Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819160 | XP_003616758.1 | 97.449 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 1.62e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819160 | sp|Q8L5T5|LBD15_ARATH | 73.054 | 167 | 34 | 4 | 1 | 157 | 1 | 166 | 1.69e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819160 | G7KH28 | 97.449 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 7.75e-141 | 400 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0819160 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0738690 | Msa0819160 | 0.990688 | 7.710568e-184 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819160 | MtrunA17_Chr5g0438091 | 97.449 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 1.49e-144 | 400 |
| Msa0819160 | MtrunA17_Chr3g0129071 | 63.025 | 238 | 43 | 8 | 1 | 195 | 1 | 236 | 6.15e-84 | 248 |
| Msa0819160 | MtrunA17_Chr5g0432451 | 59.052 | 232 | 55 | 7 | 1 | 195 | 1 | 229 | 1.96e-71 | 216 |
| Msa0819160 | MtrunA17_Chr2g0311601 | 63.964 | 111 | 40 | 0 | 36 | 146 | 10 | 120 | 4.63e-49 | 157 |
| Msa0819160 | MtrunA17_Chr5g0437571 | 60.504 | 119 | 47 | 0 | 34 | 152 | 1 | 119 | 6.13e-49 | 157 |
| Msa0819160 | MtrunA17_Chr3g0114061 | 67.619 | 105 | 34 | 0 | 35 | 139 | 4 | 108 | 5.86e-48 | 154 |
| Msa0819160 | MtrunA17_Chr4g0043421 | 62.727 | 110 | 41 | 0 | 29 | 138 | 5 | 114 | 1.69e-47 | 153 |
| Msa0819160 | MtrunA17_Chr4g0058651 | 62.385 | 109 | 41 | 0 | 38 | 146 | 10 | 118 | 9.36e-45 | 147 |
| Msa0819160 | MtrunA17_Chr7g0227511 | 62.617 | 107 | 40 | 0 | 36 | 142 | 8 | 114 | 1.56e-44 | 145 |
| Msa0819160 | MtrunA17_Chr3g0106101 | 55.645 | 124 | 50 | 1 | 37 | 155 | 5 | 128 | 1.15e-43 | 144 |
| Msa0819160 | MtrunA17_Chr3g0117121 | 59.091 | 110 | 45 | 0 | 37 | 146 | 8 | 117 | 6.57e-43 | 142 |
| Msa0819160 | MtrunA17_Chr6g0449641 | 60.577 | 104 | 41 | 0 | 36 | 139 | 6 | 109 | 9.04e-43 | 140 |
| Msa0819160 | MtrunA17_Chr5g0402611 | 60.748 | 107 | 42 | 0 | 36 | 142 | 5 | 111 | 2.45e-42 | 144 |
| Msa0819160 | MtrunA17_Chr3g0115431 | 59.813 | 107 | 43 | 0 | 36 | 142 | 6 | 112 | 2.77e-42 | 141 |
| Msa0819160 | MtrunA17_Chr4g0030001 | 55.263 | 114 | 50 | 1 | 38 | 150 | 23 | 136 | 4.92e-42 | 140 |
| Msa0819160 | MtrunA17_Chr6g0449651 | 57.009 | 107 | 46 | 0 | 36 | 142 | 64 | 170 | 6.53e-41 | 137 |
| Msa0819160 | MtrunA17_Chr3g0113891 | 59.804 | 102 | 41 | 0 | 36 | 137 | 11 | 112 | 1.54e-40 | 136 |
| Msa0819160 | MtrunA17_Chr3g0097221 | 55.963 | 109 | 48 | 0 | 36 | 144 | 4 | 112 | 6.26e-40 | 137 |
| Msa0819160 | MtrunA17_Chr1g0200201 | 54.955 | 111 | 50 | 0 | 40 | 150 | 73 | 183 | 6.85e-40 | 135 |
| Msa0819160 | MtrunA17_Chr7g0245871 | 62.745 | 102 | 37 | 1 | 39 | 139 | 27 | 128 | 1.30e-39 | 135 |
| Msa0819160 | MtrunA17_Chr8g0353981 | 43.590 | 156 | 88 | 0 | 36 | 191 | 4 | 159 | 8.40e-39 | 132 |
| Msa0819160 | MtrunA17_Chr5g0437401 | 55.660 | 106 | 47 | 0 | 36 | 141 | 8 | 113 | 9.01e-39 | 131 |
| Msa0819160 | MtrunA17_Chr7g0260971 | 53.333 | 105 | 48 | 1 | 36 | 139 | 11 | 115 | 1.64e-36 | 126 |
| Msa0819160 | MtrunA17_Chr7g0225111 | 53.333 | 105 | 49 | 0 | 40 | 144 | 6 | 110 | 4.64e-36 | 122 |
| Msa0819160 | MtrunA17_Chr8g0351701 | 47.794 | 136 | 65 | 3 | 39 | 168 | 23 | 158 | 4.57e-35 | 123 |
| Msa0819160 | MtrunA17_Chr5g0444351 | 46.457 | 127 | 65 | 1 | 40 | 166 | 6 | 129 | 2.35e-34 | 119 |
| Msa0819160 | MtrunA17_Chr8g0351721 | 50.435 | 115 | 56 | 1 | 39 | 152 | 18 | 132 | 3.56e-34 | 120 |
| Msa0819160 | MtrunA17_Chr1g0184281 | 53.465 | 101 | 46 | 1 | 39 | 138 | 15 | 115 | 4.57e-34 | 120 |
| Msa0819160 | MtrunA17_Chr6g0460951 | 49.107 | 112 | 56 | 1 | 38 | 148 | 39 | 150 | 1.78e-33 | 119 |
| Msa0819160 | MtrunA17_Chr7g0261031 | 53.398 | 103 | 45 | 2 | 38 | 138 | 7 | 108 | 2.19e-32 | 116 |
| Msa0819160 | MtrunA17_Chr1g0184271 | 53.922 | 102 | 44 | 2 | 39 | 138 | 12 | 112 | 3.47e-32 | 116 |
| Msa0819160 | MtrunA17_Chr5g0435641 | 50.505 | 99 | 48 | 1 | 38 | 135 | 6 | 104 | 3.00e-30 | 109 |
| Msa0819160 | MtrunA17_Chr8g0374601 | 47.115 | 104 | 55 | 0 | 39 | 142 | 26 | 129 | 2.11e-29 | 110 |
| Msa0819160 | MtrunA17_Chr7g0245861 | 54.444 | 90 | 38 | 2 | 39 | 125 | 12 | 101 | 2.99e-27 | 100 |
| Msa0819160 | MtrunA17_Chr8g0374591 | 41.739 | 115 | 64 | 1 | 39 | 150 | 8 | 122 | 3.81e-27 | 100 |
| Msa0819160 | MtrunA17_Chr6g0460941 | 45.161 | 93 | 50 | 1 | 35 | 126 | 3 | 95 | 1.56e-26 | 97.4 |
| Msa0819160 | MtrunA17_Chr6g0452691 | 39.806 | 103 | 61 | 1 | 32 | 133 | 2 | 104 | 2.91e-25 | 96.7 |
| Msa0819160 | MtrunA17_Chr8g0374581 | 46.667 | 105 | 55 | 1 | 39 | 142 | 8 | 112 | 2.91e-25 | 97.8 |
| Msa0819160 | MtrunA17_Chr4g0059901 | 37.705 | 122 | 76 | 0 | 36 | 157 | 7 | 128 | 9.01e-25 | 97.4 |
| Msa0819160 | MtrunA17_Chr6g0452671 | 38.235 | 102 | 63 | 0 | 35 | 136 | 7 | 108 | 1.08e-23 | 93.2 |
| Msa0819160 | MtrunA17_Chr6g0452661 | 37.755 | 98 | 60 | 1 | 40 | 136 | 10 | 107 | 6.97e-22 | 89.7 |
| Msa0819160 | MtrunA17_Chr4g0040831 | 35.185 | 108 | 68 | 1 | 40 | 147 | 16 | 121 | 3.53e-21 | 86.7 |
| Msa0819160 | MtrunA17_Chr2g0330201 | 39.048 | 105 | 62 | 2 | 36 | 139 | 16 | 119 | 8.24e-21 | 87.4 |
| Msa0819160 | MtrunA17_Chr8g0342351 | 35.780 | 109 | 68 | 2 | 36 | 143 | 9 | 116 | 3.19e-20 | 85.5 |
| Msa0819160 | MtrunA17_Chr5g0439111 | 34.579 | 107 | 66 | 2 | 34 | 136 | 1 | 107 | 1.33e-19 | 83.2 |
| Msa0819160 | MtrunA17_Chr4g0055441 | 35.714 | 98 | 62 | 1 | 40 | 136 | 3 | 100 | 2.41e-19 | 80.5 |
| Msa0819160 | MtrunA17_Chr2g0326041 | 62.000 | 50 | 19 | 0 | 38 | 87 | 32 | 81 | 6.35e-18 | 75.1 |
| Msa0819160 | MtrunA17_Chr2g0326051 | 50.746 | 67 | 33 | 0 | 84 | 150 | 5 | 71 | 1.18e-16 | 72.8 |
| Msa0819160 | MtrunA17_Chr4g0046201 | 32.955 | 88 | 59 | 0 | 38 | 125 | 5 | 92 | 5.56e-14 | 68.6 |
| Msa0819160 | MtrunA17_Chr8g0337271 | 27.891 | 147 | 99 | 2 | 40 | 185 | 11 | 151 | 1.96e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819160 | AT2G40470.1 | 73.054 | 167 | 34 | 4 | 1 | 157 | 1 | 166 | 1.72e-71 | 216 |
| Msa0819160 | AT2G40470.2 | 79.851 | 134 | 24 | 1 | 27 | 157 | 8 | 141 | 4.49e-67 | 204 |
| Msa0819160 | AT2G30340.1 | 62.424 | 165 | 49 | 2 | 1 | 152 | 1 | 165 | 4.60e-67 | 206 |
| Msa0819160 | AT2G30340.2 | 74.797 | 123 | 31 | 0 | 30 | 152 | 44 | 166 | 4.29e-65 | 201 |
| Msa0819160 | AT2G30130.1 | 66.990 | 103 | 34 | 0 | 37 | 139 | 6 | 108 | 7.32e-46 | 150 |
| Msa0819160 | AT1G31320.1 | 60.345 | 116 | 46 | 0 | 36 | 151 | 10 | 125 | 8.65e-46 | 149 |
| Msa0819160 | AT5G63090.4 | 53.285 | 137 | 61 | 1 | 37 | 170 | 9 | 145 | 2.28e-43 | 143 |
| Msa0819160 | AT5G63090.3 | 53.285 | 137 | 61 | 1 | 37 | 170 | 9 | 145 | 2.28e-43 | 143 |
| Msa0819160 | AT5G63090.2 | 53.285 | 137 | 61 | 1 | 37 | 170 | 9 | 145 | 2.28e-43 | 143 |
| Msa0819160 | AT5G63090.1 | 53.285 | 137 | 61 | 1 | 37 | 170 | 9 | 145 | 2.28e-43 | 143 |
| Msa0819160 | AT3G27650.1 | 60.748 | 107 | 42 | 0 | 36 | 142 | 36 | 142 | 2.97e-43 | 142 |
| Msa0819160 | AT5G66870.1 | 55.072 | 138 | 57 | 3 | 36 | 173 | 4 | 136 | 9.59e-43 | 145 |
| Msa0819160 | AT1G07900.1 | 54.867 | 113 | 51 | 0 | 38 | 150 | 32 | 144 | 4.95e-42 | 140 |
| Msa0819160 | AT1G16530.1 | 50.704 | 142 | 63 | 3 | 23 | 162 | 3 | 139 | 8.02e-42 | 139 |
| Msa0819160 | AT2G28500.1 | 54.867 | 113 | 51 | 0 | 38 | 150 | 54 | 166 | 1.81e-41 | 140 |
| Msa0819160 | AT2G23660.2 | 57.944 | 107 | 45 | 0 | 36 | 142 | 2 | 108 | 6.97e-41 | 140 |
| Msa0819160 | AT2G23660.3 | 57.944 | 107 | 45 | 0 | 36 | 142 | 2 | 108 | 6.97e-41 | 140 |
| Msa0819160 | AT2G23660.1 | 57.944 | 107 | 45 | 0 | 36 | 142 | 2 | 108 | 6.97e-41 | 140 |
| Msa0819160 | AT1G65620.1 | 61.468 | 109 | 42 | 0 | 35 | 143 | 5 | 113 | 1.58e-40 | 137 |
| Msa0819160 | AT1G65620.4 | 61.468 | 109 | 42 | 0 | 35 | 143 | 5 | 113 | 1.58e-40 | 137 |
| Msa0819160 | AT1G65620.3 | 61.468 | 109 | 42 | 0 | 35 | 143 | 5 | 113 | 1.58e-40 | 137 |
| Msa0819160 | AT1G65620.5 | 61.468 | 109 | 42 | 0 | 35 | 143 | 5 | 113 | 1.58e-40 | 137 |
| Msa0819160 | AT1G65620.2 | 61.468 | 109 | 42 | 0 | 35 | 143 | 5 | 113 | 1.58e-40 | 137 |
| Msa0819160 | AT3G11090.1 | 52.500 | 120 | 57 | 0 | 36 | 155 | 8 | 127 | 4.77e-38 | 129 |
| Msa0819160 | AT3G26620.1 | 55.000 | 100 | 45 | 0 | 40 | 139 | 6 | 105 | 4.47e-37 | 125 |
| Msa0819160 | AT3G26660.1 | 55.000 | 100 | 45 | 0 | 40 | 139 | 6 | 105 | 5.20e-37 | 125 |
| Msa0819160 | AT2G42430.1 | 47.656 | 128 | 66 | 1 | 29 | 155 | 5 | 132 | 6.94e-36 | 126 |
| Msa0819160 | AT3G03760.1 | 51.786 | 112 | 53 | 1 | 38 | 148 | 50 | 161 | 6.00e-35 | 124 |
| Msa0819160 | AT4G00210.1 | 53.922 | 102 | 46 | 1 | 39 | 139 | 11 | 112 | 1.05e-33 | 120 |
| Msa0819160 | AT2G31310.1 | 51.961 | 102 | 48 | 1 | 38 | 138 | 6 | 107 | 9.34e-33 | 116 |
| Msa0819160 | AT4G00220.1 | 55.769 | 104 | 45 | 1 | 42 | 144 | 20 | 123 | 1.42e-32 | 117 |
| Msa0819160 | AT3G58190.1 | 52.941 | 102 | 45 | 2 | 39 | 138 | 11 | 111 | 1.89e-32 | 116 |
| Msa0819160 | AT5G06080.1 | 49.107 | 112 | 56 | 1 | 38 | 148 | 6 | 117 | 5.43e-32 | 114 |
| Msa0819160 | AT2G45420.1 | 50.962 | 104 | 50 | 1 | 42 | 144 | 40 | 143 | 8.29e-31 | 113 |
| Msa0819160 | AT2G42440.1 | 50.485 | 103 | 48 | 2 | 38 | 138 | 6 | 107 | 1.75e-30 | 112 |
| Msa0819160 | AT2G45410.1 | 51.515 | 99 | 47 | 1 | 42 | 139 | 19 | 117 | 1.29e-29 | 108 |
| Msa0819160 | AT3G50510.1 | 41.026 | 117 | 69 | 0 | 37 | 153 | 10 | 126 | 1.45e-26 | 100 |
| Msa0819160 | AT3G50510.2 | 41.026 | 117 | 69 | 0 | 37 | 153 | 10 | 126 | 1.45e-26 | 100 |
| Msa0819160 | AT3G47870.1 | 38.889 | 108 | 66 | 0 | 36 | 143 | 33 | 140 | 1.20e-25 | 101 |
| Msa0819160 | AT1G72980.1 | 40.385 | 104 | 62 | 0 | 36 | 139 | 10 | 113 | 1.50e-22 | 90.9 |
| Msa0819160 | AT5G35900.1 | 37.500 | 104 | 65 | 0 | 36 | 139 | 2 | 105 | 5.31e-22 | 89.4 |
| Msa0819160 | AT3G13850.1 | 33.654 | 104 | 69 | 0 | 40 | 143 | 37 | 140 | 8.27e-20 | 84.7 |
| Msa0819160 | AT1G06280.1 | 46.753 | 77 | 41 | 0 | 40 | 116 | 25 | 101 | 1.42e-18 | 80.1 |
| Msa0819160 | AT4G22700.1 | 39.216 | 102 | 51 | 4 | 40 | 132 | 6 | 105 | 1.30e-15 | 72.0 |
| Msa0819160 | AT2G19820.1 | 33.333 | 90 | 59 | 1 | 38 | 126 | 11 | 100 | 4.43e-15 | 68.9 |
| Msa0819160 | AT5G15060.1 | 38.202 | 89 | 49 | 3 | 27 | 110 | 3 | 90 | 8.60e-12 | 60.8 |
| Msa0819160 | AT1G36000.1 | 30.108 | 93 | 63 | 2 | 34 | 125 | 4 | 95 | 2.08e-11 | 59.3 |
Find 44 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTTTGGTGTACTTAAA+AGG | 0.175258 | 5_3:+55278933 | None:intergenic |
| TTCTATCTTCAATTCCCTTT+TGG | 0.180637 | 5_3:-55278908 | Msa0819160:five_prime_UTR |
| GGAGAGAAATATGGAGAAAA+AGG | 0.233084 | 5_3:+55278482 | None:intergenic |
| CTTGCAAATTTAATCAAAAT+AGG | 0.235336 | 5_3:+55277434 | None:intergenic |
| ACATGTATAAGAGTTATTTA+TGG | 0.235668 | 5_3:+55278856 | None:intergenic |
| GCTTCTGTCCACAAAGTCTT+TGG | 0.267396 | 5_3:-55278440 | Msa0819160:CDS |
| TTTCAAAAGGGAAGAATGTT+AGG | 0.277293 | 5_3:-55278581 | Msa0819160:CDS |
| GGAATTGAAGATAGAAAATA+TGG | 0.286873 | 5_3:+55278915 | None:intergenic |
| AGGCTAAGAGATCCAGTTTA+TGG | 0.306813 | 5_3:-55277696 | Msa0819160:CDS |
| GCATCTGCTCTTTGATTCTC+TGG | 0.341032 | 5_3:+55277750 | None:intergenic |
| CTTTCCAATCATATATCTTC+AGG | 0.349103 | 5_3:+55277290 | None:intergenic |
| GGAAGAATGTTAGGTCCTTC+AGG | 0.355019 | 5_3:-55278572 | Msa0819160:CDS |
| GGCTCATGAGGAGAGAAATA+TGG | 0.368976 | 5_3:+55278473 | None:intergenic |
| GCACCCATGCATCCATAAAC+TGG | 0.381798 | 5_3:+55277684 | None:intergenic |
| ACTTGAAATTGAGCTATAAC+TGG | 0.426496 | 5_3:+55277467 | None:intergenic |
| CAACAAGTTCAATCATTACT+AGG | 0.447623 | 5_3:-55277645 | Msa0819160:CDS |
| TGCTGGCACCAAAGACTTTG+TGG | 0.448216 | 5_3:+55278432 | None:intergenic |
| TAGCAACTTTGAGACGTTGC+TGG | 0.449895 | 5_3:+55278415 | None:intergenic |
| CAACGTCTCAAAGTTGCTAT+TGG | 0.452802 | 5_3:-55278411 | Msa0819160:intron |
| TGAAGATAGAAAATATGGTT+TGG | 0.457738 | 5_3:+55278920 | None:intergenic |
| TAGTTTATGAAGCAAATGTA+AGG | 0.466219 | 5_3:-55277716 | Msa0819160:CDS |
| GAAGTGAAGGAGAGTCCAAA+AGG | 0.476574 | 5_3:+55278893 | None:intergenic |
| TTTGAGACGAAGGTGTGCTC+AGG | 0.487559 | 5_3:-55278510 | Msa0819160:CDS |
| AAGAATAGATAGAGAAGTGA+AGG | 0.490768 | 5_3:+55278880 | None:intergenic |
| TAAATAGAAGAAGGAAGCCT+TGG | 0.522625 | 5_3:+55277510 | None:intergenic |
| GAGATAGGAAAGAAGAGAGA+GGG | 0.526552 | 5_3:-55278614 | Msa0819160:CDS |
| AGATCCAGTTTATGGATGCA+TGG | 0.526865 | 5_3:-55277688 | Msa0819160:CDS |
| ATTGATACATCATCTGAAGA+AGG | 0.534416 | 5_3:+55277561 | None:intergenic |
| GCAAACTTCTGAGGCTCATG+AGG | 0.547685 | 5_3:+55278461 | None:intergenic |
| ATGCTTGAATGTCCAGAGAA+AGG | 0.549398 | 5_3:-55278823 | Msa0819160:intron |
| TGAGATAGGAAAGAAGAGAG+AGG | 0.549797 | 5_3:-55278615 | Msa0819160:CDS |
| AATTCATAAATACAAACTCA+TGG | 0.552933 | 5_3:-55277598 | Msa0819160:CDS |
| GAAATTGAGCTATAACTGGT+AGG | 0.562061 | 5_3:+55277471 | None:intergenic |
| TGTTGTGTGTAAATAGAAGA+AGG | 0.566644 | 5_3:+55277501 | None:intergenic |
| AAGTGAAGGAGAGTCCAAAA+GGG | 0.576297 | 5_3:+55278894 | None:intergenic |
| AAAAGACTATATATAAGTCA+TGG | 0.576869 | 5_3:-55277365 | Msa0819160:three_prime_UTR |
| GATCCAGTTTATGGATGCAT+GGG | 0.578062 | 5_3:-55277687 | Msa0819160:CDS |
| TGGACAGAAGCAAACTTCTG+AGG | 0.589514 | 5_3:+55278452 | None:intergenic |
| AAAAGCTTGCATGCAGCACA+AGG | 0.594669 | 5_3:+55278530 | None:intergenic |
| GCATGCAGCACAAGGAGTAG+TGG | 0.596320 | 5_3:+55278538 | None:intergenic |
| GTGGTATTTAGTGTTCCTGA+AGG | 0.618012 | 5_3:+55278557 | None:intergenic |
| CACCTTCAACATCACTACCA+AGG | 0.661627 | 5_3:-55277527 | Msa0819160:CDS |
| AGCCTTGGTAGTGATGTTGA+AGG | 0.670441 | 5_3:+55277525 | None:intergenic |
| CTTGGTAGTGATGTTGAAGG+TGG | 0.715413 | 5_3:+55277528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGATAACAAAAAATTT+AGG | - | chr5_3:55277938-55277957 | Msa0819160:intron | 10.0% |
| !!! | AATTGATAACAAAAAATTTA+GGG | - | chr5_3:55277939-55277958 | Msa0819160:intron | 10.0% |
| !! | TTAAAAAATATTCTAATTAG+TGG | - | chr5_3:55278135-55278154 | Msa0819160:intron | 10.0% |
| !! | AAAATATAAAAAAAATTGAG+AGG | + | chr5_3:55278209-55278228 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTTATTTAGA+GGG | + | chr5_3:55278312-55278331 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTGTTATTTAG+AGG | + | chr5_3:55278313-55278332 | None:intergenic | 10.0% |
| !!! | AAATTGATAACAAAAAATTT+AGG | - | chr5_3:55277938-55277957 | Msa0819160:intron | 10.0% |
| !!! | AATTGATAACAAAAAATTTA+GGG | - | chr5_3:55277939-55277958 | Msa0819160:intron | 10.0% |
| !! | TTAAAAAATATTCTAATTAG+TGG | - | chr5_3:55278135-55278154 | Msa0819160:intron | 10.0% |
| !! | AAAATATAAAAAAAATTGAG+AGG | + | chr5_3:55278209-55278228 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTTATTTAGA+GGG | + | chr5_3:55278312-55278331 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTGTTATTTAG+AGG | + | chr5_3:55278313-55278332 | None:intergenic | 10.0% |
| !!! | AAATTACAAATTTTGTCATA+GGG | + | chr5_3:55277428-55277447 | None:intergenic | 15.0% |
| !!! | AAAATTACAAATTTTGTCAT+AGG | + | chr5_3:55277429-55277448 | None:intergenic | 15.0% |
| !!! | TATTTCTACTAATTAATAGA+TGG | - | chr5_3:55277451-55277470 | Msa0819160:CDS | 15.0% |
| !! | TCATATATGCTTTAATATAT+AGG | - | chr5_3:55277546-55277565 | Msa0819160:CDS | 15.0% |
| !! | CATATATGCTTTAATATATA+GGG | - | chr5_3:55277547-55277566 | Msa0819160:CDS | 15.0% |
| !! | ATATATGCTTTAATATATAG+GGG | - | chr5_3:55277548-55277567 | Msa0819160:CDS | 15.0% |
| !! | ATATTTGTAATAATGAACTA+AGG | + | chr5_3:55277828-55277847 | None:intergenic | 15.0% |
| !!! | TTAGACAACATTTTTTTAAT+CGG | + | chr5_3:55278025-55278044 | None:intergenic | 15.0% |
| !!! | AAATAATTTGTTATTTAGAG+GGG | + | chr5_3:55278311-55278330 | None:intergenic | 15.0% |
| !!! | AAATTACAAATTTTGTCATA+GGG | + | chr5_3:55277428-55277447 | None:intergenic | 15.0% |
| !!! | AAAATTACAAATTTTGTCAT+AGG | + | chr5_3:55277429-55277448 | None:intergenic | 15.0% |
| !!! | TATTTCTACTAATTAATAGA+TGG | - | chr5_3:55277451-55277470 | Msa0819160:CDS | 15.0% |
| !! | TCATATATGCTTTAATATAT+AGG | - | chr5_3:55277546-55277565 | Msa0819160:CDS | 15.0% |
| !! | CATATATGCTTTAATATATA+GGG | - | chr5_3:55277547-55277566 | Msa0819160:CDS | 15.0% |
| !! | ATATATGCTTTAATATATAG+GGG | - | chr5_3:55277548-55277567 | Msa0819160:CDS | 15.0% |
| !! | ATATTTGTAATAATGAACTA+AGG | + | chr5_3:55277828-55277847 | None:intergenic | 15.0% |
| !!! | TTAGACAACATTTTTTTAAT+CGG | + | chr5_3:55278025-55278044 | None:intergenic | 15.0% |
| !!! | AAATAATTTGTTATTTAGAG+GGG | + | chr5_3:55278311-55278330 | None:intergenic | 15.0% |
| !! | ACATGTATAAGAGTTATTTA+TGG | + | chr5_3:55277345-55277364 | None:intergenic | 20.0% |
| !! | TATATGCTTTAATATATAGG+GGG | - | chr5_3:55277549-55277568 | Msa0819160:CDS | 20.0% |
| !!! | TTGATTTTATTTTAAGTCGA+TGG | - | chr5_3:55277881-55277900 | Msa0819160:intron | 20.0% |
| !! | ATGGATATACATTATATAAG+AGG | - | chr5_3:55277900-55277919 | Msa0819160:intron | 20.0% |
| !! | TATACATTATATAAGAGGTT+TGG | - | chr5_3:55277905-55277924 | Msa0819160:intron | 20.0% |
| !! | TTGTAAAAGTCCTAAATTAT+TGG | + | chr5_3:55277989-55278008 | None:intergenic | 20.0% |
| !! | TGAAAAAAAAGTAACATTTG+TGG | - | chr5_3:55278398-55278417 | Msa0819160:intron | 20.0% |
| !! | AATTCATAAATACAAACTCA+TGG | - | chr5_3:55278600-55278619 | Msa0819160:CDS | 20.0% |
| !! | CTTGCAAATTTAATCAAAAT+AGG | + | chr5_3:55278767-55278786 | None:intergenic | 20.0% |
| !! | AAAAGACTATATATAAGTCA+TGG | - | chr5_3:55278833-55278852 | Msa0819160:exon | 20.0% |
| !! | ACATGTATAAGAGTTATTTA+TGG | + | chr5_3:55277345-55277364 | None:intergenic | 20.0% |
| !! | TATATGCTTTAATATATAGG+GGG | - | chr5_3:55277549-55277568 | Msa0819160:CDS | 20.0% |
| !!! | TTGATTTTATTTTAAGTCGA+TGG | - | chr5_3:55277881-55277900 | Msa0819160:intron | 20.0% |
| !! | ATGGATATACATTATATAAG+AGG | - | chr5_3:55277900-55277919 | Msa0819160:intron | 20.0% |
| !! | TATACATTATATAAGAGGTT+TGG | - | chr5_3:55277905-55277924 | Msa0819160:intron | 20.0% |
| !! | TTGTAAAAGTCCTAAATTAT+TGG | + | chr5_3:55277989-55278008 | None:intergenic | 20.0% |
| !! | TGAAAAAAAAGTAACATTTG+TGG | - | chr5_3:55278398-55278417 | Msa0819160:intron | 20.0% |
| !! | AATTCATAAATACAAACTCA+TGG | - | chr5_3:55278600-55278619 | Msa0819160:CDS | 20.0% |
| !! | CTTGCAAATTTAATCAAAAT+AGG | + | chr5_3:55278767-55278786 | None:intergenic | 20.0% |
| !! | AAAAGACTATATATAAGTCA+TGG | - | chr5_3:55278833-55278852 | Msa0819160:exon | 20.0% |
| ! | TGAAGATAGAAAATATGGTT+TGG | + | chr5_3:55277281-55277300 | None:intergenic | 25.0% |
| ! | GGAATTGAAGATAGAAAATA+TGG | + | chr5_3:55277286-55277305 | None:intergenic | 25.0% |
| !! | AAAAGTATGCTTGAAAAGTT+TGG | + | chr5_3:55277480-55277499 | None:intergenic | 25.0% |
| ! | AAAAGTCCTAAATTATTGGT+TGG | + | chr5_3:55277985-55278004 | None:intergenic | 25.0% |
| !!! | AAATGGATTACTAAACAATG+TGG | - | chr5_3:55278094-55278113 | Msa0819160:intron | 25.0% |
| !!! | AATGGATTACTAAACAATGT+GGG | - | chr5_3:55278095-55278114 | Msa0819160:intron | 25.0% |
| ! | AAAAAGTAACATTTGTGGTA+TGG | - | chr5_3:55278403-55278422 | Msa0819160:intron | 25.0% |
| ! | GTATGGTTATGTGTTTAATT+AGG | - | chr5_3:55278420-55278439 | Msa0819160:CDS | 25.0% |
| ! | TAGTTTATGAAGCAAATGTA+AGG | - | chr5_3:55278482-55278501 | Msa0819160:CDS | 25.0% |
| !! | TTTTCCTGAAGATATATGAT+TGG | - | chr5_3:55278904-55278923 | Msa0819160:five_prime_UTR | 25.0% |
| ! | TGAAGATAGAAAATATGGTT+TGG | + | chr5_3:55277281-55277300 | None:intergenic | 25.0% |
| ! | GGAATTGAAGATAGAAAATA+TGG | + | chr5_3:55277286-55277305 | None:intergenic | 25.0% |
| !! | AAAAGTATGCTTGAAAAGTT+TGG | + | chr5_3:55277480-55277499 | None:intergenic | 25.0% |
| ! | AAAAGTCCTAAATTATTGGT+TGG | + | chr5_3:55277985-55278004 | None:intergenic | 25.0% |
| !!! | AAATGGATTACTAAACAATG+TGG | - | chr5_3:55278094-55278113 | Msa0819160:intron | 25.0% |
| !!! | AATGGATTACTAAACAATGT+GGG | - | chr5_3:55278095-55278114 | Msa0819160:intron | 25.0% |
| ! | AAAAAGTAACATTTGTGGTA+TGG | - | chr5_3:55278403-55278422 | Msa0819160:intron | 25.0% |
| ! | GTATGGTTATGTGTTTAATT+AGG | - | chr5_3:55278420-55278439 | Msa0819160:CDS | 25.0% |
| ! | TAGTTTATGAAGCAAATGTA+AGG | - | chr5_3:55278482-55278501 | Msa0819160:CDS | 25.0% |
| !! | TTTTCCTGAAGATATATGAT+TGG | - | chr5_3:55278904-55278923 | Msa0819160:five_prime_UTR | 25.0% |
| !! | TATGGTTTGGTGTACTTAAA+AGG | + | chr5_3:55277268-55277287 | None:intergenic | 30.0% |
| ! | TTCTATCTTCAATTCCCTTT+TGG | - | chr5_3:55277290-55277309 | Msa0819160:three_prime_UTR | 30.0% |
| AAGAATAGATAGAGAAGTGA+AGG | + | chr5_3:55277321-55277340 | None:intergenic | 30.0% | |
| ! | GGTGATGATTCTTTTCAAAA+GGG | - | chr5_3:55277605-55277624 | Msa0819160:CDS | 30.0% |
| TTTCAAAAGGGAAGAATGTT+AGG | - | chr5_3:55277617-55277636 | Msa0819160:CDS | 30.0% | |
| GATTTGCCAACCAATAATTT+AGG | - | chr5_3:55277976-55277995 | Msa0819160:intron | 30.0% | |
| ACTAAAATTCCCACATACAT+AGG | - | chr5_3:55278048-55278067 | Msa0819160:intron | 30.0% | |
| CTAAAATTCCCACATACATA+GGG | - | chr5_3:55278049-55278068 | Msa0819160:intron | 30.0% | |
| ATATACCAAGTTAACCTCAA+AGG | + | chr5_3:55278162-55278181 | None:intergenic | 30.0% | |
| CTCATGAACTGATCAATATA+TGG | + | chr5_3:55278251-55278270 | None:intergenic | 30.0% | |
| CATATATTGATCAGTTCATG+AGG | - | chr5_3:55278249-55278268 | Msa0819160:intron | 30.0% | |
| ATATAGTCCTGATCTAATTG+TGG | + | chr5_3:55278276-55278295 | None:intergenic | 30.0% | |
| ATTCAAGTAGAATGCACATA+AGG | + | chr5_3:55278347-55278366 | None:intergenic | 30.0% | |
| TCTACTTGAATACAAAGCAA+TGG | - | chr5_3:55278356-55278375 | Msa0819160:intron | 30.0% | |
| TGGTTATGTGTTTAATTAGG+AGG | - | chr5_3:55278423-55278442 | Msa0819160:CDS | 30.0% | |
| CAACAAGTTCAATCATTACT+AGG | - | chr5_3:55278553-55278572 | Msa0819160:CDS | 30.0% | |
| ATTGATACATCATCTGAAGA+AGG | + | chr5_3:55278640-55278659 | None:intergenic | 30.0% | |
| TGTTGTGTGTAAATAGAAGA+AGG | + | chr5_3:55278700-55278719 | None:intergenic | 30.0% | |
| ACTTGAAATTGAGCTATAAC+TGG | + | chr5_3:55278734-55278753 | None:intergenic | 30.0% | |
| CTTTCCAATCATATATCTTC+AGG | + | chr5_3:55278911-55278930 | None:intergenic | 30.0% | |
| !! | TATGGTTTGGTGTACTTAAA+AGG | + | chr5_3:55277268-55277287 | None:intergenic | 30.0% |
| ! | TTCTATCTTCAATTCCCTTT+TGG | - | chr5_3:55277290-55277309 | Msa0819160:three_prime_UTR | 30.0% |
| AAGAATAGATAGAGAAGTGA+AGG | + | chr5_3:55277321-55277340 | None:intergenic | 30.0% | |
| ! | GGTGATGATTCTTTTCAAAA+GGG | - | chr5_3:55277605-55277624 | Msa0819160:CDS | 30.0% |
| TTTCAAAAGGGAAGAATGTT+AGG | - | chr5_3:55277617-55277636 | Msa0819160:CDS | 30.0% | |
| GATTTGCCAACCAATAATTT+AGG | - | chr5_3:55277976-55277995 | Msa0819160:intron | 30.0% | |
| ACTAAAATTCCCACATACAT+AGG | - | chr5_3:55278048-55278067 | Msa0819160:intron | 30.0% | |
| CTAAAATTCCCACATACATA+GGG | - | chr5_3:55278049-55278068 | Msa0819160:intron | 30.0% | |
| ATATACCAAGTTAACCTCAA+AGG | + | chr5_3:55278162-55278181 | None:intergenic | 30.0% | |
| CTCATGAACTGATCAATATA+TGG | + | chr5_3:55278251-55278270 | None:intergenic | 30.0% | |
| CATATATTGATCAGTTCATG+AGG | - | chr5_3:55278249-55278268 | Msa0819160:intron | 30.0% | |
| ATATAGTCCTGATCTAATTG+TGG | + | chr5_3:55278276-55278295 | None:intergenic | 30.0% | |
| ATTCAAGTAGAATGCACATA+AGG | + | chr5_3:55278347-55278366 | None:intergenic | 30.0% | |
| TCTACTTGAATACAAAGCAA+TGG | - | chr5_3:55278356-55278375 | Msa0819160:intron | 30.0% | |
| TGGTTATGTGTTTAATTAGG+AGG | - | chr5_3:55278423-55278442 | Msa0819160:CDS | 30.0% | |
| CAACAAGTTCAATCATTACT+AGG | - | chr5_3:55278553-55278572 | Msa0819160:CDS | 30.0% | |
| ATTGATACATCATCTGAAGA+AGG | + | chr5_3:55278640-55278659 | None:intergenic | 30.0% | |
| TGTTGTGTGTAAATAGAAGA+AGG | + | chr5_3:55278700-55278719 | None:intergenic | 30.0% | |
| ACTTGAAATTGAGCTATAAC+TGG | + | chr5_3:55278734-55278753 | None:intergenic | 30.0% | |
| CTTTCCAATCATATATCTTC+AGG | + | chr5_3:55278911-55278930 | None:intergenic | 30.0% | |
| ! | AGAGTTTTCTTACCTTTCTC+TGG | + | chr5_3:55277390-55277409 | None:intergenic | 35.0% |
| !!! | GGGAGATTTTTTGATGAGAT+AGG | - | chr5_3:55277569-55277588 | Msa0819160:CDS | 35.0% |
| ! | GGGTGATGATTCTTTTCAAA+AGG | - | chr5_3:55277604-55277623 | Msa0819160:CDS | 35.0% |
| GGAGAGAAATATGGAGAAAA+AGG | + | chr5_3:55277719-55277738 | None:intergenic | 35.0% | |
| GGAGAATCATAGTTGCTAAA+TGG | - | chr5_3:55278077-55278096 | Msa0819160:intron | 35.0% | |
| ! | TTCTAATTAGTGGACCTTTG+AGG | - | chr5_3:55278145-55278164 | Msa0819160:intron | 35.0% |
| TAAATAGAAGAAGGAAGCCT+TGG | + | chr5_3:55278691-55278710 | None:intergenic | 35.0% | |
| GAAATTGAGCTATAACTGGT+AGG | + | chr5_3:55278730-55278749 | None:intergenic | 35.0% | |
| ! | AGAGTTTTCTTACCTTTCTC+TGG | + | chr5_3:55277390-55277409 | None:intergenic | 35.0% |
| !!! | GGGAGATTTTTTGATGAGAT+AGG | - | chr5_3:55277569-55277588 | Msa0819160:CDS | 35.0% |
| ! | GGGTGATGATTCTTTTCAAA+AGG | - | chr5_3:55277604-55277623 | Msa0819160:CDS | 35.0% |
| GGAGAGAAATATGGAGAAAA+AGG | + | chr5_3:55277719-55277738 | None:intergenic | 35.0% | |
| GGAGAATCATAGTTGCTAAA+TGG | - | chr5_3:55278077-55278096 | Msa0819160:intron | 35.0% | |
| ! | TTCTAATTAGTGGACCTTTG+AGG | - | chr5_3:55278145-55278164 | Msa0819160:intron | 35.0% |
| TAAATAGAAGAAGGAAGCCT+TGG | + | chr5_3:55278691-55278710 | None:intergenic | 35.0% | |
| GAAATTGAGCTATAACTGGT+AGG | + | chr5_3:55278730-55278749 | None:intergenic | 35.0% | |
| AAGTGAAGGAGAGTCCAAAA+GGG | + | chr5_3:55277307-55277326 | None:intergenic | 40.0% | |
| ATGCTTGAATGTCCAGAGAA+AGG | - | chr5_3:55277375-55277394 | Msa0819160:three_prime_UTR | 40.0% | |
| TGAGATAGGAAAGAAGAGAG+AGG | - | chr5_3:55277583-55277602 | Msa0819160:CDS | 40.0% | |
| GAGATAGGAAAGAAGAGAGA+GGG | - | chr5_3:55277584-55277603 | Msa0819160:CDS | 40.0% | |
| GTGGTATTTAGTGTTCCTGA+AGG | + | chr5_3:55277644-55277663 | None:intergenic | 40.0% | |
| CAACGTCTCAAAGTTGCTAT+TGG | - | chr5_3:55277787-55277806 | Msa0819160:intron | 40.0% | |
| TCCTTAGACCCTATGTATGT+GGG | + | chr5_3:55278060-55278079 | None:intergenic | 40.0% | |
| ATGAGGTCCACAATTAGATC+AGG | - | chr5_3:55278266-55278285 | Msa0819160:intron | 40.0% | |
| AGGCTAAGAGATCCAGTTTA+TGG | - | chr5_3:55278502-55278521 | Msa0819160:CDS | 40.0% | |
| AGATCCAGTTTATGGATGCA+TGG | - | chr5_3:55278510-55278529 | Msa0819160:CDS | 40.0% | |
| GATCCAGTTTATGGATGCAT+GGG | - | chr5_3:55278511-55278530 | Msa0819160:CDS | 40.0% | |
| AAGTGAAGGAGAGTCCAAAA+GGG | + | chr5_3:55277307-55277326 | None:intergenic | 40.0% | |
| ATGCTTGAATGTCCAGAGAA+AGG | - | chr5_3:55277375-55277394 | Msa0819160:three_prime_UTR | 40.0% | |
| TGAGATAGGAAAGAAGAGAG+AGG | - | chr5_3:55277583-55277602 | Msa0819160:CDS | 40.0% | |
| GAGATAGGAAAGAAGAGAGA+GGG | - | chr5_3:55277584-55277603 | Msa0819160:CDS | 40.0% | |
| GTGGTATTTAGTGTTCCTGA+AGG | + | chr5_3:55277644-55277663 | None:intergenic | 40.0% | |
| CAACGTCTCAAAGTTGCTAT+TGG | - | chr5_3:55277787-55277806 | Msa0819160:intron | 40.0% | |
| TCCTTAGACCCTATGTATGT+GGG | + | chr5_3:55278060-55278079 | None:intergenic | 40.0% | |
| ATGAGGTCCACAATTAGATC+AGG | - | chr5_3:55278266-55278285 | Msa0819160:intron | 40.0% | |
| AGGCTAAGAGATCCAGTTTA+TGG | - | chr5_3:55278502-55278521 | Msa0819160:CDS | 40.0% | |
| AGATCCAGTTTATGGATGCA+TGG | - | chr5_3:55278510-55278529 | Msa0819160:CDS | 40.0% | |
| GATCCAGTTTATGGATGCAT+GGG | - | chr5_3:55278511-55278530 | Msa0819160:CDS | 40.0% | |
| GAAGTGAAGGAGAGTCCAAA+AGG | + | chr5_3:55277308-55277327 | None:intergenic | 45.0% | |
| GGAAGAATGTTAGGTCCTTC+AGG | - | chr5_3:55277626-55277645 | Msa0819160:CDS | 45.0% | |
| AAAAGCTTGCATGCAGCACA+AGG | + | chr5_3:55277671-55277690 | None:intergenic | 45.0% | |
| !!! | CATGCAAGCTTTTGAGACGA+AGG | - | chr5_3:55277678-55277697 | Msa0819160:CDS | 45.0% |
| GGCTCATGAGGAGAGAAATA+TGG | + | chr5_3:55277728-55277747 | None:intergenic | 45.0% | |
| TGGACAGAAGCAAACTTCTG+AGG | + | chr5_3:55277749-55277768 | None:intergenic | 45.0% | |
| GCTTCTGTCCACAAAGTCTT+TGG | - | chr5_3:55277758-55277777 | Msa0819160:CDS | 45.0% | |
| !! | TAGCAACTTTGAGACGTTGC+TGG | + | chr5_3:55277786-55277805 | None:intergenic | 45.0% |
| TCCCACATACATAGGGTCTA+AGG | - | chr5_3:55278056-55278075 | Msa0819160:intron | 45.0% | |
| CTCCTTAGACCCTATGTATG+TGG | + | chr5_3:55278061-55278080 | None:intergenic | 45.0% | |
| !! | GTGGACCTTTGAGGTTAACT+TGG | - | chr5_3:55278154-55278173 | Msa0819160:intron | 45.0% |
| GCATCTGCTCTTTGATTCTC+TGG | + | chr5_3:55278451-55278470 | None:intergenic | 45.0% | |
| !! | CTTGGTAGTGATGTTGAAGG+TGG | + | chr5_3:55278673-55278692 | None:intergenic | 45.0% |
| CACCTTCAACATCACTACCA+AGG | - | chr5_3:55278671-55278690 | Msa0819160:intron | 45.0% | |
| !! | AGCCTTGGTAGTGATGTTGA+AGG | + | chr5_3:55278676-55278695 | None:intergenic | 45.0% |
| GAAGTGAAGGAGAGTCCAAA+AGG | + | chr5_3:55277308-55277327 | None:intergenic | 45.0% | |
| GGAAGAATGTTAGGTCCTTC+AGG | - | chr5_3:55277626-55277645 | Msa0819160:CDS | 45.0% | |
| AAAAGCTTGCATGCAGCACA+AGG | + | chr5_3:55277671-55277690 | None:intergenic | 45.0% | |
| !!! | CATGCAAGCTTTTGAGACGA+AGG | - | chr5_3:55277678-55277697 | Msa0819160:CDS | 45.0% |
| GGCTCATGAGGAGAGAAATA+TGG | + | chr5_3:55277728-55277747 | None:intergenic | 45.0% | |
| TGGACAGAAGCAAACTTCTG+AGG | + | chr5_3:55277749-55277768 | None:intergenic | 45.0% | |
| GCTTCTGTCCACAAAGTCTT+TGG | - | chr5_3:55277758-55277777 | Msa0819160:CDS | 45.0% | |
| !! | TAGCAACTTTGAGACGTTGC+TGG | + | chr5_3:55277786-55277805 | None:intergenic | 45.0% |
| TCCCACATACATAGGGTCTA+AGG | - | chr5_3:55278056-55278075 | Msa0819160:intron | 45.0% | |
| CTCCTTAGACCCTATGTATG+TGG | + | chr5_3:55278061-55278080 | None:intergenic | 45.0% | |
| !! | GTGGACCTTTGAGGTTAACT+TGG | - | chr5_3:55278154-55278173 | Msa0819160:intron | 45.0% |
| GCATCTGCTCTTTGATTCTC+TGG | + | chr5_3:55278451-55278470 | None:intergenic | 45.0% | |
| !! | CTTGGTAGTGATGTTGAAGG+TGG | + | chr5_3:55278673-55278692 | None:intergenic | 45.0% |
| CACCTTCAACATCACTACCA+AGG | - | chr5_3:55278671-55278690 | Msa0819160:intron | 45.0% | |
| !! | AGCCTTGGTAGTGATGTTGA+AGG | + | chr5_3:55278676-55278695 | None:intergenic | 45.0% |
| !!! | TAATTAGAATATTTTTTAAA+AGG | + | chr5_3:55278134-55278153 | None:intergenic | 5.0% |
| !!! | TAATTAGAATATTTTTTAAA+AGG | + | chr5_3:55278134-55278153 | None:intergenic | 5.0% |
| ! | TTTGAGACGAAGGTGTGCTC+AGG | - | chr5_3:55277688-55277707 | Msa0819160:CDS | 50.0% |
| !! | GCAAACTTCTGAGGCTCATG+AGG | + | chr5_3:55277740-55277759 | None:intergenic | 50.0% |
| TGCTGGCACCAAAGACTTTG+TGG | + | chr5_3:55277769-55277788 | None:intergenic | 50.0% | |
| GCACCCATGCATCCATAAAC+TGG | + | chr5_3:55278517-55278536 | None:intergenic | 50.0% | |
| ! | TTTGAGACGAAGGTGTGCTC+AGG | - | chr5_3:55277688-55277707 | Msa0819160:CDS | 50.0% |
| !! | GCAAACTTCTGAGGCTCATG+AGG | + | chr5_3:55277740-55277759 | None:intergenic | 50.0% |
| TGCTGGCACCAAAGACTTTG+TGG | + | chr5_3:55277769-55277788 | None:intergenic | 50.0% | |
| GCACCCATGCATCCATAAAC+TGG | + | chr5_3:55278517-55278536 | None:intergenic | 50.0% | |
| GCATGCAGCACAAGGAGTAG+TGG | + | chr5_3:55277663-55277682 | None:intergenic | 55.0% | |
| GCATGCAGCACAAGGAGTAG+TGG | + | chr5_3:55277663-55277682 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55277264 | 55278956 | 55277264 | ID=Msa0819160;Name=Msa0819160 |
| chr5_3 | mRNA | 55277264 | 55278956 | 55277264 | ID=Msa0819160-mRNA-1;Parent=Msa0819160;Name=Msa0819160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|3|179|196 |
| chr5_3 | exon | 55277264 | 55277778 | 55277264 | ID=Msa0819160-mRNA-1:exon:16791;Parent=Msa0819160-mRNA-1 |
| chr5_3 | exon | 55278412 | 55278652 | 55278412 | ID=Msa0819160-mRNA-1:exon:16790;Parent=Msa0819160-mRNA-1 |
| chr5_3 | exon | 55278824 | 55278956 | 55278824 | ID=Msa0819160-mRNA-1:exon:16789;Parent=Msa0819160-mRNA-1 |
| chr5_3 | five_prime_UTR | 55278838 | 55278956 | 55278838 | ID=Msa0819160-mRNA-1:five_prime_utr;Parent=Msa0819160-mRNA-1 |
| chr5_3 | CDS | 55278824 | 55278837 | 55278824 | ID=Msa0819160-mRNA-1:cds;Parent=Msa0819160-mRNA-1 |
| chr5_3 | CDS | 55278412 | 55278652 | 55278412 | ID=Msa0819160-mRNA-1:cds;Parent=Msa0819160-mRNA-1 |
| chr5_3 | CDS | 55277443 | 55277778 | 55277443 | ID=Msa0819160-mRNA-1:cds;Parent=Msa0819160-mRNA-1 |
| chr5_3 | three_prime_UTR | 55277264 | 55277442 | 55277264 | ID=Msa0819160-mRNA-1:three_prime_utr;Parent=Msa0819160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
