AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820240 MtrunA17_Chr5g0439971 100.000 372 0 0 1 372 1 372 0.0 782
Msa0820240 MtrunA17_Chr3g0119031 91.444 374 23 3 1 372 1 367 0.0 711
Msa0820240 MtrunA17_Chr1g0170261 78.400 375 72 5 1 372 1 369 0.0 607
Msa0820240 MtrunA17_Chr5g0443161 71.724 145 38 2 41 184 15 157 1.11e-69 219
Msa0820240 MtrunA17_Chr5g0443194 58.594 128 53 0 57 184 15 142 6.96e-46 163
Msa0820240 MtrunA17_Chr5g0442971 41.232 211 68 3 30 184 13 223 2.52e-41 154
Msa0820240 MtrunA17_Chr1g0166871 45.312 128 68 1 61 186 13 140 2.10e-38 139
Msa0820240 MtrunA17_Chr7g0268251 42.636 129 71 2 61 186 13 141 3.60e-30 119
Msa0820240 MtrunA17_Chr5g0443181 59.770 87 35 0 100 186 1 87 3.28e-27 110
Msa0820240 MtrunA17_Chr1g0176331 42.063 126 71 2 61 186 10 133 3.92e-26 107
Msa0820240 MtrunA17_Chr1g0168221 41.781 146 75 5 49 188 49 190 5.26e-26 110
Msa0820240 MtrunA17_Chr1g0186421 35.359 181 93 5 11 188 17 176 2.39e-24 102
Msa0820240 MtrunA17_Chr1g0186411 41.353 133 68 5 60 188 61 187 1.16e-23 103
Msa0820240 MtrunA17_Chr7g0268211 39.200 125 66 4 62 184 107 223 3.75e-21 92.0
Msa0820240 MtrunA17_Chr3g0137501 35.507 138 78 3 60 186 405 542 6.04e-21 95.1
Msa0820240 MtrunA17_Chr3g0137501 34.848 132 73 4 64 186 71 198 2.39e-20 93.2
Msa0820240 MtrunA17_Chr8g0338771 34.459 148 83 4 51 185 4 150 2.60e-20 91.3
Msa0820240 MtrunA17_Chr8g0334821 32.624 141 85 3 56 186 30 170 1.81e-19 89.7
Msa0820240 MtrunA17_Chr8g0334821 31.111 135 86 3 62 190 205 338 4.01e-15 76.6
Msa0820240 MtrunA17_Chr4g0069161 33.793 145 86 4 54 188 12 156 3.63e-19 87.0
Msa0820240 MtrunA17_Chr4g0069161 31.915 141 92 2 54 191 169 308 1.04e-16 80.1
Msa0820240 MtrunA17_Chr3g0138791 31.977 172 109 4 204 370 107 275 2.09e-14 75.1
Msa0820240 MtrunA17_Chr1g0148321 31.395 172 110 4 204 370 107 275 4.13e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820240 AT5G06600.1 82.667 375 54 6 1 372 1 367 0.0 642
Msa0820240 AT5G06600.3 82.667 375 54 6 1 372 1 367 0.0 641
Msa0820240 AT5G06600.2 82.400 375 54 6 1 372 1 366 0.0 639
Msa0820240 AT3G11910.3 80.749 374 62 4 1 372 1 366 0.0 633
Msa0820240 AT3G11910.1 80.749 374 62 4 1 372 1 366 0.0 633
Msa0820240 AT3G11910.4 80.481 374 62 4 1 372 1 365 0.0 631
Msa0820240 AT3G11910.2 80.481 374 62 4 1 372 1 365 0.0 631
Msa0820240 AT3G58250.1 48.485 132 66 1 61 190 10 141 7.82e-37 135
Msa0820240 AT3G58270.3 46.565 131 70 0 60 190 7 137 1.04e-33 128
Msa0820240 AT3G58270.2 46.565 131 70 0 60 190 7 137 1.04e-33 128
Msa0820240 AT3G58270.1 46.565 131 70 0 60 190 7 137 1.04e-33 128
Msa0820240 AT3G58360.1 45.385 130 71 0 61 190 8 137 9.15e-32 122
Msa0820240 AT3G58340.2 40.000 145 85 1 61 205 8 150 1.34e-31 122
Msa0820240 AT3G58370.1 46.875 128 65 2 60 184 8 135 2.51e-31 120
Msa0820240 AT3G58340.1 43.548 124 70 0 61 184 8 131 2.72e-31 121
Msa0820240 AT3G58410.2 45.968 124 64 1 61 184 8 128 3.56e-31 120
Msa0820240 AT3G58210.1 42.105 133 75 1 60 190 7 139 5.25e-30 117
Msa0820240 AT3G58410.1 41.985 131 59 1 61 191 29 142 5.09e-27 109
Msa0820240 AT3G58350.2 39.098 133 78 2 61 190 8 140 2.42e-26 107
Msa0820240 AT3G58350.1 39.098 133 78 2 61 190 8 140 2.42e-26 107
Msa0820240 AT2G05410.2 41.353 133 75 2 60 190 7 138 3.30e-26 107
Msa0820240 AT3G27040.1 38.931 131 79 1 61 190 9 139 9.24e-26 105
Msa0820240 AT2G05420.1 38.686 137 75 2 62 190 10 145 1.63e-25 105
Msa0820240 AT3G58200.1 38.017 121 74 1 54 173 1 121 1.23e-24 103
Msa0820240 AT3G58260.1 27.698 278 143 9 62 303 9 264 1.94e-24 102
Msa0820240 AT1G31390.1 40.000 130 75 1 54 180 1 130 1.57e-23 99.0
Msa0820240 AT3G58290.1 35.915 142 79 3 54 184 4 144 4.70e-23 97.8
Msa0820240 AT2G01790.1 38.462 130 77 1 64 190 11 140 1.57e-22 96.3
Msa0820240 AT5G43560.2 41.667 132 70 5 63 191 72 199 1.70e-21 97.1
Msa0820240 AT5G43560.1 41.667 132 70 5 63 191 72 199 1.70e-21 97.1
Msa0820240 AT1G04300.1 40.299 134 73 5 61 191 69 198 4.57e-21 95.5
Msa0820240 AT3G44790.1 38.168 131 76 2 61 190 5 131 2.57e-20 90.9
Msa0820240 AT1G31400.1 37.143 140 82 3 54 190 1 137 2.69e-20 90.1
Msa0820240 AT2G25320.3 35.766 137 76 4 61 186 405 540 3.16e-20 93.2
Msa0820240 AT2G25320.3 33.333 132 75 4 64 186 76 203 4.75e-19 89.7
Msa0820240 AT2G25320.1 35.766 137 76 4 61 186 404 539 3.21e-20 93.2
Msa0820240 AT2G25320.1 33.333 132 75 4 64 186 75 202 4.71e-19 89.7
Msa0820240 AT2G25320.2 35.252 139 78 4 61 188 405 542 6.03e-20 92.4
Msa0820240 AT2G25320.2 33.333 132 75 4 64 186 76 203 5.38e-19 89.4
Msa0820240 AT3G17380.1 33.103 145 90 2 51 188 11 155 9.44e-20 89.0
Msa0820240 AT3G17380.1 25.899 139 99 2 54 189 168 305 1.45e-14 73.9
Msa0820240 AT3G44800.1 35.878 131 83 1 61 190 5 135 1.03e-19 89.4
Msa0820240 AT5G52330.4 38.281 128 73 4 63 188 22 145 2.19e-19 89.4
Msa0820240 AT5G52330.3 38.281 128 73 4 63 188 22 145 2.19e-19 89.4
Msa0820240 AT5G52330.1 38.281 128 73 4 63 188 22 145 2.19e-19 89.4
Msa0820240 AT1G04300.3 38.028 142 73 6 61 191 69 206 4.43e-19 89.7
Msa0820240 AT3G58400.1 40.000 110 64 2 82 190 24 132 6.70e-19 86.3
Msa0820240 AT3G58220.3 34.074 135 76 5 62 189 13 141 1.29e-18 85.1
Msa0820240 AT3G58220.1 33.333 132 81 4 62 189 13 141 1.51e-18 86.3
Msa0820240 AT3G58220.2 34.074 135 76 5 62 189 13 141 2.64e-18 86.3
Msa0820240 AT3G58220.5 34.074 135 76 5 62 189 13 141 2.68e-18 85.1
Msa0820240 AT3G58220.4 34.074 135 76 5 62 189 13 141 2.83e-18 85.5
Msa0820240 AT2G25330.1 30.128 156 94 5 43 186 25 177 3.12e-18 86.7
Msa0820240 AT2G25330.1 33.094 139 82 3 61 188 359 497 2.59e-15 77.8
Msa0820240 AT2G32880.1 30.303 198 121 7 9 192 123 317 1.12e-17 83.2
Msa0820240 AT4G09780.2 34.228 149 94 4 41 186 194 341 1.16e-17 84.3
Msa0820240 AT2G32870.1 29.858 211 119 8 9 192 207 415 3.28e-17 82.8
Msa0820240 AT3G58440.1 40.157 127 72 4 61 186 10 133 3.37e-17 83.6
Msa0820240 AT3G58240.1 33.333 132 86 2 56 186 3 133 5.18e-17 81.3
Msa0820240 AT1G04300.4 39.837 123 67 5 72 191 61 179 8.46e-17 82.8
Msa0820240 AT4G09780.1 31.447 159 96 4 41 186 194 352 1.89e-16 80.9
Msa0820240 AT2G42460.1 38.462 130 76 3 62 190 10 136 5.20e-16 78.2
Msa0820240 AT4G09770.2 32.298 161 98 5 41 198 140 292 8.19e-16 77.8
Msa0820240 AT4G09770.1 32.298 161 98 5 41 198 140 292 8.19e-16 77.8
Msa0820240 AT4G09770.4 32.298 161 98 5 41 198 166 318 9.78e-16 77.8
Msa0820240 AT4G01390.1 33.548 155 94 5 43 192 149 299 1.08e-14 74.3
Msa0820240 AT2G42480.1 36.220 127 68 6 62 181 8 128 4.22e-14 73.2
Msa0820240 AT3G58290.3 38.384 99 49 3 54 141 4 101 6.05e-14 71.6
Msa0820240 AT5G26260.1 29.861 144 94 3 50 186 51 194 7.05e-14 72.4
Msa0820240 AT5G26320.1 29.577 142 91 3 54 186 54 195 7.93e-14 72.4
Msa0820240 AT2G05410.1 38.614 101 59 2 92 190 1 100 1.15e-13 70.9
Msa0820240 AT3G49600.3 32.203 177 109 5 200 370 102 273 3.78e-13 71.6
Msa0820240 AT3G49600.2 32.203 177 109 5 200 370 102 273 3.98e-13 71.2
Msa0820240 AT3G49600.1 32.203 177 109 5 200 370 102 273 3.98e-13 71.2
Msa0820240 AT3G29580.1 32.558 129 82 3 60 185 7 133 4.02e-13 69.7
Msa0820240 AT4G00780.1 34.228 149 89 5 43 186 148 292 4.91e-13 69.3
Msa0820240 AT3G58280.1 31.818 110 72 2 82 191 29 135 5.59e-13 69.3
Msa0820240 AT2G42475.1 36.434 129 75 5 54 180 1 124 6.38e-13 69.7
Msa0820240 AT3G46190.2 31.034 145 96 2 42 186 163 303 9.00e-13 68.9
Msa0820240 AT5G26280.3 28.378 148 99 3 46 186 65 212 9.01e-13 69.3
Msa0820240 AT3G20370.1 30.058 173 103 8 12 173 41 206 9.10e-13 69.3
Msa0820240 AT3G58380.1 28.244 131 93 1 61 190 8 138 9.73e-13 68.6
Msa0820240 AT5G26280.1 31.858 113 72 2 79 186 81 193 1.01e-12 68.9
Msa0820240 AT3G20370.2 31.159 138 80 6 47 173 51 184 1.02e-12 68.9
Msa0820240 AT3G46190.1 31.034 145 96 2 42 186 143 283 1.08e-12 68.6
Msa0820240 AT1G58270.1 30.612 147 90 4 54 197 249 386 2.49e-12 68.2
Msa0820240 AT3G22080.1 28.571 140 88 4 47 174 7 146 5.11e-12 66.6
Msa0820240 AT1G04300.5 40.385 104 55 5 91 191 69 168 8.40e-12 67.4
Msa0820240 AT3G28220.1 32.000 125 77 4 62 183 239 358 1.33e-11 65.9
Msa0820240 AT2G04170.4 28.986 138 91 3 55 185 3 140 2.32e-11 64.3
Msa0820240 AT2G04170.3 28.986 138 91 3 55 185 3 140 2.32e-11 64.3
Msa0820240 AT2G04170.5 28.986 138 91 3 55 185 125 262 3.38e-11 64.7
Msa0820240 AT2G04170.6 28.986 138 91 3 55 185 85 222 4.39e-11 64.3
Msa0820240 AT2G04170.2 28.986 138 91 3 55 185 125 262 5.20e-11 64.3
Msa0820240 AT2G04170.1 28.986 138 91 3 55 185 125 262 5.20e-11 64.3
Msa0820240 AT3G20360.1 31.618 136 82 6 57 184 220 352 5.43e-11 63.9
Msa0820240 AT5G26290.1 30.496 141 91 3 55 188 48 188 5.62e-11 63.5
Msa0820240 AT2G04170.7 29.197 137 90 3 56 185 126 262 6.81e-11 63.2

Find 92 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCACAGTGTACTTATTA+TGG 0.159654 5_3:+57450429 None:intergenic
TCCACAGTGTTGGCGGTTTC+AGG 0.181720 5_3:+57450897 None:intergenic
CGCGGTTCCGCATGCGGATT+TGG 0.211357 5_3:-57452639 Msa0820240:CDS
GGACTATTTGTCCATGTATT+TGG 0.214565 5_3:-57450528 Msa0820240:CDS
TCCGTAGGATTGTTGATTAC+TGG 0.243989 5_3:-57449549 Msa0820240:CDS
TAGTCCACATTGTTCCCTTT+TGG 0.278526 5_3:+57450545 None:intergenic
AGCCTGACCTTTCGGAAATA+AGG 0.283888 5_3:+57449430 None:intergenic
AAAGAGCTGACAAAATCTTT+TGG 0.307298 5_3:-57449209 Msa0820240:CDS
TATTCAGATGTATTTGTTGT+TGG 0.357395 5_3:-57450798 Msa0820240:CDS
ATTCAGATGTATTTGTTGTT+GGG 0.358987 5_3:-57450797 Msa0820240:CDS
TTCACATCCTTCATGCCTCT+TGG 0.370593 5_3:-57449640 Msa0820240:CDS
CATGATGGTCATGACGGTTA+TGG 0.387611 5_3:+57453081 None:intergenic
TCAATGCACGGGAAAGTGAC+TGG 0.413176 5_3:-57449666 Msa0820240:CDS
CAACACTGGTGTCACTATAC+TGG 0.417565 5_3:+57449237 None:intergenic
AGAACAAACTTTGCAGAGCC+AGG 0.428594 5_3:+57449267 None:intergenic
CCTCGCGGTGCGGTGGTTGA+AGG 0.430672 5_3:+57453111 None:intergenic
TCTCGAGCAACACCTTCTTC+TGG 0.433312 5_3:-57453188 None:intergenic
ATTCTCCATGTGAATCTTGA+TGG 0.434730 5_3:+57450855 None:intergenic
GATGGTGAAGGATCCTCAAC+AGG 0.449558 5_3:+57450873 None:intergenic
AAGAGTGAGGTTACGTCAAT+CGG 0.480934 5_3:+57453049 None:intergenic
TTGTTGTTGGGAGTTACAAA+TGG 0.484541 5_3:-57450785 Msa0820240:intron
GTTGAAGTTGAACGTCTTGA+GGG 0.492297 5_3:-57448695 Msa0820240:CDS
GGCATATCATTCTCTGTTGT+AGG 0.494452 5_3:+57449305 None:intergenic
AATAAGTACACTGTGAGAAA+AGG 0.495525 5_3:-57450425 Msa0820240:intron
AACAGGCTCCACAGTGTTGG+CGG 0.498367 5_3:+57450890 None:intergenic
ACTATTCAGAAATTGTTTGA+AGG 0.499666 5_3:-57448998 Msa0820240:CDS
TCAAAGGAAGCATAAACATC+AGG 0.504903 5_3:+57448725 None:intergenic
AAAAGGAGACTGGATATGTT+GGG 0.510809 5_3:-57449513 Msa0820240:CDS
TGTTGAAGTTGAACGTCTTG+AGG 0.511531 5_3:-57448696 Msa0820240:CDS
GCCGCACGCGGTTCCGCATG+CGG 0.515972 5_3:-57452645 Msa0820240:CDS
CAATGCACGGGAAAGTGACT+GGG 0.517515 5_3:-57449665 Msa0820240:CDS
TGCACTCGATGTAGTTCATA+TGG 0.522812 5_3:+57448972 None:intergenic
GAGGTTACGTCAATCGGAGC+AGG 0.523979 5_3:+57453055 None:intergenic
GTTCAGGCAACTGTCGTTGA+GGG 0.524541 5_3:-57449022 Msa0820240:intron
ATATGTTGGGCTTAAGAACC+AGG 0.528339 5_3:-57449500 Msa0820240:CDS
CTATTCAGAAATTGTTTGAA+GGG 0.531110 5_3:-57448997 Msa0820240:CDS
TAGATATGCACAGTTTAGCT+TGG 0.531238 5_3:-57450468 Msa0820240:CDS
TCCGCATGCGGAACCGCGTG+CGG 0.534554 5_3:+57452644 None:intergenic
CAATTCACCAAGAGGCATGA+AGG 0.535350 5_3:+57449633 None:intergenic
AACAAACTTTGCAGAGCCAG+GGG 0.537595 5_3:+57449269 None:intergenic
GATCTTCAACTTGATGTCAA+AGG 0.541747 5_3:-57448752 Msa0820240:CDS
ATCTGCAACATCCAAATACA+TGG 0.541837 5_3:+57450517 None:intergenic
TTCATAAGATACCCTCTACT+AGG 0.549694 5_3:+57449604 None:intergenic
TTGAAGTTGAACGTCTTGAG+GGG 0.553237 5_3:-57448694 Msa0820240:CDS
ACAGAGAATGATATGCCCTC+TGG 0.560183 5_3:-57449299 Msa0820240:CDS
AACGAGATCACACCAGAAGA+AGG 0.560923 5_3:+57453176 None:intergenic
GAACAAACTTTGCAGAGCCA+GGG 0.564249 5_3:+57449268 None:intergenic
CGCAGCATCAGTTCAATGCA+CGG 0.568279 5_3:-57449678 Msa0820240:CDS
TCATATTCCTTATTTCCGAA+AGG 0.568714 5_3:-57449437 Msa0820240:intron
CAACTAGTCTGCCCTACGGT+TGG 0.569646 5_3:-57450493 Msa0820240:CDS
AACTTCAACATATTTGTCAA+AGG 0.572460 5_3:+57448709 None:intergenic
CTCAACAGGCTCCACAGTGT+TGG 0.575994 5_3:+57450887 None:intergenic
AAAACTTGAAGACAAAATGA+AGG 0.577785 5_3:-57449123 Msa0820240:intron
TACTCTTATAATTGAAGCCG+AGG 0.580435 5_3:-57449578 Msa0820240:CDS
TGTTCAGGCAACTGTCGTTG+AGG 0.582261 5_3:-57449023 Msa0820240:intron
CAACACTGTGGAGCCTGTTG+AGG 0.583424 5_3:-57450886 Msa0820240:CDS
TCATATAGCATGTAGCTCCC+TGG 0.584269 5_3:+57449482 None:intergenic
CGATAGATAATACCATCCAT+TGG 0.585242 5_3:+57452596 None:intergenic
AATAATCATCAACCAATGGA+TGG 0.590226 5_3:-57452608 Msa0820240:intron
TCCAGTAATCAACAATCCTA+CGG 0.593567 5_3:+57449548 None:intergenic
AAGCCGAGGTCCTTGTCCGT+AGG 0.594681 5_3:-57449564 Msa0820240:CDS
GCAGCATCAGTTCAATGCAC+GGG 0.596900 5_3:-57449677 Msa0820240:CDS
CTTCACCATCAAGATTCACA+TGG 0.602048 5_3:-57450860 Msa0820240:CDS
TGCATATCTACTCCAACCGT+AGG 0.603099 5_3:+57450481 None:intergenic
GAACAATAATCATCAACCAA+TGG 0.603852 5_3:-57452612 Msa0820240:CDS
AATCGGAGCAGGAGTCATGA+TGG 0.604741 5_3:+57453066 None:intergenic
CATTCTCTGTTGTAGGCATG+TGG 0.612114 5_3:+57449312 None:intergenic
GAATTGTATGATCCTAGTAG+AGG 0.616256 5_3:-57449616 Msa0820240:CDS
GGACTATAAATCAACACGAA+AGG 0.618503 5_3:-57448942 Msa0820240:CDS
TGGAAATTGACCTCGCGGTG+CGG 0.620810 5_3:+57453101 None:intergenic
AAATTGACCTCGCGGTGCGG+TGG 0.626041 5_3:+57453104 None:intergenic
TTCTCAGCCAAATCCGCATG+CGG 0.626749 5_3:+57452632 None:intergenic
GCATATCTACTCCAACCGTA+GGG 0.628168 5_3:+57450482 None:intergenic
AATTGTATGATCCTAGTAGA+GGG 0.631770 5_3:-57449615 Msa0820240:CDS
TTTGTAGCAACAACAGCAGG+AGG 0.633116 5_3:-57452684 Msa0820240:intron
AATCCTACGGACAAGGACCT+CGG 0.639665 5_3:+57449561 None:intergenic
AGAGATGCTTGTGCCGCACG+CGG 0.646573 5_3:-57452657 Msa0820240:CDS
AGGAGTCATGATGGTCATGA+CGG 0.647509 5_3:+57453075 None:intergenic
AATCAACAATCCTACGGACA+AGG 0.650687 5_3:+57449554 None:intergenic
CGGTGGTTGAAGGAAAACAA+TGG 0.651273 5_3:+57453121 None:intergenic
CCTTCAACCACCGCACCGCG+AGG 0.663752 5_3:-57453111 Msa0820240:five_prime_UTR
TGAAGTTGAACGTCTTGAGG+GGG 0.668130 5_3:-57448693 Msa0820240:CDS
GGATCATACAATTCACCAAG+AGG 0.677963 5_3:+57449625 None:intergenic
ACCTGAAACCGCCAACACTG+TGG 0.685308 5_3:-57450898 Msa0820240:CDS
GATTCAACTAGTCTGCCCTA+CGG 0.687256 5_3:-57450497 Msa0820240:CDS
CTACATCGAGTGCATCAATG+TGG 0.692185 5_3:-57448963 Msa0820240:CDS
CATGTGAATCTTGATGGTGA+AGG 0.695438 5_3:+57450861 None:intergenic
TATGTTGGGCTTAAGAACCA+GGG 0.701641 5_3:-57449499 Msa0820240:CDS
AATGCACGGGAAAGTGACTG+GGG 0.703427 5_3:-57449664 Msa0820240:CDS
TGGTTGAAGGAAAACAATGG+AGG 0.710277 5_3:+57453124 None:intergenic
GGTTATGGAAATTGACCTCG+CGG 0.726394 5_3:+57453096 None:intergenic
ACAAACTTTGCAGAGCCAGG+GGG 0.728959 5_3:+57449270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATACAAAAATTGAAAA+AGG + chr5_3:57448924-57448943 None:intergenic 10.0%
!! AAAAAAATTGCAACTTATAA+GGG + chr5_3:57451891-57451910 None:intergenic 15.0%
!! AAAAAAAATTGCAACTTATA+AGG + chr5_3:57451892-57451911 None:intergenic 15.0%
!! CAAAAAAAAAAAATAAAGAG+TGG + chr5_3:57453030-57453049 None:intergenic 15.0%
!!! TTTCTTTTCTTTTTTCTTTC+TGG - chr5_3:57449151-57449170 Msa0820240:CDS 20.0%
!!! ATTGTTTTTGAGATGATTTA+AGG - chr5_3:57449337-57449356 Msa0820240:intron 20.0%
!! TTGTCATTAAAAAAGAAACT+GGG + chr5_3:57449687-57449706 None:intergenic 20.0%
!! TTTGTCATTAAAAAAGAAAC+TGG + chr5_3:57449688-57449707 None:intergenic 20.0%
!! TAATTTGAGAAAATGGTATA+AGG - chr5_3:57450102-57450121 Msa0820240:intron 20.0%
!! TCATGTCAAATAGATTAAAA+TGG + chr5_3:57450130-57450149 None:intergenic 20.0%
!! TTTATTTGATGTTAGAGTTA+AGG - chr5_3:57450242-57450261 Msa0820240:intron 20.0%
!! TGCATAAAACCAATAAATAA+AGG + chr5_3:57450743-57450762 None:intergenic 20.0%
!!! TTTATTGGTTTTATGCATTT+TGG - chr5_3:57450746-57450765 Msa0820240:intron 20.0%
!! TTTATATTGATGAACATTAG+TGG - chr5_3:57450931-57450950 Msa0820240:intron 20.0%
!! ATGAACATTGTGAATTTATT+TGG + chr5_3:57451119-57451138 None:intergenic 20.0%
!! AAATAATGGCTAATCATAAA+TGG + chr5_3:57451704-57451723 None:intergenic 20.0%
!! TTGAACAAAATTGCTAATTA+AGG - chr5_3:57451942-57451961 Msa0820240:intron 20.0%
!! AATTAATTTCAGAATGCATA+TGG + chr5_3:57452961-57452980 None:intergenic 20.0%
!! TAGTCTTTATAACTTATGTT+TGG - chr5_3:57453082-57453101 Msa0820240:exon 20.0%
! GAGAACATTAAAAGCAAAAT+TGG + chr5_3:57448868-57448887 None:intergenic 25.0%
!!! TTGCATTTCGTTTTTGATTT+TGG - chr5_3:57449056-57449075 Msa0820240:intron 25.0%
!!! TGCATTTCGTTTTTGATTTT+GGG - chr5_3:57449057-57449076 Msa0820240:intron 25.0%
!!! TGGTGATTTTGTTTATGTTT+TGG - chr5_3:57449125-57449144 Msa0820240:CDS 25.0%
! TTTGAAAGTAGTAAACAAAG+TGG - chr5_3:57449790-57449809 Msa0820240:intron 25.0%
! TTGAAAGTAGTAAACAAAGT+GGG - chr5_3:57449791-57449810 Msa0820240:intron 25.0%
!!! ACATTACCATTTGATTTGAA+GGG + chr5_3:57449856-57449875 None:intergenic 25.0%
!!! TACATTACCATTTGATTTGA+AGG + chr5_3:57449857-57449876 None:intergenic 25.0%
! AGAGAACTAAGTATATAAAC+TGG - chr5_3:57449970-57449989 Msa0820240:intron 25.0%
! TTTCTCTTGAAAAGGAAAAA+AGG + chr5_3:57450342-57450361 None:intergenic 25.0%
!!! AGTTACTTTTTCTCTTGAAA+AGG + chr5_3:57450350-57450369 None:intergenic 25.0%
! ATAACTGAACTAACTAGAAA+AGG + chr5_3:57450844-57450863 None:intergenic 25.0%
! TAAATTAGCTCAAAACTAGA+AGG + chr5_3:57450885-57450904 None:intergenic 25.0%
!!! TCTAGTTTTGAGCTAATTTA+AGG - chr5_3:57450885-57450904 Msa0820240:CDS 25.0%
!!! TATTCAGATGTATTTGTTGT+TGG - chr5_3:57451061-57451080 Msa0820240:intron 25.0%
!!! ATTCAGATGTATTTGTTGTT+GGG - chr5_3:57451062-57451081 Msa0820240:intron 25.0%
!!! GTGTACTTATTTTTCCAAAA+GGG - chr5_3:57451300-57451319 Msa0820240:intron 25.0%
!! GTCTTTTTATACATCATGTA+TGG + chr5_3:57451504-57451523 None:intergenic 25.0%
! GATGTATAAAAAGACATTTC+TGG - chr5_3:57451509-57451528 Msa0820240:intron 25.0%
! AATCATAAATGGCATATGAA+AGG + chr5_3:57451693-57451712 None:intergenic 25.0%
!!! AGTTGCAATTTTTTTTCCTA+AGG - chr5_3:57451896-57451915 Msa0820240:intron 25.0%
! AAAACTTGAAGACAAAATGA+AGG - chr5_3:57452736-57452755 Msa0820240:intron 25.0%
! AGTTCATTATGCATTTAAGA+CGG + chr5_3:57452812-57452831 None:intergenic 25.0%
! ACTATTCAGAAATTGTTTGA+AGG - chr5_3:57452861-57452880 Msa0820240:intron 25.0%
! CTATTCAGAAATTGTTTGAA+GGG - chr5_3:57452862-57452881 Msa0820240:intron 25.0%
! AAAAAAAATAAAGAGTGGCA+TGG + chr5_3:57453025-57453044 None:intergenic 25.0%
! AAGACTAAATTAGAATCAAG+TGG + chr5_3:57453069-57453088 None:intergenic 25.0%
! AACTTCAACATATTTGTCAA+AGG + chr5_3:57453153-57453172 None:intergenic 25.0%
!!! GCATTTCGTTTTTGATTTTG+GGG - chr5_3:57449058-57449077 Msa0820240:intron 30.0%
!! TTGATTTTGGGGATTTTGTT+AGG - chr5_3:57449069-57449088 Msa0820240:intron 30.0%
!! TGATTTTGGGGATTTTGTTA+GGG - chr5_3:57449070-57449089 Msa0820240:intron 30.0%
GAACAATAATCATCAACCAA+TGG - chr5_3:57449247-57449266 Msa0820240:CDS 30.0%
AATAATCATCAACCAATGGA+TGG - chr5_3:57449251-57449270 Msa0820240:CDS 30.0%
GAGTTAAGTGAGATGATTTA+AGG - chr5_3:57449374-57449393 Msa0820240:intron 30.0%
TAAGTGATATAAGCTAGTGT+TGG - chr5_3:57449454-57449473 Msa0820240:CDS 30.0%
!!! TGTTACTTTTTCTCTCGAAA+AGG + chr5_3:57449503-57449522 None:intergenic 30.0%
AATGTAACTAGTACATGTGT+TGG - chr5_3:57449587-57449606 Msa0820240:CDS 30.0%
AAACAGAGTGAATACTAAGT+AGG + chr5_3:57449720-57449739 None:intergenic 30.0%
TTTCATTTCTCAATGATTCG+TGG - chr5_3:57449738-57449757 Msa0820240:intron 30.0%
GAAGGGGAAAAAAAAAATTC+TGG + chr5_3:57449839-57449858 None:intergenic 30.0%
! TTTTTCCCCTTCAAATCAAA+TGG - chr5_3:57449847-57449866 Msa0820240:intron 30.0%
!! CATTACCATTTGATTTGAAG+GGG + chr5_3:57449855-57449874 None:intergenic 30.0%
CTAAGTATATAAACTGGTGT+TGG - chr5_3:57449976-57449995 Msa0820240:intron 30.0%
!!! CGTTACTTTTTCTCTTGAAA+GGG + chr5_3:57450025-57450044 None:intergenic 30.0%
TGGAAATAGTGTAAGGAAAT+AGG - chr5_3:57450160-57450179 Msa0820240:intron 30.0%
TAGGTGCTAATTTGAGAAAA+TGG - chr5_3:57450179-57450198 Msa0820240:intron 30.0%
! ATGCATTGATGTTAGACTTA+AGG - chr5_3:57450275-57450294 Msa0820240:intron 30.0%
TAAGTGATTTAAGCTAGTGT+TGG - chr5_3:57450301-57450320 Msa0820240:intron 30.0%
TTTAATTGAATGCAACCACA+TGG - chr5_3:57450456-57450475 Msa0820240:CDS 30.0%
TTAATTGAATGCAACCACAT+GGG - chr5_3:57450457-57450476 Msa0820240:CDS 30.0%
TTGCAACTAAAAAAGAAACC+AGG + chr5_3:57450561-57450580 None:intergenic 30.0%
TTTGAAAGCAGTAAACAAAG+TGG - chr5_3:57450651-57450670 Msa0820240:intron 30.0%
! GTAAACAAAGTGGCATTTTA+TGG - chr5_3:57450661-57450680 Msa0820240:intron 30.0%
CATAAGACGAGTAAAACAAT+TGG + chr5_3:57450815-57450834 None:intergenic 30.0%
! GAGAATTGACAACTTTTCTA+GGG - chr5_3:57451021-57451040 Msa0820240:intron 30.0%
TGGAAAAATAAAATCAGGAG+AGG + chr5_3:57451268-57451287 None:intergenic 30.0%
CAGAGTGGAAAAATAAAATC+AGG + chr5_3:57451273-57451292 None:intergenic 30.0%
!! TTTATTTTTCCACTCTGAAC+AGG - chr5_3:57451276-57451295 Msa0820240:intron 30.0%
!! CGTGTACTTATTTTTCCAAA+AGG - chr5_3:57451299-57451318 Msa0820240:intron 30.0%
TTCTCACAGTGTACTTATTA+TGG + chr5_3:57451433-57451452 None:intergenic 30.0%
AATAAGTACACTGTGAGAAA+AGG - chr5_3:57451434-57451453 Msa0820240:intron 30.0%
ATAAAGTCCTCTTCTACTAA+TGG + chr5_3:57451563-57451582 None:intergenic 30.0%
TTATCAACAAGCAACAACAA+AGG + chr5_3:57451738-57451757 None:intergenic 30.0%
!!! AATTTTGAAACAGATGCAGA+TGG + chr5_3:57451800-57451819 None:intergenic 30.0%
!!! GCAATTTTTTTTCCTAAGGT+TGG - chr5_3:57451900-57451919 Msa0820240:intron 30.0%
TGAATGCAAGTATAATGCAT+TGG - chr5_3:57451984-57452003 Msa0820240:intron 30.0%
GAATGCAAGTATAATGCATT+GGG - chr5_3:57451985-57452004 Msa0820240:intron 30.0%
TGTCTAATGGTAAATGCTAA+GGG + chr5_3:57452067-57452086 None:intergenic 30.0%
TTGTCTAATGGTAAATGCTA+AGG + chr5_3:57452068-57452087 None:intergenic 30.0%
GCATTTACCATTAGACAAAA+TGG - chr5_3:57452070-57452089 Msa0820240:intron 30.0%
!! TGAAAGTGCACATAGTTTTT+GGG - chr5_3:57452107-57452126 Msa0820240:intron 30.0%
AATTGTATGATCCTAGTAGA+GGG - chr5_3:57452244-57452263 Msa0820240:intron 30.0%
CTGGACATATGATTCAAAAA+AGG - chr5_3:57452329-57452348 Msa0820240:intron 30.0%
TATGATTCAAAAAAGGAGAC+TGG - chr5_3:57452336-57452355 Msa0820240:intron 30.0%
! TCATATTCCTTATTTCCGAA+AGG - chr5_3:57452422-57452441 Msa0820240:intron 30.0%
GCTAAAGACAAGAACAAAAT+AGG + chr5_3:57452463-57452482 None:intergenic 30.0%
! AAAGAGCTGACAAAATCTTT+TGG - chr5_3:57452650-57452669 Msa0820240:CDS 30.0%
!! TGTCTTCAAGTTTTTCACAA+AGG + chr5_3:57452730-57452749 None:intergenic 30.0%
! GTTTGTGCACAATTTCATTT+TGG - chr5_3:57452779-57452798 Msa0820240:intron 30.0%
CATAATGAACTATTGTGTTC+AGG - chr5_3:57452821-57452840 Msa0820240:intron 30.0%
TAAATTAGAATCAAGTGGCA+TGG + chr5_3:57453064-57453083 None:intergenic 30.0%
! TGTTGAAATTGAGTGTTGTG+TGG - chr5_3:57448955-57448974 Msa0820240:CDS 35.0%
! AAGTGATGAGGTTTTCGTTT+AGG - chr5_3:57448988-57449007 Msa0820240:CDS 35.0%
! AGTGATGAGGTTTTCGTTTA+GGG - chr5_3:57448989-57449008 Msa0820240:CDS 35.0%
CGATAGATAATACCATCCAT+TGG + chr5_3:57449266-57449285 None:intergenic 35.0%
GGAAATTGATGTCAGAGTTA+AGG - chr5_3:57449395-57449414 Msa0820240:intron 35.0%
! ATGCATTGATGTTAGAGTCA+AGG - chr5_3:57449428-57449447 Msa0820240:intron 35.0%
GGGTGAGTAATATGAGAAAA+TGG - chr5_3:57449556-57449575 Msa0820240:CDS 35.0%
! TGTATGCGTGTTTTGCATTT+TGG - chr5_3:57449873-57449892 Msa0820240:intron 35.0%
TTCTCTTGAAAGGGAAGAAA+TGG + chr5_3:57450016-57450035 None:intergenic 35.0%
!!! GCGTTACTTTTTCTCTTGAA+AGG + chr5_3:57450026-57450045 None:intergenic 35.0%
TGGGTGGTAATTTGAGAAAA+TGG - chr5_3:57450095-57450114 Msa0820240:intron 35.0%
TGACACATGGAAATAGTGTA+AGG - chr5_3:57450153-57450172 Msa0820240:intron 35.0%
TCTAACATCAATGCATGAAG+TGG + chr5_3:57449424-57449443 None:intergenic 35.0%
ATGTCAATGACATGTGGAAA+TGG - chr5_3:57450414-57450433 Msa0820240:intron 35.0%
TGTCAATGACATGTGGAAAT+GGG - chr5_3:57450415-57450434 Msa0820240:intron 35.0%
ATATCTGCAATGTGAAGTGT+CGG - chr5_3:57450499-57450518 Msa0820240:CDS 35.0%
TGGTTTGAGAAAACATTTCC+TGG - chr5_3:57450540-57450559 Msa0820240:CDS 35.0%
! TTTTCTCCTTCAAATCAAGC+AGG - chr5_3:57450717-57450736 Msa0820240:intron 35.0%
! TCAAGCAGGCCTTTATTTAT+TGG - chr5_3:57450731-57450750 Msa0820240:intron 35.0%
AGACGAGTAAAACAATTGGA+AGG + chr5_3:57450811-57450830 None:intergenic 35.0%
ATTCTCCATGTGAATCTTGA+TGG + chr5_3:57451007-57451026 None:intergenic 35.0%
! GGAGAATTGACAACTTTTCT+AGG - chr5_3:57451020-57451039 Msa0820240:intron 35.0%
! TTGTTGTTGGGAGTTACAAA+TGG - chr5_3:57451074-57451093 Msa0820240:intron 35.0%
!! CTAGATAAAGTGGGCTATTT+GGG + chr5_3:57451194-57451213 None:intergenic 35.0%
!! ACTAGATAAAGTGGGCTATT+TGG + chr5_3:57451195-57451214 None:intergenic 35.0%
AAATAGCCCACTTTATCTAG+TGG - chr5_3:57451194-57451213 Msa0820240:intron 35.0%
AATAGCCCACTTTATCTAGT+GGG - chr5_3:57451195-57451214 Msa0820240:intron 35.0%
! TTTTCCAAAAGGGAACAATG+TGG - chr5_3:57451310-57451329 Msa0820240:intron 35.0%
GGACTATTTGTCCATGTATT+TGG - chr5_3:57451331-57451350 Msa0820240:intron 35.0%
ATCTGCAACATCCAAATACA+TGG + chr5_3:57451345-57451364 None:intergenic 35.0%
TAGATATGCACAGTTTAGCT+TGG - chr5_3:57451391-57451410 Msa0820240:intron 35.0%
!! CATTTCTGGAGTTAAAAGCA+AGG - chr5_3:57451523-57451542 Msa0820240:intron 35.0%
TTTGATGCCATTAGTAGAAG+AGG - chr5_3:57451553-57451572 Msa0820240:intron 35.0%
ACAATCAACCAAAATCAAGC+AGG + chr5_3:57451627-57451646 None:intergenic 35.0%
GGAAAGAAACCAATTTGGTT+AGG + chr5_3:57451772-57451791 None:intergenic 35.0%
CTGATGGAAAGAAACCAATT+TGG + chr5_3:57451777-57451796 None:intergenic 35.0%
ATACTAACAAGTCCAACCTT+AGG + chr5_3:57451915-57451934 None:intergenic 35.0%
ACCATTAGACAAAATGGAAG+AGG - chr5_3:57452076-57452095 Msa0820240:intron 35.0%
! TCCTCTTCCATTTTGTCTAA+TGG + chr5_3:57452080-57452099 None:intergenic 35.0%
!! GTGAAAGTGCACATAGTTTT+TGG - chr5_3:57452106-57452125 Msa0820240:intron 35.0%
GAATTGTATGATCCTAGTAG+AGG - chr5_3:57452243-57452262 Msa0820240:intron 35.0%
TTCATAAGATACCCTCTACT+AGG + chr5_3:57452258-57452277 None:intergenic 35.0%
TACTCTTATAATTGAAGCCG+AGG - chr5_3:57452281-57452300 Msa0820240:intron 35.0%
TCCAGTAATCAACAATCCTA+CGG + chr5_3:57452314-57452333 None:intergenic 35.0%
AAAAAGGAGACTGGATATGT+TGG - chr5_3:57452345-57452364 Msa0820240:intron 35.0%
AAAAGGAGACTGGATATGTT+GGG - chr5_3:57452346-57452365 Msa0820240:intron 35.0%
TTGTTGCTATCCAGTTAAAC+AGG + chr5_3:57452489-57452508 None:intergenic 35.0%
TGGATAGCAACAATGATGTT+TGG - chr5_3:57452496-57452515 Msa0820240:intron 35.0%
! AGCTGACAAAATCTTTTGGA+TGG - chr5_3:57452654-57452673 Msa0820240:CDS 35.0%
! GCTGACAAAATCTTTTGGAT+GGG - chr5_3:57452655-57452674 Msa0820240:CDS 35.0%
AATTGTGCACAAACATCTGA+TGG + chr5_3:57452773-57452792 None:intergenic 35.0%
GGACTATAAATCAACACGAA+AGG - chr5_3:57452917-57452936 Msa0820240:intron 35.0%
!! ACACGAAAGGAGTCATTTTA+TGG - chr5_3:57452930-57452949 Msa0820240:intron 35.0%
GATCTTCAACTTGATGTCAA+AGG - chr5_3:57453107-57453126 Msa0820240:five_prime_UTR 35.0%
! TCAAAGGAAGCATAAACATC+AGG + chr5_3:57453137-57453156 None:intergenic 35.0%
TGGTTGAAGGAAAACAATGG+AGG + chr5_3:57448738-57448757 None:intergenic 40.0%
AAGAGTGAGGTTACGTCAAT+CGG + chr5_3:57448813-57448832 None:intergenic 40.0%
GGTTAGAACTAGAAGTGATG+AGG - chr5_3:57448976-57448995 Msa0820240:CDS 40.0%
! AGGTTTTCGTTTAGGGATTG+TGG - chr5_3:57448996-57449015 Msa0820240:CDS 40.0%
!! ATCTACAAAGCACTGACATG+TGG - chr5_3:57449529-57449548 Msa0820240:CDS 40.0%
! ACTAGTACATGTGTTGGTGT+TGG - chr5_3:57449593-57449612 Msa0820240:CDS 40.0%
ACACCTTCAATGTGGAATGT+CGG - chr5_3:57449625-57449644 Msa0820240:CDS 40.0%
! GCTTTTGATCTACATAGCAC+TGG - chr5_3:57450044-57450063 Msa0820240:intron 40.0%
TTTGACATGACACTGACACA+TGG - chr5_3:57450140-57450159 Msa0820240:intron 40.0%
TGTCATTGACATGTCTTGAG+TGG + chr5_3:57450406-57450425 None:intergenic 40.0%
CAAGACATGTCAATGACATG+TGG - chr5_3:57450408-57450427 Msa0820240:intron 40.0%
CTTCACATTGCAGATATGTC+CGG + chr5_3:57450496-57450515 None:intergenic 40.0%
! TAAAGGCCTGCTTGATTTGA+AGG + chr5_3:57450726-57450745 None:intergenic 40.0%
!! CATGTGAATCTTGATGGTGA+AGG + chr5_3:57451001-57451020 None:intergenic 40.0%
CTTCACCATCAAGATTCACA+TGG - chr5_3:57450999-57451018 Msa0820240:intron 40.0%
CAGTAGACATGCTCTTAGAT+AGG - chr5_3:57451149-57451168 Msa0820240:intron 40.0%
ATAGCCCACTTTATCTAGTG+GGG - chr5_3:57451196-57451215 Msa0820240:intron 40.0%
ACTTCCCCACTAGATAAAGT+GGG + chr5_3:57451203-57451222 None:intergenic 40.0%
TGCTGAAGATGAAGACACAT+GGG + chr5_3:57451244-57451263 None:intergenic 40.0%
TTGCTGAAGATGAAGACACA+TGG + chr5_3:57451245-57451264 None:intergenic 40.0%
! TAGTCCACATTGTTCCCTTT+TGG + chr5_3:57451317-57451336 None:intergenic 40.0%
AGCAGGCTTCTCAGAAAAAA+TGG + chr5_3:57451610-57451629 None:intergenic 40.0%
!! ACAGAGAAGCATCATTCTCA+GGG + chr5_3:57451660-57451679 None:intergenic 40.0%
!! TACAGAGAAGCATCATTCTC+AGG + chr5_3:57451661-57451680 None:intergenic 40.0%
AGGCTAGGTGCACAAAATAA+TGG + chr5_3:57451718-57451737 None:intergenic 40.0%
AACAAGCAACAACAAAGGCT+AGG + chr5_3:57451733-57451752 None:intergenic 40.0%
AAGTCAGAGCCTAACCAAAT+TGG - chr5_3:57451760-57451779 Msa0820240:intron 40.0%
GAAAGAGCTCAAGAAAGAGA+AGG + chr5_3:57452026-57452045 None:intergenic 40.0%
GGATCATACAATTCACCAAG+AGG + chr5_3:57452237-57452256 None:intergenic 40.0%
AATCAACAATCCTACGGACA+AGG + chr5_3:57452308-57452327 None:intergenic 40.0%
! TCCGTAGGATTGTTGATTAC+TGG - chr5_3:57452310-57452329 Msa0820240:intron 40.0%
ATATGTTGGGCTTAAGAACC+AGG - chr5_3:57452359-57452378 Msa0820240:intron 40.0%
TATGTTGGGCTTAAGAACCA+GGG - chr5_3:57452360-57452379 Msa0820240:intron 40.0%
! TTCCTTATTTCCGAAAGGTC+AGG - chr5_3:57452427-57452446 Msa0820240:intron 40.0%
AGAAACAAAGCCTGACCTTT+CGG + chr5_3:57452440-57452459 None:intergenic 40.0%
TGCTATCCAGTTAAACAGGT+GGG + chr5_3:57452485-57452504 None:intergenic 40.0%
TTGCTATCCAGTTAAACAGG+TGG + chr5_3:57452486-57452505 None:intergenic 40.0%
GGCATATCATTCTCTGTTGT+AGG + chr5_3:57452557-57452576 None:intergenic 40.0%
TGCACTCGATGTAGTTCATA+TGG + chr5_3:57452890-57452909 None:intergenic 40.0%
TGTTGAAGTTGAACGTCTTG+AGG - chr5_3:57453163-57453182 Msa0820240:five_prime_UTR 40.0%
GTTGAAGTTGAACGTCTTGA+GGG - chr5_3:57453164-57453183 Msa0820240:five_prime_UTR 40.0%
TTGAAGTTGAACGTCTTGAG+GGG - chr5_3:57453165-57453184 Msa0820240:five_prime_UTR 40.0%
AACGAGATCACACCAGAAGA+AGG + chr5_3:57448686-57448705 None:intergenic 45.0%
CGGTGGTTGAAGGAAAACAA+TGG + chr5_3:57448741-57448760 None:intergenic 45.0%
GGTTATGGAAATTGACCTCG+CGG + chr5_3:57448766-57448785 None:intergenic 45.0%
CATGATGGTCATGACGGTTA+TGG + chr5_3:57448781-57448800 None:intergenic 45.0%
AGGAGTCATGATGGTCATGA+CGG + chr5_3:57448787-57448806 None:intergenic 45.0%
ACGAAAAACGAGAGTAGCGA+AGG + chr5_3:57448836-57448855 None:intergenic 45.0%
GTCGATCAGAAGTAGTGTGA+TGG - chr5_3:57449105-57449124 Msa0820240:intron 45.0%
!! GGTTTTGTAGCAACAACAGC+AGG - chr5_3:57449172-57449191 Msa0820240:CDS 45.0%
TTTGTAGCAACAACAGCAGG+AGG - chr5_3:57449175-57449194 Msa0820240:CDS 45.0%
!! AAAGCACTGACATGTGGACA+TGG - chr5_3:57449535-57449554 Msa0820240:CDS 45.0%
!! AAGCACTGACATGTGGACAT+GGG - chr5_3:57449536-57449555 Msa0820240:CDS 45.0%
!! TGGAATGTCGGTGCTACATA+GGG - chr5_3:57449637-57449656 Msa0820240:CDS 45.0%
TTGAATGCAACCACATGGGT+CGG - chr5_3:57450461-57450480 Msa0820240:CDS 45.0%
!! TGAAGTGTCGGTGCTACATA+AGG - chr5_3:57450511-57450530 Msa0820240:CDS 45.0%
!! GAAGTGTCGGTGCTACATAA+GGG - chr5_3:57450512-57450531 Msa0820240:CDS 45.0%
! GGTGCTACATAAGGGTTGAT+TGG - chr5_3:57450520-57450539 Msa0820240:CDS 45.0%
CACTTCCCCACTAGATAAAG+TGG + chr5_3:57451204-57451223 None:intergenic 45.0%
! GATTCAACTAGTCTGCCCTA+CGG - chr5_3:57451362-57451381 Msa0820240:intron 45.0%
GCATATCTACTCCAACCGTA+GGG + chr5_3:57451380-57451399 None:intergenic 45.0%
TGCATATCTACTCCAACCGT+AGG + chr5_3:57451381-57451400 None:intergenic 45.0%
! CTGAGAAGCCTGCTTGATTT+TGG - chr5_3:57451616-57451635 Msa0820240:intron 45.0%
AAACAGATGCAGATGGCTGA+TGG + chr5_3:57451793-57451812 None:intergenic 45.0%
TTCACATCCTTCATGCCTCT+TGG - chr5_3:57452219-57452238 Msa0820240:intron 45.0%
! CAATTCACCAAGAGGCATGA+AGG + chr5_3:57452229-57452248 None:intergenic 45.0%
TCATATAGCATGTAGCTCCC+TGG + chr5_3:57452380-57452399 None:intergenic 45.0%
AGCCTGACCTTTCGGAAATA+AGG + chr5_3:57452432-57452451 None:intergenic 45.0%
CTTTAGCCCACCTGTTTAAC+TGG - chr5_3:57452476-57452495 Msa0820240:intron 45.0%
GCAACAATGATGTTTGGTCC+TGG - chr5_3:57452502-57452521 Msa0820240:intron 45.0%
GGTCCTGGATATTGCATTTC+AGG - chr5_3:57452517-57452536 Msa0820240:intron 45.0%
CAGCCTGAAATGCAATATCC+AGG + chr5_3:57452523-57452542 None:intergenic 45.0%
CATTCTCTGTTGTAGGCATG+TGG + chr5_3:57452550-57452569 None:intergenic 45.0%
ACAGAGAATGATATGCCCTC+TGG - chr5_3:57452560-57452579 Msa0820240:intron 45.0%
AACAAACTTTGCAGAGCCAG+GGG + chr5_3:57452593-57452612 None:intergenic 45.0%
GAACAAACTTTGCAGAGCCA+GGG + chr5_3:57452594-57452613 None:intergenic 45.0%
AGAACAAACTTTGCAGAGCC+AGG + chr5_3:57452595-57452614 None:intergenic 45.0%
!! CAACACTGGTGTCACTATAC+TGG + chr5_3:57452625-57452644 None:intergenic 45.0%
! CAGCTCTTTTGTTGCAACAC+TGG + chr5_3:57452639-57452658 None:intergenic 45.0%
CTACATCGAGTGCATCAATG+TGG - chr5_3:57452896-57452915 Msa0820240:intron 45.0%
TGAAGTTGAACGTCTTGAGG+GGG - chr5_3:57453166-57453185 Msa0820240:five_prime_UTR 45.0%
AATCGGAGCAGGAGTCATGA+TGG + chr5_3:57448796-57448815 None:intergenic 50.0%
AGAGTAGCGAAGGAAGAGTG+AGG + chr5_3:57448826-57448845 None:intergenic 50.0%
TTCTCAGCCAAATCCGCATG+CGG + chr5_3:57449230-57449249 None:intergenic 50.0%
!! CATGTGTTGGTGTTGGACAC+TGG - chr5_3:57449600-57449619 Msa0820240:CDS 50.0%
CACTGGACACACCTTCAATG+TGG - chr5_3:57449617-57449636 Msa0820240:CDS 50.0%
! GCACCGACATTCCACATTGA+AGG + chr5_3:57449631-57449650 None:intergenic 50.0%
!! GTGGAATGTCGGTGCTACAT+AGG - chr5_3:57449636-57449655 Msa0820240:CDS 50.0%
! GGTGCTACATAGGGCTTGAT+TGG - chr5_3:57449646-57449665 Msa0820240:CDS 50.0%
ACGACCCTGACACATGGAAA+TGG - chr5_3:57450075-57450094 Msa0820240:intron 50.0%
CGACCCTGACACATGGAAAT+GGG - chr5_3:57450076-57450095 Msa0820240:intron 50.0%
CCACCCATTTCCATGTGTCA+GGG + chr5_3:57450082-57450101 None:intergenic 50.0%
ACCACCCATTTCCATGTGTC+AGG + chr5_3:57450083-57450102 None:intergenic 50.0%
CATGTCTTGAGTGGCATGTC+TGG + chr5_3:57450397-57450416 None:intergenic 50.0%
GATGGTGAAGGATCCTCAAC+AGG + chr5_3:57450989-57451008 None:intergenic 50.0%
AAGTACACGCCTGTTCAGAG+TGG + chr5_3:57451288-57451307 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr5_3:57451855-57451874 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr5_3:57451854-57451873 None:intergenic 50.0%
AGCTCTTTCCACGAGTCTTG+AGG - chr5_3:57452037-57452056 Msa0820240:intron 50.0%
GCTCTTTCCACGAGTCTTGA+GGG - chr5_3:57452038-57452057 Msa0820240:intron 50.0%
CGCAGCATCAGTTCAATGCA+CGG - chr5_3:57452181-57452200 Msa0820240:intron 50.0%
GCAGCATCAGTTCAATGCAC+GGG - chr5_3:57452182-57452201 Msa0820240:intron 50.0%
TCAATGCACGGGAAAGTGAC+TGG - chr5_3:57452193-57452212 Msa0820240:intron 50.0%
CAATGCACGGGAAAGTGACT+GGG - chr5_3:57452194-57452213 Msa0820240:intron 50.0%
AATGCACGGGAAAGTGACTG+GGG - chr5_3:57452195-57452214 Msa0820240:intron 50.0%
AATCCTACGGACAAGGACCT+CGG + chr5_3:57452301-57452320 None:intergenic 50.0%
ACAAACTTTGCAGAGCCAGG+GGG + chr5_3:57452592-57452611 None:intergenic 50.0%
TGTTCAGGCAACTGTCGTTG+AGG - chr5_3:57452836-57452855 Msa0820240:intron 50.0%
GTTCAGGCAACTGTCGTTGA+GGG - chr5_3:57452837-57452856 Msa0820240:intron 50.0%
TGGAAATTGACCTCGCGGTG+CGG + chr5_3:57448761-57448780 None:intergenic 55.0%
GAGGTTACGTCAATCGGAGC+AGG + chr5_3:57448807-57448826 None:intergenic 55.0%
CCCTGACACATGGAAATGGG+TGG - chr5_3:57450079-57450098 Msa0820240:intron 55.0%
GCAACCACATGGGTCGGTAT+CGG - chr5_3:57450467-57450486 Msa0820240:CDS 55.0%
ACCTGAAACCGCCAACACTG+TGG - chr5_3:57450961-57450980 Msa0820240:intron 55.0%
!! TCCACAGTGTTGGCGGTTTC+AGG + chr5_3:57450965-57450984 None:intergenic 55.0%
! AACAGGCTCCACAGTGTTGG+CGG + chr5_3:57450972-57450991 None:intergenic 55.0%
CTCAACAGGCTCCACAGTGT+TGG + chr5_3:57450975-57450994 None:intergenic 55.0%
CAACACTGTGGAGCCTGTTG+AGG - chr5_3:57450973-57450992 Msa0820240:intron 55.0%
! CAACTAGTCTGCCCTACGGT+TGG - chr5_3:57451366-57451385 Msa0820240:intron 55.0%
AGGGTTTCCCTCAAGACTCG+TGG + chr5_3:57452048-57452067 None:intergenic 55.0%
AAATTGACCTCGCGGTGCGG+TGG + chr5_3:57448758-57448777 None:intergenic 60.0%
AGAGATGCTTGTGCCGCACG+CGG - chr5_3:57449202-57449221 Msa0820240:CDS 60.0%
CGAGACACGACCCTGACACA+TGG - chr5_3:57450069-57450088 Msa0820240:intron 60.0%
GTGTCCGATACCGACCCATG+TGG + chr5_3:57450474-57450493 None:intergenic 60.0%
! CATGGGTCGGTATCGGACAC+CGG - chr5_3:57450474-57450493 Msa0820240:CDS 60.0%
AAGCCGAGGTCCTTGTCCGT+AGG - chr5_3:57452295-57452314 Msa0820240:intron 60.0%
CGCGGTTCCGCATGCGGATT+TGG - chr5_3:57449220-57449239 Msa0820240:CDS 65.0%
GCCAGGGGGATGCTTCCAGA+GGG + chr5_3:57452578-57452597 None:intergenic 65.0%
AGCCAGGGGGATGCTTCCAG+AGG + chr5_3:57452579-57452598 None:intergenic 65.0%
CCTCGCGGTGCGGTGGTTGA+AGG + chr5_3:57448751-57448770 None:intergenic 70.0%
CCTTCAACCACCGCACCGCG+AGG - chr5_3:57448748-57448767 Msa0820240:CDS 70.0%
TCCGCATGCGGAACCGCGTG+CGG + chr5_3:57449218-57449237 None:intergenic 70.0%
!! GCCCTCTGGAAGCATCCCCC+TGG - chr5_3:57452574-57452593 Msa0820240:intron 70.0%
GCCGCACGCGGTTCCGCATG+CGG - chr5_3:57449214-57449233 Msa0820240:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 57448676 57453205 57448676 ID=Msa0820240;Name=Msa0820240
chr5_3 mRNA 57448676 57453205 57448676 ID=Msa0820240-mRNA-1;Parent=Msa0820240;Name=Msa0820240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|0.85|0.87|8|0|372
chr5_3 exon 57448676 57448773 57448676 ID=Msa0820240-mRNA-1:exon:17358;Parent=Msa0820240-mRNA-1
chr5_3 exon 57448930 57449038 57448930 ID=Msa0820240-mRNA-1:exon:17357;Parent=Msa0820240-mRNA-1
chr5_3 exon 57449124 57449342 57449124 ID=Msa0820240-mRNA-1:exon:17356;Parent=Msa0820240-mRNA-1
chr5_3 exon 57449438 57449703 57449438 ID=Msa0820240-mRNA-1:exon:17355;Parent=Msa0820240-mRNA-1
chr5_3 exon 57450426 57450583 57450426 ID=Msa0820240-mRNA-1:exon:17354;Parent=Msa0820240-mRNA-1
chr5_3 exon 57450786 57450930 57450786 ID=Msa0820240-mRNA-1:exon:17353;Parent=Msa0820240-mRNA-1
chr5_3 exon 57452609 57452699 57452609 ID=Msa0820240-mRNA-1:exon:17352;Parent=Msa0820240-mRNA-1
chr5_3 exon 57453063 57453205 57453063 ID=Msa0820240-mRNA-1:exon:17351;Parent=Msa0820240-mRNA-1
chr5_3 five_prime_UTR 57453093 57453205 57453093 ID=Msa0820240-mRNA-1:five_prime_utr;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57453063 57453092 57453063 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57452609 57452699 57452609 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57450786 57450930 57450786 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57450426 57450583 57450426 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57449438 57449703 57449438 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57449124 57449342 57449124 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57448930 57449038 57448930 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
chr5_3 CDS 57448676 57448773 57448676 ID=Msa0820240-mRNA-1:cds;Parent=Msa0820240-mRNA-1
Gene Sequence

>Msa0820240

ATGACCATCATGACTCCTGCTCCGATTGACCAACAACAGCAGGAGGATGAAGAGATGCTTGTGCCGCACGCGGTTCCGCATGCGGATTTGGCTGAGAACAATAATCATCAACCAATGGATGTGGTTGCTCAACCTGAAACCGCCAACACTGTGGAGCCTGTTGAGGATCCTTCACCATCAAGATTCACATGGAGAATTGACAACTTTTCTAGGGTGAATTTGAAAAAGCTCTATTCAGATGTATTTGTTGTTGGGAGTTACAAATGGCGTGTACTTATTTTTCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAACTAGTCTGCCCTACGGTTGGAGTAGATATGCACAGTTTAGCTTGGCTGTTGTTAATCAGATCCATAATAAGTACACTGTGAGAAAAGATACGCAGCATCAGTTCAATGCACGGGAAAGTGACTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTATGAATGATACTCTTATAATTGAAGCCGAGGTCCTTGTCCGTAGGATTGTTGATTACTGGACATATGATTCAAAAAAGGAGACTGGATATGTTGGGCTTAAGAACCAGGGAGCTACATGCTATATGAATTCTCTGCTTCAAACTCTGTATCATATTCCTTATTTCCGAAAGGCTGTATACCACATGCCTACAACAGAGAATGATATGCCCTCTGGAAGCATCCCCCTGGCTCTGCAAAGTTTGTTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAAGAGCTGACAAAATCTTTTGGATGGGATACATATGATTCTTTCTTGCAGCATGATGTTCAAGAACTAAATAGAGTCCTTTGTGAAAAACTTGAAGACAAAATGAAGGCAACTGTCGTTGAGGGAACTATTCAGAAATTGTTTGAAGGGCACCATATGAACTACATCGAGTGCATCAATGTGGACTATAAATCAACACGAAAGGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGTTGTCCTGATGTTTATGCTTCCTTTGACAAATATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATACCATGCT
Protein sequence

>Msa0820240

MTIMTPAPIDQQQQEDEEMLVPHAVPHADLAENNNHQPMDVVAQPETANTVEPVEDPSPSRFTWRIDNFSRVNLKKLYSDVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIHNKYTVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLIIEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHA