Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818490 | XP_003616690.1 | 98.204 | 167 | 2 | 1 | 3 | 168 | 1 | 167 | 4.11e-118 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818490 | sp|Q8LBW3|LBD12_ARATH | 78.947 | 133 | 24 | 1 | 5 | 133 | 5 | 137 | 6.79e-73 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818490 | G7K288 | 98.204 | 167 | 2 | 1 | 3 | 168 | 1 | 167 | 1.97e-118 | 341 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0818490 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732390 | Msa0818490 | 0.932817 | 4.816666e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818490 | MtrunA17_Chr5g0437571 | 98.204 | 167 | 2 | 1 | 3 | 168 | 1 | 167 | 3.78e-122 | 341 |
| Msa0818490 | MtrunA17_Chr3g0114061 | 73.171 | 164 | 35 | 4 | 3 | 162 | 1 | 159 | 1.48e-80 | 235 |
| Msa0818490 | MtrunA17_Chr3g0106101 | 65.909 | 176 | 44 | 5 | 3 | 162 | 1 | 176 | 7.88e-73 | 216 |
| Msa0818490 | MtrunA17_Chr2g0311601 | 76.106 | 113 | 27 | 0 | 1 | 113 | 6 | 118 | 1.23e-60 | 185 |
| Msa0818490 | MtrunA17_Chr4g0043421 | 56.287 | 167 | 62 | 1 | 1 | 167 | 8 | 163 | 5.10e-60 | 184 |
| Msa0818490 | MtrunA17_Chr7g0227511 | 53.020 | 149 | 66 | 1 | 6 | 150 | 9 | 157 | 1.31e-50 | 160 |
| Msa0818490 | MtrunA17_Chr4g0058651 | 52.532 | 158 | 58 | 1 | 6 | 146 | 9 | 166 | 1.52e-50 | 160 |
| Msa0818490 | MtrunA17_Chr3g0117121 | 71.154 | 104 | 30 | 0 | 6 | 109 | 8 | 111 | 3.16e-50 | 159 |
| Msa0818490 | MtrunA17_Chr4g0030001 | 64.035 | 114 | 40 | 1 | 7 | 119 | 23 | 136 | 1.20e-49 | 158 |
| Msa0818490 | MtrunA17_Chr5g0438091 | 60.504 | 119 | 47 | 0 | 3 | 121 | 34 | 152 | 8.66e-49 | 156 |
| Msa0818490 | MtrunA17_Chr6g0449641 | 57.377 | 122 | 52 | 0 | 6 | 127 | 7 | 128 | 1.48e-48 | 154 |
| Msa0818490 | MtrunA17_Chr1g0200201 | 64.865 | 111 | 39 | 0 | 9 | 119 | 73 | 183 | 3.91e-48 | 155 |
| Msa0818490 | MtrunA17_Chr3g0129071 | 69.903 | 103 | 31 | 0 | 7 | 109 | 46 | 148 | 9.10e-48 | 155 |
| Msa0818490 | MtrunA17_Chr6g0449651 | 49.315 | 146 | 63 | 1 | 6 | 151 | 65 | 199 | 5.66e-47 | 152 |
| Msa0818490 | MtrunA17_Chr3g0115431 | 60.684 | 117 | 45 | 1 | 6 | 122 | 7 | 122 | 4.16e-46 | 150 |
| Msa0818490 | MtrunA17_Chr5g0402611 | 59.200 | 125 | 50 | 1 | 6 | 129 | 6 | 130 | 5.65e-45 | 150 |
| Msa0818490 | MtrunA17_Chr3g0113891 | 67.000 | 100 | 33 | 0 | 6 | 105 | 12 | 111 | 5.08e-44 | 144 |
| Msa0818490 | MtrunA17_Chr3g0097221 | 62.136 | 103 | 39 | 0 | 6 | 108 | 5 | 107 | 6.40e-44 | 146 |
| Msa0818490 | MtrunA17_Chr5g0432451 | 68.932 | 103 | 32 | 0 | 7 | 109 | 42 | 144 | 1.55e-43 | 144 |
| Msa0818490 | MtrunA17_Chr5g0437401 | 63.366 | 101 | 37 | 0 | 5 | 105 | 8 | 108 | 5.66e-42 | 138 |
| Msa0818490 | MtrunA17_Chr8g0353981 | 63.551 | 107 | 39 | 0 | 6 | 112 | 5 | 111 | 1.14e-41 | 139 |
| Msa0818490 | MtrunA17_Chr5g0444351 | 52.294 | 109 | 52 | 0 | 9 | 117 | 6 | 114 | 7.54e-39 | 129 |
| Msa0818490 | MtrunA17_Chr7g0260971 | 56.604 | 106 | 45 | 1 | 4 | 108 | 10 | 115 | 1.43e-38 | 130 |
| Msa0818490 | MtrunA17_Chr1g0184281 | 59.406 | 101 | 40 | 1 | 8 | 107 | 15 | 115 | 8.02e-38 | 128 |
| Msa0818490 | MtrunA17_Chr8g0351721 | 52.846 | 123 | 54 | 2 | 5 | 123 | 15 | 137 | 1.15e-37 | 128 |
| Msa0818490 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 7 | 117 | 4 | 114 | 4.22e-37 | 124 |
| Msa0818490 | MtrunA17_Chr8g0351701 | 55.882 | 102 | 44 | 1 | 8 | 108 | 23 | 124 | 6.28e-36 | 124 |
| Msa0818490 | MtrunA17_Chr7g0245871 | 57.843 | 102 | 42 | 1 | 8 | 108 | 27 | 128 | 8.85e-36 | 124 |
| Msa0818490 | MtrunA17_Chr7g0261031 | 47.143 | 140 | 62 | 4 | 4 | 132 | 4 | 142 | 7.41e-35 | 121 |
| Msa0818490 | MtrunA17_Chr5g0435641 | 42.177 | 147 | 72 | 3 | 4 | 142 | 3 | 144 | 1.88e-33 | 117 |
| Msa0818490 | MtrunA17_Chr1g0184271 | 56.701 | 97 | 39 | 2 | 8 | 102 | 12 | 107 | 3.97e-33 | 117 |
| Msa0818490 | MtrunA17_Chr6g0460951 | 49.038 | 104 | 52 | 1 | 7 | 109 | 39 | 142 | 3.76e-32 | 114 |
| Msa0818490 | MtrunA17_Chr7g0245861 | 56.989 | 93 | 37 | 2 | 5 | 94 | 9 | 101 | 2.58e-31 | 110 |
| Msa0818490 | MtrunA17_Chr8g0374601 | 48.515 | 101 | 52 | 0 | 8 | 108 | 26 | 126 | 2.66e-30 | 111 |
| Msa0818490 | MtrunA17_Chr8g0374591 | 45.545 | 101 | 55 | 0 | 8 | 108 | 8 | 108 | 1.11e-29 | 105 |
| Msa0818490 | MtrunA17_Chr8g0374581 | 48.544 | 103 | 52 | 1 | 8 | 109 | 8 | 110 | 7.21e-29 | 106 |
| Msa0818490 | MtrunA17_Chr6g0452691 | 40.351 | 114 | 67 | 1 | 3 | 115 | 4 | 117 | 3.64e-27 | 100 |
| Msa0818490 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 8 | 94 | 7 | 94 | 8.74e-27 | 97.1 |
| Msa0818490 | MtrunA17_Chr4g0059901 | 43.333 | 120 | 67 | 1 | 2 | 120 | 4 | 123 | 5.78e-25 | 97.1 |
| Msa0818490 | MtrunA17_Chr6g0452671 | 41.935 | 93 | 54 | 0 | 9 | 101 | 12 | 104 | 2.33e-24 | 94.0 |
| Msa0818490 | MtrunA17_Chr6g0452661 | 44.578 | 83 | 45 | 1 | 6 | 87 | 7 | 89 | 4.44e-23 | 91.7 |
| Msa0818490 | MtrunA17_Chr2g0326051 | 61.194 | 67 | 26 | 0 | 53 | 119 | 5 | 71 | 4.73e-23 | 88.6 |
| Msa0818490 | MtrunA17_Chr4g0040831 | 35.200 | 125 | 78 | 1 | 4 | 125 | 11 | 135 | 1.01e-22 | 89.7 |
| Msa0818490 | MtrunA17_Chr2g0330201 | 35.238 | 105 | 68 | 0 | 4 | 108 | 15 | 119 | 6.15e-21 | 87.0 |
| Msa0818490 | MtrunA17_Chr4g0055441 | 40.426 | 94 | 51 | 2 | 9 | 97 | 3 | 96 | 8.11e-21 | 83.6 |
| Msa0818490 | MtrunA17_Chr8g0342351 | 31.159 | 138 | 95 | 0 | 9 | 146 | 13 | 150 | 6.93e-20 | 83.6 |
| Msa0818490 | MtrunA17_Chr4g0046201 | 39.080 | 87 | 53 | 0 | 9 | 95 | 7 | 93 | 3.74e-19 | 81.6 |
| Msa0818490 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 7 | 54 | 32 | 79 | 4.95e-19 | 77.0 |
| Msa0818490 | MtrunA17_Chr5g0439111 | 39.759 | 83 | 49 | 1 | 6 | 87 | 7 | 89 | 5.59e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818490 | AT2G30130.1 | 78.947 | 133 | 24 | 1 | 5 | 133 | 5 | 137 | 6.90e-74 | 220 |
| Msa0818490 | AT1G31320.1 | 70.000 | 120 | 36 | 0 | 1 | 120 | 6 | 125 | 3.59e-53 | 167 |
| Msa0818490 | AT2G28500.1 | 55.714 | 140 | 61 | 1 | 7 | 146 | 54 | 192 | 8.59e-52 | 165 |
| Msa0818490 | AT1G07900.1 | 59.091 | 132 | 53 | 1 | 7 | 138 | 32 | 162 | 2.36e-51 | 163 |
| Msa0818490 | AT1G16530.1 | 70.093 | 107 | 31 | 1 | 7 | 112 | 13 | 119 | 1.73e-50 | 160 |
| Msa0818490 | AT5G63090.4 | 70.874 | 103 | 30 | 0 | 6 | 108 | 9 | 111 | 1.65e-49 | 158 |
| Msa0818490 | AT5G63090.3 | 70.874 | 103 | 30 | 0 | 6 | 108 | 9 | 111 | 1.65e-49 | 158 |
| Msa0818490 | AT5G63090.2 | 70.874 | 103 | 30 | 0 | 6 | 108 | 9 | 111 | 1.65e-49 | 158 |
| Msa0818490 | AT5G63090.1 | 70.874 | 103 | 30 | 0 | 6 | 108 | 9 | 111 | 1.65e-49 | 158 |
| Msa0818490 | AT3G27650.1 | 67.308 | 104 | 34 | 0 | 6 | 109 | 37 | 140 | 1.03e-48 | 155 |
| Msa0818490 | AT2G30340.1 | 60.504 | 119 | 47 | 0 | 7 | 125 | 51 | 169 | 4.07e-47 | 154 |
| Msa0818490 | AT2G30340.2 | 60.504 | 119 | 47 | 0 | 7 | 125 | 52 | 170 | 4.51e-47 | 154 |
| Msa0818490 | AT2G23660.2 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 1.59e-45 | 152 |
| Msa0818490 | AT2G23660.3 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 1.59e-45 | 152 |
| Msa0818490 | AT2G23660.1 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 1.59e-45 | 152 |
| Msa0818490 | AT2G40470.2 | 70.874 | 103 | 30 | 0 | 7 | 109 | 19 | 121 | 3.88e-45 | 147 |
| Msa0818490 | AT2G40470.1 | 70.874 | 103 | 30 | 0 | 7 | 109 | 44 | 146 | 5.13e-45 | 148 |
| Msa0818490 | AT5G66870.1 | 64.078 | 103 | 37 | 0 | 6 | 108 | 5 | 107 | 7.92e-44 | 147 |
| Msa0818490 | AT3G26660.1 | 59.091 | 110 | 45 | 0 | 9 | 118 | 6 | 115 | 1.66e-43 | 140 |
| Msa0818490 | AT3G26620.1 | 59.091 | 110 | 45 | 0 | 9 | 118 | 6 | 115 | 2.33e-43 | 140 |
| Msa0818490 | AT3G11090.1 | 58.621 | 116 | 47 | 1 | 6 | 120 | 9 | 124 | 1.45e-41 | 137 |
| Msa0818490 | AT1G65620.1 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 4.04e-41 | 137 |
| Msa0818490 | AT1G65620.4 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 4.04e-41 | 137 |
| Msa0818490 | AT1G65620.3 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 4.04e-41 | 137 |
| Msa0818490 | AT1G65620.5 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 4.04e-41 | 137 |
| Msa0818490 | AT1G65620.2 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 4.04e-41 | 137 |
| Msa0818490 | AT4G00210.1 | 45.283 | 159 | 70 | 3 | 4 | 161 | 7 | 149 | 2.03e-37 | 128 |
| Msa0818490 | AT2G42430.1 | 56.604 | 106 | 45 | 1 | 4 | 108 | 11 | 116 | 5.89e-37 | 128 |
| Msa0818490 | AT2G45410.1 | 50.388 | 129 | 60 | 2 | 11 | 135 | 19 | 147 | 2.12e-36 | 125 |
| Msa0818490 | AT3G03760.1 | 54.808 | 104 | 46 | 1 | 7 | 109 | 50 | 153 | 2.92e-36 | 127 |
| Msa0818490 | AT2G42440.1 | 47.143 | 140 | 64 | 4 | 4 | 141 | 3 | 134 | 4.94e-35 | 123 |
| Msa0818490 | AT2G31310.1 | 45.205 | 146 | 68 | 4 | 3 | 137 | 1 | 145 | 8.17e-35 | 120 |
| Msa0818490 | AT2G45420.1 | 52.885 | 104 | 48 | 1 | 11 | 113 | 40 | 143 | 7.13e-34 | 120 |
| Msa0818490 | AT4G00220.1 | 53.846 | 104 | 47 | 1 | 11 | 113 | 20 | 123 | 1.45e-33 | 119 |
| Msa0818490 | AT3G58190.1 | 48.031 | 127 | 58 | 3 | 8 | 132 | 11 | 131 | 2.48e-33 | 117 |
| Msa0818490 | AT5G06080.1 | 52.727 | 110 | 46 | 2 | 7 | 115 | 6 | 110 | 8.69e-32 | 112 |
| Msa0818490 | AT3G50510.1 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 2.49e-30 | 109 |
| Msa0818490 | AT3G50510.2 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 2.49e-30 | 109 |
| Msa0818490 | AT5G35900.1 | 42.718 | 103 | 59 | 0 | 9 | 111 | 6 | 108 | 2.38e-25 | 97.1 |
| Msa0818490 | AT3G47870.1 | 36.449 | 107 | 68 | 0 | 2 | 108 | 30 | 136 | 1.84e-23 | 94.7 |
| Msa0818490 | AT1G72980.1 | 39.130 | 115 | 69 | 1 | 4 | 117 | 9 | 123 | 2.18e-23 | 92.0 |
| Msa0818490 | AT3G13850.1 | 38.947 | 95 | 58 | 0 | 9 | 103 | 37 | 131 | 1.13e-21 | 89.0 |
| Msa0818490 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 9 | 85 | 25 | 101 | 2.48e-19 | 81.3 |
| Msa0818490 | AT2G19820.1 | 37.079 | 89 | 55 | 1 | 7 | 94 | 11 | 99 | 1.62e-16 | 72.0 |
| Msa0818490 | AT4G22700.1 | 36.634 | 101 | 62 | 2 | 9 | 108 | 6 | 105 | 8.20e-16 | 71.6 |
| Msa0818490 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 9 | 79 | 18 | 90 | 5.74e-14 | 65.9 |
| Msa0818490 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 3 | 94 | 4 | 95 | 8.33e-13 | 62.4 |
| Msa0818490 | AT2G19510.1 | 27.174 | 92 | 67 | 0 | 3 | 94 | 4 | 95 | 9.00e-11 | 56.6 |
Find 21 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTGCTCTTTGGTGAAT+TGG | 0.247897 | 5_3:-54436758 | None:intergenic |
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | 5_3:+54436998 | Msa0818490:CDS |
| TGTGAACTATGGCAAACTTT+TGG | 0.274301 | 5_3:-54435912 | None:intergenic |
| CATCTGCTCTTTGGTGAATT+GGG | 0.326240 | 5_3:-54436757 | None:intergenic |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | 5_3:-54437009 | None:intergenic |
| TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | 5_3:-54436766 | None:intergenic |
| TATAGTAAGATTTCTGATCT+TGG | 0.371111 | 5_3:-54436964 | None:intergenic |
| GCTCCAACACAGCCATAAAC+TGG | 0.374722 | 5_3:-54436824 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | 5_3:+54437066 | Msa0818490:CDS |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 5_3:+54436812 | Msa0818490:CDS |
| TCTTGGTTGATTTGTGGTGT+TGG | 0.412347 | 5_3:-54436947 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 5_3:-54435889 | None:intergenic |
| CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | 5_3:+54435951 | Msa0818490:CDS |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 5_3:+54437055 | Msa0818490:CDS |
| TTCTGATCTTGGTTGATTTG+TGG | 0.443495 | 5_3:-54436953 | None:intergenic |
| GATCCAGTTTATGGCTGTGT+TGG | 0.485932 | 5_3:+54436821 | Msa0818490:CDS |
| AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | 5_3:+54435915 | Msa0818490:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 5_3:-54435881 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 5_3:+54436798 | Msa0818490:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 5_3:-54435832 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 5_3:+54436799 | Msa0818490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5_3:54436134-54436153 | Msa0818490:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr5_3:54436135-54436154 | Msa0818490:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5_3:54436235-54436254 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr5_3:54436447-54436466 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTTGTTTGAATC+AGG | + | chr5_3:54436730-54436749 | Msa0818490:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5_3:54436134-54436153 | Msa0818490:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr5_3:54436135-54436154 | Msa0818490:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5_3:54436235-54436254 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr5_3:54436447-54436466 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTTGTTTGAATC+AGG | + | chr5_3:54436730-54436749 | Msa0818490:intron | 15.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | chr5_3:54435979-54435998 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5_3:54436002-54436021 | Msa0818490:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5_3:54436003-54436022 | Msa0818490:intron | 20.0% |
| !!! | TTATCTTTTGTACTTATGTT+TGG | + | chr5_3:54436093-54436112 | Msa0818490:intron | 20.0% |
| !! | TAATAGTAAACAGCTAAAAA+AGG | - | chr5_3:54436293-54436312 | None:intergenic | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr5_3:54436301-54436320 | Msa0818490:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5_3:54436489-54436508 | Msa0818490:intron | 20.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | chr5_3:54435979-54435998 | None:intergenic | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5_3:54436002-54436021 | Msa0818490:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5_3:54436003-54436022 | Msa0818490:intron | 20.0% |
| !!! | TTATCTTTTGTACTTATGTT+TGG | + | chr5_3:54436093-54436112 | Msa0818490:intron | 20.0% |
| !! | TAATAGTAAACAGCTAAAAA+AGG | - | chr5_3:54436293-54436312 | None:intergenic | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr5_3:54436301-54436320 | Msa0818490:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5_3:54436489-54436508 | Msa0818490:intron | 20.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5_3:54436225-54436244 | None:intergenic | 25.0% |
| ! | ACAAAAAACACAATCAAATG+TGG | - | chr5_3:54436378-54436397 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGCGGACAATTA+GGG | - | chr5_3:54436567-54436586 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATGCGGACAATT+AGG | - | chr5_3:54436568-54436587 | None:intergenic | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | chr5_3:54436967-54436986 | None:intergenic | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr5_3:54437012-54437031 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr5_3:54437055-54437074 | Msa0818490:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr5_3:54437066-54437085 | Msa0818490:CDS | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5_3:54436225-54436244 | None:intergenic | 25.0% |
| ! | ACAAAAAACACAATCAAATG+TGG | - | chr5_3:54436378-54436397 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGCGGACAATTA+GGG | - | chr5_3:54436567-54436586 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATGCGGACAATT+AGG | - | chr5_3:54436568-54436587 | None:intergenic | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | chr5_3:54436967-54436986 | None:intergenic | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr5_3:54437012-54437031 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr5_3:54437055-54437074 | Msa0818490:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr5_3:54437066-54437085 | Msa0818490:CDS | 25.0% |
| ATTATAGTTATGAGGAGTTG+AGG | + | chr5_3:54436309-54436328 | Msa0818490:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | chr5_3:54436599-54436618 | Msa0818490:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | - | chr5_3:54436632-54436651 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | chr5_3:54436670-54436689 | Msa0818490:intron | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | + | chr5_3:54436998-54437017 | Msa0818490:CDS | 30.0% | |
| ATTATAGTTATGAGGAGTTG+AGG | + | chr5_3:54436309-54436328 | Msa0818490:intron | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | chr5_3:54436599-54436618 | Msa0818490:intron | 30.0% | |
| AAGAACACAACAATTGATCA+CGG | - | chr5_3:54436632-54436651 | None:intergenic | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | chr5_3:54436670-54436689 | Msa0818490:intron | 30.0% |
| CTCACTCAATACCTTAATTA+TGG | + | chr5_3:54436998-54437017 | Msa0818490:CDS | 30.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr5_3:54435884-54435903 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr5_3:54435892-54435911 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | chr5_3:54435913-54435932 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | chr5_3:54435914-54435933 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | chr5_3:54435915-54435934 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | chr5_3:54435915-54435934 | Msa0818490:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | chr5_3:54435926-54435945 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | chr5_3:54435951-54435970 | Msa0818490:CDS | 35.0% | |
| ! | TTATGTTTGGTTCACCTTGT+AGG | + | chr5_3:54436106-54436125 | Msa0818490:intron | 35.0% |
| CACAAACTATTCAACCTACA+AGG | - | chr5_3:54436123-54436142 | None:intergenic | 35.0% | |
| GTTAATGATTGCAATACGAG+AGG | + | chr5_3:54436407-54436426 | Msa0818490:intron | 35.0% | |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5_3:54436956-54436975 | None:intergenic | 35.0% |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr5_3:54435884-54435903 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr5_3:54435892-54435911 | None:intergenic | 35.0% | |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | chr5_3:54435913-54435932 | None:intergenic | 35.0% |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | chr5_3:54435914-54435933 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | chr5_3:54435915-54435934 | None:intergenic | 35.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | chr5_3:54435915-54435934 | Msa0818490:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | chr5_3:54435926-54435945 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | chr5_3:54435951-54435970 | Msa0818490:CDS | 35.0% | |
| ! | TTATGTTTGGTTCACCTTGT+AGG | + | chr5_3:54436106-54436125 | Msa0818490:intron | 35.0% |
| CACAAACTATTCAACCTACA+AGG | - | chr5_3:54436123-54436142 | None:intergenic | 35.0% | |
| GTTAATGATTGCAATACGAG+AGG | + | chr5_3:54436407-54436426 | Msa0818490:intron | 35.0% | |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5_3:54436956-54436975 | None:intergenic | 35.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5_3:54435901-54435920 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | chr5_3:54435922-54435941 | Msa0818490:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | + | chr5_3:54436312-54436331 | Msa0818490:intron | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | chr5_3:54436547-54436566 | None:intergenic | 40.0% |
| CAACAATTGATCACGGAGTT+GGG | - | chr5_3:54436625-54436644 | None:intergenic | 40.0% | |
| ACAACAATTGATCACGGAGT+TGG | - | chr5_3:54436626-54436645 | None:intergenic | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | - | chr5_3:54436760-54436779 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr5_3:54436798-54436817 | Msa0818490:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr5_3:54436799-54436818 | Msa0818490:CDS | 40.0% | |
| ! | CATTTTGCATCTGGATGCAT+AGG | - | chr5_3:54436916-54436935 | None:intergenic | 40.0% |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr5_3:54436925-54436944 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5_3:54436950-54436969 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5_3:54435901-54435920 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | chr5_3:54435922-54435941 | Msa0818490:CDS | 40.0% |
| ATAGTTATGAGGAGTTGAGG+AGG | + | chr5_3:54436312-54436331 | Msa0818490:intron | 40.0% | |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | chr5_3:54436547-54436566 | None:intergenic | 40.0% |
| CAACAATTGATCACGGAGTT+GGG | - | chr5_3:54436625-54436644 | None:intergenic | 40.0% | |
| ACAACAATTGATCACGGAGT+TGG | - | chr5_3:54436626-54436645 | None:intergenic | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | - | chr5_3:54436760-54436779 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr5_3:54436798-54436817 | Msa0818490:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr5_3:54436799-54436818 | Msa0818490:CDS | 40.0% | |
| ! | CATTTTGCATCTGGATGCAT+AGG | - | chr5_3:54436916-54436935 | None:intergenic | 40.0% |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr5_3:54436925-54436944 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5_3:54436950-54436969 | None:intergenic | 40.0% |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr5_3:54435835-54435854 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | + | chr5_3:54436343-54436362 | Msa0818490:intron | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | - | chr5_3:54436761-54436780 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | chr5_3:54436769-54436788 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr5_3:54436812-54436831 | Msa0818490:CDS | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | chr5_3:54436821-54436840 | Msa0818490:CDS | 45.0% | |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr5_3:54435835-54435854 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | + | chr5_3:54436343-54436362 | Msa0818490:intron | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | - | chr5_3:54436761-54436780 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | chr5_3:54436769-54436788 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr5_3:54436812-54436831 | Msa0818490:CDS | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | chr5_3:54436821-54436840 | Msa0818490:CDS | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTATG+CGG | - | chr5_3:54436577-54436596 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTATG+CGG | - | chr5_3:54436577-54436596 | None:intergenic | 5.0% |
| GCTCCAACACAGCCATAAAC+TGG | - | chr5_3:54436827-54436846 | None:intergenic | 50.0% | |
| GCTCCAACACAGCCATAAAC+TGG | - | chr5_3:54436827-54436846 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 54435811 | 54437096 | 54435811 | ID=Msa0818490;Name=Msa0818490 |
| chr5_3 | mRNA | 54435811 | 54437096 | 54435811 | ID=Msa0818490-mRNA-1;Parent=Msa0818490;Name=Msa0818490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|168 |
| chr5_3 | exon | 54435811 | 54435972 | 54435811 | ID=Msa0818490-mRNA-1:exon:16460;Parent=Msa0818490-mRNA-1 |
| chr5_3 | exon | 54436752 | 54437096 | 54436752 | ID=Msa0818490-mRNA-1:exon:16461;Parent=Msa0818490-mRNA-1 |
| chr5_3 | CDS | 54435811 | 54435972 | 54435811 | ID=Msa0818490-mRNA-1:cds;Parent=Msa0818490-mRNA-1 |
| chr5_3 | CDS | 54436752 | 54437096 | 54436752 | ID=Msa0818490-mRNA-1:cds;Parent=Msa0818490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
