AlfalfaGEDB | Msa0820830

M. sativa cultivar zhongmu-4 / Msa0820830

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820830	XP_003617145.1	99.176	364	3	0	8	371	78	441	0.0	758

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820830	sp\|Q2V452\|CIPK3_ARATH	80.220	364	71	1	8	371	79	441	0.0	628

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820830	G7K7Q8	99.176	364	3	0	8	371	78	441	0.0	758

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0820830	Msa0861110	0.992604	2.657702e-194	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820830	MtrunA17_Chr5g0441011	99.176	364	3	0	8	371	78	441	0.0	758
Msa0820830	MtrunA17_Chr8g0346081	69.748	357	104	3	7	362	81	434	0.0	521
Msa0820830	MtrunA17_Chr2g0304111	65.928	361	116	4	8	362	88	447	2.88e-179	505
Msa0820830	MtrunA17_Chr8g0346071	68.156	358	109	4	6	362	80	433	8.66e-178	501
Msa0820830	MtrunA17_Chr4g0063881	57.143	357	147	3	8	360	76	430	1.01e-154	442
Msa0820830	MtrunA17_Chr5g0428031	54.121	364	161	3	8	367	74	435	2.51e-145	419
Msa0820830	MtrunA17_Chr4g0013131	53.005	366	164	6	8	368	77	439	8.56e-135	393
Msa0820830	MtrunA17_Chr7g0244521	52.762	362	158	8	8	359	77	435	1.13e-127	374
Msa0820830	MtrunA17_Chr4g0069301	52.286	350	163	3	8	354	91	439	1.45e-123	363
Msa0820830	MtrunA17_Chr2g0284011	49.727	366	170	7	8	362	77	439	1.21e-121	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0820830	AT2G26980.4	80.220	364	71	1	8	371	89	451	628
Msa0820830	AT2G26980.3	80.220	364	71	1	8	371	79	441	628
Msa0820830	AT5G21326.1	78.814	354	75	0	8	361	78	431	598
Msa0820830	AT2G26980.5	77.844	334	69	1	8	341	79	407	555
Msa0820830	AT1G30270.1	69.837	368	104	4	7	368	95	461	538
Msa0820830	AT1G30270.2	69.837	368	104	4	7	368	95	461	537
Msa0820830	AT1G30270.3	70.137	365	102	4	10	368	1	364	534
Msa0820830	AT1G01140.1	68.407	364	112	3	7	368	83	445	530
Msa0820830	AT1G01140.2	68.033	366	112	4	7	368	83	447	525
Msa0820830	AT1G01140.3	67.663	368	112	4	7	368	83	449	524

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Find 78 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTCAACAAGCTTGC+AGG	0.333963	5_3:+58492681	Msa0820830:CDS
AAACCTTAATGTTGCCACAG+AGG	0.668073	5_3:+58491944	Msa0820830:CDS
AAACTTTCAACAAGCTTGCA+GGG	0.553123	5_3:+58492682	Msa0820830:CDS
AAATTTGTTTGATGTTGAAC+AGG	0.448519	5_3:+58491093	Msa0820830:CDS
AACCTGCAATCAATACAAAG+AGG	0.628440	5_3:-58489874	None:intergenic
AACCTTAAAGTCTCCGATTT+TGG	0.136576	5_3:+58489493	Msa0820830:CDS
AAGGTAAACCATGGACGGAT+GGG	0.634281	5_3:+58489242	Msa0820830:intron
AAGGTTCAGCCCTCTAGACA+TGG	0.554908	5_3:-58491068	None:intergenic
AATCAACTCAAATGCATTCA+TGG	0.391948	5_3:-58491044	None:intergenic
AATGATGTTTCTTACAGTCA+TGG	0.488459	5_3:-58490113	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTCATGATTTG+TGG	-	chr5_3:58489103-58489122	None:intergenic	30.0%
CAAGAAAAGAAAAACTCAGA+AGG	-	chr5_3:58489564-58489583	None:intergenic	30.0%
TACAAAATGGTTGTCTTTAC+AGG	+	chr5_3:58489635-58489654	Msa0820830:intron	30.0%
TTAATGATAGAGGCTATGAT+GGG	+	chr5_3:58489819-58489838	Msa0820830:CDS	30.0%
ATAAGATTAGGGTCATCAAA+AGG	-	chr5_3:58489905-58489924	None:intergenic	30.0%
ATTGAAAGAGTAAAACTGGA+GGG	-	chr5_3:58489974-58489993	None:intergenic	30.0%
AATTGAAAGAGTAAAACTGG+AGG	-	chr5_3:58489975-58489994	None:intergenic	30.0%
ATGATGTTTCTTACAGTCAT+GGG	-	chr5_3:58490115-58490134	None:intergenic	30.0%
AATGATGTTTCTTACAGTCA+TGG	-	chr5_3:58490116-58490135	None:intergenic	30.0%
CAGAAGACAGAGTTAAAATA+AGG	+	chr5_3:58490536-58490555	Msa0820830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	58488932	58492753	58488932	ID=Msa0820830;Name=Msa0820830
chr5_3	mRNA	58488932	58492753	58488932	ID=Msa0820830-mRNA-1;Parent=Msa0820830;Name=Msa0820830-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.18\|0.08\|1\|1\|1\|12\|0\|371
chr5_3	exon	58488932	58489027	58488932	ID=Msa0820830-mRNA-1:exon:17776;Parent=Msa0820830-mRNA-1
chr5_3	exon	58489245	58489352	58489245	ID=Msa0820830-mRNA-1:exon:17777;Parent=Msa0820830-mRNA-1
chr5_3	exon	58489463	58489543	58489463	ID=Msa0820830-mRNA-1:exon:17778;Parent=Msa0820830-mRNA-1
chr5_3	exon	58489657	58489710	58489657	ID=Msa0820830-mRNA-1:exon:17779;Parent=Msa0820830-mRNA-1
chr5_3	exon	58489815	58489940	58489815	ID=Msa0820830-mRNA-1:exon:17780;Parent=Msa0820830-mRNA-1
chr5_3	exon	58490031	58490120	58490031	ID=Msa0820830-mRNA-1:exon:17781;Parent=Msa0820830-mRNA-1
chr5_3	exon	58490784	58490906	58490784	ID=Msa0820830-mRNA-1:exon:17782;Parent=Msa0820830-mRNA-1
chr5_3	exon	58491004	58491114	58491004	ID=Msa0820830-mRNA-1:exon:17783;Parent=Msa0820830-mRNA-1
chr5_3	exon	58491697	58491810	58491697	ID=Msa0820830-mRNA-1:exon:17784;Parent=Msa0820830-mRNA-1
chr5_3	exon	58491909	58491965	58491909	ID=Msa0820830-mRNA-1:exon:17785;Parent=Msa0820830-mRNA-1
chr5_3	exon	58492049	58492123	58492049	ID=Msa0820830-mRNA-1:exon:17786;Parent=Msa0820830-mRNA-1
chr5_3	exon	58492673	58492753	58492673	ID=Msa0820830-mRNA-1:exon:17787;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58488932	58489027	58488932	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58489245	58489352	58489245	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58489463	58489543	58489463	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58489657	58489710	58489657	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58489815	58489940	58489815	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58490031	58490120	58490031	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58490784	58490906	58490784	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58491004	58491114	58491004	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58491697	58491810	58491697	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58491909	58491965	58491909	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58492049	58492123	58492049	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1
chr5_3	CDS	58492673	58492753	58492673	ID=Msa0820830-mRNA-1:cds;Parent=Msa0820830-mRNA-1

Gene Sequence

>Msa0820830

ATGTCGAAACATTTTTGCTTACAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGGATGGGTGAACCTGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGACTATTGTCACAGCAGAGGTGTCTATCACAGAGATCTGAAGCCAGAAAATTTGCTATTAGATGCTTATGGTAACCTTAAAGTCTCCGATTTTGGATTGAGTGCACTCTCCCAGCAAGTTAGGGATGACGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCAGAGGTTCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTGATCCTCTTTGTATTGATTGCAGGTTACTTGCCTTTTGATGACCCTAATCTTATGGAACTGTATAAAAAAATCTCGTCTGCTGATTTTACTTGCCCCCCGTGGCTTTCTTTCAGCGCGAGGAAATTGATAACTCGAATCTTGGATCCCAATCCCATGACTCGTATCACTATGGCTGAGATTTTGGACGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAAAGCGGGGAAACCAACCTCGACGATGTAGAAGCCGTCTTTAAAGATTCGGAAGAGCACCATGTGACAGAAAAGAAAGAAGAGCAGCCAACATCCATGAATGCATTTGAGTTGATTTCCATGTCTAGAGGGCTGAACCTTGAAAATTTGTTTGATGTTGAACAGGGTTTTAAAAGGGAAACAAGGTTCACGTCGCAATCTCCTGCAGACGAGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTTCAAGATGAGGCTTGCAAATTCGAAAGCTGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTATTTCAAGTGGCACCTTCTCTTCACATGGTTGAAGTAAGGAAAGCAAAAGGAGATACGTTGGAGTTCCATAAGTTCTACAAAAAACTTTCAACAAGCTTGCAGGGTGTTGTTTGGAAAACAGAAGATGATATGCAAAAGCAATGTGCTAAATGA

Protein sequence

>Msa0820830

MSKHFCLQVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGEPEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLIAGYLPFDDPNLMELYKKISSADFTCPPWLSFSARKLITRILDPNPMTRITMAEILDDEWFKKDYKPPVFEESGETNLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRGLNLENLFDVEQGFKRETRFTSQSPADEIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLQGVVWKTEDDMQKQCAK*