AlfalfaGEDB | Msa0836710

M. sativa cultivar zhongmu-4 / Msa0836710

KEGG: K00924
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836710	XP_024641018.1	97.569	617	12	3	1	615	1	616	0.0	1232

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836710	sp\|Q9SCS2\|CAMK5_ARATH	70.709	635	132	7	1	615	1	601	0.0	890

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836710	G7K819	93.669	616	9	3	1	615	1	587	0.0	1168

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0715280	Msa0836710	0.986200	5.306963e-166	-8.615850e-47
Msa0798210	Msa0836710	0.847532	1.089650e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836710	MtrunA17_Chr5g0402551	93.669	616	9	3	1	615	1	587	0.0	1168
Msa0836710	MtrunA17_Chr8g0374701	73.558	624	113	6	1	615	1	581	0.0	913
Msa0836710	MtrunA17_Chr4g0045261	70.159	630	134	7	1	615	1	591	0.0	844
Msa0836710	MtrunA17_Chr7g0256001	66.028	574	147	5	53	608	45	588	0.0	773
Msa0836710	MtrunA17_Chr7g0276111	58.748	623	202	10	1	606	1	585	0.0	682
Msa0836710	MtrunA17_Chr3g0127571	64.549	488	141	4	119	606	123	578	0.0	652
Msa0836710	MtrunA17_Chr5g0405421	47.551	490	220	6	123	608	88	544	5.59e-148	439
Msa0836710	MtrunA17_Chr5g0444171	37.988	487	257	8	134	614	92	539	1.52e-113	350
Msa0836710	MtrunA17_Chr5g0441691	38.526	475	251	7	134	604	68	505	7.99e-113	347
Msa0836710	MtrunA17_Chr3g0098951	38.697	491	254	7	134	614	84	537	1.47e-110	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0836710	AT3G50530.2	70.892	639	155	8	1	615	1	632	902
Msa0836710	AT3G50530.1	70.709	635	132	7	1	615	1	601	890
Msa0836710	AT3G19100.1	63.307	635	177	6	1	615	1	599	788
Msa0836710	AT1G49580.1	62.975	632	175	6	1	608	1	597	783
Msa0836710	AT2G41140.1	63.652	597	169	7	34	613	10	575	771
Msa0836710	AT3G56760.1	60.766	627	181	8	1	613	1	576	760
Msa0836710	AT2G46700.1	61.996	521	165	4	88	606	95	584	640
Msa0836710	AT5G24430.1	54.120	619	235	8	1	606	1	583	625
Msa0836710	AT3G49370.1	53.809	617	239	9	1	606	1	582	600
Msa0836710	AT2G46700.2	63.364	434	128	3	173	606	1	403	547

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Find 146 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTGAGAGCTTTGAA+TGG	0.495326	5_4:-10320586	Msa0836710:CDS
AAACCTCTTTCATTCAGCTC+TGG	0.440367	5_4:+10317161	None:intergenic
AAACGCAAACTCCTATGGCA+AGG	0.631837	5_4:+10317315	None:intergenic
AAATGCAACAGATGCAATGA+AGG	0.515727	5_4:-10318230	Msa0836710:CDS
AAATTGAAGCACTCGACCAC+TGG	0.463660	5_4:-10318015	Msa0836710:CDS
AACACACTACAACTTTACAG+TGG	0.660619	5_4:+10317291	None:intergenic
AACGTGCACGCTTCTCCCAG+TGG	0.649685	5_4:+10317999	None:intergenic
AACTGAAATAATCAGGAGCT+TGG	0.420518	5_4:-10317541	Msa0836710:intron
AACTGAAGGCTATAGACTTT+GGG	0.402040	5_4:-10319563	Msa0836710:CDS
AAGAACAGCATGAACAGGAA+TGG	0.566904	5_4:+10317507	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTTTATAGTTAGTAGTG+GGG	+	chr5_4:10317181-10317200	None:intergenic	30.0%
GATGAATAGAGAGAAGAAAA+TGG	+	chr5_4:10317233-10317252	None:intergenic	30.0%
ATATCTACTTCCAAAATGCT+TGG	+	chr5_4:10317669-10317688	None:intergenic	30.0%
TGAACACTTGTGAAACTATT+TGG	-	chr5_4:10318209-10318228	Msa0836710:CDS	30.0%
GAACACTTGTGAAACTATTT+GGG	-	chr5_4:10318210-10318229	Msa0836710:CDS	30.0%
AAAAACACAACGGACATATT+TGG	+	chr5_4:10318501-10318520	None:intergenic	30.0%
ATTTCACAAAAGATGAACTG+CGG	+	chr5_4:10318713-10318732	None:intergenic	30.0%
GAAGATGAAAGAGTTTAAGA+AGG	+	chr5_4:10318833-10318852	None:intergenic	30.0%
TGTTGGACAGAATATTATCA+AGG	-	chr5_4:10318876-10318895	Msa0836710:intron	30.0%
AGCATCTCCATGATAATAAA+TGG	+	chr5_4:10319686-10319705	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	10317154	10322039	10317154	ID=Msa0836710;Name=Msa0836710
chr5_4	mRNA	10317154	10322039	10317154	ID=Msa0836710-mRNA-1;Parent=Msa0836710;Name=Msa0836710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=133\|1\|0.9\|1\|1\|1\|10\|257\|615
chr5_4	exon	10317154	10317548	10317154	ID=Msa0836710-mRNA-1:exon:4592;Parent=Msa0836710-mRNA-1
chr5_4	exon	10317937	10318104	10317937	ID=Msa0836710-mRNA-1:exon:4591;Parent=Msa0836710-mRNA-1
chr5_4	exon	10318201	10318263	10318201	ID=Msa0836710-mRNA-1:exon:4590;Parent=Msa0836710-mRNA-1
chr5_4	exon	10318346	10318453	10318346	ID=Msa0836710-mRNA-1:exon:4589;Parent=Msa0836710-mRNA-1
chr5_4	exon	10318973	10319085	10318973	ID=Msa0836710-mRNA-1:exon:4588;Parent=Msa0836710-mRNA-1
chr5_4	exon	10319160	10319619	10319160	ID=Msa0836710-mRNA-1:exon:4587;Parent=Msa0836710-mRNA-1
chr5_4	exon	10320067	10320175	10320067	ID=Msa0836710-mRNA-1:exon:4586;Parent=Msa0836710-mRNA-1
chr5_4	exon	10320296	10320337	10320296	ID=Msa0836710-mRNA-1:exon:4585;Parent=Msa0836710-mRNA-1
chr5_4	exon	10320520	10320650	10320520	ID=Msa0836710-mRNA-1:exon:4584;Parent=Msa0836710-mRNA-1
chr5_4	exon	10321391	10322039	10321391	ID=Msa0836710-mRNA-1:exon:4583;Parent=Msa0836710-mRNA-1
chr5_4	five_prime_UTR	10321907	10322039	10321907	ID=Msa0836710-mRNA-1:five_prime_utr;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10321391	10321906	10321391	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10320520	10320650	10320520	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10320296	10320337	10320296	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10320067	10320175	10320067	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10319160	10319619	10319160	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10318973	10319085	10318973	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10318346	10318453	10318346	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10318201	10318263	10318201	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10317937	10318104	10317937	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	CDS	10317411	10317548	10317411	ID=Msa0836710-mRNA-1:cds;Parent=Msa0836710-mRNA-1
chr5_4	three_prime_UTR	10317154	10317410	10317154	ID=Msa0836710-mRNA-1:three_prime_utr;Parent=Msa0836710-mRNA-1

Gene Sequence

>Msa0836710

ATGGGTTTATGTACTTCAAAAAATCTCACGAGTCATTCCTCTCACAATTTCAACACTGAACTTCCTCAACAAAACTCCGTCACACTTAACGGTAGTTCTGAACCTCACACAAACTCCGTTACTGTCAATGGCGAAAACTCTAACGAAACAGAAGCCGTTAAGCGATCTCCGTTATTCCCGTTCTACACTCCAAGTCCAGCTCATCAATTCTTCTCTAAGATGTCTCCGGCAAGGATTTTCAAGCGACCGTTTCCTCCACCGTCTCCGGCGAAGCATATAAGATCGCTTCTAGCTCGCCGGCGTGGCTCTGTTGAAGTGTCGATACCGGAAGGTGGTGAAGAGGAGACTGTGGTTGCGCTTGATAAGAATTTTGGATTTTCCAAGCATTTTGGAAGTAGATATGAGGTTGGAGATGAAGTTGGAAGAGGACATTTTGGATATACTTGTGCTGCGAGGTTGAAGAAAGGTGATCGCAAAGGTCAACAAGTTGCTGTTAAAGTCATCCCCAAAGCTAAGATGACATCTGCTATTGCTATCGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGAATGGACATAAGAATCTAGTACGATTCTATGATGCTTATGAAGATCGTGATAATGTCTATATTGTAATGGAATTGTGTGAAGGTGGAGAGCTGTTGGACAGAATATTATCAAGAGGTGGGAAGTACACGGAGGAAGATGCAAAATCTATCCTGAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGGGATCTTAAACCTGAGAACTTCTTGTTCGCATCCAATGACGAGAACTCAGAACTGAAGGCTATAGACTTTGGGCTGTCGGATTTTGTTAAACTTGGTATGCTTGCCCTTTCACGTATATCGCGTGCCATTTATTATCATGGAGATGCTTTGTTTTCTGACTTCTCATTTTGCTTTATAGATGAAAGGCTCAATGATATTGTCGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACTTAGAGCTTATAGTACTGAGGCTGATGTCTGGAGTATTGGAGTGATTGCGTATATTTTATTATGTGGCAGCCGTCCGTTTTGGGCTCGGACTGAGTCTGGTATCTTTCGTACTGTATTGAAATCTGATCCAAGTTTTGACGATCCTCCTTGGCCTTCTCTATCAGATGAGGCAAGCGATTTTGTTAAGAGATTACTAAATAAAGATCCAAGGAAAAGAATGAGTGCAGCACAAGCATTAAGTCATCCGTGGATTAAAGACTATGATGATACGGAAGTACCTTTGGATATTTTAATTTTCAAGCTCATGAAGGCATACATGCGCTCTTCTTCTCTACGAAAAGCTGCTTTAAGGGCTTTGTCTAAGGCATTAACTGTGGATGAGCTAATCTATTTGAAGGAGCAGTTTGCACTTTTAGAACCTAACAAAAGTGGCACCATTAACTTGGAAAATATAAAAGCGGCCTTTTCAGTAAATGCAACAGATGCAATGAAGGAGTCACGCATTGCCGACTTTCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGATTTTGACGAGTTCTGTGCAGCTGCCCTTAGTGTTCATCAAATTGAAGCACTCGACCACTGGGAGAAGCGTGCACGTTATGCCTTTGACCTGTTTGAAAAGGATGGAAACAAGGCCATAGTCATTGACGAATTAGCTTCGGAGCTTGGGCTTGGTCCATCCATTCCTGTTCATGCTGTTCTTCATGATTGGATTCGGCACACTGATGGGAAGTTAAGCTTCCTTGGATTTGTGAAATTGTTGCATGGCCCATCAAGAAGTCTTGCAAAAGTTCAATAG

Protein sequence

>Msa0836710

MGLCTSKNLTSHSSHNFNTELPQQNSVTLNGSSEPHTNSVTVNGENSNETEAVKRSPLFPFYTPSPAHQFFSKMSPARIFKRPFPPPSPAKHIRSLLARRRGSVEVSIPEGGEEETVVALDKNFGFSKHFGSRYEVGDEVGRGHFGYTCAARLKKGDRKGQQVAVKVIPKAKMTSAIAIEDVRREVKILRALNGHKNLVRFYDAYEDRDNVYIVMELCEGGELLDRILSRGGKYTEEDAKSILRQILNAAAFCHLQGVVHRDLKPENFLFASNDENSELKAIDFGLSDFVKLGMLALSRISRAIYYHGDALFSDFSFCFIDERLNDIVGSAYYVAPEVLLRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKSDPSFDDPPWPSLSDEASDFVKRLLNKDPRKRMSAAQALSHPWIKDYDDTEVPLDILIFKLMKAYMRSSSLRKAALRALSKALTVDELIYLKEQFALLEPNKSGTINLENIKAAFSVNATDAMKESRIADFLASLNALQYRRMDFDEFCAAALSVHQIEALDHWEKRARYAFDLFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKVQ*