chr5g0432391 67.917 480 91 7 179 652 2 424 0.0 590
Msa0814490 MtrunA17_Chr1g0158881 58.296 446 178 4 215 659 316 754 7.70e-172 510
Msa0814490 MtrunA17_Chr3g0143721 46.581 468 227 6 219 666 239 703 5.67e-134 410
Msa0814490 MtrunA17_Chr2g0297281 45.733 457 226 8 220 660 279 729 1.68e-123 385
Msa0814490 MtrunA17_Chr4g0052411 45.000 460 226 8 220 660 222 673 6.49e-122 379
Msa0814490 MtrunA17_Chr3g0135791 69.412 255 77 1 412 665 1 255 9.71e-117 352
Msa0814490 MtrunA17_Chr7g0217421 48.238 369 180 5 220 582 32 395 2.31e-112 344
Msa0814490 MtrunA17_Chr6g0476861 39.669 484 273 7 191 660 159 637 3.33e-111 350
Msa0814490 MtrunA17_Chr7g0248361 38.900 491 274 8 192 660 146 632 4.82e-106 336
Msa0814490 MtrunA17_Chr7g0260601 40.789 456 251 7 219 660 230 680 3.52e-105 335
Msa0814490 MtrunA17_Chr4g0031821 41.031 446 242 8 219 650 310 748 3.49e-101 328
Msa0814490 MtrunA17_Chr3g0094871 38.190 453 249 8 221 660 3 437 1.17e-96 305
Msa0814490 MtrunA17_Chr5g0429571 43.852 431 212 8 226 630 311 737 2.45e-91 301
Msa0814490 MtrunA17_Chr3g0104211 43.018 444 225 9 226 644 302 742 9.25e-90 297
Msa0814490 MtrunA17_Chr8g0388371 36.492 496 266 11 213 661 383 876 5.58e-80 273
Msa0814490 MtrunA17_Chr3g0135781 67.391 184 60 0 203 386 29 212 3.45e-79 251
Msa0814490 MtrunA17_Chr1g0168321 36.175 434 214 9 192 607 118 506 9.49e-75 249
Msa0814490 MtrunA17_Chr6g0456351 45.342 322 156 6 172 483 265 576 2.64e-70 240
Msa0814490 MtrunA17_Chr2g0331161 36.652 442 257 8 229 659 415 844 6.19e-68 239
Msa0814490 MtrunA17_Chr3g0135741 69.343 137 41 1 415 550 2 138 8.21e-55 184
Msa0814490 MtrunA17_Chr3g0129971 32.584 445 283 7 227 658 294 734 1.87e-54 200
Msa0814490 MtrunA17_Chr8g0357301 29.718 461 272 11 244 657 485 940 7.14e-51 191
Msa0814490 MtrunA17_Chr1g0180791 43.103 232 131 1 231 461 207 438 1.73e-48 182
Msa0814490 MtrunA17_Chr1g0180791 34.892 278 172 4 179 452 433 705 6.55e-42 163
Msa0814490 MtrunA17_Chr7g0264521 42.672 232 132 1 231 461 208 439 1.05e-47 180
Msa0814490 MtrunA17_Chr7g0264521 33.813 278 175 3 179 452 434 706 6.23e-41 160
Msa0814490 MtrunA17_Chr2g0327121 42.241 232 133 1 231 461 209 440 3.48e-47 179
Msa0814490 MtrunA17_Chr2g0327121 39.823 226 132 2 231 452 482 707 8.40e-42 162
Msa0814490 MtrunA17_Chr4g0050561 37.647 255 154 2 229 478 156 410 6.06e-47 171
Msa0814490 MtrunA17_Chr5g0432681 64.029 139 22 2 538 670 1 117 6.48e-46 161
Msa0814490 MtrunA17_Chr3g0135771 57.962 157 39 4 1 138 1 149 1.92e-45 159
Msa0814490 MtrunA17_Chr3g0141901 39.738 229 131 3 231 452 138 366 3.94e-44 163
Msa0814490 MtrunA17_Chr3g0145011 38.793 232 135 3 228 452 138 369 5.12e-44 163
Msa0814490 MtrunA17_Chr1g0182711 39.184 245 145 2 231 471 190 434 1.13e-43 163
Msa0814490 MtrunA17_Chr7g0262801 39.184 245 145 2 231 471 189 433 4.00e-43 161
Msa0814490 MtrunA17_Chr5g0432671 73.148 108 25 1 424 531 1 104 5.19e-43 150
Msa0814490 MtrunA17_Chr1g0192151 39.407 236 139 2 231 462 169 404 1.49e-42 159
Msa0814490 MtrunA17_Chr4g0014731 39.407 236 139 2 231 462 170 405 1.85e-42 159
Msa0814490 MtrunA17_Chr7g0255651 36.918 279 159 7 213 479 271 544 3.65e-42 161
Msa0814490 MtrunA17_Chr7g0255651 31.250 224 132 8 254 462 39 255 3.41e-16 82.4
Msa0814490 MtrunA17_Chr8g0345461 35.316 269 163 3 220 477 149 417 3.62e-41 155
Msa0814490 MtrunA17_Chr1g0202371 39.256 242 140 5 215 452 383 621 5.45e-40 156
Msa0814490 MtrunA17_Chr7g0255691 35.106 282 170 5 213 490 275 547 1.52e-39 153
Msa0814490 MtrunA17_Chr7g0255691 35.780 218 123 7 244 450 32 243 1.63e-26 114
Msa0814490 MtrunA17_Chr2g0277831 42.920 226 123 3 231 451 245 469 2.11e-39 155
Msa0814490 MtrunA17_Chr2g0277831 40.444 225 131 2 228 449 532 756 9.55e-39 153
Msa0814490 MtrunA17_Chr1g0200081 35.316 269 162 4 220 477 159 426 2.44e-39 150
Msa0814490 MtrunA17_Chr3g0086401 41.909 241 119 7 230 449 386 626 3.50e-39 154
Msa0814490 MtrunA17_Chr3g0086401 39.035 228 125 5 226 442 89 313 8.94e-33 134
Msa0814490 MtrunA17_Chr7g0255721 38.115 244 146 4 231 469 687 930 6.24e-39 154
Msa0814490 MtrunA17_Chr7g0255721 37.900 219 132 3 231 447 388 604 1.39e-30 128
Msa0814490 MtrunA17_Chr7g0255641 36.179 246 150 4 230 469 659 903 6.44e-39 154
Msa0814490 MtrunA17_Chr7g0255641 38.333 180 108 2 267 445 432 609 3.42e-25 111
Msa0814490 MtrunA17_Chr8g0387641 36.863 255 151 6 215 463 507 757 2.24e-38 152
Msa0814490 MtrunA17_Chr3g0135731 74.713 87 22 0 579 665 1 87 4.17e-38 137
Msa0814490 MtrunA17_Chr4g0043381 36.923 260 155 3 231 483 839 1096 4.74e-38 152
Msa0814490 MtrunA17_Chr3g0086411 38.750 240 128 5 229 449 215 454 4.85e-38 148
Msa0814490 MtrunA17_Chr3g0086411 40.462 173 74 5 316 477 7 161 2.52e-20 95.1
Msa0814490 MtrunA17_Chr6g0462581 38.934 244 138 7 215 452 486 724 5.05e-38 151
Msa0814490 MtrunA17_Chr1g0202381 38.589 241 140 6 217 452 456 693 1.01e-37 150
Msa0814490 MtrunA17_Chr1g0204031 38.589 241 140 6 217 452 545 782 1.34e-36 147
Msa0814490 MtrunA17_Chr5g0397121 36.475 244 145 6 215 452 499 738 1.12e-35 144
Msa0814490 MtrunA17_Chr3g0108321 39.796 196 114 2 221 412 151 346 1.82e-35 138
Msa0814490 MtrunA17_Chr3g0135751 77.011 87 16 1 56 138 10 96 1.55e-34 127
Msa0814490 MtrunA17_Chr1g0195741 39.130 230 131 6 223 446 932 1158 1.58e-34 141
Msa0814490 MtrunA17_Chr6g0459561 36.975 238 136 8 231 458 384 617 1.05e-33 137
Msa0814490 MtrunA17_Chr3g0116131 36.797 231 139 4 223 448 896 1124 1.24e-33 138
Msa0814490 MtrunA17_Chr4g0038101 35.776 232 142 4 226 452 718 947 1.27e-33 138
Msa0814490 MtrunA17_Chr1g0195731 36.245 229 139 4 223 446 928 1154 1.51e-33 138
Msa0814490 MtrunA17_Chr4g0026631 35.319 235 136 9 216 442 115 341 4.45e-33 132
Msa0814490 MtrunA17_Chr8g0362761 48.052 154 26 2 186 333 8 113 1.50e-32 122
Msa0814490 MtrunA17_Chr4g0004121 33.125 320 169 12 213 496 219 529 7.65e-32 130
Msa0814490 MtrunA17_Chr2g0321241 34.894 235 137 9 216 442 120 346 8.34e-32 129
Msa0814490 MtrunA17_Chr2g0316851 36.842 228 128 5 239 451 597 823 1.31e-31 132
Msa0814490 MtrunA17_Chr7g0255901 37.179 234 132 7 228 451 638 866 1.31e-31 132
Msa0814490 MtrunA17_Chr4g0033451 34.766 256 159 4 220 467 370 625 3.05e-31 131
Msa0814490 MtrunA17_Chr7g0246111 36.161 224 136 5 228 447 211 431 5.95e-31 127
Msa0814490 MtrunA17_Chr3g0127401 34.892 278 161 8 229 490 81 354 1.72e-30 124
Msa0814490 MtrunA17_Chr3g0127431 34.364 291 164 8 230 502 85 366 2.66e-30 124
Msa0814490 MtrunA17_Chr1g0190401 33.333 243 145 6 231 462 679 915 5.74e-30 127
Msa0814490 MtrunA17_Chr6g0459541 30.986 284 147 10 231 469 44 323 3.68e-29 119
Msa0814490 MtrunA17_Chr4g0052271 34.061 229 142 6 228 451 118 342 1.47e-28 118
Msa0814490 MtrunA17_Chr5g0432661 72.727 77 17 1 179 255 2 74 1.68e-28 109
Msa0814490 MtrunA17_Chr2g0327231 39.506 162 94 2 228 385 345 506 1.85e-27 117
Msa0814490 MtrunA17_Chr2g0327231 37.931 87 51 1 231 317 155 238 3.30e-11 66.2
Msa0814490 MtrunA17_Chr6g0459551 31.873 251 130 9 231 447 104 347 1.79e-25 109
Msa0814490 MtrunA17_Chr4g0047411 32.117 274 160 8 254 501 202 475 2.06e-23 105
Msa0814490 MtrunA17_Chr6g0459531 30.180 222 120 8 231 447 69 260 5.52e-20 91.7
Msa0814490 MtrunA17_Chr2g0289231 29.515 227 141 5 265 481 342 559 8.94e-20 93.6
Msa0814490 MtrunA17_Chr8g0392971 34.314 102 66 1 435 535 51 152 4.67e-12 64.7
Msa0814490 MtrunA17_Chr8g0392981 30.833 120 77 2 544 659 1 118 1.25e-11 62.4
Msa0814490 MtrunA17_Chr2g0315991 30.000 160 96 5 261 412 230 381 3.11e-11 66.2
Msa0814490 MtrunA17_Chr6g0466811 30.114 176 98 6 236 394 215 382 5.39e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0814490 AT2G26140.1 63.490 682 218 7 3 670 2 666 0.0 835
Msa0814490 AT5G53170.1 48.680 606 262 12 85 659 197 784 9.28e-172 511
Msa0814490 AT1G50250.1 46.170 470 226 7 219 666 249 713 3.55e-133 409
Msa0814490 AT5G42270.1 46.795 468 226 6 219 666 237 701 1.44e-131 404
Msa0814490 AT1G06430.1 45.952 457 225 8 220 660 210 660 9.40e-125 386
Msa0814490 AT1G06430.3 45.952 457 225 8 220 660 210 660 9.40e-125 386
Msa0814490 AT1G06430.2 45.952 457 225 8 220 660 210 660 9.40e-125 386
Msa0814490 AT5G15250.1 46.841 459 219 10 220 660 214 665 3.14e-123 382
Msa0814490 AT2G30950.4 45.534 459 224 8 220 660 221 671 1.18e-122 381
Msa0814490 AT2G30950.1 45.534 459 224 8 220 660 217 667 1.25e-122 381
Msa0814490 AT2G30950.2 45.534 459 224 8 220 660 217 667 1.25e-122 381
Msa0814490 AT2G30950.3 45.534 459 224 8 220 660 217 667 1.25e-122 381
Msa0814490 AT2G29080.1 41.309 443 242 7 231 660 321 758 3.21e-102 331
Msa0814490 AT1G07510.1 40.090 444 245 8 231 660 326 762 3.68e-100 325
Msa0814490 AT5G58870.1 43.596 445 220 10 226 644 324 763 3.79e-93 306
Msa0814490 AT3G47060.1 43.111 450 215 10 226 644 320 759 1.30e-91 302
Msa0814490 AT4G23940.1 37.474 475 254 9 227 659 425 898 5.43e-83 282
Msa0814490 AT5G15250.2 41.570 433 181 15 126 497 93 514 8.42e-83 271
Msa0814490 AT3G02450.1 50.000 272 129 2 212 476 309 580 1.55e-73 249
Msa0814490 AT3G16290.1 35.068 442 264 5 229 659 407 836 1.26e-68 241
Msa0814490 AT5G64580.1 33.056 481 282 13 226 680 310 776 5.39e-58 211
Msa0814490 AT1G79560.1 28.137 526 314 11 195 661 444 964 2.40e-52 196
Msa0814490 AT1G79560.2 28.137 526 314 11 195 661 444 964 2.61e-52 195
Msa0814490 AT1G79560.3 28.627 517 305 11 195 652 444 955 4.65e-52 194
Msa0814490 AT3G09840.1 42.241 232 133 1 231 461 206 437 9.32e-48 181
Msa0814490 AT3G09840.1 37.885 227 136 2 231 452 479 705 9.18e-41 160
Msa0814490 AT5G03340.1 42.241 232 133 1 231 461 206 437 1.07e-47 181
Msa0814490 AT5G03340.1 38.496 226 135 2 231 452 479 704 2.20e-41 162
Msa0814490 AT3G53230.1 41.597 238 138 1 231 467 207 444 3.58e-47 179
Msa0814490 AT3G53230.1 40.092 217 126 2 231 443 480 696 6.70e-42 163
Msa0814490 AT5G19990.2 37.743 257 151 3 229 478 100 354 5.34e-46 167
Msa0814490 AT5G19990.1 37.647 255 154 2 229 478 158 412 6.84e-46 169
Msa0814490 AT5G19990.3 37.647 255 154 2 229 478 158 412 6.84e-46 169
Msa0814490 AT5G20000.1 37.743 257 151 3 229 478 158 412 8.94e-46 169
Msa0814490 AT1G45000.1 41.048 229 128 3 231 452 138 366 5.49e-44 163
Msa0814490 AT2G20140.1 39.592 245 144 2 231 471 187 431 1.54e-43 163
Msa0814490 AT3G05530.1 40.254 236 137 2 231 462 170 405 2.12e-43 162
Msa0814490 AT5G43010.1 31.793 368 222 9 106 452 7 366 8.89e-43 160
Msa0814490 AT4G29040.1 38.776 245 146 2 231 471 187 431 1.33e-42 160
Msa0814490 AT1G09100.1 38.983 236 140 2 231 462 169 404 2.01e-41 156
Msa0814490 AT3G56690.1 38.525 244 145 4 231 469 723 966 3.39e-41 162
Msa0814490 AT3G56690.1 35.000 240 152 2 230 465 383 622 6.14e-31 130
Msa0814490 AT1G53750.1 35.316 269 163 3 220 477 149 417 7.75e-41 155
Msa0814490 AT1G53780.2 35.316 269 163 3 220 477 342 610 4.33e-40 156
Msa0814490 AT1G53780.1 35.316 269 163 3 220 477 321 589 5.71e-40 155
Msa0814490 AT1G53780.4 35.316 269 163 3 220 477 321 589 5.71e-40 155
Msa0814490 AT1G53780.3 35.316 269 163 3 220 477 320 588 5.81e-40 155
Msa0814490 AT3G01610.2 38.211 246 139 3 218 451 219 463 7.81e-40 157
Msa0814490 AT3G01610.2 39.918 243 141 4 224 462 520 761 1.14e-33 138
Msa0814490 AT3G01610.1 38.211 246 139 3 218 451 219 463 8.65e-40 157
Msa0814490 AT3G01610.1 39.918 243 141 4 224 462 520 761 1.15e-33 138
Msa0814490 AT5G08470.1 41.364 220 128 1 231 449 843 1062 2.39e-39 156
Msa0814490 AT5G08470.3 41.364 220 128 1 231 449 834 1053 2.46e-39 156
Msa0814490 AT5G58290.1 36.842 247 152 2 221 463 144 390 3.20e-39 150
Msa0814490 AT4G28000.3 37.255 255 149 7 215 463 503 752 3.46e-39 155
Msa0814490 AT4G28000.2 37.255 255 149 7 215 463 503 752 3.65e-39 155
Msa0814490 AT4G28000.1 37.255 255 149 7 215 463 501 750 4.16e-39 155
Msa0814490 AT5G52882.1 37.705 244 141 7 215 452 500 738 7.73e-38 151
Msa0814490 AT1G64110.2 37.295 244 143 6 215 452 504 743 1.58e-37 150
Msa0814490 AT1G64110.4 37.295 244 143 6 215 452 504 743 1.58e-37 150
Msa0814490 AT1G64110.5 37.295 244 143 6 215 452 502 741 1.81e-37 150
Msa0814490 AT1G64110.3 37.295 244 143 6 215 452 502 741 1.81e-37 150
Msa0814490 AT1G64110.1 37.295 244 143 6 215 452 499 738 2.00e-37 150
Msa0814490 AT2G03670.1 35.632 261 158 4 213 468 272 527 1.30e-36 145
Msa0814490 AT2G03670.1 32.530 249 159 4 232 472 22 269 2.88e-28 120
Msa0814490 AT1G03000.1 36.797 231 137 5 228 451 654 882 1.25e-33 138
Msa0814490 AT1G02890.1 36.100 241 139 6 215 446 927 1161 7.16e-33 136
Msa0814490 AT4G02480.1 36.100 241 139 5 215 446 946 1180 7.90e-33 136
Msa0814490 AT2G45500.4 32.222 270 173 7 228 492 79 343 2.60e-32 129
Msa0814490 AT2G45500.3 32.222 270 173 7 228 492 79 343 2.60e-32 129
Msa0814490 AT2G27600.1 36.239 218 130 7 230 442 130 343 4.02e-32 130
Msa0814490 AT2G45500.2 32.222 270 173 7 228 492 212 476 1.09e-31 129
Msa0814490 AT2G45500.1 32.222 270 173 7 228 492 216 480 1.41e-31 129
Msa0814490 AT1G50140.2 35.345 232 143 4 226 452 686 915 1.41e-31 132
Msa0814490 AT1G50140.5 35.345 232 143 4 226 452 686 915 1.41e-31 132
Msa0814490 AT1G50140.3 35.345 232 143 4 226 452 708 937 1.43e-31 132
Msa0814490 AT1G50140.1 35.345 232 143 4 226 452 708 937 1.43e-31 132
Msa0814490 AT1G50140.4 35.345 232 143 4 226 452 708 937 1.43e-31 132
Msa0814490 AT2G45500.5 32.222 270 173 7 228 492 222 486 1.46e-31 129
Msa0814490 AT3G27120.1 33.712 264 151 9 226 469 397 656 1.57e-31 131
Msa0814490 AT3G15120.1 36.250 240 145 3 216 449 706 943 1.79e-31 132
Msa0814490 AT3G15120.2 36.250 240 145 3 216 449 716 953 1.83e-31 132
Msa0814490 AT1G05910.1 32.014 278 181 4 220 489 368 645 1.26e-30 129
Msa0814490 AT1G80350.1 34.387 253 144 8 213 447 213 461 3.20e-30 125
Msa0814490 AT3G19740.1 34.483 232 145 5 226 452 698 927 3.48e-30 127
Msa0814490 AT3G04340.1 37.306 193 117 2 236 424 788 980 5.62e-30 127
Msa0814490 AT4G24860.1 34.361 227 142 4 231 452 819 1043 1.02e-29 126
Msa0814490 AT4G24860.3 34.361 227 142 4 231 452 817 1041 1.10e-29 126
Msa0814490 AT4G24860.2 34.361 227 142 4 231 452 815 1039 1.20e-29 126
Msa0814490 AT4G24860.4 34.361 227 142 4 231 452 792 1016 1.22e-29 126
Msa0814490 AT2G34560.1 35.088 228 138 6 230 451 101 324 5.64e-29 119
Msa0814490 AT5G53540.1 33.209 268 161 7 229 482 84 347 6.53e-29 120
Msa0814490 AT2G34560.2 35.088 228 138 6 230 451 110 333 7.49e-29 119
Msa0814490 AT2G03670.2 32.530 249 159 4 232 472 22 269 7.59e-29 120
Msa0814490 AT2G03670.2 33.121 157 95 4 213 364 272 423 2.03e-13 73.6
Msa0814490 AT1G62130.2 34.468 235 135 6 219 448 733 953 6.39e-28 120
Msa0814490 AT4G27680.1 32.472 271 165 7 229 485 81 347 6.46e-28 117
Msa0814490 AT1G62130.1 34.468 235 135 6 219 448 740 960 6.65e-28 120
Msa0814490 AT1G45000.2 41.304 138 77 2 231 364 138 275 3.09e-23 102
Msa0814490 AT4G04910.1 30.769 286 172 8 254 513 239 524 9.14e-23 103
Msa0814490 AT4G04180.2 29.583 240 154 5 216 445 298 532 3.13e-22 102
Msa0814490 AT4G04180.1 29.583 240 154 5 216 445 303 537 3.19e-22 102
Msa0814490 AT5G08470.2 38.621 145 88 1 231 374 843 987 1.57e-21 100
Msa0814490 AT1G02890.2 30.833 240 125 6 215 446 927 1133 3.84e-21 99.4
Msa0814490 AT4G05380.1 32.903 155 78 6 260 396 238 384 9.02e-11 65.1

Find 178 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAACTATGGCATACAATT+TGG 0.177327 5_3:+46682518 Msa0814490:CDS
AAAAGGACGGCGAGAGATTT+TGG 0.226559 5_3:+46684161 Msa0814490:CDS
TACATTTGGTCGTTTGAATT+TGG 0.239758 5_3:-46683976 None:intergenic
TAAATTAAAATTCCATTGTT+TGG 0.266957 5_3:+46685193 Msa0814490:exon
CTGAAGCATCACACACTTAC+AGG 0.275516 5_3:+46685064 Msa0814490:CDS
TGAACCTTCTCAAACTTCTT+AGG 0.278961 5_3:+46685537 Msa0814490:three_prime_UTR
CCATAAAGCAAAACACCTTT+TGG 0.288448 5_3:-46683751 None:intergenic
AGCGCTATTGCTGGAGAGGC+TGG 0.309034 5_3:+46683805 Msa0814490:CDS
CCAACAAAAGATGGGATTCT+TGG 0.319580 5_3:+46682439 Msa0814490:CDS
CATACAATTTGGTTTGTTGC+AGG 0.333814 5_3:+46682529 Msa0814490:CDS
CACCGTCCTTTGCTGCCCTC+AGG 0.333846 5_3:-46684469 None:intergenic
GAGAGCCTGTTCTGATCTTT+AGG 0.338621 5_3:-46684710 None:intergenic
CTCAAATTTATGTAGGGAAT+AGG 0.339123 5_3:+46681352 Msa0814490:intron
AAACCTGCATTCGAGCTTGA+TGG 0.340073 5_3:-46679893 None:intergenic
AAAATTTCAAAGCGCAACTA+TGG 0.345391 5_3:+46682506 Msa0814490:CDS
CGCACTGGAGAAGATTATAA+TGG 0.348117 5_3:+46684523 Msa0814490:CDS
CAGTTTACACCTGGGTTCTC+TGG 0.351662 5_3:+46684413 Msa0814490:CDS
ATTGATGAGATTGATGCTAT+TGG 0.359213 5_3:+46683946 Msa0814490:CDS
ATTAAAGATTTACTTGCAAA+TGG 0.362072 5_3:+46685094 Msa0814490:CDS
CACATTCTTTCATGGCTGCT+TGG 0.362228 5_3:+46679835 None:intergenic
CATAAGTTTGAAAAGTTTGA+AGG 0.363631 5_3:+46681104 Msa0814490:CDS
TGCCAGATTTCCTAGATATC+TGG 0.363703 5_3:-46681391 None:intergenic
ACAATAGTTGCCTGGTGAAC+AGG 0.365159 5_3:-46684650 None:intergenic
GTTCCCAATCCAGATGTAAA+AGG 0.366841 5_3:+46684144 Msa0814490:CDS
GTCAAAGCTAAGGCTATGTT+TGG 0.367541 5_3:+46685130 Msa0814490:CDS
ATCATGTGTGCTCACGGCTT+TGG 0.376647 5_3:-46684492 None:intergenic
CAGTTGCTTGTTGAGTTAGA+TGG 0.381889 5_3:+46684018 Msa0814490:CDS
TATGCTCTAATCACGGCTTC+AGG 0.391073 5_3:-46681483 None:intergenic
AGAATTATGTAGAGAAGGTA+AGG 0.393548 5_3:-46685364 None:intergenic
GGACAAAGTGGAGTTAATTC+CGG 0.393727 5_3:+46684800 Msa0814490:CDS
AGGCAAATGGTTACTAGATA+TGG 0.396114 5_3:+46684860 Msa0814490:CDS
GTCCAGATATCTAGGAAATC+TGG 0.402847 5_3:+46681389 Msa0814490:CDS
GATAAGGTTGCTGCATTAGA+AGG 0.404160 5_3:+46682481 Msa0814490:CDS
TTCTCCCAGTCCAGATATCT+AGG 0.408648 5_3:+46681381 Msa0814490:CDS
GGAGCTCACATCGTGTATAA+AGG 0.424440 5_3:+46682577 Msa0814490:CDS
TCACAGCGCCTTACTTGTCT+TGG 0.425206 5_3:+46683718 Msa0814490:intron
TGGTGCTGACCTTGCAAACT+TGG 0.428647 5_3:+46684433 Msa0814490:CDS
CTTTATGGCCCGCCTGGCAC+CGG 0.429545 5_3:+46683766 Msa0814490:CDS
AAACAATGCAGCTGCAGCTT+CGG 0.430789 5_3:+46685489 Msa0814490:three_prime_UTR
CTCATGGGGAGTCTCGTGGC+AGG 0.432045 5_3:+46684675 Msa0814490:CDS
AAGTCAACTTCACGTACATT+TGG 0.434246 5_3:-46683990 None:intergenic
ATCAGTATAAATTGCAACTA+AGG 0.437936 5_3:-46684618 None:intergenic
AGCTGCAGCTGCATTGTTTG+TGG 0.439363 5_3:-46685485 None:intergenic
ATGTTGGTGAGCGCTATTGC+TGG 0.440694 5_3:+46683796 Msa0814490:CDS
AACTTCTCTGGCCAGGCAAA+TGG 0.442048 5_3:+46684847 Msa0814490:CDS
TATTTCTCATTCAGCGAGAA+AGG 0.445696 5_3:+46682369 Msa0814490:CDS
TACAATTTGGTTTGTTGCAG+GGG 0.447783 5_3:+46682531 Msa0814490:CDS
ATACAATTTGGTTTGTTGCA+GGG 0.448167 5_3:+46682530 Msa0814490:CDS
GTTAAAGCATTAGTAAAAGT+TGG 0.448744 5_3:+46681555 Msa0814490:CDS
CGTCCATTGCTTGAGAAGAA+AGG 0.451927 5_3:-46683832 None:intergenic
ACCGTCCTTTGCTGCCCTCA+GGG 0.452215 5_3:-46684468 None:intergenic
AGCTTCAGCTGCATTGGTCG+CGG 0.454740 5_3:-46685515 None:intergenic
CGCTATTGCTGGAGAGGCTG+GGG 0.455527 5_3:+46683807 Msa0814490:CDS
ATTTGCCTAAAGATCAGAAC+AGG 0.460662 5_3:+46684705 Msa0814490:CDS
GTTCCTTTCTTCTCAAGCAA+TGG 0.462270 5_3:+46683829 Msa0814490:CDS
GTCACGATTACTTCGATAAC+GGG 0.463595 5_3:+46684909 Msa0814490:CDS
CCATCTTATTCCGCCCAAAT+CGG 0.466670 5_3:-46685294 None:intergenic
TTCTTCGACATATGCAGTGT+TGG 0.468683 5_3:+46685420 Msa0814490:three_prime_UTR
ATTCTTTCATGGCTGCTTGG+AGG 0.469513 5_3:+46679838 None:intergenic
TACAAGTGCTCCTGTCGATA+AGG 0.469949 5_3:+46682465 Msa0814490:CDS
TGCCAGACTTGATGTTTGCA+TGG 0.470849 5_3:+46684748 Msa0814490:CDS
TCCCATGCAAACATCAAGTC+TGG 0.470937 5_3:-46684750 None:intergenic
TGATGTTTGCATGGGAGGTC+GGG 0.471553 5_3:+46684757 Msa0814490:CDS
AAGCATTAGTAAAAGTTGGC+AGG 0.472384 5_3:+46681559 Msa0814490:CDS
CCGATTTGGGCGGAATAAGA+TGG 0.472829 5_3:+46685294 Msa0814490:three_prime_UTR
GATGGTTTCAAACAAAATGA+AGG 0.474363 5_3:+46684036 Msa0814490:CDS
GTAAAGTTCTTTAAGAGAAG+AGG 0.480218 5_3:-46681448 None:intergenic
CTCTCCCGAGTCAATAGATA+AGG 0.481093 5_3:+46684083 Msa0814490:CDS
CTCTAAATCATGTGTGCTCA+CGG 0.481334 5_3:-46684498 None:intergenic
GCGCTATTGCTGGAGAGGCT+GGG 0.487223 5_3:+46683806 Msa0814490:CDS
TTAAAGCAACTTCTCTGGCC+AGG 0.489804 5_3:+46684840 Msa0814490:CDS
GTCGGAGAACCAACAAAAGA+TGG 0.491626 5_3:+46682430 Msa0814490:CDS
TTGATGTTTGCATGGGAGGT+CGG 0.491938 5_3:+46684756 Msa0814490:CDS
GAAGTATGAGCTCAGAAACT+AGG 0.492327 5_3:+46684933 Msa0814490:CDS
TTGGATAGTCATTAAAAGAG+TGG 0.492362 5_3:+46685212 Msa0814490:three_prime_UTR
GGAACAGAATTATGTAGAGA+AGG 0.492840 5_3:-46685369 None:intergenic
AAGGAAGAGAGTAGTATAAG+TGG 0.493469 5_3:+46682388 Msa0814490:CDS
TCGAAGTAATCGTGACTGAC+GGG 0.496323 5_3:-46684902 None:intergenic
ACAGAATTCTTATGCAGAGA+TGG 0.497571 5_3:-46681516 None:intergenic
TATTCTAACCACCCATCAAA+AGG 0.498742 5_3:+46685015 Msa0814490:CDS
GCACTGGAGAAGATTATAAT+GGG 0.498763 5_3:+46684524 Msa0814490:CDS
GTTTGCCACCAAGACAAGTA+AGG 0.501389 5_3:-46683726 None:intergenic
CAGGCAACTATTGTTCCTCA+TGG 0.509033 5_3:+46684659 Msa0814490:CDS
AGGTTCAGCTTCAGCTGCAT+TGG 0.514430 5_3:-46685521 None:intergenic
TTAGTTGCAATTTATACTGA+TGG 0.514520 5_3:+46684620 Msa0814490:CDS
CTAAGGCATGGCCACACTCA+TGG 0.515161 5_3:-46684601 None:intergenic
TGCTGCCCTGAGGGCAGCAA+AGG 0.515379 5_3:+46684463 Msa0814490:CDS
GCCCTGAGGGCAGCAAAGGA+CGG 0.515401 5_3:+46684467 Msa0814490:CDS
TTAAAGATTTACTTGCAAAT+GGG 0.515899 5_3:+46685095 Msa0814490:CDS
CAGCGCCTTACTTGTCTTGG+TGG 0.520147 5_3:+46683721 Msa0814490:intron
CTTGTTGAAGTGAAGAATAG+AGG 0.521177 5_3:-46685391 None:intergenic
AATGAAGGCATAATTGTGAT+TGG 0.521492 5_3:+46684051 Msa0814490:CDS
TTTAGTACTTGTCTCTACAC+TGG 0.523834 5_3:-46682751 None:intergenic
GCCAGACTTGATGTTTGCAT+GGG 0.523864 5_3:+46684749 Msa0814490:CDS
TTTCTGAACACTCTACTAAG+AGG 0.524551 5_3:+46681597 Msa0814490:CDS
AAGATTGCTCAGTTTACACC+TGG 0.526268 5_3:+46684404 Msa0814490:CDS
CAGAATTCTTATGCAGAGAT+GGG 0.528298 5_3:-46681515 None:intergenic
GATTTCCTAGATATCTGGAC+TGG 0.530218 5_3:-46681386 None:intergenic
CAAAGCCTTATCTATTGACT+CGG 0.531459 5_3:-46684088 None:intergenic
AGGCAACTATTGTTCCTCAT+GGG 0.531495 5_3:+46684660 Msa0814490:CDS
AATTTATCAATCTGAGGCCG+AGG 0.534387 5_3:+46685453 Msa0814490:three_prime_UTR
AATCCATCAAGCTCGAATGC+AGG 0.537537 5_3:+46679890 Msa0814490:CDS
GAATTTGAAGAGACGATTGT+TGG 0.538552 5_3:+46683856 Msa0814490:CDS
CATGAGGAACAATAGTTGCC+TGG 0.538731 5_3:-46684658 None:intergenic
CTTGGTGGCAAACTCCCAAA+AGG 0.541354 5_3:+46683736 Msa0814490:CDS
CATTATAATTTATCAATCTG+AGG 0.541432 5_3:+46685447 Msa0814490:three_prime_UTR
ATTGATGATATGTGATGGAA+TGG 0.541468 5_3:+46685153 Msa0814490:CDS
GGTTAATATTGCTGCCCTGA+GGG 0.542120 5_3:+46684454 Msa0814490:CDS
TTTAATGACTATCCAAACAA+TGG 0.544106 5_3:-46685205 None:intergenic
ATTAAAAGAGTGGAATGGAA+TGG 0.547285 5_3:+46685222 Msa0814490:three_prime_UTR
TCATGGGGAGTCTCGTGGCA+GGG 0.550550 5_3:+46684676 Msa0814490:CDS
ATATCTAGTAACCATTTGCC+TGG 0.551309 5_3:-46684858 None:intergenic
AATGCAGCAACCTTATCGAC+AGG 0.552427 5_3:-46682475 None:intergenic
AGACTTGATGTTTGCATGGG+AGG 0.552431 5_3:+46684752 Msa0814490:CDS
GCTTTCATATGCTCTAATCA+CGG 0.554866 5_3:-46681490 None:intergenic
GTTTGTGGCATCTGAAGCCT+CGG 0.557506 5_3:-46685470 None:intergenic
TCAAACTTCTTAGGTATGAG+TGG 0.557616 5_3:+46685546 Msa0814490:three_prime_UTR
AGCAAAATGAGTGTAAGTGA+TGG 0.559475 5_3:-46685265 None:intergenic
GATAAGGCTTTGTTGAGACA+TGG 0.561242 5_3:+46684099 Msa0814490:CDS
TTCCTCTTGATATGTGGTGT+AGG 0.563915 5_3:+46682556 Msa0814490:CDS
GGGGCCTTCCTCTTGATATG+TGG 0.564222 5_3:+46682550 Msa0814490:CDS
TGATTACCTAAAAGATCCTA+AGG 0.564376 5_3:+46682827 Msa0814490:CDS
GGAGCTTCATCTGCTTGCAA+AGG 0.564622 5_3:+46685036 Msa0814490:CDS
TGTTGGTGTTGGTGCACAAA+GGG 0.568480 5_3:+46683873 Msa0814490:CDS
AGTCACGATTACTTCGATAA+CGG 0.569236 5_3:+46684908 Msa0814490:CDS
GATGAGATTGATGCTATTGG+CGG 0.572769 5_3:+46683949 Msa0814490:CDS
ACTAAATTTAGCGATGTGAA+AGG 0.574466 5_3:+46682768 Msa0814490:CDS
TATGGTATGAGTACTGAAGT+TGG 0.576069 5_3:+46684878 Msa0814490:CDS
GTCACGTGTAGTCAAAGCTA+AGG 0.578881 5_3:+46685120 Msa0814490:CDS
TTTGGAATCTCACATGTCAA+AGG 0.582178 5_3:+46684179 Msa0814490:CDS
GAAGAGACGATTGTTGGTGT+TGG 0.584279 5_3:+46683862 Msa0814490:CDS
TTAGTACTTGTCTCTACACT+GGG 0.586230 5_3:-46682750 None:intergenic
TAGTCATTAAAAGAGTGGAA+TGG 0.586263 5_3:+46685217 Msa0814490:three_prime_UTR
TGGTGCGAATCCTGTTCACC+AGG 0.588541 5_3:+46684640 Msa0814490:CDS
ATTTCCTAGATATCTGGACT+GGG 0.590427 5_3:-46681385 None:intergenic
CATACCTAAGAAGTTTGAGA+AGG 0.591374 5_3:-46685541 None:intergenic
CAATATTAACCAAGTTTGCA+AGG 0.592799 5_3:-46684442 None:intergenic
TCGGAGAACCAACAAAAGAT+GGG 0.593694 5_3:+46682431 Msa0814490:CDS
CAAGTCAGTTGTTATATCTG+AGG 0.594506 5_3:+46684556 Msa0814490:CDS
CTCCTACACCACATATCAAG+AGG 0.594875 5_3:-46682558 None:intergenic
CTTATTCCGCCCAAATCGGA+TGG 0.595359 5_3:-46685290 None:intergenic
TTGTTGAAGTGAAGAATAGA+GGG 0.595631 5_3:-46685390 None:intergenic
ATCGAAGTAATCGTGACTGA+CGG 0.598660 5_3:-46684903 None:intergenic
TATAAATTGCAACTAAGGCA+TGG 0.600410 5_3:-46684613 None:intergenic
TTTGGATTGATGATATGTGA+TGG 0.600415 5_3:+46685148 Msa0814490:CDS
ATAAGGCTTTGTTGAGACAT+GGG 0.601738 5_3:+46684100 Msa0814490:CDS
GCTTCAGATGAATCGCGTAG+TGG 0.601859 5_3:-46681417 None:intergenic
ACATGATTTAGAGTTCGCAC+TGG 0.603698 5_3:+46684508 Msa0814490:CDS
TCATCAATAAAGATTATACA+AGG 0.608650 5_3:-46683931 None:intergenic
GTTGCAGCTCTTATAAATGT+CGG 0.609993 5_3:+46682412 Msa0814490:CDS
CGATGTGAAAGGTGTAGATG+AGG 0.614088 5_3:+46682779 Msa0814490:CDS
CAATACGATACAGGTTCTGA+AGG 0.615787 5_3:+46684361 Msa0814490:intron
CTGGATTGGGAACAACAACA+TGG 0.618453 5_3:-46684134 None:intergenic
TGGTTAATATTGCTGCCCTG+AGG 0.618865 5_3:+46684453 Msa0814490:CDS
GTTCCTCATGGGGAGTCTCG+TGG 0.619091 5_3:+46684671 Msa0814490:CDS
TGGCACCGGTAAAACAATGT+TGG 0.623177 5_3:+46683780 Msa0814490:CDS
GAATTATGTAGAGAAGGTAA+GGG 0.625145 5_3:-46685363 None:intergenic
GGTGAGCGCTATTGCTGGAG+AGG 0.626219 5_3:+46683801 Msa0814490:CDS
TTGTTGGTGTTGGTGCACAA+AGG 0.629062 5_3:+46683872 Msa0814490:CDS
TACACCACATATCAAGAGGA+AGG 0.629685 5_3:-46682554 None:intergenic
TGATATGTGATGGAATGGAA+TGG 0.629685 5_3:+46685158 Msa0814490:CDS
GAAAGGTGTAGATGAGGCTA+AGG 0.630293 5_3:+46682785 Msa0814490:CDS
ACGCGATTCATCTGAAGCAG+AGG 0.632043 5_3:+46681422 Msa0814490:CDS
AAAGCCTTATCTATTGACTC+GGG 0.633995 5_3:-46684087 None:intergenic
GCGTCAATCTGAATTTGTGA+AGG 0.636953 5_3:+46681046 Msa0814490:CDS
TGCTTACCATCCGATTTGGG+CGG 0.639738 5_3:+46685284 Msa0814490:three_prime_UTR
AAGACTGCTTTCCATGAGTG+TGG 0.644163 5_3:+46684590 Msa0814490:CDS
TGGAATGGAATGGAACTCAA+TGG 0.648149 5_3:+46685232 Msa0814490:three_prime_UTR
ATCTCTGCATAAGAATTCTG+TGG 0.650157 5_3:+46681518 Msa0814490:CDS
CCAATCCAGATGTAAAAGGA+CGG 0.652622 5_3:+46684148 Msa0814490:CDS
AGATTGCTCAGTTTACACCT+GGG 0.655104 5_3:+46684405 Msa0814490:CDS
GGCAACTATTGTTCCTCATG+GGG 0.655368 5_3:+46684661 Msa0814490:CDS
CTTCTTAGGTATGAGTGGAG+TGG 0.657949 5_3:+46685551 Msa0814490:three_prime_UTR
GTGTATAAAGGAATTAACAC+AGG 0.680099 5_3:+46682589 Msa0814490:CDS
AGGTCAGCACCAGAGAACCC+AGG 0.693794 5_3:-46684422 None:intergenic
CTGCCACGAGACTCCCCATG+AGG 0.695426 5_3:-46684674 None:intergenic
CTTGATGGATTGAAGAAGTG+AGG 0.699565 5_3:-46679878 None:intergenic
GATGGATTGAAGAAGTGAGG+TGG 0.717287 5_3:-46679875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATAGAAAGAAAAAAAA+AGG - chr5_3:46682708-46682727 None:intergenic 10.0%
!!! ATAAGTTGAAAAAAGTTTTA+TGG + chr5_3:46680206-46680225 Msa0814490:intron 15.0%
!! TTAAATAGTATCAATTGTTT+CGG + chr5_3:46680810-46680829 Msa0814490:intron 15.0%
!! TAACAGCATAAAAAATAAAA+AGG - chr5_3:46683536-46683555 None:intergenic 15.0%
!! TATAATATAACTTGAAAAGT+AGG - chr5_3:46683627-46683646 None:intergenic 15.0%
!! TAAATTAAAATTCCATTGTT+TGG + chr5_3:46685193-46685212 Msa0814490:exon 15.0%
!! AGCAAATTTCAATACATATA+GGG + chr5_3:46680077-46680096 Msa0814490:intron 20.0%
!! TTTGATAAACAACTTATTTG+CGG + chr5_3:46680110-46680129 Msa0814490:intron 20.0%
!! AATAAGCTATTTATCCAAAT+AGG - chr5_3:46680339-46680358 None:intergenic 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr5_3:46680516-46680535 None:intergenic 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + chr5_3:46680642-46680661 Msa0814490:intron 20.0%
!!! AAAATCAATAATAGTTTGCT+AGG - chr5_3:46681309-46681328 None:intergenic 20.0%
!!! TTGATTTTAGATATTTCTTG+TGG + chr5_3:46681321-46681340 Msa0814490:intron 20.0%
!!! ATTGATCGTAATATTTTGTT+GGG + chr5_3:46682083-46682102 Msa0814490:intron 20.0%
!! CTTAGATCTATATAAGATTA+TGG - chr5_3:46682197-46682216 None:intergenic 20.0%
!! AATCTTATATAGATCTAAGT+TGG + chr5_3:46682198-46682217 Msa0814490:intron 20.0%
!!! GAGAAGTTTTATTATTCTTT+GGG + chr5_3:46682977-46682996 Msa0814490:intron 20.0%
!!! AACTTTTACTTATTTCTGTT+TGG - chr5_3:46683073-46683092 None:intergenic 20.0%
!! AGAAATAAGTAAAAGTTGTT+GGG + chr5_3:46683076-46683095 Msa0814490:intron 20.0%
!! AAGAGAACAGAAAAAAAATA+AGG - chr5_3:46683460-46683479 None:intergenic 20.0%
!! AAATACATCATAGATTTCAA+AGG - chr5_3:46683595-46683614 None:intergenic 20.0%
!! TCATCAATAAAGATTATACA+AGG - chr5_3:46683934-46683953 None:intergenic 20.0%
!! ACTCTTGAAAAATATTATCT+TGG + chr5_3:46684211-46684230 Msa0814490:intron 20.0%
!! CTCTTGAAAAATATTATCTT+GGG + chr5_3:46684212-46684231 Msa0814490:intron 20.0%
!!! CACAATTTTGAGATATATTA+AGG + chr5_3:46684275-46684294 Msa0814490:intron 20.0%
!! ATTAAAGATTTACTTGCAAA+TGG + chr5_3:46685094-46685113 Msa0814490:CDS 20.0%
!! TTAAAGATTTACTTGCAAAT+GGG + chr5_3:46685095-46685114 Msa0814490:CDS 20.0%
!! CATTATAATTTATCAATCTG+AGG + chr5_3:46685447-46685466 Msa0814490:three_prime_UTR 20.0%
! GAGCAAATTTCAATACATAT+AGG + chr5_3:46680076-46680095 Msa0814490:intron 25.0%
! ATCCAAACAAACCATATATA+TGG + chr5_3:46680313-46680332 Msa0814490:intron 25.0%
! CATATACAAAAAACAGTTTG+AGG - chr5_3:46680450-46680469 None:intergenic 25.0%
!!! TAAGTTTTGTAAGACTGTTT+GGG - chr5_3:46680733-46680752 None:intergenic 25.0%
!!! ATAAGTTTTGTAAGACTGTT+TGG - chr5_3:46680734-46680753 None:intergenic 25.0%
! TTTAATAGTCAATTCCACTA+TGG - chr5_3:46680795-46680814 None:intergenic 25.0%
! ATATTCTTGGTATACTAATC+AGG + chr5_3:46680874-46680893 Msa0814490:intron 25.0%
!!! ATCTTATAAGTTATTTTCGC+AGG + chr5_3:46681016-46681035 Msa0814490:intron 25.0%
! CATAAGTTTGAAAAGTTTGA+AGG + chr5_3:46681104-46681123 Msa0814490:CDS 25.0%
! ACTTACTCTCAAATTTATGT+AGG + chr5_3:46681345-46681364 Msa0814490:intron 25.0%
! CTTACTCTCAAATTTATGTA+GGG + chr5_3:46681346-46681365 Msa0814490:intron 25.0%
!! GTTAAAGCATTAGTAAAAGT+TGG + chr5_3:46681555-46681574 Msa0814490:CDS 25.0%
!! CATTGATCGTAATATTTTGT+TGG + chr5_3:46682082-46682101 Msa0814490:intron 25.0%
!! TTGATCGTAATATTTTGTTG+GGG + chr5_3:46682084-46682103 Msa0814490:intron 25.0%
! ATCATAAAACTTGCATTTCA+AGG + chr5_3:46682140-46682159 Msa0814490:intron 25.0%
! AAATATGTAATCAACGAGAT+TGG - chr5_3:46682949-46682968 None:intergenic 25.0%
! AAGAATAATAAAACTTCTCG+TGG - chr5_3:46682976-46682995 None:intergenic 25.0%
!!! CGAGAAGTTTTATTATTCTT+TGG + chr5_3:46682976-46682995 Msa0814490:intron 25.0%
! TGAACACTATTTCATAACTT+TGG - chr5_3:46683018-46683037 None:intergenic 25.0%
! CAGAAATAAGTAAAAGTTGT+TGG + chr5_3:46683075-46683094 Msa0814490:intron 25.0%
! TGAAAAATATTATCTTGGGT+TGG + chr5_3:46684216-46684235 Msa0814490:intron 25.0%
!! TTTGAGATATATTAAGGTTC+TGG + chr5_3:46684281-46684300 Msa0814490:intron 25.0%
! TAGAATTGTTAGAACTTAGA+AGG + chr5_3:46684308-46684327 Msa0814490:intron 25.0%
! ATCAGTATAAATTGCAACTA+AGG - chr5_3:46684621-46684640 None:intergenic 25.0%
! TTAGTTGCAATTTATACTGA+TGG + chr5_3:46684620-46684639 Msa0814490:CDS 25.0%
! TTTAATGACTATCCAAACAA+TGG - chr5_3:46685208-46685227 None:intergenic 25.0%
TTGAATTTGATCATGCACTA+AGG + chr5_3:46679946-46679965 Msa0814490:intron 30.0%
AACCATATATATGGCCTATT+TGG + chr5_3:46680322-46680341 Msa0814490:intron 30.0%
ATCCAAATAGGCCATATATA+TGG - chr5_3:46680327-46680346 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr5_3:46680547-46680566 Msa0814490:intron 30.0%
GAAAATAAGCTGAAAAAAGC+TGG + chr5_3:46680674-46680693 Msa0814490:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr5_3:46680768-46680787 Msa0814490:intron 30.0%
CAAATAAGTCAATCCAAACA+GGG + chr5_3:46680769-46680788 Msa0814490:intron 30.0%
! GCGTCAATTTTGAATATTCT+TGG + chr5_3:46680861-46680880 Msa0814490:intron 30.0%
AACATAACATGCAGTAAATG+CGG - chr5_3:46681160-46681179 None:intergenic 30.0%
ATGAAACACATGGTGAAAAT+AGG - chr5_3:46681283-46681302 None:intergenic 30.0%
CTCAAATTTATGTAGGGAAT+AGG + chr5_3:46681352-46681371 Msa0814490:intron 30.0%
! GTAAAGTTCTTTAAGAGAAG+AGG - chr5_3:46681451-46681470 None:intergenic 30.0%
ATTAGAATGTCCGCAAAATA+TGG - chr5_3:46681694-46681713 None:intergenic 30.0%
GAACCTCAAATAATAACACT+CGG - chr5_3:46681897-46681916 None:intergenic 30.0%
TTCATTTGCATATTGCCAAA+TGG + chr5_3:46682037-46682056 Msa0814490:intron 30.0%
TAAAACTTGCATTTCAAGGA+TGG + chr5_3:46682144-46682163 Msa0814490:intron 30.0%
AAAACTTGCATTTCAAGGAT+GGG + chr5_3:46682145-46682164 Msa0814490:intron 30.0%
AGGATGGGATAATTAAATGA+TGG + chr5_3:46682160-46682179 Msa0814490:intron 30.0%
AAAATTTCAAAGCGCAACTA+TGG + chr5_3:46682506-46682525 Msa0814490:CDS 30.0%
!! ATACAATTTGGTTTGTTGCA+GGG + chr5_3:46682530-46682549 Msa0814490:CDS 30.0%
GTGTATAAAGGAATTAACAC+AGG + chr5_3:46682589-46682608 Msa0814490:CDS 30.0%
ACTAAATTTAGCGATGTGAA+AGG + chr5_3:46682768-46682787 Msa0814490:CDS 30.0%
TGATTACCTAAAAGATCCTA+AGG + chr5_3:46682827-46682846 Msa0814490:CDS 30.0%
TTACTTATTCAGTCCAACTA+AGG - chr5_3:46683203-46683222 None:intergenic 30.0%
GCTTATTGCTAATAAACGTA+AGG + chr5_3:46683234-46683253 Msa0814490:intron 30.0%
GTGGTAAAAAAAGTAGAAAG+TGG + chr5_3:46683285-46683304 Msa0814490:intron 30.0%
!!! TTTTTTTCAAGACCACATTC+TGG + chr5_3:46683652-46683671 Msa0814490:intron 30.0%
AAGATAGTACAGAACTAAAC+AGG - chr5_3:46683678-46683697 None:intergenic 30.0%
! CATAAAGCAAAACACCTTTT+GGG - chr5_3:46683753-46683772 None:intergenic 30.0%
ATTGATGAGATTGATGCTAT+TGG + chr5_3:46683946-46683965 Msa0814490:CDS 30.0%
TACATTTGGTCGTTTGAATT+TGG - chr5_3:46683979-46683998 None:intergenic 30.0%
GATGGTTTCAAACAAAATGA+AGG + chr5_3:46684036-46684055 Msa0814490:CDS 30.0%
! AATGAAGGCATAATTGTGAT+TGG + chr5_3:46684051-46684070 Msa0814490:CDS 30.0%
!! AAATATTATCTTGGGTTGGA+TGG + chr5_3:46684220-46684239 Msa0814490:intron 30.0%
!!! GATGGCTTAAGAATTTTTTG+AGG + chr5_3:46684238-46684257 Msa0814490:intron 30.0%
CAATATTAACCAAGTTTGCA+AGG - chr5_3:46684445-46684464 None:intergenic 30.0%
TATAAATTGCAACTAAGGCA+TGG - chr5_3:46684616-46684635 None:intergenic 30.0%
! TTTGGATTGATGATATGTGA+TGG + chr5_3:46685148-46685167 Msa0814490:CDS 30.0%
! ATTGATGATATGTGATGGAA+TGG + chr5_3:46685153-46685172 Msa0814490:CDS 30.0%
TTGGATAGTCATTAAAAGAG+TGG + chr5_3:46685212-46685231 Msa0814490:three_prime_UTR 30.0%
TAGTCATTAAAAGAGTGGAA+TGG + chr5_3:46685217-46685236 Msa0814490:three_prime_UTR 30.0%
ATTAAAAGAGTGGAATGGAA+TGG + chr5_3:46685222-46685241 Msa0814490:three_prime_UTR 30.0%
GAATTATGTAGAGAAGGTAA+GGG - chr5_3:46685366-46685385 None:intergenic 30.0%
AGAATTATGTAGAGAAGGTA+AGG - chr5_3:46685367-46685386 None:intergenic 30.0%
TTGTTGAAGTGAAGAATAGA+GGG - chr5_3:46685393-46685412 None:intergenic 30.0%
ACCTTATCGAAAAACAGAAT+TGG + chr5_3:46685609-46685628 Msa0814490:three_prime_UTR 30.0%
!! TCCAATTCTGTTTTTCGATA+AGG - chr5_3:46685613-46685632 None:intergenic 30.0%
ACTGAAACAGTAGTGATACA+TGG - chr5_3:46680043-46680062 None:intergenic 35.0%
ATCACTACTGTTTCAGTTTC+TGG + chr5_3:46680046-46680065 Msa0814490:intron 35.0%
!! GGCCATATATATGGTTTGTT+TGG - chr5_3:46680318-46680337 None:intergenic 35.0%
CATGATAAACGCTTATGCAT+AGG + chr5_3:46680386-46680405 Msa0814490:intron 35.0%
ATGCTATAAGCTATGAAGCA+CGG + chr5_3:46680467-46680486 Msa0814490:intron 35.0%
AACATATAGCCTATGAAGCA+CGG - chr5_3:46680625-46680644 None:intergenic 35.0%
!! TTCGGTACTGGTATCATAAT+TGG + chr5_3:46680917-46680936 Msa0814490:intron 35.0%
TACAACGCAGAGATAGAAAT+TGG - chr5_3:46680969-46680988 None:intergenic 35.0%
!! AGTTATTTTCGCAGGTTGAA+AGG + chr5_3:46681024-46681043 Msa0814490:intron 35.0%
ATTTCCTAGATATCTGGACT+GGG - chr5_3:46681388-46681407 None:intergenic 35.0%
GCTTTCATATGCTCTAATCA+CGG - chr5_3:46681493-46681512 None:intergenic 35.0%
CAGAATTCTTATGCAGAGAT+GGG - chr5_3:46681518-46681537 None:intergenic 35.0%
ACAGAATTCTTATGCAGAGA+TGG - chr5_3:46681519-46681538 None:intergenic 35.0%
ATCTCTGCATAAGAATTCTG+TGG + chr5_3:46681518-46681537 Msa0814490:CDS 35.0%
AAGCATTAGTAAAAGTTGGC+AGG + chr5_3:46681559-46681578 Msa0814490:CDS 35.0%
TTTCTGAACACTCTACTAAG+AGG + chr5_3:46681597-46681616 Msa0814490:CDS 35.0%
! CTCTGTTTGACCATATTTTG+CGG + chr5_3:46681681-46681700 Msa0814490:intron 35.0%
GGACATTCTAATTCTGTTCA+AGG + chr5_3:46681702-46681721 Msa0814490:intron 35.0%
! CTGATTTGATTAGAAAGCTG+AGG + chr5_3:46681782-46681801 Msa0814490:intron 35.0%
! TGCCTTCAGTCTTTTTACTT+GGG - chr5_3:46681839-46681858 None:intergenic 35.0%
AAGTAAAAAGACTGAAGGCA+CGG + chr5_3:46681839-46681858 Msa0814490:intron 35.0%
! ATGCCGAGTGTTATTATTTG+AGG + chr5_3:46681891-46681910 Msa0814490:intron 35.0%
GATCAATGCTACCACATAAA+TGG - chr5_3:46682070-46682089 None:intergenic 35.0%
AGTCTGCAGAATTCAAAACT+TGG + chr5_3:46682221-46682240 Msa0814490:intron 35.0%
CTCAGGTTATAACTTGAGAT+CGG - chr5_3:46682332-46682351 None:intergenic 35.0%
TATTTCTCATTCAGCGAGAA+AGG + chr5_3:46682369-46682388 Msa0814490:CDS 35.0%
AAGGAAGAGAGTAGTATAAG+TGG + chr5_3:46682388-46682407 Msa0814490:CDS 35.0%
GTTGCAGCTCTTATAAATGT+CGG + chr5_3:46682412-46682431 Msa0814490:CDS 35.0%
!! CATACAATTTGGTTTGTTGC+AGG + chr5_3:46682529-46682548 Msa0814490:CDS 35.0%
!! TACAATTTGGTTTGTTGCAG+GGG + chr5_3:46682531-46682550 Msa0814490:CDS 35.0%
TTAGTACTTGTCTCTACACT+GGG - chr5_3:46682753-46682772 None:intergenic 35.0%
TTTAGTACTTGTCTCTACAC+TGG - chr5_3:46682754-46682773 None:intergenic 35.0%
! AGTCTACCTTAGGATCTTTT+AGG - chr5_3:46682836-46682855 None:intergenic 35.0%
AATACAAGTAAGAGAGAGCA+TGG - chr5_3:46682873-46682892 None:intergenic 35.0%
!! GTTTTATTATTCTTTGGGCG+TGG + chr5_3:46682982-46683001 Msa0814490:intron 35.0%
GGAGACATATAGAAAACCTA+AGG - chr5_3:46683169-46683188 None:intergenic 35.0%
CCAACTAAGGTAAAATGACA+AGG - chr5_3:46683190-46683209 None:intergenic 35.0%
!!! CCTTGTCATTTTACCTTAGT+TGG + chr5_3:46683187-46683206 Msa0814490:intron 35.0%
AAACCCAAAACAAATTCTGC+CGG + chr5_3:46683318-46683337 Msa0814490:intron 35.0%
GAGAAAAAGAAATGAGAGTC+CGG - chr5_3:46683340-46683359 None:intergenic 35.0%
AGCAGCATTTGAAAGTTTGA+AGG - chr5_3:46683372-46683391 None:intergenic 35.0%
! CCATAAAGCAAAACACCTTT+TGG - chr5_3:46683754-46683773 None:intergenic 35.0%
!!! CCAAAAGGTGTTTTGCTTTA+TGG + chr5_3:46683751-46683770 Msa0814490:CDS 35.0%
GAATTTGAAGAGACGATTGT+TGG + chr5_3:46683856-46683875 Msa0814490:CDS 35.0%
AAGTCAACTTCACGTACATT+TGG - chr5_3:46683993-46684012 None:intergenic 35.0%
!! AAAGCCTTATCTATTGACTC+GGG - chr5_3:46684090-46684109 None:intergenic 35.0%
! CAAAGCCTTATCTATTGACT+CGG - chr5_3:46684091-46684110 None:intergenic 35.0%
!! ATAAGGCTTTGTTGAGACAT+GGG + chr5_3:46684100-46684119 Msa0814490:CDS 35.0%
! TTTGGAATCTCACATGTCAA+AGG + chr5_3:46684179-46684198 Msa0814490:CDS 35.0%
TTCTTACTCCAATACGATAC+AGG + chr5_3:46684352-46684371 Msa0814490:intron 35.0%
GCACTGGAGAAGATTATAAT+GGG + chr5_3:46684524-46684543 Msa0814490:CDS 35.0%
CAAGTCAGTTGTTATATCTG+AGG + chr5_3:46684556-46684575 Msa0814490:CDS 35.0%
ATTTGCCTAAAGATCAGAAC+AGG + chr5_3:46684705-46684724 Msa0814490:CDS 35.0%
! GTTGCTGAAGAGCTAATTTT+CGG + chr5_3:46684779-46684798 Msa0814490:CDS 35.0%
ATATCTAGTAACCATTTGCC+TGG - chr5_3:46684861-46684880 None:intergenic 35.0%
AGGCAAATGGTTACTAGATA+TGG + chr5_3:46684860-46684879 Msa0814490:CDS 35.0%
!! TATGGTATGAGTACTGAAGT+TGG + chr5_3:46684878-46684897 Msa0814490:CDS 35.0%
AGTCACGATTACTTCGATAA+CGG + chr5_3:46684908-46684927 Msa0814490:CDS 35.0%
TATTCTAACCACCCATCAAA+AGG + chr5_3:46685015-46685034 Msa0814490:CDS 35.0%
! TGATATGTGATGGAATGGAA+TGG + chr5_3:46685158-46685177 Msa0814490:CDS 35.0%
AGCAAAATGAGTGTAAGTGA+TGG - chr5_3:46685268-46685287 None:intergenic 35.0%
! ATTTTGCTTACCATCCGATT+TGG + chr5_3:46685280-46685299 Msa0814490:three_prime_UTR 35.0%
! TTTTGCTTACCATCCGATTT+GGG + chr5_3:46685281-46685300 Msa0814490:three_prime_UTR 35.0%
GGAACAGAATTATGTAGAGA+AGG - chr5_3:46685372-46685391 None:intergenic 35.0%
CTTGTTGAAGTGAAGAATAG+AGG - chr5_3:46685394-46685413 None:intergenic 35.0%
TGAACCTTCTCAAACTTCTT+AGG + chr5_3:46685537-46685556 Msa0814490:three_prime_UTR 35.0%
CATACCTAAGAAGTTTGAGA+AGG - chr5_3:46685544-46685563 None:intergenic 35.0%
TCAAACTTCTTAGGTATGAG+TGG + chr5_3:46685546-46685565 Msa0814490:three_prime_UTR 35.0%
!! CTGTTTTTCGATAAGGTGAA+CGG - chr5_3:46685606-46685625 None:intergenic 35.0%
!! CTTGATGGATTGAAGAAGTG+AGG - chr5_3:46679881-46679900 None:intergenic 40.0%
TTGCGGCTTATAAGCTCATA+CGG + chr5_3:46680127-46680146 Msa0814490:intron 40.0%
TAAGCTATGAAGCACGGATA+CGG + chr5_3:46680473-46680492 Msa0814490:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr5_3:46680553-46680572 Msa0814490:intron 40.0%
TCTTGGTATACTAATCAGGC+AGG + chr5_3:46680878-46680897 Msa0814490:intron 40.0%
GGCATGTTAACTCGACATTT+CGG + chr5_3:46680899-46680918 Msa0814490:intron 40.0%
TTAACTCGACATTTCGGTAC+TGG + chr5_3:46680905-46680924 Msa0814490:intron 40.0%
GCGTCAATCTGAATTTGTGA+AGG + chr5_3:46681046-46681065 Msa0814490:CDS 40.0%
ACATGCAGTAAATGCGGTAA+GGG - chr5_3:46681154-46681173 None:intergenic 40.0%
AACATGCAGTAAATGCGGTA+AGG - chr5_3:46681155-46681174 None:intergenic 40.0%
TGCTAGGTACATGAAACACA+TGG - chr5_3:46681293-46681312 None:intergenic 40.0%
GATTTCCTAGATATCTGGAC+TGG - chr5_3:46681389-46681408 None:intergenic 40.0%
GTCCAGATATCTAGGAAATC+TGG + chr5_3:46681389-46681408 Msa0814490:CDS 40.0%
TGCCAGATTTCCTAGATATC+TGG - chr5_3:46681394-46681413 None:intergenic 40.0%
! TGTGTCTAGTTTCCTGATCA+GGG - chr5_3:46681743-46681762 None:intergenic 40.0%
! ATGTGTCTAGTTTCCTGATC+AGG - chr5_3:46681744-46681763 None:intergenic 40.0%
ATTGCTACTCTGCCTAATCA+TGG + chr5_3:46681807-46681826 Msa0814490:intron 40.0%
! GCCTTCAGTCTTTTTACTTG+GGG - chr5_3:46681838-46681857 None:intergenic 40.0%
! GTGCCTTCAGTCTTTTTACT+TGG - chr5_3:46681840-46681859 None:intergenic 40.0%
TCTCATTTCCCAAAAACCAG+TGG + chr5_3:46681988-46682007 Msa0814490:intron 40.0%
!!! AGAGACTTCCACTGGTTTTT+GGG - chr5_3:46681999-46682018 None:intergenic 40.0%
AAAAACCAGTGGAAGTCTCT+GGG + chr5_3:46681999-46682018 Msa0814490:intron 40.0%
ATAAATGGCCTGTAGCCATT+TGG - chr5_3:46682055-46682074 None:intergenic 40.0%
CGATCTCAAGTTATAACCTG+AGG + chr5_3:46682330-46682349 Msa0814490:intron 40.0%
GCTGAAAATTCATATGCCTC+AGG - chr5_3:46682349-46682368 None:intergenic 40.0%
TCGGAGAACCAACAAAAGAT+GGG + chr5_3:46682431-46682450 Msa0814490:CDS 40.0%
! CCAAGAATCCCATCTTTTGT+TGG - chr5_3:46682442-46682461 None:intergenic 40.0%
CCAACAAAAGATGGGATTCT+TGG + chr5_3:46682439-46682458 Msa0814490:CDS 40.0%
GATAAGGTTGCTGCATTAGA+AGG + chr5_3:46682481-46682500 Msa0814490:CDS 40.0%
CGCAACTATGGCATACAATT+TGG + chr5_3:46682518-46682537 Msa0814490:CDS 40.0%
TACACCACATATCAAGAGGA+AGG - chr5_3:46682557-46682576 None:intergenic 40.0%
TTCCTCTTGATATGTGGTGT+AGG + chr5_3:46682556-46682575 Msa0814490:CDS 40.0%
ATGCTGGAAAAGTCTACCTT+AGG - chr5_3:46682846-46682865 None:intergenic 40.0%
CAACGAGATTGGAATAGCTT+AGG - chr5_3:46682938-46682957 None:intergenic 40.0%
GGTAATCAGTTCTATTGCTC+TGG + chr5_3:46683097-46683116 Msa0814490:intron 40.0%
TAGCACAGACACTTATCCTT+AGG + chr5_3:46683150-46683169 Msa0814490:intron 40.0%
! TAAACGTAAGGAGAGTGTAG+TGG + chr5_3:46683246-46683265 Msa0814490:intron 40.0%
!! AGTCCGGCAGAATTTGTTTT+GGG - chr5_3:46683324-46683343 None:intergenic 40.0%
!! GCTCACCAACATTGTTTTAC+CGG - chr5_3:46683788-46683807 None:intergenic 40.0%
GTTCCTTTCTTCTCAAGCAA+TGG + chr5_3:46683829-46683848 Msa0814490:CDS 40.0%
GATGAGATTGATGCTATTGG+CGG + chr5_3:46683949-46683968 Msa0814490:CDS 40.0%
! CAGTTGCTTGTTGAGTTAGA+TGG + chr5_3:46684018-46684037 Msa0814490:CDS 40.0%
!! GATAAGGCTTTGTTGAGACA+TGG + chr5_3:46684099-46684118 Msa0814490:CDS 40.0%
GTTCCCAATCCAGATGTAAA+AGG + chr5_3:46684144-46684163 Msa0814490:CDS 40.0%
! CGTCCTTTTACATCTGGATT+GGG - chr5_3:46684150-46684169 None:intergenic 40.0%
CCAATCCAGATGTAAAAGGA+CGG + chr5_3:46684148-46684167 Msa0814490:CDS 40.0%
CTTCAGAACCTGTATCGTAT+TGG - chr5_3:46684363-46684382 None:intergenic 40.0%
! CAATACGATACAGGTTCTGA+AGG + chr5_3:46684361-46684380 Msa0814490:intron 40.0%
AAGATTGCTCAGTTTACACC+TGG + chr5_3:46684404-46684423 Msa0814490:CDS 40.0%
AGATTGCTCAGTTTACACCT+GGG + chr5_3:46684405-46684424 Msa0814490:CDS 40.0%
CTCTAAATCATGTGTGCTCA+CGG - chr5_3:46684501-46684520 None:intergenic 40.0%
! ACATGATTTAGAGTTCGCAC+TGG + chr5_3:46684508-46684527 Msa0814490:CDS 40.0%
CGCACTGGAGAAGATTATAA+TGG + chr5_3:46684523-46684542 Msa0814490:CDS 40.0%
AGGCAACTATTGTTCCTCAT+GGG + chr5_3:46684660-46684679 Msa0814490:CDS 40.0%
! GAGCTAATTTTCGGACAAAG+TGG + chr5_3:46684788-46684807 Msa0814490:CDS 40.0%
GGACAAAGTGGAGTTAATTC+CGG + chr5_3:46684800-46684819 Msa0814490:CDS 40.0%
AAAAAGATCTGAGCATGCAC+CGG - chr5_3:46684822-46684841 None:intergenic 40.0%
ATCGAAGTAATCGTGACTGA+CGG - chr5_3:46684906-46684925 None:intergenic 40.0%
GTCACGATTACTTCGATAAC+GGG + chr5_3:46684909-46684928 Msa0814490:CDS 40.0%
GAAGTATGAGCTCAGAAACT+AGG + chr5_3:46684933-46684952 Msa0814490:CDS 40.0%
! CAGATGAAGCTCCTTTTGAT+GGG - chr5_3:46685029-46685048 None:intergenic 40.0%
GTCAAAGCTAAGGCTATGTT+TGG + chr5_3:46685130-46685149 Msa0814490:CDS 40.0%
TGGAATGGAATGGAACTCAA+TGG + chr5_3:46685232-46685251 Msa0814490:three_prime_UTR 40.0%
TTCTTCGACATATGCAGTGT+TGG + chr5_3:46685420-46685439 Msa0814490:three_prime_UTR 40.0%
! AATTTATCAATCTGAGGCCG+AGG + chr5_3:46685453-46685472 Msa0814490:three_prime_UTR 40.0%
!! GATGGATTGAAGAAGTGAGG+TGG - chr5_3:46679878-46679897 None:intergenic 45.0%
AATCCATCAAGCTCGAATGC+AGG + chr5_3:46679890-46679909 Msa0814490:CDS 45.0%
AAACCTGCATTCGAGCTTGA+TGG - chr5_3:46679896-46679915 None:intergenic 45.0%
AATTCCACTATGGCCCTGTT+TGG - chr5_3:46680785-46680804 None:intergenic 45.0%
TTCTCCCAGTCCAGATATCT+AGG + chr5_3:46681381-46681400 Msa0814490:CDS 45.0%
TATGCTCTAATCACGGCTTC+AGG - chr5_3:46681486-46681505 None:intergenic 45.0%
! TAAGATTTTCCCCCCTGATC+AGG + chr5_3:46681728-46681747 Msa0814490:intron 45.0%
! TGTCTAGTTTCCTGATCAGG+GGG - chr5_3:46681741-46681760 None:intergenic 45.0%
! GTGTCTAGTTTCCTGATCAG+GGG - chr5_3:46681742-46681761 None:intergenic 45.0%
GCCCCAAGTAAAAAGACTGA+AGG + chr5_3:46681834-46681853 Msa0814490:intron 45.0%
!!! CAGAGACTTCCACTGGTTTT+TGG - chr5_3:46682000-46682019 None:intergenic 45.0%
CAAAAACCAGTGGAAGTCTC+TGG + chr5_3:46681998-46682017 Msa0814490:intron 45.0%
ATATACCCAGAGACTTCCAC+TGG - chr5_3:46682007-46682026 None:intergenic 45.0%
AGTGGAAGTCTCTGGGTATA+TGG + chr5_3:46682006-46682025 Msa0814490:intron 45.0%
GCATATTGCCAAATGGCTAC+AGG + chr5_3:46682044-46682063 Msa0814490:intron 45.0%
ATGGCTACAGGCCATTTATG+TGG + chr5_3:46682056-46682075 Msa0814490:intron 45.0%
GTCGGAGAACCAACAAAAGA+TGG + chr5_3:46682430-46682449 Msa0814490:CDS 45.0%
TACAAGTGCTCCTGTCGATA+AGG + chr5_3:46682465-46682484 Msa0814490:CDS 45.0%
AATGCAGCAACCTTATCGAC+AGG - chr5_3:46682478-46682497 None:intergenic 45.0%
CTCCTACACCACATATCAAG+AGG - chr5_3:46682561-46682580 None:intergenic 45.0%
GGAGCTCACATCGTGTATAA+AGG + chr5_3:46682577-46682596 Msa0814490:CDS 45.0%
! CGATGTGAAAGGTGTAGATG+AGG + chr5_3:46682779-46682798 Msa0814490:CDS 45.0%
! GAAAGGTGTAGATGAGGCTA+AGG + chr5_3:46682785-46682804 Msa0814490:CDS 45.0%
! GAGAGAGCATGGATTAATGC+TGG - chr5_3:46682862-46682881 None:intergenic 45.0%
!! GAGTCCGGCAGAATTTGTTT+TGG - chr5_3:46683325-46683344 None:intergenic 45.0%
GAACTAAACAGGCCAGAATG+TGG - chr5_3:46683667-46683686 None:intergenic 45.0%
GTTTGCCACCAAGACAAGTA+AGG - chr5_3:46683729-46683748 None:intergenic 45.0%
!! AACATTGTTTTACCGGTGCC+AGG - chr5_3:46683781-46683800 None:intergenic 45.0%
!! TGGCACCGGTAAAACAATGT+TGG + chr5_3:46683780-46683799 Msa0814490:CDS 45.0%
CGTCCATTGCTTGAGAAGAA+AGG - chr5_3:46683835-46683854 None:intergenic 45.0%
GAAGAGACGATTGTTGGTGT+TGG + chr5_3:46683862-46683881 Msa0814490:CDS 45.0%
!! TTGTTGGTGTTGGTGCACAA+AGG + chr5_3:46683872-46683891 Msa0814490:CDS 45.0%
!! TGTTGGTGTTGGTGCACAAA+GGG + chr5_3:46683873-46683892 Msa0814490:CDS 45.0%
CTCTCCCGAGTCAATAGATA+AGG + chr5_3:46684083-46684102 Msa0814490:CDS 45.0%
! CTGGATTGGGAACAACAACA+TGG - chr5_3:46684137-46684156 None:intergenic 45.0%
! CCGTCCTTTTACATCTGGAT+TGG - chr5_3:46684151-46684170 None:intergenic 45.0%
! AAAAGGACGGCGAGAGATTT+TGG + chr5_3:46684161-46684180 Msa0814490:CDS 45.0%
TGGTTAATATTGCTGCCCTG+AGG + chr5_3:46684453-46684472 Msa0814490:CDS 45.0%
GGTTAATATTGCTGCCCTGA+GGG + chr5_3:46684454-46684473 Msa0814490:CDS 45.0%
AAGACTGCTTTCCATGAGTG+TGG + chr5_3:46684590-46684609 Msa0814490:CDS 45.0%
ACAATAGTTGCCTGGTGAAC+AGG - chr5_3:46684653-46684672 None:intergenic 45.0%
CATGAGGAACAATAGTTGCC+TGG - chr5_3:46684661-46684680 None:intergenic 45.0%
CAGGCAACTATTGTTCCTCA+TGG + chr5_3:46684659-46684678 Msa0814490:CDS 45.0%
GGCAACTATTGTTCCTCATG+GGG + chr5_3:46684661-46684680 Msa0814490:CDS 45.0%
GAGAGCCTGTTCTGATCTTT+AGG - chr5_3:46684713-46684732 None:intergenic 45.0%
TGCCAGACTTGATGTTTGCA+TGG + chr5_3:46684748-46684767 Msa0814490:CDS 45.0%
GCCAGACTTGATGTTTGCAT+GGG + chr5_3:46684749-46684768 Msa0814490:CDS 45.0%
TCCCATGCAAACATCAAGTC+TGG - chr5_3:46684753-46684772 None:intergenic 45.0%
AGACTTGATGTTTGCATGGG+AGG + chr5_3:46684752-46684771 Msa0814490:CDS 45.0%
TTGATGTTTGCATGGGAGGT+CGG + chr5_3:46684756-46684775 Msa0814490:CDS 45.0%
TCGAAGTAATCGTGACTGAC+GGG - chr5_3:46684905-46684924 None:intergenic 45.0%
! ATGAAGCTCCTTTTGATGGG+TGG - chr5_3:46685026-46685045 None:intergenic 45.0%
! GCAGATGAAGCTCCTTTTGA+TGG - chr5_3:46685030-46685049 None:intergenic 45.0%
! CTGAAGCATCACACACTTAC+AGG + chr5_3:46685064-46685083 Msa0814490:CDS 45.0%
GTCACGTGTAGTCAAAGCTA+AGG + chr5_3:46685120-46685139 Msa0814490:CDS 45.0%
CCATCTTATTCCGCCCAAAT+CGG - chr5_3:46685297-46685316 None:intergenic 45.0%
AAACAATGCAGCTGCAGCTT+CGG + chr5_3:46685489-46685508 Msa0814490:three_prime_UTR 45.0%
CTTCTTAGGTATGAGTGGAG+TGG + chr5_3:46685551-46685570 Msa0814490:three_prime_UTR 45.0%
TATGAAGCACGGACACTCCT+CGG - chr5_3:46680614-46680633 None:intergenic 50.0%
CAATCCAAACAGGGCCATAG+TGG + chr5_3:46680778-46680797 Msa0814490:intron 50.0%
GCTTCAGATGAATCGCGTAG+TGG - chr5_3:46681420-46681439 None:intergenic 50.0%
! ACGCGATTCATCTGAAGCAG+AGG + chr5_3:46681422-46681441 Msa0814490:CDS 50.0%
! GTCTAGTTTCCTGATCAGGG+GGG - chr5_3:46681740-46681759 None:intergenic 50.0%
CTTGGGGCACAACCATGATT+AGG - chr5_3:46681822-46681841 None:intergenic 50.0%
! ACGTAAGGAGAGTGTAGTGG+CGG + chr5_3:46683249-46683268 Msa0814490:intron 50.0%
!! CAAGTAAGGCGCTGTGACAA+GGG - chr5_3:46683715-46683734 None:intergenic 50.0%
!! ACAAGTAAGGCGCTGTGACA+AGG - chr5_3:46683716-46683735 None:intergenic 50.0%
TCACAGCGCCTTACTTGTCT+TGG + chr5_3:46683718-46683737 Msa0814490:intron 50.0%
! CTTGGTGGCAAACTCCCAAA+AGG + chr5_3:46683736-46683755 Msa0814490:CDS 50.0%
!! ATTGTTTTACCGGTGCCAGG+CGG - chr5_3:46683778-46683797 None:intergenic 50.0%
! ATGTTGGTGAGCGCTATTGC+TGG + chr5_3:46683796-46683815 Msa0814490:CDS 50.0%
! TCTCGCCGTCCTTTTACATC+TGG - chr5_3:46684156-46684175 None:intergenic 50.0%
CAGTTTACACCTGGGTTCTC+TGG + chr5_3:46684413-46684432 Msa0814490:CDS 50.0%
!! TGGTGCTGACCTTGCAAACT+TGG + chr5_3:46684433-46684452 Msa0814490:CDS 50.0%
ATCATGTGTGCTCACGGCTT+TGG - chr5_3:46684495-46684514 None:intergenic 50.0%
TGATGTTTGCATGGGAGGTC+GGG + chr5_3:46684757-46684776 Msa0814490:CDS 50.0%
AACTTCTCTGGCCAGGCAAA+TGG + chr5_3:46684847-46684866 Msa0814490:CDS 50.0%
GGAGCTTCATCTGCTTGCAA+AGG + chr5_3:46685036-46685055 Msa0814490:CDS 50.0%
!! TGCTTACCATCCGATTTGGG+CGG + chr5_3:46685284-46685303 Msa0814490:three_prime_UTR 50.0%
CTTATTCCGCCCAAATCGGA+TGG - chr5_3:46685293-46685312 None:intergenic 50.0%
!! CCGATTTGGGCGGAATAAGA+TGG + chr5_3:46685294-46685313 Msa0814490:three_prime_UTR 50.0%
! GTTTGTGGCATCTGAAGCCT+CGG - chr5_3:46685473-46685492 None:intergenic 50.0%
AGCTGCAGCTGCATTGTTTG+TGG - chr5_3:46685488-46685507 None:intergenic 50.0%
AGGTTCAGCTTCAGCTGCAT+TGG - chr5_3:46685524-46685543 None:intergenic 50.0%
ACACGACACATGTCCGACAC+CGG + chr5_3:46680576-46680595 Msa0814490:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr5_3:46680613-46680632 Msa0814490:intron 55.0%
GGGGCCTTCCTCTTGATATG+TGG + chr5_3:46682550-46682569 Msa0814490:CDS 55.0%
TGGCGGCTGTGACAGAAAAG+TGG + chr5_3:46683266-46683285 Msa0814490:intron 55.0%
CAGCGCCTTACTTGTCTTGG+TGG + chr5_3:46683721-46683740 Msa0814490:intron 55.0%
! GTTTTGCTTTATGGCCCGCC+TGG + chr5_3:46683760-46683779 Msa0814490:CDS 55.0%
!! TTGTTTTACCGGTGCCAGGC+GGG - chr5_3:46683777-46683796 None:intergenic 55.0%
CTAAGGCATGGCCACACTCA+TGG - chr5_3:46684604-46684623 None:intergenic 55.0%
TGGTGCGAATCCTGTTCACC+AGG + chr5_3:46684640-46684659 Msa0814490:CDS 55.0%
! AGCTTCAGCTGCATTGGTCG+CGG - chr5_3:46685518-46685537 None:intergenic 55.0%
CACGACACATGTCCGACACC+GGG + chr5_3:46680577-46680596 Msa0814490:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - chr5_3:46680592-46680611 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - chr5_3:46680598-46680617 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - chr5_3:46680608-46680627 None:intergenic 60.0%
GGTGAGCGCTATTGCTGGAG+AGG + chr5_3:46683801-46683820 Msa0814490:CDS 60.0%
AGCGCTATTGCTGGAGAGGC+TGG + chr5_3:46683805-46683824 Msa0814490:CDS 60.0%
GCGCTATTGCTGGAGAGGCT+GGG + chr5_3:46683806-46683825 Msa0814490:CDS 60.0%
CGCTATTGCTGGAGAGGCTG+GGG + chr5_3:46683807-46683826 Msa0814490:CDS 60.0%
AGGTCAGCACCAGAGAACCC+AGG - chr5_3:46684425-46684444 None:intergenic 60.0%
ACCGTCCTTTGCTGCCCTCA+GGG - chr5_3:46684471-46684490 None:intergenic 60.0%
GTTCCTCATGGGGAGTCTCG+TGG + chr5_3:46684671-46684690 Msa0814490:CDS 60.0%
TCATGGGGAGTCTCGTGGCA+GGG + chr5_3:46684676-46684695 Msa0814490:CDS 60.0%
ACCGGGACACGCCTAATCCG+AGG + chr5_3:46680594-46680613 Msa0814490:intron 65.0%
CTTTATGGCCCGCCTGGCAC+CGG + chr5_3:46683766-46683785 Msa0814490:CDS 65.0%
TGCTGCCCTGAGGGCAGCAA+AGG + chr5_3:46684463-46684482 Msa0814490:CDS 65.0%
GCCCTGAGGGCAGCAAAGGA+CGG + chr5_3:46684467-46684486 Msa0814490:CDS 65.0%
CACCGTCCTTTGCTGCCCTC+AGG - chr5_3:46684472-46684491 None:intergenic 65.0%
CTGCCACGAGACTCCCCATG+AGG - chr5_3:46684677-46684696 None:intergenic 65.0%
CTCATGGGGAGTCTCGTGGC+AGG + chr5_3:46684675-46684694 Msa0814490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 46679846 46685647 46679846 ID=Msa0814490;Name=Msa0814490
chr5_3 mRNA 46679846 46685647 46679846 ID=Msa0814490-mRNA-1;Parent=Msa0814490;Name=Msa0814490-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.57|1|1|1|7|452|687
chr5_3 exon 46679846 46679911 46679846 ID=Msa0814490-mRNA-1:exon:14134;Parent=Msa0814490-mRNA-1
chr5_3 exon 46681038 46681134 46681038 ID=Msa0814490-mRNA-1:exon:14135;Parent=Msa0814490-mRNA-1
chr5_3 exon 46681367 46681618 46681367 ID=Msa0814490-mRNA-1:exon:14136;Parent=Msa0814490-mRNA-1
chr5_3 exon 46682368 46682610 46682368 ID=Msa0814490-mRNA-1:exon:14137;Parent=Msa0814490-mRNA-1
chr5_3 exon 46682742 46682848 46682742 ID=Msa0814490-mRNA-1:exon:14138;Parent=Msa0814490-mRNA-1
chr5_3 exon 46683724 46684200 46683724 ID=Msa0814490-mRNA-1:exon:14139;Parent=Msa0814490-mRNA-1
chr5_3 exon 46684374 46685647 46684374 ID=Msa0814490-mRNA-1:exon:14140;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46679846 46679911 46679846 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46681038 46681134 46681038 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46681367 46681618 46681367 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46682368 46682610 46682368 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46682742 46682848 46682742 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46683724 46684200 46683724 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 CDS 46684374 46685195 46684374 ID=Msa0814490-mRNA-1:cds;Parent=Msa0814490-mRNA-1
chr5_3 three_prime_UTR 46685196 46685647 46685196 ID=Msa0814490-mRNA-1:three_prime_utr;Parent=Msa0814490-mRNA-1
Gene Sequence

>Msa0814490

ATGGCTGCTTGGAGGCGTTTCATTACACACCACCTCACTTCTTCAATCCATCAAGCTCGAATGCAGGTTGAAAGGCGTCAATCTGAATTTGTGAAGGTCAAAGAATTATTGAGTAGAAACTATGTATCTCGTCATAAGTTTGAAAAGTTTGAAGGCTGTACAAGGAATAGGCTTTTATTCTCCCAGTCCAGATATCTAGGAAATCTGGCACGACCACTACGCGATTCATCTGAAGCAGAGGAAGCCTCTTCTCTTAAAGAACTTTACGATGAAATTGATCCTGAAGCCGTGATTAGAGCATATGAAAGCAACCCATCTCTGCATAAGAATTCTGTGGCATTTTCTGAATATGTTAAAGCATTAGTAAAAGTTGGCAGGCTTTCTGAAAGTGAATTTCTGAACACTCTACTAAGAGCTATTTCTCATTCAGCGAGAAAGGAAGAGAGTAGTATAAGTGGTGTTGCAGCTCTTATAAATGTCGGAGAACCAACAAAAGATGGGATTCTTGGAACTACAAGTGCTCCTGTCGATAAGGTTGCTGCATTAGAAGGTGAAAATTTCAAAGCGCAACTATGGCATACAATTTGGTTTGTTGCAGGGGCCTTCCTCTTGATATGTGGTGTAGGAGCTCACATCGTGTATAAAGGAATTAACACAGAACTGCAGCCCAGTGTAGAGACAAGTACTAAATTTAGCGATGTGAAAGGTGTAGATGAGGCTAAGGCTGAACTTGAAGAAATTGTTGATTACCTAAAAGATCCTAAGCGCCTTACTTGTCTTGGTGGCAAACTCCCAAAAGGTGTTTTGCTTTATGGCCCGCCTGGCACCGGTAAAACAATGTTGGTGAGCGCTATTGCTGGAGAGGCTGGGGTTCCTTTCTTCTCAAGCAATGGACGTGAATTTGAAGAGACGATTGTTGGTGTTGGTGCACAAAGGGTGAGAGATCTTTTTGCTGCTGCAAAAAAGCGTGCGCCTTGTATAATCTTTATTGATGAGATTGATGCTATTGGCGGAAAACCAAATTCAAACGACCAAATGTACGTGAAGTTGACTTTAAATCAGTTGCTTGTTGAGTTAGATGGTTTCAAACAAAATGAAGGCATAATTGTGATTGGTGCTACTAACTCTCCCGAGTCAATAGATAAGGCTTTGTTGAGACATGGGCGATTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAAAAGGACGGCGAGAGATTTTGGAATCTCACATGTCAAAGGTTCTGAAGGCAGATAATGTTGATCTGATGAAGATTGCTCAGTTTACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAATATTGCTGCCCTGAGGGCAGCAAAGGACGGTGCCAAAGCCGTGAGCACACATGATTTAGAGTTCGCACTGGAGAAGATTATAATGGGAAGTCAGCGCAAGTCAGTTGTTATATCTGAGGAATCAATAGAAAAGACTGCTTTCCATGAGTGTGGCCATGCCTTAGTTGCAATTTATACTGATGGTGCGAATCCTGTTCACCAGGCAACTATTGTTCCTCATGGGGAGTCTCGTGGCAGGGTTTCTTATTTGCCTAAAGATCAGAACAGGCTCTCTCGTAAACAGATGCTTGCCAGACTTGATGTTTGCATGGGAGGTCGGGTTGCTGAAGAGCTAATTTTCGGACAAAGTGGAGTTAATTCCGGTGCATGCTCAGATCTTTTTAAAGCAACTTCTCTGGCCAGGCAAATGGTTACTAGATATGGTATGAGTACTGAAGTTGGACCCGTCAGTCACGATTACTTCGATAACGGGAGAAGTATGAGCTCAGAAACTAGGCTGCTTATTGATAAAGAAGTGAAGAATTTGCTTGAGAGAGCTTACAACAATGCAAAAACTATTCTAACCACCCATCAAAAGGAGCTTCATCTGCTTGCAAAGGCTCTTCTGAAGCATCACACACTTACAGGAAATCAGATTAAAGATTTACTTGCAAATGGGCAGTCACGTGTAGTCAAAGCTAAGGCTATGTTTGGATTGATGATATGTGATGGAATGGAATGGAATGAAATTGAATAA
Protein sequence

>Msa0814490

MAAWRRFITHHLTSSIHQARMQVERRQSEFVKVKELLSRNYVSRHKFEKFEGCTRNRLLFSQSRYLGNLARPLRDSSEAEEASSLKELYDEIDPEAVIRAYESNPSLHKNSVAFSEYVKALVKVGRLSESEFLNTLLRAISHSARKEESSISGVAALINVGEPTKDGILGTTSAPVDKVAALEGENFKAQLWHTIWFVAGAFLLICGVGAHIVYKGINTELQPSVETSTKFSDVKGVDEAKAELEEIVDYLKDPKRLTCLGGKLPKGVLLYGPPGTGKTMLVSAIAGEAGVPFFSSNGREFEETIVGVGAQRVRDLFAAAKKRAPCIIFIDEIDAIGGKPNSNDQMYVKLTLNQLLVELDGFKQNEGIIVIGATNSPESIDKALLRHGRFDRHVVVPNPDVKGRREILESHMSKVLKADNVDLMKIAQFTPGFSGADLANLVNIAALRAAKDGAKAVSTHDLEFALEKIIMGSQRKSVVISEESIEKTAFHECGHALVAIYTDGANPVHQATIVPHGESRGRVSYLPKDQNRLSRKQMLARLDVCMGGRVAEELIFGQSGVNSGACSDLFKATSLARQMVTRYGMSTEVGPVSHDYFDNGRSMSSETRLLIDKEVKNLLERAYNNAKTILTTHQKELHLLAKALLKHHTLTGNQIKDLLANGQSRVVKAKAMFGLMICDGMEWNEIE*