AlfalfaGEDB | Msa0817950

M. sativa cultivar zhongmu-4 / Msa0817950

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0817950	XP_003616606.1	73.922	997	254	3	1	994	16	1009	0.0	1420

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0817950	sp\|C0LGP4\|Y3475_ARATH	43.782	989	530	10	18	991	23	1000	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0817950	G7KGY2	73.922	997	254	3	1	994	16	1009	0.0	1420

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0817920	Msa0817950	0.836417	9.472615e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0817950	MtrunA17_Chr5g0436861	73.922	997	254	3	1	994	16	1009	1420
Msa0817950	MtrunA17_Chr2g0314001	72.261	995	275	1	1	994	15	1009	1389
Msa0817950	MtrunA17_Chr2g0314021	72.965	995	268	1	1	994	15	1009	1385
Msa0817950	MtrunA17_Chr1g0159871	77.457	936	209	2	61	994	1	936	1362
Msa0817950	MtrunA17_Chr5g0436841	72.590	996	266	3	1	994	60	1050	1350
Msa0817950	MtrunA17_Chr2g0314031	70.955	995	279	2	1	994	11	996	1343
Msa0817950	MtrunA17_Chr5g0437331	73.286	992	261	1	1	992	17	1004	1314
Msa0817950	MtrunA17_Chr5g0436941	66.935	995	325	3	1	992	7	1000	1307
Msa0817950	MtrunA17_Chr7g0248261	70.251	995	246	4	1	994	15	960	1302
Msa0817950	MtrunA17_Chr5g0436921	71.623	881	244	4	1	876	7	886	1219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0817950	AT3G47570.1	43.782	989	530	10	18	991	23	1000	0.0	781
Msa0817950	AT3G47580.1	41.609	1007	563	9	1	992	6	1002	0.0	734
Msa0817950	AT3G47090.1	41.449	994	559	10	12	992	17	1000	0.0	719
Msa0817950	AT5G20480.1	41.793	993	545	10	15	992	26	1000	0.0	713
Msa0817950	AT5G20480.2	41.793	993	545	10	15	992	26	1000	0.0	713
Msa0817950	AT3G47110.1	42.786	998	544	8	12	992	32	1019	0.0	708
Msa0817950	AT5G46330.2	34.251	981	558	19	73	991	204	1159	2.98e-146	466
Msa0817950	AT5G46330.2	34.333	600	371	9	23	615	33	616	7.96e-79	280
Msa0817950	AT5G46330.2	37.500	136	84	1	66	200	630	765	1.97e-15	82.0
Msa0817950	AT5G46330.1	34.251	981	558	19	73	991	204	1159	2.98e-146	466

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Find 209 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGATTCAAATTTGG+TGG	0.484083	5_3:+53425409	None:intergenic
AAACAAGATCAGAAAGTGTT+TGG	0.408855	5_3:-53423166	Msa0817950:CDS
AAACTTGAATGGTTTAATAT+TGG	0.265268	5_3:-53425238	Msa0817950:CDS
AAAGCTTCCTGCATGCTTTA+GGG	0.305441	5_3:-53424294	Msa0817950:CDS
AAATTCAAAGACTGATAAGC+TGG	0.483951	5_3:-53426100	Msa0817950:CDS
AACATTTCTAGACTCCCATT+AGG	0.555588	5_3:+53423822	None:intergenic
AAGCAAGAAGCGAGATCCTT+AGG	0.454548	5_3:+53424590	None:intergenic
AAGTGACGAAGCATTTCCCA+CGG	0.656980	5_3:+53425618	None:intergenic
AAGTGGCGGAGCTCGCGATT+TGG	0.431224	5_3:-53425200	Msa0817950:CDS
AATATTGGTTCTAATAATTT+CGG	0.304076	5_3:-53425223	Msa0817950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCAAAGACTGATAAGC+TGG	-	chr5_3:53422913-53422932	Msa0817950:three_prime_UTR	30.0%
TTGAAGGAAAAGCTTACAAA+TGG	-	chr5_3:53422947-53422966	Msa0817950:three_prime_UTR	30.0%
GCATTTGGAAAATCAAACAT+TGG	-	chr5_3:53423066-53423085	Msa0817950:CDS	30.0%
TTAGGGTACAATAAACTCAT+GGG	-	chr5_3:53423286-53423305	Msa0817950:CDS	30.0%
CTTAAAAAAATCTATGTGGG+AGG	-	chr5_3:53423634-53423653	Msa0817950:CDS	30.0%
GGTTTAACATTCTTAACCAT+TGG	-	chr5_3:53424012-53424031	Msa0817950:CDS	30.0%
ATTGGATACAATTTCCTTGA+GGG	-	chr5_3:53424030-53424049	Msa0817950:CDS	30.0%
GGAACAATTCCAAATTCTAT+TGG	-	chr5_3:53424051-53424070	Msa0817950:CDS	30.0%
GTAAGATTTCCAATAACAGT+AGG	+	chr5_3:53424135-53424154	None:intergenic	30.0%
TATTGGAAATCTTACTCTCT+TGG	-	chr5_3:53424140-53424159	Msa0817950:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	53422869	53426166	53422869	ID=Msa0817950;Name=Msa0817950
chr5_3	mRNA	53422869	53426166	53422869	ID=Msa0817950-mRNA-1;Parent=Msa0817950;Name=Msa0817950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|1\|0.5\|1\|1\|1\|2\|184\|994
chr5_3	exon	53422869	53423408	53422869	ID=Msa0817950-mRNA-1:exon:16105;Parent=Msa0817950-mRNA-1
chr5_3	exon	53423538	53426166	53423538	ID=Msa0817950-mRNA-1:exon:16104;Parent=Msa0817950-mRNA-1
chr5_3	CDS	53423538	53426166	53423538	ID=Msa0817950-mRNA-1:cds;Parent=Msa0817950-mRNA-1
chr5_3	CDS	53423053	53423408	53423053	ID=Msa0817950-mRNA-1:cds;Parent=Msa0817950-mRNA-1
chr5_3	three_prime_UTR	53422869	53423052	53422869	ID=Msa0817950-mRNA-1:three_prime_utr;Parent=Msa0817950-mRNA-1

Gene Sequence

>Msa0817950

ATGTTGGCGTATTTCATGCCATTGGCAACAATTGCACTTTCTTTAAATTCAAAGACTGATAAGCTGGCTTTGCTTGCTTTGAAGGAAAAGCTTACAAATGGTGTACCAGATTCTTTGCCGTCATGGAATGAGTCTCTACATTTCTGTGAATGGCAGGGTGTTACATGTGGTCGTCGTCACATGAGAGTCTCTGCCTTGCATTTGGAAAATCAAACATTGGGTGGTACTCTTGGACCATCCTTGGGAAATCTAACATTTCTCAGAATGCTCAACCTTTCAAACATCGACTTGCATGGTGAAATTCCAAAACAAGTTGGTCGTTTGAAGCGATTGCAATTTCTTCACTTATCCCGAAACCATCTCCATGGAGCGATTCCAAAAGAGCTGACTAACTGTACGAATATCAAGACAATTTTTTTAGGGTACAATAAACTCATGGGAAGAGTTCCGACATGGTTTGGAACAATGATGCAACTTACTAACTTGCATCTAGGTGGCAATAATCTAGTTGGCACTATTCCATCTTCCGTGGGAAATGCTTCGTCACTTCAATTTCTATTACTTGAAGAAAATCACTTGGACGGAAGCATACCTTATTCTTTGGGTAGGTTGTCAAGTTTAAAAAGTCTAAGTCTAAGTTTAAATAATCTGTCAGGTGAAATCCCTTACTCTCTTTATAATCTATCAAATATTCTGTATTTTGATGTTGCGGGAAACAGGTTATTTGGTAGTCTTCCACCAAATTTGAATCTTGTTTTTCCGAATCTTAAAAAAATCTATGTGGGAGGGAACCAAATCAGCGGAACTTTTCCGTCTTCCATATCCAACCTCACCGAATTGATAGATTTTGATATAGCTTTTAATGATTTTAATGGGCCAGTACCACTAACTTTGGGTCGATTAAATAAACTTGAATGGTTTAATATTGGTTCTAATAATTTCGGAAGTGGCGGAGCTCGCGATTTGGACTTTGTTTCCTCATTAACCAACTGCACTCAATTGTCAGCACTCTATTTTCATTTTAATAAACTTAGTGGGGAGTTGTCTGATGTCATAGGAAATTTTTCCATCGATCTCAATTCTCTTGGTATGCATGGTAATCAAATATATGGAGTGATACCTGAAAGAATTGGACAGCTAACAGGTTTAACATTCTTAACCATTGGATACAATTTCCTTGAGGGAACAATTCCAAATTCTATTGGAAAGCTTAAGAATCTAGTATTCCTGGATTTGGAAGAAAATCAATTATCTGGTAACATTCCTACTGTTATTGGAAATCTTACTCTCTTGGCTGAACTAGACATGTCTGTCAATTCATTGCAAGGAAACATTCCATCCACCCTTAGATATTGTACCCACTTGCAGACTATAAGTATAACTAATAACAAATTGAGTGGTGATATACCTAGTCAAATATTTAGCTATGTAGATGGTTTGATAAATATTTTCTTGACCAACAACTCCTTGACCGGTCCAATTCCTTTAGAGATTGGTAACTTGAAGCATCTTTCAGTATTGTATCTGAGCTCAAATAAGTTATCTGGGGAAATTCCTAAGGATCTCGCTTCTTGCTTAGCATTGACAGAACTTGGGTTGGGGAGTAATTTCTTGCATGGAAGGATACCTTTGTTCTTGGGCTCTTTAAGATCCTTGGAAATTTTAGACATTTCTAACAACAGTTTGTCAAGCACAATTCCCTTTGAACTAGAAAATCTAACATTTTTGCATACGTTGGACTTGTCTTTTAACAACCTATATGGTGAGATTCCCATAGGAGGTGTCTTTAGCAATGTGAAAGCAATTTCAATAATTGGAAATAAGAACCTTTGTGGAGGGATACCTCAATTAAAGCTTCCTGCATGCTTTAGGGTTCCTTCCAAGAAAAACAAAATATCTTTCAAAAAGAAACTTATCCTCATCATTGTAATTGGAGGAGTTTTGATCTCTTTCATAGCTTTTATAATTGTGCATTTTCTCACGAGAAAGCCCAAAATGTTACCCTCTTCACCATCTTTGCGAAATGAGAAATTGAGGGTTACTTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGTACAGGAAGCTATGGCTCTGTTTACAAAGGATCTCTTCCAAACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTGAAACACGTGGAGCAGCAAAGAGTTTCATTGCGGAATGCAATGCTTTAGGAAAGATGAGGCACCGTAATCTTGTCAAAATCCTAACGTGTTGTTCAAGTGTTGATTATAATGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGCCTAATGGGAGTCTAGAAATGTTTTTGCATGATAACGAAGGGTCTGAAAATCATAATCTCAACCTCACACAAAGGTTAGACATTGCTCTTGATGTAGCTCATGCGCTTGATTATCTTCACAATGATACAGAGCAAGCCGTAGTTCACTGTGATCTTAAGCCGAGCAACGTTCTTCTTGACGATGACTTTGTAGCCCACTTGGGAGACTTCGGCTTGGCTAGGCTCATTCTTGGAACCACAGAGCTTTCAAGTAAAGATCAAGTTATTTCTTCTACAATTAAAGGAACTATAGGATATATTCCTCCTGAGTACGGAGAAGGTGTTCCAGTATCAGCACAGGGAGATATCTACAGCTTTGGGATTCTTCTACTAGAGATGTTCACCGGAAAGAGACCAACAAATAACAACTTTTCTGAGAGTGTAAGTCTACATGAATTCTGCAAAATGAACATTCCAGAAGGAATCCTTGAGATAGTAGATTCACAATTACTTTTGCCATTTGCTGAAGATGAGACGGGGATTGTGGAAAACAAGATCAGAAAGTGTTTGGTGATGTTTGCTAGAATCGGAGTTGCATGTTCTGAAGAGTTTCCTGCTCATCGAATGGCGATAAAAGATGTTATAGTGAAGTTGCTTGAAATAAAACAGAAGTTACATTGCTAG

Protein sequence

>Msa0817950

MLAYFMPLATIALSLNSKTDKLALLALKEKLTNGVPDSLPSWNESLHFCEWQGVTCGRRHMRVSALHLENQTLGGTLGPSLGNLTFLRMLNLSNIDLHGEIPKQVGRLKRLQFLHLSRNHLHGAIPKELTNCTNIKTIFLGYNKLMGRVPTWFGTMMQLTNLHLGGNNLVGTIPSSVGNASSLQFLLLEENHLDGSIPYSLGRLSSLKSLSLSLNNLSGEIPYSLYNLSNILYFDVAGNRLFGSLPPNLNLVFPNLKKIYVGGNQISGTFPSSISNLTELIDFDIAFNDFNGPVPLTLGRLNKLEWFNIGSNNFGSGGARDLDFVSSLTNCTQLSALYFHFNKLSGELSDVIGNFSIDLNSLGMHGNQIYGVIPERIGQLTGLTFLTIGYNFLEGTIPNSIGKLKNLVFLDLEENQLSGNIPTVIGNLTLLAELDMSVNSLQGNIPSTLRYCTHLQTISITNNKLSGDIPSQIFSYVDGLINIFLTNNSLTGPIPLEIGNLKHLSVLYLSSNKLSGEIPKDLASCLALTELGLGSNFLHGRIPLFLGSLRSLEILDISNNSLSSTIPFELENLTFLHTLDLSFNNLYGEIPIGGVFSNVKAISIIGNKNLCGGIPQLKLPACFRVPSKKNKISFKKKLILIIVIGGVLISFIAFIIVHFLTRKPKMLPSSPSLRNEKLRVTYGELHEATNGFSSSNLVGTGSYGSVYKGSLPNFERPIVVKVLNLETRGAAKSFIAECNALGKMRHRNLVKILTCCSSVDYNGEDFKAIVFEFMPNGSLEMFLHDNEGSENHNLNLTQRLDIALDVAHALDYLHNDTEQAVVHCDLKPSNVLLDDDFVAHLGDFGLARLILGTTELSSKDQVISSTIKGTIGYIPPEYGEGVPVSAQGDIYSFGILLLEMFTGKRPTNNNFSESVSLHEFCKMNIPEGILEIVDSQLLLPFAEDETGIVENKIRKCLVMFARIGVACSEEFPAHRMAIKDVIVKLLEIKQKLHC*