Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836780 | XP_003611798.1 | 65.546 | 357 | 93 | 7 | 1 | 354 | 1 | 330 | 6.91e-148 | 442 |
| Msa0836780 | XP_003611798.1 | 94.737 | 209 | 11 | 0 | 212 | 420 | 358 | 566 | 1.47e-135 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836780 | sp|Q2YDW2|MSTO1_MOUSE | 35.065 | 231 | 126 | 7 | 2 | 222 | 6 | 222 | 1.21e-32 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836780 | G7K831 | 65.546 | 357 | 93 | 7 | 1 | 354 | 1 | 330 | 3.30e-148 | 442 |
| Msa0836780 | G7K831 | 94.737 | 209 | 11 | 0 | 212 | 420 | 358 | 566 | 7.02e-136 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0772790 | Msa0836780 | 0.834013 | 3.830898e-56 | -8.615850e-47 |
| Msa0798270 | Msa0836780 | 0.855670 | 5.398915e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836780 | MtrunA17_Chr5g0402621 | 65.546 | 357 | 93 | 7 | 1 | 354 | 1 | 330 | 6.35e-152 | 442 |
| Msa0836780 | MtrunA17_Chr5g0402621 | 94.737 | 209 | 11 | 0 | 212 | 420 | 358 | 566 | 1.35e-139 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836780 | AT4G37190.1 | 44.944 | 356 | 166 | 8 | 1 | 355 | 1 | 327 | 1.27e-93 | 293 |
| Msa0836780 | AT4G37190.1 | 57.547 | 212 | 86 | 3 | 212 | 420 | 352 | 562 | 3.57e-72 | 237 |
| Msa0836780 | AT4G37190.2 | 57.547 | 212 | 86 | 3 | 212 | 420 | 306 | 516 | 1.21e-72 | 237 |
| Msa0836780 | AT4G37190.2 | 40.968 | 310 | 153 | 8 | 47 | 355 | 1 | 281 | 3.90e-63 | 212 |
Find 176 sgRNAs with CRISPR-Local
Find 469 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCACTTCTGGAACTTTC+AGG | 0.092542 | 5_4:-10432625 | Msa0836780:intron |
| CAGTGCTGTCTTCCCACTTT+TGG | 0.161805 | 5_4:-10427045 | Msa0836780:CDS |
| TCGTCTCATTTACCATATTT+TGG | 0.235592 | 5_4:+10429743 | None:intergenic |
| CGGTGCCGGCGCGAGTTTGC+AGG | 0.251780 | 5_4:+10432857 | None:intergenic |
| TAGAAAATGGAGTTCAGTTT+TGG | 0.252305 | 5_4:-10429675 | Msa0836780:CDS |
| CAACTTCTTTGCTTAGTCTA+AGG | 0.274024 | 5_4:-10432801 | Msa0836780:intron |
| TGAGGATGGTGAAGACTTAC+AGG | 0.280581 | 5_4:-10428874 | Msa0836780:CDS |
| GCAGAATATGGTGTCAATTC+TGG | 0.281142 | 5_4:-10429054 | Msa0836780:CDS |
| TAGAATGCATACATTGTTCT+TGG | 0.281636 | 5_4:-10426855 | Msa0836780:three_prime_UTR |
| CAAAGTCTATATGAATTAAA+TGG | 0.286733 | 5_4:-10429622 | Msa0836780:CDS |
| TTGCCATTTCCATCAATCTT+TGG | 0.287116 | 5_4:-10427179 | Msa0836780:CDS |
| CTTCTTCATAAAGGCTTTGT+AGG | 0.287139 | 5_4:+10429770 | None:intergenic |
| AGAAGCTTTGGCAACGGGTT+AGG | 0.288799 | 5_4:+10432883 | None:intergenic |
| ACTACGTTGGCTCTCACTTC+TGG | 0.294135 | 5_4:-10432635 | Msa0836780:CDS |
| ACAAATTTGACCAATGCTTC+AGG | 0.296433 | 5_4:-10426787 | Msa0836780:three_prime_UTR |
| TTACTTAGGGGTTGGGGCTT+CGG | 0.298253 | 5_4:-10426963 | Msa0836780:CDS |
| ATTTAATTCATATAGACTTT+GGG | 0.304529 | 5_4:+10429624 | None:intergenic |
| TGTGACTCCCTGCTGATCTA+TGG | 0.316912 | 5_4:-10426629 | Msa0836780:three_prime_UTR |
| GGCAGAGTTACTTAGGGGTT+GGG | 0.317124 | 5_4:-10426970 | Msa0836780:CDS |
| CATTTAATTCATATAGACTT+TGG | 0.317416 | 5_4:+10429623 | None:intergenic |
| GCAGAGTTACTTAGGGGTTG+GGG | 0.322990 | 5_4:-10426969 | Msa0836780:CDS |
| GCAGGAGATGTTGTCTAAAA+TGG | 0.331192 | 5_4:-10426919 | Msa0836780:CDS |
| TATATGAATTAAATGGAGTT+TGG | 0.341239 | 5_4:-10429615 | Msa0836780:CDS |
| GGCCGAGAAGCTTTGGCAAC+GGG | 0.342188 | 5_4:+10432878 | None:intergenic |
| ATTCCACAGAAGCTGGTTCT+AGG | 0.345312 | 5_4:-10426575 | Msa0836780:three_prime_UTR |
| GAAGCTTTGGCAACGGGTTA+GGG | 0.345391 | 5_4:+10432884 | None:intergenic |
| ATAACTGAGAGTCTAGAAAA+TGG | 0.346244 | 5_4:-10429688 | Msa0836780:CDS |
| ATACGAGCCTCTTCATTTGC+TGG | 0.352777 | 5_4:-10426513 | Msa0836780:three_prime_UTR |
| CCGCTGGGGCAGAGTTACTT+AGG | 0.355124 | 5_4:-10426977 | Msa0836780:CDS |
| TGAAGAAGAAAACCAAAATA+TGG | 0.355969 | 5_4:-10429755 | Msa0836780:CDS |
| TTTCTGAGGTTCAGAGGCTT+GGG | 0.366033 | 5_4:+10429804 | None:intergenic |
| CACCATCCTCAGAAATCATT+GGG | 0.366232 | 5_4:+10428886 | None:intergenic |
| GTTTGCAGGCCGAGAAGCTT+TGG | 0.368102 | 5_4:+10432871 | None:intergenic |
| CCTCTTCATTTGCTGGTTGA+AGG | 0.369533 | 5_4:-10426506 | Msa0836780:three_prime_UTR |
| ACCTGGTTTCCAAAGATTGA+TGG | 0.371139 | 5_4:+10427170 | None:intergenic |
| CTCACGCGGTACACTGTATA+AGG | 0.380266 | 5_4:-10430349 | Msa0836780:CDS |
| AGGGCAAGGACGGCAGAATA+TGG | 0.381979 | 5_4:-10429066 | Msa0836780:CDS |
| ATGCCAACACCTGCTTTAAC+AGG | 0.384456 | 5_4:-10429023 | Msa0836780:intron |
| AACCCGTTGCCAAAGCTTCT+CGG | 0.393612 | 5_4:-10432880 | Msa0836780:five_prime_UTR |
| GGGCAGAGTTACTTAGGGGT+TGG | 0.400102 | 5_4:-10426971 | Msa0836780:CDS |
| AGCACTGCTGGAACGTAATC+TGG | 0.402144 | 5_4:+10427061 | None:intergenic |
| GATGGAAATGGCAAGGGAAT+AGG | 0.403632 | 5_4:+10427188 | None:intergenic |
| AATTGTTAGGATGAGTTGAT+TGG | 0.407131 | 5_4:-10432403 | Msa0836780:intron |
| AGAAGAATTGGTGGAAATGC+AGG | 0.412772 | 5_4:-10426937 | Msa0836780:CDS |
| GTCCATGGAGCTCTTGCATC+AGG | 0.412777 | 5_4:-10428834 | Msa0836780:intron |
| GATGCGGCGGAGGGCGGTGC+CGG | 0.414178 | 5_4:+10432843 | None:intergenic |
| CGCTGGGGCAGAGTTACTTA+GGG | 0.418222 | 5_4:-10426976 | Msa0836780:CDS |
| GCAACGGGTTAGGGGTTATG+AGG | 0.427858 | 5_4:+10432893 | None:intergenic |
| TTTCCAAAGATTGATGGAAA+TGG | 0.432823 | 5_4:+10427176 | None:intergenic |
| TCACCATCCTCAGAAATCAT+TGG | 0.433648 | 5_4:+10428885 | None:intergenic |
| GCGAGGCTCCATAGATCAGC+AGG | 0.437418 | 5_4:+10426621 | None:intergenic |
| GGAATTACACGAGGAGCCGC+TGG | 0.438144 | 5_4:-10426993 | Msa0836780:CDS |
| CAAATTTGACCAATGCTTCA+GGG | 0.438473 | 5_4:-10426786 | Msa0836780:three_prime_UTR |
| GCCTAGCATTCCACAGAAGC+TGG | 0.451618 | 5_4:-10426582 | Msa0836780:three_prime_UTR |
| CTGACTAATTCTTCATCAAA+AGG | 0.458128 | 5_4:-10427116 | Msa0836780:CDS |
| AAGTGGGAAGACAGCACTGC+TGG | 0.459707 | 5_4:+10427049 | None:intergenic |
| GGGCTTCGGAAAAGAAGAAT+TGG | 0.464539 | 5_4:-10426949 | Msa0836780:CDS |
| TTTAATGCTCCCCACCCTCA+TGG | 0.465675 | 5_4:-10426754 | Msa0836780:three_prime_UTR |
| TGCAGGTTATACTCCAAAAG+TGG | 0.470804 | 5_4:+10427032 | None:intergenic |
| CTCTCATGTTTATTGAGAGC+AGG | 0.472683 | 5_4:+10431586 | None:intergenic |
| GGAAACCAGGTTGGCAAGTA+CGG | 0.476756 | 5_4:-10427158 | Msa0836780:CDS |
| TGGTTCTCCAAGCGAGTACC+AGG | 0.485969 | 5_4:-10429719 | Msa0836780:CDS |
| TCCATCAATCTTTGGAAACC+AGG | 0.486391 | 5_4:-10427171 | Msa0836780:CDS |
| TGAACACTGAATCAGCTTGA+GGG | 0.486583 | 5_4:+10432368 | None:intergenic |
| GACAACGAGCAACAGATAGA+TGG | 0.486712 | 5_4:+10427216 | None:intergenic |
| CTTATCAACGTGCCGATACA+AGG | 0.490367 | 5_4:-10427250 | Msa0836780:CDS |
| CTGCAAAATCTTCACCGGTA+TGG | 0.490474 | 5_4:-10427014 | Msa0836780:CDS |
| AAGGGGAAGAAATTAGTGAT+AGG | 0.492804 | 5_4:-10429531 | Msa0836780:CDS |
| TCCCTATCCTGGTACTCGCT+TGG | 0.496520 | 5_4:+10429712 | None:intergenic |
| ATTCACCGTACTTGCCAACC+TGG | 0.496792 | 5_4:+10427153 | None:intergenic |
| AATGGAGTTTGGACAGATGT+TGG | 0.497176 | 5_4:-10429604 | Msa0836780:CDS |
| CAACAAGAACCCTGAAGCAT+TGG | 0.497764 | 5_4:+10426777 | None:intergenic |
| CAGAGCAAAGCACCCGAGTA+GGG | 0.498811 | 5_4:+10426650 | None:intergenic |
| GAATTAACTGTTGTTTCCAA+TGG | 0.500431 | 5_4:-10426446 | Msa0836780:three_prime_UTR |
| GAAGTGAGGGAACATTTGTA+AGG | 0.500975 | 5_4:-10426820 | Msa0836780:three_prime_UTR |
| ACAGGCAGTAGATGCGGCGG+AGG | 0.501690 | 5_4:+10432833 | None:intergenic |
| ATTGTTAGGATGAGTTGATT+GGG | 0.502881 | 5_4:-10432402 | Msa0836780:intron |
| TTGACAATTATGGAATTGGA+AGG | 0.509591 | 5_4:-10429576 | Msa0836780:CDS |
| AAGAAGTTGTCGCAGAGCAC+AGG | 0.510460 | 5_4:+10432815 | None:intergenic |
| GGAACGTAATCTGGCAGCCA+TGG | 0.511067 | 5_4:+10427070 | None:intergenic |
| CTGAGGTTCAGAGGCTTGGG+TGG | 0.522798 | 5_4:+10429807 | None:intergenic |
| ATTGAACACTTGACAGTCCA+TGG | 0.523957 | 5_4:-10428849 | Msa0836780:CDS |
| TCAAATGTACCTGTTAAAGC+AGG | 0.526645 | 5_4:+10429014 | None:intergenic |
| TGAAGGACATAAGCTCAGGC+TGG | 0.528396 | 5_4:-10426489 | Msa0836780:three_prime_UTR |
| AGCACAGGCAGTAGATGCGG+CGG | 0.531138 | 5_4:+10432830 | None:intergenic |
| CTCGGCCTGCAAACTCGCGC+CGG | 0.533190 | 5_4:-10432862 | Msa0836780:five_prime_UTR |
| TGAGTTGATTGGGTTGGCCG+CGG | 0.533596 | 5_4:-10432392 | Msa0836780:CDS |
| GCTGAACAACGGCCTTGTAT+CGG | 0.535061 | 5_4:+10427238 | None:intergenic |
| CCACCTAGAACCAGCTTCTG+TGG | 0.536731 | 5_4:+10426572 | None:intergenic |
| ACGAAAATCAACCATGAGGG+TGG | 0.538082 | 5_4:+10426743 | None:intergenic |
| TAGATAATTTAATTACAAAG+AGG | 0.539106 | 5_4:-10432952 | None:intergenic |
| GTGAAAACGTCTGATGTTGC+GGG | 0.539190 | 5_4:+10430318 | None:intergenic |
| TTTAATTCATATAGACTTTG+GGG | 0.539516 | 5_4:+10429625 | None:intergenic |
| TTGAACACTGAATCAGCTTG+AGG | 0.539854 | 5_4:+10432367 | None:intergenic |
| TAATCTGGCAGCCATGGGAA+TGG | 0.540622 | 5_4:+10427076 | None:intergenic |
| CAATATCAATGACAATGTGT+TGG | 0.540879 | 5_4:-10426413 | Msa0836780:three_prime_UTR |
| GAAATTGTAACAATTCAAGT+TGG | 0.545120 | 5_4:-10432669 | Msa0836780:CDS |
| TGACGTCCATTCCATTCCCA+TGG | 0.546107 | 5_4:-10427087 | Msa0836780:CDS |
| ACAGAGCAAAGCACCCGAGT+AGG | 0.546325 | 5_4:+10426649 | None:intergenic |
| ACCAGCTTCTGTGGAATGCT+AGG | 0.546462 | 5_4:+10426581 | None:intergenic |
| GAAATGGCAAGGGAATAGGC+AGG | 0.548677 | 5_4:+10427192 | None:intergenic |
| GAATTACACGAGGAGCCGCT+GGG | 0.549048 | 5_4:-10426992 | Msa0836780:CDS |
| GAAAATCAACCATGAGGGTG+GGG | 0.550467 | 5_4:+10426745 | None:intergenic |
| TCAATCTTTGGAAACCAGGT+TGG | 0.552398 | 5_4:-10427167 | Msa0836780:CDS |
| CGAAAATCAACCATGAGGGT+GGG | 0.555427 | 5_4:+10426744 | None:intergenic |
| AGGCCGAGAAGCTTTGGCAA+CGG | 0.556337 | 5_4:+10432877 | None:intergenic |
| CGCGTGAGCTCATAGATCCA+AGG | 0.557446 | 5_4:+10430364 | None:intergenic |
| ATATTGATAATACAATCCAT+TGG | 0.557944 | 5_4:+10426430 | None:intergenic |
| TTGATGAAGAATTAGTCAGT+TGG | 0.566061 | 5_4:+10427120 | None:intergenic |
| ATGGATGTGCTTTATCGTAC+CGG | 0.566595 | 5_4:-10432328 | Msa0836780:CDS |
| TCTCAGTTATATCCCTATCC+TGG | 0.568673 | 5_4:+10429701 | None:intergenic |
| TCAGAAATCATTGGGGTCAA+CGG | 0.572224 | 5_4:+10428894 | None:intergenic |
| TCGTACCGGTCAGACACTAC+AGG | 0.572241 | 5_4:-10432314 | Msa0836780:intron |
| AAAGATTGATGGAAATGGCA+AGG | 0.572697 | 5_4:+10427181 | None:intergenic |
| TCCAAGCGAGTACCAGGATA+GGG | 0.573632 | 5_4:-10429713 | Msa0836780:CDS |
| TGACAATTATGGAATTGGAA+GGG | 0.574547 | 5_4:-10429575 | Msa0836780:CDS |
| TGGTTGAAGGACATAAGCTC+AGG | 0.574648 | 5_4:-10426493 | Msa0836780:three_prime_UTR |
| GAACGTAATCTGGCAGCCAT+GGG | 0.575562 | 5_4:+10427071 | None:intergenic |
| ATGTTTATTGAGAGCAGGCG+AGG | 0.575569 | 5_4:+10431591 | None:intergenic |
| TGGCAGCCATGGGAATGGAA+TGG | 0.577348 | 5_4:+10427081 | None:intergenic |
| GCAGTAGATGCGGCGGAGGG+CGG | 0.578505 | 5_4:+10432837 | None:intergenic |
| GCAGGTTATACTCCAAAAGT+GGG | 0.579709 | 5_4:+10427033 | None:intergenic |
| CTCCAAGCGAGTACCAGGAT+AGG | 0.580050 | 5_4:-10429714 | Msa0836780:CDS |
| TGTGAAAACGTCTGATGTTG+CGG | 0.582493 | 5_4:+10430317 | None:intergenic |
| TTAGGATGAGTTGATTGGGT+TGG | 0.585852 | 5_4:-10432398 | Msa0836780:intron |
| CAAGGTTAACCACACGGGCG+AGG | 0.587540 | 5_4:+10426604 | None:intergenic |
| ATAACCTGCAAAATCTTCAC+CGG | 0.588345 | 5_4:-10427019 | Msa0836780:CDS |
| TGTTAAAGCAGGTGTTGGCA+TGG | 0.588553 | 5_4:+10429025 | None:intergenic |
| TGGGAATGGAATGGACGTCA+AGG | 0.591641 | 5_4:+10427090 | None:intergenic |
| AAGCTTTGGCAACGGGTTAG+GGG | 0.591881 | 5_4:+10432885 | None:intergenic |
| TTGCACCTGTAGTGTCTGAC+CGG | 0.593939 | 5_4:+10432309 | None:intergenic |
| AGACCTATGTGCAGGACTGG+TGG | 0.595512 | 5_4:-10429835 | Msa0836780:intron |
| TCTGAATCAGATGACAACTC+AGG | 0.597072 | 5_4:+10426879 | None:intergenic |
| GTACCTGTTAAAGCAGGTGT+TGG | 0.597797 | 5_4:+10429020 | None:intergenic |
| AAGATTGATGGAAATGGCAA+GGG | 0.598402 | 5_4:+10427182 | None:intergenic |
| TGAATCAGCTTGAGGGTCCG+CGG | 0.599441 | 5_4:+10432375 | None:intergenic |
| CTTCGGAAAAGAAGAATTGG+TGG | 0.601565 | 5_4:-10426946 | Msa0836780:CDS |
| ACCCCAATGATTTCTGAGGA+TGG | 0.603403 | 5_4:-10428888 | Msa0836780:CDS |
| TGTCATAAGAATGACATTGG+TGG | 0.605161 | 5_4:-10426686 | Msa0836780:three_prime_UTR |
| TCTATGGAGCCTCGCCCGTG+TGG | 0.606085 | 5_4:-10426613 | Msa0836780:three_prime_UTR |
| AATGGCAAGGGAATAGGCAG+GGG | 0.606801 | 5_4:+10427194 | None:intergenic |
| CTCCTCGTGTAATTCCATAC+CGG | 0.610386 | 5_4:+10427000 | None:intergenic |
| CAGGCAGTAGATGCGGCGGA+GGG | 0.611668 | 5_4:+10432834 | None:intergenic |
| GGGAATGGAATGGACGTCAA+GGG | 0.611756 | 5_4:+10427091 | None:intergenic |
| GGTGATTATGCAAACTACGT+TGG | 0.614534 | 5_4:-10432648 | Msa0836780:CDS |
| GAAGGACATAAGCTCAGGCT+GGG | 0.614762 | 5_4:-10426488 | Msa0836780:three_prime_UTR |
| GCTGGGGCAGAGTTACTTAG+GGG | 0.615248 | 5_4:-10426975 | Msa0836780:CDS |
| CCTTCAACCAGCAAATGAAG+AGG | 0.619697 | 5_4:+10426506 | None:intergenic |
| CAAGAATCATGATCTTAACA+TGG | 0.620447 | 5_4:-10432347 | Msa0836780:CDS |
| CAGAGCACAGGCAGTAGATG+CGG | 0.621936 | 5_4:+10432827 | None:intergenic |
| AAATGTTATCAGGGCAAGGA+CGG | 0.625782 | 5_4:-10429076 | Msa0836780:intron |
| GCGTGAGCTCATAGATCCAA+GGG | 0.626550 | 5_4:+10430365 | None:intergenic |
| AGAGCAAAGCACCCGAGTAG+GGG | 0.627680 | 5_4:+10426651 | None:intergenic |
| AAGTGTCATAAGAATGACAT+TGG | 0.628209 | 5_4:-10426689 | Msa0836780:three_prime_UTR |
| GTTGACCCCAATGATTTCTG+AGG | 0.634230 | 5_4:-10428892 | Msa0836780:CDS |
| TACCTGATGCAAGAGCTCCA+TGG | 0.639571 | 5_4:+10428832 | None:intergenic |
| AAATGGCAAGGGAATAGGCA+GGG | 0.640149 | 5_4:+10427193 | None:intergenic |
| TTAATTCATATAGACTTTGG+GGG | 0.645461 | 5_4:+10429626 | None:intergenic |
| CTGCTCTCAATAAACATGAG+AGG | 0.651373 | 5_4:-10431585 | Msa0836780:intron |
| CCACAGAAGCTGGTTCTAGG+TGG | 0.651585 | 5_4:-10426572 | Msa0836780:three_prime_UTR |
| AAAACGAAAATCAACCATGA+GGG | 0.655756 | 5_4:+10426740 | None:intergenic |
| CACCGGTATGGAATTACACG+AGG | 0.661292 | 5_4:-10427002 | Msa0836780:CDS |
| CTTCTGTGGAATGCTAGGCA+AGG | 0.662968 | 5_4:+10426586 | None:intergenic |
| GAAAACGAAAATCAACCATG+AGG | 0.665081 | 5_4:+10426739 | None:intergenic |
| CTTGGATCTATGAGCTCACG+CGG | 0.672231 | 5_4:-10430363 | Msa0836780:CDS |
| GCTAGGCAAGGTTAACCACA+CGG | 0.677049 | 5_4:+10426598 | None:intergenic |
| CTAGGCAAGGTTAACCACAC+GGG | 0.683989 | 5_4:+10426599 | None:intergenic |
| ACAGATAGATGGCTGAACAA+CGG | 0.685058 | 5_4:+10427227 | None:intergenic |
| CGAGGCTCCATAGATCAGCA+GGG | 0.689206 | 5_4:+10426622 | None:intergenic |
| GAATCAGATGACAACTCAGG+AGG | 0.696881 | 5_4:+10426882 | None:intergenic |
| AATTACACGAGGAGCCGCTG+GGG | 0.699304 | 5_4:-10426991 | Msa0836780:CDS |
| CAACTCAGGAGGACACAATG+TGG | 0.702059 | 5_4:+10426893 | None:intergenic |
| ACGCGGTACACTGTATAAGG+AGG | 0.712382 | 5_4:-10430346 | Msa0836780:CDS |
| CCTAAGTAACTCTGCCCCAG+CGG | 0.713578 | 5_4:+10426977 | None:intergenic |
| ACCATCCTCAGAAATCATTG+GGG | 0.730270 | 5_4:+10428887 | None:intergenic |
| AATATGGTAAATGAGACGAG+TGG | 0.742862 | 5_4:-10429739 | Msa0836780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAGATAAAGAA+AGG | + | chr5_4:10426674-10426693 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGC+AGG | + | chr5_4:10428269-10428288 | None:intergenic | 10.0% |
| !! | NNNCATAGAAATAATTAATT+TGG | + | chr5_4:10430016-10430035 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr5_4:10431349-10431368 | Msa0836780:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr5_4:10431350-10431369 | Msa0836780:intron | 10.0% |
| !! | AAAAAAACATTATGAACAAT+TGG | + | chr5_4:10426765-10426784 | None:intergenic | 15.0% |
| !!! | TGTTTGTAATTTTTAATTCA+GGG | - | chr5_4:10427824-10427843 | Msa0836780:intron | 15.0% |
| !!! | ATTTTCTGTTTAAAAGAATA+AGG | + | chr5_4:10428060-10428079 | None:intergenic | 15.0% |
| !! | ATGCTACAAATTTATATATA+TGG | - | chr5_4:10428094-10428113 | Msa0836780:intron | 15.0% |
| !! | GATAAAAATCTTAAATATGT+GGG | + | chr5_4:10428569-10428588 | None:intergenic | 15.0% |
| !! | TGATAAAAATCTTAAATATG+TGG | + | chr5_4:10428570-10428589 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGAGATAAAAAC+TGG | + | chr5_4:10428680-10428699 | None:intergenic | 15.0% |
| !! | AGTATGCATAAAATTAAAAA+TGG | - | chr5_4:10429269-10429288 | Msa0836780:intron | 15.0% |
| !! | ATTTAATTCATATAGACTTT+GGG | + | chr5_4:10429632-10429651 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTAATACAGGAT+GGG | + | chr5_4:10430931-10430950 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTAATACAGGA+TGG | + | chr5_4:10430932-10430951 | None:intergenic | 15.0% |
| !! | GTTAATGTATGTTTAATTAA+AGG | - | chr5_4:10431172-10431191 | Msa0836780:intron | 15.0% |
| !! | TAAAATGCTTAATAATATGA+TGG | - | chr5_4:10431253-10431272 | Msa0836780:intron | 15.0% |
| !! | AAAATGCTTAATAATATGAT+GGG | - | chr5_4:10431254-10431273 | Msa0836780:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr5_4:10431351-10431370 | Msa0836780:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr5_4:10431414-10431433 | Msa0836780:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr5_4:10431415-10431434 | Msa0836780:intron | 15.0% |
| !!! | TTAAACTTTTCTTTTCGTTA+AGG | + | chr5_4:10426328-10426347 | None:intergenic | 20.0% |
| !! | ATTTCGAAATTTATCATTGA+AGG | + | chr5_4:10426480-10426499 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACTATTATTTCG+AGG | - | chr5_4:10426990-10427009 | Msa0836780:CDS | 20.0% |
| !!! | GTGTTTTGTTAGTAATTTTA+TGG | + | chr5_4:10427791-10427810 | None:intergenic | 20.0% |
| !!! | GTGTTTGTAATTTTTAATTC+AGG | - | chr5_4:10427823-10427842 | Msa0836780:intron | 20.0% |
| !! | CTACAAATTTATATATATGG+TGG | - | chr5_4:10428097-10428116 | Msa0836780:intron | 20.0% |
| !! | AAAAAAAAAAAGCAGGTAAT+TGG | + | chr5_4:10428262-10428281 | None:intergenic | 20.0% |
| !!! | ATTATTAGCTTGAAGAAAAT+TGG | - | chr5_4:10429107-10429126 | Msa0836780:intron | 20.0% |
| !! | TTTAATTCATATAGACTTTG+GGG | + | chr5_4:10429631-10429650 | None:intergenic | 20.0% |
| !! | CATTTAATTCATATAGACTT+TGG | + | chr5_4:10429633-10429652 | None:intergenic | 20.0% |
| !! | CAAAGTCTATATGAATTAAA+TGG | - | chr5_4:10429631-10429650 | Msa0836780:CDS | 20.0% |
| !! | TATATGAATTAAATGGAGTT+TGG | - | chr5_4:10429638-10429657 | Msa0836780:CDS | 20.0% |
| !!! | TTTTGATATAGTAGTTGATT+TGG | - | chr5_4:10429798-10429817 | Msa0836780:CDS | 20.0% |
| !!! | TTTGATATAGTAGTTGATTT+GGG | - | chr5_4:10429799-10429818 | Msa0836780:CDS | 20.0% |
| !!! | TTCTGTAAGTTTTCATTTTT+TGG | - | chr5_4:10429901-10429920 | Msa0836780:intron | 20.0% |
| !!! | TTCTTTTTTTCATTTTCTCA+AGG | - | chr5_4:10429934-10429953 | Msa0836780:intron | 20.0% |
| !!! | TCTTTTTTTCATTTTCTCAA+GGG | - | chr5_4:10429935-10429954 | Msa0836780:intron | 20.0% |
| !! | TGATAAGATATGTATTTGAT+TGG | - | chr5_4:10430279-10430298 | Msa0836780:intron | 20.0% |
| !! | GATTCAATGATAAGATATTA+TGG | + | chr5_4:10430633-10430652 | None:intergenic | 20.0% |
| !! | AAAGTAAATAGTAGATTCTT+TGG | - | chr5_4:10430706-10430725 | Msa0836780:intron | 20.0% |
| !!! | GATATCTGTAATTTTGTATT+TGG | - | chr5_4:10430785-10430804 | Msa0836780:intron | 20.0% |
| !!! | ATTTTTTTTAATACAGGATG+GGG | + | chr5_4:10430930-10430949 | None:intergenic | 20.0% |
| !!! | GATTTAGATTTAGATTTTAG+AGG | + | chr5_4:10430969-10430988 | None:intergenic | 20.0% |
| !!! | TTTTGACCTAAAATTTTTCT+TGG | - | chr5_4:10430999-10431018 | Msa0836780:intron | 20.0% |
| !!! | TTCATTTCTATTTGTTCTTT+TGG | + | chr5_4:10431105-10431124 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTGACAGAA+GGG | + | chr5_4:10431203-10431222 | None:intergenic | 20.0% |
| !! | TGTCAAAAAAAAGAAAAGAA+AGG | - | chr5_4:10431206-10431225 | Msa0836780:intron | 20.0% |
| !!! | TTTTATGATAGACAACAATT+TGG | + | chr5_4:10431238-10431257 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr5_4:10431374-10431393 | Msa0836780:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr5_4:10431447-10431466 | Msa0836780:intron | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | - | chr5_4:10431484-10431503 | Msa0836780:intron | 20.0% |
| !! | GCAATTAAAGAAAATAGTAT+AGG | - | chr5_4:10431609-10431628 | Msa0836780:CDS | 20.0% |
| !!! | AATGATTTGTCTTCATTATT+TGG | - | chr5_4:10431845-10431864 | Msa0836780:intron | 20.0% |
| !!! | ATATTGATAATACAATCCAT+TGG | + | chr5_4:10432826-10432845 | None:intergenic | 20.0% |
| ! | GAAATTGTAACAATTCAAGT+TGG | - | chr5_4:10426584-10426603 | Msa0836780:three_prime_UTR | 25.0% |
| ! | TTATTGTGTGTTGAATTGTT+AGG | - | chr5_4:10426837-10426856 | Msa0836780:three_prime_UTR | 25.0% |
| ! | TGGTTAATGAACTTTAGTTA+AGG | - | chr5_4:10427063-10427082 | Msa0836780:CDS | 25.0% |
| ! | TTAATGAACTTTAGTTAAGG+TGG | - | chr5_4:10427066-10427085 | Msa0836780:CDS | 25.0% |
| !! | AAAGTTTGCTTTAATGAACA+TGG | + | chr5_4:10427454-10427473 | None:intergenic | 25.0% |
| !!! | GTATCTTTTGTTAGTTCTTT+TGG | - | chr5_4:10427700-10427719 | Msa0836780:intron | 25.0% |
| !! | ATAGAGATACACATTTTTGT+TGG | - | chr5_4:10427965-10427984 | Msa0836780:intron | 25.0% |
| !!! | AGGGAAATAAATTTTGAGTA+GGG | + | chr5_4:10428124-10428143 | None:intergenic | 25.0% |
| !! | ATGACTTTTTACCAATACTT+CGG | + | chr5_4:10428180-10428199 | None:intergenic | 25.0% |
| ! | TCATAGTAATAGTATGTAGT+AGG | - | chr5_4:10428196-10428215 | Msa0836780:intron | 25.0% |
| ! | TATTTACTTCAACTCCATAA+AGG | + | chr5_4:10428621-10428640 | None:intergenic | 25.0% |
| ! | AAATACAACATCTTGCATAT+CGG | - | chr5_4:10428636-10428655 | Msa0836780:intron | 25.0% |
| ! | ATTTCTCTATTACAGTAATC+AGG | + | chr5_4:10429206-10429225 | None:intergenic | 25.0% |
| ! | AGTAAAAAGATACGACTAAA+CGG | + | chr5_4:10429316-10429335 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTCTTCTTCATAA+AGG | + | chr5_4:10429495-10429514 | None:intergenic | 25.0% |
| ! | TGAAGAAGAAAACCAAAATA+TGG | - | chr5_4:10429498-10429517 | Msa0836780:intron | 25.0% |
| ! | TTAATTCATATAGACTTTGG+GGG | + | chr5_4:10429630-10429649 | None:intergenic | 25.0% |
| !!! | GATTTTGACAATTATGGAAT+TGG | - | chr5_4:10429673-10429692 | Msa0836780:CDS | 25.0% |
| ! | AAAATTTAGTTACCTGTACA+TGG | + | chr5_4:10429774-10429793 | None:intergenic | 25.0% |
| !!! | TTGATATAGTAGTTGATTTG+GGG | - | chr5_4:10429800-10429819 | Msa0836780:CDS | 25.0% |
| ! | GACTTATACAAATGTTATCA+GGG | - | chr5_4:10430168-10430187 | Msa0836780:intron | 25.0% |
| !! | TGAAAGTTTTCTAACAAACA+CGG | + | chr5_4:10430338-10430357 | None:intergenic | 25.0% |
| !!! | TGTAATGGATATCATTTAGT+GGG | + | chr5_4:10430596-10430615 | None:intergenic | 25.0% |
| !!! | ATGTAATGGATATCATTTAG+TGG | + | chr5_4:10430597-10430616 | None:intergenic | 25.0% |
| ! | TATCCATTACATTGATCAAA+CGG | - | chr5_4:10430605-10430624 | Msa0836780:intron | 25.0% |
| ! | CTTTAAACCATTATGCATAT+TGG | + | chr5_4:10430690-10430709 | None:intergenic | 25.0% |
| ! | ATGGTCAAAACGATATATTT+AGG | - | chr5_4:10430763-10430782 | Msa0836780:intron | 25.0% |
| !!! | ATTTAGATTTTAGAGGTAAG+TGG | + | chr5_4:10430962-10430981 | None:intergenic | 25.0% |
| !! | GAAAGACCAAGAAAAATTTT+AGG | + | chr5_4:10431008-10431027 | None:intergenic | 25.0% |
| !!! | CTTTTCTTTTTTTTGACAGA+AGG | + | chr5_4:10431204-10431223 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | - | chr5_4:10431373-10431392 | Msa0836780:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | - | chr5_4:10431483-10431502 | Msa0836780:intron | 25.0% |
| ! | TTCTTCAGGCAAATTAAAAT+TGG | + | chr5_4:10431745-10431764 | None:intergenic | 25.0% |
| !!! | AATTTTAATTTGCCTGAAGA+AGG | - | chr5_4:10431744-10431763 | Msa0836780:intron | 25.0% |
| !!! | AAAAGTCCTTGGTATTTTTT+TGG | - | chr5_4:10432880-10432899 | Msa0836780:five_prime_UTR | 25.0% |
| !!! | AAAGTCCTTGGTATTTTTTT+GGG | - | chr5_4:10432881-10432900 | Msa0836780:five_prime_UTR | 25.0% |
| AGATAAAGAAAGGTAGAGAA+GGG | + | chr5_4:10426664-10426683 | None:intergenic | 30.0% | |
| AAGATAAAGAAAGGTAGAGA+AGG | + | chr5_4:10426665-10426684 | None:intergenic | 30.0% | |
| !! | AATTGTTAGGATGAGTTGAT+TGG | - | chr5_4:10426850-10426869 | Msa0836780:three_prime_UTR | 30.0% |
| !! | ATTGTTAGGATGAGTTGATT+GGG | - | chr5_4:10426851-10426870 | Msa0836780:three_prime_UTR | 30.0% |
| CAAGAATCATGATCTTAACA+TGG | - | chr5_4:10426906-10426925 | Msa0836780:CDS | 30.0% | |
| ATGTTATTAGAAGTCTCTTG+TGG | - | chr5_4:10427029-10427048 | Msa0836780:CDS | 30.0% | |
| ! | TTTGAGACAAAGATCAAACT+TGG | + | chr5_4:10427107-10427126 | None:intergenic | 30.0% |
| ATGGAATATGATCTTGTATG+TGG | - | chr5_4:10427231-10427250 | Msa0836780:CDS | 30.0% | |
| !! | CAACAATGTAAAGGTTTTAG+AGG | + | chr5_4:10427389-10427408 | None:intergenic | 30.0% |
| ACTTTAAGCATCAGTTACTT+AGG | - | chr5_4:10427469-10427488 | Msa0836780:intron | 30.0% | |
| TATCTTTCATAAATGTGTGC+AGG | - | chr5_4:10427622-10427641 | Msa0836780:intron | 30.0% | |
| ATCTTTCATAAATGTGTGCA+GGG | - | chr5_4:10427623-10427642 | Msa0836780:intron | 30.0% | |
| TTACTAACAAAACACACACT+TGG | - | chr5_4:10427796-10427815 | Msa0836780:intron | 30.0% | |
| !! | GGGAAATAAATTTTGAGTAG+GGG | + | chr5_4:10428123-10428142 | None:intergenic | 30.0% |
| !! | CAGGGAAATAAATTTTGAGT+AGG | + | chr5_4:10428125-10428144 | None:intergenic | 30.0% |
| ACTCAAAATTTATTTCCCTG+AGG | - | chr5_4:10428125-10428144 | Msa0836780:intron | 30.0% | |
| CTCAAAATTTATTTCCCTGA+GGG | - | chr5_4:10428126-10428145 | Msa0836780:intron | 30.0% | |
| ! | TGACTTTTTACCAATACTTC+GGG | + | chr5_4:10428179-10428198 | None:intergenic | 30.0% |
| !! | TGTTAAGTTGATGGGAAAAT+CGG | - | chr5_4:10428324-10428343 | Msa0836780:intron | 30.0% |
| ! | AATAAGTTGTCTTCTGCTTT+TGG | + | chr5_4:10428400-10428419 | None:intergenic | 30.0% |
| AATACAACATCTTGCATATC+GGG | - | chr5_4:10428637-10428656 | Msa0836780:intron | 30.0% | |
| GGAAAAATAGATTACAACGA+GGG | + | chr5_4:10428845-10428864 | None:intergenic | 30.0% | |
| TGGAAAAATAGATTACAACG+AGG | + | chr5_4:10428846-10428865 | None:intergenic | 30.0% | |
| ATAGAGTAGAAAAACTGTAG+AGG | - | chr5_4:10429014-10429033 | Msa0836780:intron | 30.0% | |
| CAATATTGAGACATCGTATA+AGG | - | chr5_4:10429152-10429171 | Msa0836780:intron | 30.0% | |
| ATCGTATAAGGTTAGTGAAT+AGG | - | chr5_4:10429164-10429183 | Msa0836780:intron | 30.0% | |
| ! | TAGTCGTATCTTTTTACTGT+TGG | - | chr5_4:10429318-10429337 | Msa0836780:intron | 30.0% |
| !!! | AGGAACAAGTTTTTTTTCTG+AGG | + | chr5_4:10429466-10429485 | None:intergenic | 30.0% |
| ! | TCGTCTCATTTACCATATTT+TGG | + | chr5_4:10429513-10429532 | None:intergenic | 30.0% |
| ATAACTGAGAGTCTAGAAAA+TGG | - | chr5_4:10429565-10429584 | Msa0836780:CDS | 30.0% | |
| ! | TAGAAAATGGAGTTCAGTTT+TGG | - | chr5_4:10429578-10429597 | Msa0836780:CDS | 30.0% |
| TTGACAATTATGGAATTGGA+AGG | - | chr5_4:10429677-10429696 | Msa0836780:CDS | 30.0% | |
| TGACAATTATGGAATTGGAA+GGG | - | chr5_4:10429678-10429697 | Msa0836780:CDS | 30.0% | |
| ! | CAAGGCATAAGCATATTTTT+AGG | + | chr5_4:10429962-10429981 | None:intergenic | 30.0% |
| TATGCTTATGCCTTGAATAT+AGG | - | chr5_4:10429967-10429986 | Msa0836780:intron | 30.0% | |
| AGCACTATTACCTATATTCA+AGG | + | chr5_4:10429980-10429999 | None:intergenic | 30.0% | |
| GGACTTATACAAATGTTATC+AGG | - | chr5_4:10430167-10430186 | Msa0836780:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr5_4:10431358-10431377 | Msa0836780:intron | 30.0% | |
| ! | TTGAAATGGCTCAGTTATTT+TGG | - | chr5_4:10431461-10431480 | Msa0836780:intron | 30.0% |
| !! | TGAAATGGCTCAGTTATTTT+GGG | - | chr5_4:10431462-10431481 | Msa0836780:intron | 30.0% |
| !! | TTGTTTCTGAAATACACAAC+AGG | - | chr5_4:10431576-10431595 | Msa0836780:intron | 30.0% |
| TATAAACATTCTGTGAGAGT+GGG | + | chr5_4:10431707-10431726 | None:intergenic | 30.0% | |
| TTATAAACATTCTGTGAGAG+TGG | + | chr5_4:10431708-10431727 | None:intergenic | 30.0% | |
| CACAGAATGTTTATAACCAA+CGG | - | chr5_4:10431712-10431731 | Msa0836780:intron | 30.0% | |
| TAAAATTGGAATCATTCCGT+TGG | + | chr5_4:10431731-10431750 | None:intergenic | 30.0% | |
| AAACAAAACTTGGGAACAAA+CGG | + | chr5_4:10431887-10431906 | None:intergenic | 30.0% | |
| TCATGCAGTAAACAAAACTT+GGG | + | chr5_4:10431896-10431915 | None:intergenic | 30.0% | |
| ATCATGCAGTAAACAAAACT+TGG | + | chr5_4:10431897-10431916 | None:intergenic | 30.0% | |
| TTTCCAAAGATTGATGGAAA+TGG | + | chr5_4:10432080-10432099 | None:intergenic | 30.0% | |
| TTGATGAAGAATTAGTCAGT+TGG | + | chr5_4:10432136-10432155 | None:intergenic | 30.0% | |
| CTGACTAATTCTTCATCAAA+AGG | - | chr5_4:10432137-10432156 | Msa0836780:intron | 30.0% | |
| TAGAATGCATACATTGTTCT+TGG | - | chr5_4:10432398-10432417 | Msa0836780:intron | 30.0% | |
| AAAACGAAAATCAACCATGA+GGG | + | chr5_4:10432516-10432535 | None:intergenic | 30.0% | |
| AAGTGTCATAAGAATGACAT+TGG | - | chr5_4:10432564-10432583 | Msa0836780:intron | 30.0% | |
| !!! | TTTTTTTTGTTTCCCCTACT+CGG | - | chr5_4:10432590-10432609 | Msa0836780:intron | 30.0% |
| !! | GAATTAACTGTTGTTTCCAA+TGG | - | chr5_4:10432807-10432826 | Msa0836780:five_prime_UTR | 30.0% |
| CAATATCAATGACAATGTGT+TGG | - | chr5_4:10432840-10432859 | Msa0836780:five_prime_UTR | 30.0% | |
| ! | TCTTTCTTTTACTGCAAAAC+CGG | + | chr5_4:10432915-10432934 | None:intergenic | 30.0% |
| CAACTTCTTTGCTTAGTCTA+AGG | - | chr5_4:10426452-10426471 | Msa0836780:three_prime_UTR | 35.0% | |
| GATAAAGAAAGGTAGAGAAG+GGG | + | chr5_4:10426663-10426682 | None:intergenic | 35.0% | |
| TAAAGTTCATTAACCACTCG+AGG | + | chr5_4:10427059-10427078 | None:intergenic | 35.0% | |
| TTAGTTAAGGTGGAACTATC+AGG | - | chr5_4:10427076-10427095 | Msa0836780:CDS | 35.0% | |
| CTTAAACCTCCTGTTCATAT+GGG | + | chr5_4:10427184-10427203 | None:intergenic | 35.0% | |
| ! | AGGCCAAAAGAAAAGTCTTT+TGG | - | chr5_4:10427202-10427221 | Msa0836780:CDS | 35.0% |
| ! | GCACCAAAAGACTTTTCTTT+TGG | + | chr5_4:10427208-10427227 | None:intergenic | 35.0% |
| !! | AAAAGTCTTTTGGTGCAAGA+TGG | - | chr5_4:10427212-10427231 | Msa0836780:CDS | 35.0% |
| !! | TTGCTTATGGTTCTAGATTG+AGG | - | chr5_4:10427272-10427291 | Msa0836780:CDS | 35.0% |
| !! | CTTGTTATTGCGGAAAAGTA+TGG | - | chr5_4:10427313-10427332 | Msa0836780:intron | 35.0% |
| GATCTGCATCAACAATGTAA+AGG | + | chr5_4:10427398-10427417 | None:intergenic | 35.0% | |
| GAATGTAATACTATCCCTCA+GGG | + | chr5_4:10428143-10428162 | None:intergenic | 35.0% | |
| AGAATGTAATACTATCCCTC+AGG | + | chr5_4:10428144-10428163 | None:intergenic | 35.0% | |
| TTGTGGAGATAGAAATCAGA+TGG | - | chr5_4:10428298-10428317 | Msa0836780:intron | 35.0% | |
| TGTGGAGATAGAAATCAGAT+GGG | - | chr5_4:10428299-10428318 | Msa0836780:intron | 35.0% | |
| !! | AGATGGGTTTGTTAAGTTGA+TGG | - | chr5_4:10428315-10428334 | Msa0836780:intron | 35.0% |
| !! | GATGGGTTTGTTAAGTTGAT+GGG | - | chr5_4:10428316-10428335 | Msa0836780:intron | 35.0% |
| TCGGAAACAATCTAAACAAG+AGG | - | chr5_4:10428343-10428362 | Msa0836780:intron | 35.0% | |
| AACAATCTAAACAAGAGGAC+TGG | - | chr5_4:10428348-10428367 | Msa0836780:intron | 35.0% | |
| CAACTCCATAAAGGTAGAAA+AGG | + | chr5_4:10428612-10428631 | None:intergenic | 35.0% | |
| ATAAAAACTGGCATCCGAAA+AGG | + | chr5_4:10428668-10428687 | None:intergenic | 35.0% | |
| CAGAACAAATGGAAATTGCA+AGG | + | chr5_4:10428703-10428722 | None:intergenic | 35.0% | |
| ATTCGCACTTGAAAGGAAAA+CGG | + | chr5_4:10428804-10428823 | None:intergenic | 35.0% | |
| AAATAGATTACAACGAGGGA+AGG | + | chr5_4:10428841-10428860 | None:intergenic | 35.0% | |
| CCTGAAAAGGTTAACAGATT+TGG | + | chr5_4:10428866-10428885 | None:intergenic | 35.0% | |
| ! | CCAAATCTGTTAACCTTTTC+AGG | - | chr5_4:10428863-10428882 | Msa0836780:CDS | 35.0% |
| AGAAAAACTGTAGAGGATTG+AGG | - | chr5_4:10429021-10429040 | Msa0836780:intron | 35.0% | |
| !!! | GTTTTTTTTCTGAGGTTCAG+AGG | + | chr5_4:10429458-10429477 | None:intergenic | 35.0% |
| ! | CTTCTTCATAAAGGCTTTGT+AGG | + | chr5_4:10429486-10429505 | None:intergenic | 35.0% |
| AATATGGTAAATGAGACGAG+TGG | - | chr5_4:10429514-10429533 | Msa0836780:CDS | 35.0% | |
| !! | GTTGGCGATTTTGACAATTA+TGG | - | chr5_4:10429667-10429686 | Msa0836780:CDS | 35.0% |
| AAGGGGAAGAAATTAGTGAT+AGG | - | chr5_4:10429722-10429741 | Msa0836780:CDS | 35.0% | |
| TGTTTCATTACAAGAGTGAC+AGG | + | chr5_4:10429847-10429866 | None:intergenic | 35.0% | |
| ! | GTGCAATATCTTAAAGCATC+TGG | - | chr5_4:10429875-10429894 | Msa0836780:intron | 35.0% |
| ATACAAATGTTATCAGGGCA+AGG | - | chr5_4:10430173-10430192 | Msa0836780:intron | 35.0% | |
| TCAAATGTACCTGTTAAAGC+AGG | + | chr5_4:10430242-10430261 | None:intergenic | 35.0% | |
| GTTTAGAAAGACAAGACAAG+AGG | + | chr5_4:10430499-10430518 | None:intergenic | 35.0% | |
| TGGTGTGCTTATTAGATACA+GGG | + | chr5_4:10430552-10430571 | None:intergenic | 35.0% | |
| TTGGTGTGCTTATTAGATAC+AGG | + | chr5_4:10430553-10430572 | None:intergenic | 35.0% | |
| TAGTGGGAAAATGCTTTGAT+CGG | + | chr5_4:10430580-10430599 | None:intergenic | 35.0% | |
| CCATTATGCATATTGGATAC+AGG | + | chr5_4:10430683-10430702 | None:intergenic | 35.0% | |
| CCTGTATCCAATATGCATAA+TGG | - | chr5_4:10430680-10430699 | Msa0836780:intron | 35.0% | |
| !! | GTTTTGACCATGATCTTACT+CGG | + | chr5_4:10430754-10430773 | None:intergenic | 35.0% |
| TACAAATGTACCAGTTAGTG+GGG | + | chr5_4:10431069-10431088 | None:intergenic | 35.0% | |
| CTACAAATGTACCAGTTAGT+GGG | + | chr5_4:10431070-10431089 | None:intergenic | 35.0% | |
| TCTACAAATGTACCAGTTAG+TGG | + | chr5_4:10431071-10431090 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | chr5_4:10431329-10431348 | None:intergenic | 35.0% | |
| AGTAAATGGGTCAGATATTC+CGG | - | chr5_4:10431497-10431516 | Msa0836780:intron | 35.0% | |
| AATATTCAGTCCTGTATGAC+AGG | - | chr5_4:10431541-10431560 | Msa0836780:intron | 35.0% | |
| ATATTCAGTCCTGTATGACA+GGG | - | chr5_4:10431542-10431561 | Msa0836780:intron | 35.0% | |
| ! | TCTGAAATACACAACAGGAA+AGG | - | chr5_4:10431581-10431600 | Msa0836780:intron | 35.0% |
| ATAAACATTCTGTGAGAGTG+GGG | + | chr5_4:10431706-10431725 | None:intergenic | 35.0% | |
| CTACTGAACAAAAACAGCAA+AGG | + | chr5_4:10431935-10431954 | None:intergenic | 35.0% | |
| !!! | TGCTGTTTTTGTTCAGTAGA+AGG | - | chr5_4:10431936-10431955 | Msa0836780:intron | 35.0% |
| AAGATTGATGGAAATGGCAA+GGG | + | chr5_4:10432074-10432093 | None:intergenic | 35.0% | |
| AAAGATTGATGGAAATGGCA+AGG | + | chr5_4:10432075-10432094 | None:intergenic | 35.0% | |
| ! | TTGCCATTTCCATCAATCTT+TGG | - | chr5_4:10432074-10432093 | Msa0836780:intron | 35.0% |
| ATAACCTGCAAAATCTTCAC+CGG | - | chr5_4:10432234-10432253 | Msa0836780:intron | 35.0% | |
| GTTCCAAAAACAAGAAGTGA+GGG | - | chr5_4:10432420-10432439 | Msa0836780:intron | 35.0% | |
| ACAAATTTGACCAATGCTTC+AGG | - | chr5_4:10432466-10432485 | Msa0836780:intron | 35.0% | |
| CAAATTTGACCAATGCTTCA+GGG | - | chr5_4:10432467-10432486 | Msa0836780:intron | 35.0% | |
| GAAAACGAAAATCAACCATG+AGG | + | chr5_4:10432517-10432536 | None:intergenic | 35.0% | |
| TGTCATAAGAATGACATTGG+TGG | - | chr5_4:10432567-10432586 | Msa0836780:intron | 35.0% | |
| !!! | TTTTTTTGTTTCCCCTACTC+GGG | - | chr5_4:10432591-10432610 | Msa0836780:intron | 35.0% |
| !!! | CTCGTATAAGTTTTGTTGAG+AGG | + | chr5_4:10432727-10432746 | None:intergenic | 35.0% |
| !! | GTTTTCAAGAGAAAAGTCCT+TGG | - | chr5_4:10432869-10432888 | Msa0836780:five_prime_UTR | 35.0% |
| AGAGACCCAAAAAAATACCA+AGG | + | chr5_4:10432889-10432908 | None:intergenic | 35.0% | |
| ! | CTTTCTTTTACTGCAAAACC+GGG | + | chr5_4:10432914-10432933 | None:intergenic | 35.0% |
| GGTGATTATGCAAACTACGT+TGG | - | chr5_4:10426605-10426624 | Msa0836780:three_prime_UTR | 40.0% | |
| !! | TTAGGATGAGTTGATTGGGT+TGG | - | chr5_4:10426855-10426874 | Msa0836780:three_prime_UTR | 40.0% |
| TGAACACTGAATCAGCTTGA+GGG | + | chr5_4:10426888-10426907 | None:intergenic | 40.0% | |
| TTGAACACTGAATCAGCTTG+AGG | + | chr5_4:10426889-10426908 | None:intergenic | 40.0% | |
| ATGGATGTGCTTTATCGTAC+CGG | - | chr5_4:10426925-10426944 | Msa0836780:CDS | 40.0% | |
| TCCTGTTCATATGGGATAGT+GGG | + | chr5_4:10427176-10427195 | None:intergenic | 40.0% | |
| CCTTAAACCTCCTGTTCATA+TGG | + | chr5_4:10427185-10427204 | None:intergenic | 40.0% | |
| CCATATGAACAGGAGGTTTA+AGG | - | chr5_4:10427182-10427201 | Msa0836780:CDS | 40.0% | |
| !! | TGTATGTGGCCTTATCTAGT+TGG | - | chr5_4:10427245-10427264 | Msa0836780:CDS | 40.0% |
| AGCAACAGACCAACTAGATA+AGG | + | chr5_4:10427257-10427276 | None:intergenic | 40.0% | |
| ! | TCTAGTTGGTCTGTTGCTTA+TGG | - | chr5_4:10427259-10427278 | Msa0836780:CDS | 40.0% |
| !! | GCGCATTGAACTTGTTATTG+CGG | - | chr5_4:10427303-10427322 | Msa0836780:CDS | 40.0% |
| ATGAACATGGACATGACACA+TGG | + | chr5_4:10427441-10427460 | None:intergenic | 40.0% | |
| CTCTCATGTTTATTGAGAGC+AGG | + | chr5_4:10427670-10427689 | None:intergenic | 40.0% | |
| CTGCTCTCAATAAACATGAG+AGG | - | chr5_4:10427668-10427687 | Msa0836780:intron | 40.0% | |
| AATACTTCGGGTGTTAGTTC+AGG | + | chr5_4:10428167-10428186 | None:intergenic | 40.0% | |
| TGAACTAACACCCGAAGTAT+TGG | - | chr5_4:10428166-10428185 | Msa0836780:intron | 40.0% | |
| AACCTTTGAACCAGCGAAAT+AGG | + | chr5_4:10428223-10428242 | None:intergenic | 40.0% | |
| TCATGTCAAAAGCAAACGTC+AGG | + | chr5_4:10428544-10428563 | None:intergenic | 40.0% | |
| ! | GCTTGCCTTTTCTACCTTTA+TGG | - | chr5_4:10428604-10428623 | Msa0836780:intron | 40.0% |
| TCAGCAGAAGACAGAACAAA+TGG | + | chr5_4:10428714-10428733 | None:intergenic | 40.0% | |
| GAGTGATATTCGCACTTGAA+AGG | + | chr5_4:10428811-10428830 | None:intergenic | 40.0% | |
| !! | TTAACCTTTTCAGGATCCCT+TGG | - | chr5_4:10428872-10428891 | Msa0836780:CDS | 40.0% |
| TGTGAAAACGTCTGATGTTG+CGG | + | chr5_4:10428939-10428958 | None:intergenic | 40.0% | |
| ! | CAACATCAGACGTTTTCACA+TGG | - | chr5_4:10428939-10428958 | Msa0836780:intron | 40.0% |
| AAACTGTAGAGGATTGAGGA+AGG | - | chr5_4:10429025-10429044 | Msa0836780:CDS | 40.0% | |
| CTCTAACGTTGACATTCTTG+TGG | - | chr5_4:10429050-10429069 | Msa0836780:CDS | 40.0% | |
| AGAGACTATGAAGACATAGC+TGG | + | chr5_4:10429361-10429380 | None:intergenic | 40.0% | |
| GCTATGTCTTCATAGTCTCT+TGG | - | chr5_4:10429361-10429380 | Msa0836780:intron | 40.0% | |
| TCTCAGTTATATCCCTATCC+TGG | + | chr5_4:10429555-10429574 | None:intergenic | 40.0% | |
| ! | ATTCATATAGACTTTGGGGG+TGG | + | chr5_4:10429627-10429646 | None:intergenic | 40.0% |
| AATGGAGTTTGGACAGATGT+TGG | - | chr5_4:10429649-10429668 | Msa0836780:CDS | 40.0% | |
| ! | TTGGAAGGGATTCTTTTGCA+TGG | - | chr5_4:10429692-10429711 | Msa0836780:CDS | 40.0% |
| ! | TGGAAGGGATTCTTTTGCAT+GGG | - | chr5_4:10429693-10429712 | Msa0836780:CDS | 40.0% |
| TGAAGAATGTGACCATGTAC+AGG | - | chr5_4:10429759-10429778 | Msa0836780:CDS | 40.0% | |
| AAATGTTATCAGGGCAAGGA+CGG | - | chr5_4:10430177-10430196 | Msa0836780:intron | 40.0% | |
| ! | GCAGAATATGGTGTCAATTC+TGG | - | chr5_4:10430199-10430218 | Msa0836780:intron | 40.0% |
| TCAGAAATCATTGGGGTCAA+CGG | + | chr5_4:10430362-10430381 | None:intergenic | 40.0% | |
| ACCATCCTCAGAAATCATTG+GGG | + | chr5_4:10430369-10430388 | None:intergenic | 40.0% | |
| CACCATCCTCAGAAATCATT+GGG | + | chr5_4:10430370-10430389 | None:intergenic | 40.0% | |
| TCACCATCCTCAGAAATCAT+TGG | + | chr5_4:10430371-10430390 | None:intergenic | 40.0% | |
| ATTGAACACTTGACAGTCCA+TGG | - | chr5_4:10430404-10430423 | Msa0836780:intron | 40.0% | |
| GACAAGACAAGAGGATACAA+GGG | + | chr5_4:10430490-10430509 | None:intergenic | 40.0% | |
| AGACAAGACAAGAGGATACA+AGG | + | chr5_4:10430491-10430510 | None:intergenic | 40.0% | |
| ACAGGGTAAGATCATTGAAG+TGG | + | chr5_4:10430535-10430554 | None:intergenic | 40.0% | |
| AAATGCTTTGATCGGTTGGT+TGG | + | chr5_4:10430572-10430591 | None:intergenic | 40.0% | |
| !! | GTGCCGTTTGATCAATGTAA+TGG | + | chr5_4:10430611-10430630 | None:intergenic | 40.0% |
| TACTGTTCCGAGTAAGATCA+TGG | - | chr5_4:10430744-10430763 | Msa0836780:intron | 40.0% | |
| CAACCATGTCTTATCTCACT+AGG | - | chr5_4:10430870-10430889 | Msa0836780:intron | 40.0% | |
| TCACCTAGTGAGATAAGACA+TGG | + | chr5_4:10430876-10430895 | None:intergenic | 40.0% | |
| CTTATCTCACTAGGTGAGTT+CGG | - | chr5_4:10430879-10430898 | Msa0836780:intron | 40.0% | |
| ! | GTACATTTTACCTCACTGTC+TGG | + | chr5_4:10431282-10431301 | None:intergenic | 40.0% |
| GTAAATGGGTCAGATATTCC+GGG | - | chr5_4:10431498-10431517 | Msa0836780:intron | 40.0% | |
| ! | GGAGTTAATTTGGACTTCCA+GGG | + | chr5_4:10431665-10431684 | None:intergenic | 40.0% |
| ! | TGGAGTTAATTTGGACTTCC+AGG | + | chr5_4:10431666-10431685 | None:intergenic | 40.0% |
| ! | AGGGTAGGTTGGAGTTAATT+TGG | + | chr5_4:10431675-10431694 | None:intergenic | 40.0% |
| TAAACATTCTGTGAGAGTGG+GGG | + | chr5_4:10431705-10431724 | None:intergenic | 40.0% | |
| ACAAGTTTAGCACCTTCTTC+AGG | + | chr5_4:10431759-10431778 | None:intergenic | 40.0% | |
| CACTTCACACATTCAAGCTT+GGG | + | chr5_4:10431808-10431827 | None:intergenic | 40.0% | |
| ACAGATAGATGGCTGAACAA+CGG | + | chr5_4:10432029-10432048 | None:intergenic | 40.0% | |
| ! | TCCATCAATCTTTGGAAACC+AGG | - | chr5_4:10432082-10432101 | Msa0836780:intron | 40.0% |
| ACCTGGTTTCCAAAGATTGA+TGG | + | chr5_4:10432086-10432105 | None:intergenic | 40.0% | |
| ! | TCAATCTTTGGAAACCAGGT+TGG | - | chr5_4:10432086-10432105 | Msa0836780:intron | 40.0% |
| GCAGGTTATACTCCAAAAGT+GGG | + | chr5_4:10432223-10432242 | None:intergenic | 40.0% | |
| TGCAGGTTATACTCCAAAAG+TGG | + | chr5_4:10432224-10432243 | None:intergenic | 40.0% | |
| CTTCGGAAAAGAAGAATTGG+TGG | - | chr5_4:10432307-10432326 | Msa0836780:intron | 40.0% | |
| AGAAGAATTGGTGGAAATGC+AGG | - | chr5_4:10432316-10432335 | Msa0836780:CDS | 40.0% | |
| GCAGGAGATGTTGTCTAAAA+TGG | - | chr5_4:10432334-10432353 | Msa0836780:CDS | 40.0% | |
| TCTGAATCAGATGACAACTC+AGG | + | chr5_4:10432377-10432396 | None:intergenic | 40.0% | |
| GGTTCCAAAAACAAGAAGTG+AGG | - | chr5_4:10432419-10432438 | Msa0836780:intron | 40.0% | |
| !!! | GTTCCCTCACTTCTTGTTTT+TGG | + | chr5_4:10432426-10432445 | None:intergenic | 40.0% |
| GAAGTGAGGGAACATTTGTA+AGG | - | chr5_4:10432433-10432452 | Msa0836780:intron | 40.0% | |
| !!! | ATTTTTTTGGGTCTCTGACC+CGG | - | chr5_4:10432893-10432912 | Msa0836780:five_prime_UTR | 40.0% |
| !! | CTCTCACTTCTGGAACTTTC+AGG | - | chr5_4:10426628-10426647 | Msa0836780:three_prime_UTR | 45.0% |
| ATTTCCGAGACGAACTCCAT+AGG | - | chr5_4:10427150-10427169 | Msa0836780:CDS | 45.0% | |
| CTCCTGTTCATATGGGATAG+TGG | + | chr5_4:10427177-10427196 | None:intergenic | 45.0% | |
| CACTATCCCATATGAACAGG+AGG | - | chr5_4:10427175-10427194 | Msa0836780:CDS | 45.0% | |
| !!! | GGTTTTAGAGGTCTCCACAA+CGG | + | chr5_4:10427377-10427396 | None:intergenic | 45.0% |
| ATGTTTATTGAGAGCAGGCG+AGG | + | chr5_4:10427665-10427684 | None:intergenic | 45.0% | |
| TGTAGTAGGACCTATTTCGC+TGG | - | chr5_4:10428210-10428229 | Msa0836780:intron | 45.0% | |
| !! | GACCTATTTCGCTGGTTCAA+AGG | - | chr5_4:10428218-10428237 | Msa0836780:intron | 45.0% |
| ! | CATATCGGGTGTCTCCTTTT+CGG | - | chr5_4:10428651-10428670 | Msa0836780:intron | 45.0% |
| AGATCCAAGGGATCCTGAAA+AGG | + | chr5_4:10428879-10428898 | None:intergenic | 45.0% | |
| GTGAAAACGTCTGATGTTGC+GGG | + | chr5_4:10428938-10428957 | None:intergenic | 45.0% | |
| ! | GACTAAACGGATTCTGCAAG+TGG | + | chr5_4:10429303-10429322 | None:intergenic | 45.0% |
| GAAGACATAGCTGGTGAAGT+AGG | + | chr5_4:10429352-10429371 | None:intergenic | 45.0% | |
| ATGTCCATAGACCTATGTGC+AGG | - | chr5_4:10429410-10429429 | Msa0836780:intron | 45.0% | |
| !! | TTTCTGAGGTTCAGAGGCTT+GGG | + | chr5_4:10429452-10429471 | None:intergenic | 45.0% |
| !!! | TTTTCTGAGGTTCAGAGGCT+TGG | + | chr5_4:10429453-10429472 | None:intergenic | 45.0% |
| ! | TCTTTTGCATGGGCTTCACA+AGG | - | chr5_4:10429703-10429722 | Msa0836780:CDS | 45.0% |
| ! | CTTTTGCATGGGCTTCACAA+GGG | - | chr5_4:10429704-10429723 | Msa0836780:CDS | 45.0% |
| ! | TTTTGCATGGGCTTCACAAG+GGG | - | chr5_4:10429705-10429724 | Msa0836780:CDS | 45.0% |
| !! | TGTTAAAGCAGGTGTTGGCA+TGG | + | chr5_4:10430231-10430250 | None:intergenic | 45.0% |
| ATGCCAACACCTGCTTTAAC+AGG | - | chr5_4:10430230-10430249 | Msa0836780:intron | 45.0% | |
| GTACCTGTTAAAGCAGGTGT+TGG | + | chr5_4:10430236-10430255 | None:intergenic | 45.0% | |
| GTTGACCCCAATGATTTCTG+AGG | - | chr5_4:10430361-10430380 | Msa0836780:CDS | 45.0% | |
| ! | ACCCCAATGATTTCTGAGGA+TGG | - | chr5_4:10430365-10430384 | Msa0836780:CDS | 45.0% |
| TGAGGATGGTGAAGACTTAC+AGG | - | chr5_4:10430379-10430398 | Msa0836780:intron | 45.0% | |
| GGGAAAATGCTTTGATCGGT+TGG | + | chr5_4:10430576-10430595 | None:intergenic | 45.0% | |
| TAGTGGGGTTGACAAGATGA+AGG | + | chr5_4:10431054-10431073 | None:intergenic | 45.0% | |
| ATCTTGTCAACCCCACTAAC+TGG | - | chr5_4:10431056-10431075 | Msa0836780:intron | 45.0% | |
| ! | CAAACTGGCTCAGATATTCC+GGG | + | chr5_4:10431314-10431333 | None:intergenic | 45.0% |
| ! | CCAAACTGGCTCAGATATTC+CGG | + | chr5_4:10431315-10431334 | None:intergenic | 45.0% |
| ATTTGGACTTCCAGGGAGTA+GGG | + | chr5_4:10431658-10431677 | None:intergenic | 45.0% | |
| AATTTGGACTTCCAGGGAGT+AGG | + | chr5_4:10431659-10431678 | None:intergenic | 45.0% | |
| CCACTTCACACATTCAAGCT+TGG | + | chr5_4:10431809-10431828 | None:intergenic | 45.0% | |
| CCAAGCTTGAATGTGTGAAG+TGG | - | chr5_4:10431806-10431825 | Msa0836780:intron | 45.0% | |
| GAATGTGTGAAGTGGTCTGT+TGG | - | chr5_4:10431814-10431833 | Msa0836780:intron | 45.0% | |
| ! | CTTATCAACGTGCCGATACA+AGG | - | chr5_4:10432003-10432022 | Msa0836780:intron | 45.0% |
| GACAACGAGCAACAGATAGA+TGG | + | chr5_4:10432040-10432059 | None:intergenic | 45.0% | |
| AAATGGCAAGGGAATAGGCA+GGG | + | chr5_4:10432063-10432082 | None:intergenic | 45.0% | |
| GATGGAAATGGCAAGGGAAT+AGG | + | chr5_4:10432068-10432087 | None:intergenic | 45.0% | |
| ! | CATACCGGTGAAGATTTTGC+AGG | + | chr5_4:10432241-10432260 | None:intergenic | 45.0% |
| CTGCAAAATCTTCACCGGTA+TGG | - | chr5_4:10432239-10432258 | Msa0836780:intron | 45.0% | |
| CTCCTCGTGTAATTCCATAC+CGG | + | chr5_4:10432256-10432275 | None:intergenic | 45.0% | |
| GGGCTTCGGAAAAGAAGAAT+TGG | - | chr5_4:10432304-10432323 | Msa0836780:intron | 45.0% | |
| GAATCAGATGACAACTCAGG+AGG | + | chr5_4:10432374-10432393 | None:intergenic | 45.0% | |
| CAACAAGAACCCTGAAGCAT+TGG | + | chr5_4:10432479-10432498 | None:intergenic | 45.0% | |
| GAAAATCAACCATGAGGGTG+GGG | + | chr5_4:10432511-10432530 | None:intergenic | 45.0% | |
| CGAAAATCAACCATGAGGGT+GGG | + | chr5_4:10432512-10432531 | None:intergenic | 45.0% | |
| ACGAAAATCAACCATGAGGG+TGG | + | chr5_4:10432513-10432532 | None:intergenic | 45.0% | |
| ! | ATTCCACAGAAGCTGGTTCT+AGG | - | chr5_4:10432678-10432697 | Msa0836780:CDS | 45.0% |
| ATACGAGCCTCTTCATTTGC+TGG | - | chr5_4:10432740-10432759 | Msa0836780:intron | 45.0% | |
| CCTTCAACCAGCAAATGAAG+AGG | + | chr5_4:10432750-10432769 | None:intergenic | 45.0% | |
| ! | CCTCTTCATTTGCTGGTTGA+AGG | - | chr5_4:10432747-10432766 | Msa0836780:intron | 45.0% |
| TGGTTGAAGGACATAAGCTC+AGG | - | chr5_4:10432760-10432779 | Msa0836780:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr5_4:10428281-10428300 | Msa0836780:intron | 5.0% |
| !!! | ACTATTTATTTATTTTTTTA+CGG | + | chr5_4:10428483-10428502 | None:intergenic | 5.0% |
| !!! | ATTTTTATTTTTTTTAATAC+AGG | + | chr5_4:10430936-10430955 | None:intergenic | 5.0% |
| !! | AAGCTTTGGCAACGGGTTAG+GGG | + | chr5_4:10426371-10426390 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGCAACGGGTTA+GGG | + | chr5_4:10426372-10426391 | None:intergenic | 50.0% |
| ! | AGAAGCTTTGGCAACGGGTT+AGG | + | chr5_4:10426373-10426392 | None:intergenic | 50.0% |
| AACCCGTTGCCAAAGCTTCT+CGG | - | chr5_4:10426373-10426392 | Msa0836780:three_prime_UTR | 50.0% | |
| AAGAAGTTGTCGCAGAGCAC+AGG | + | chr5_4:10426441-10426460 | None:intergenic | 50.0% | |
| !! | ACTACGTTGGCTCTCACTTC+TGG | - | chr5_4:10426618-10426637 | Msa0836780:three_prime_UTR | 50.0% |
| TTGCACCTGTAGTGTCTGAC+CGG | + | chr5_4:10426947-10426966 | None:intergenic | 50.0% | |
| !! | CATATGGGATAGTGGGCCTA+TGG | + | chr5_4:10427169-10427188 | None:intergenic | 50.0% |
| GCCCACTATCCCATATGAAC+AGG | - | chr5_4:10427172-10427191 | Msa0836780:CDS | 50.0% | |
| AGTCGATACACCCACAATCG+AGG | - | chr5_4:10427344-10427363 | Msa0836780:intron | 50.0% | |
| TACAACGAGGGAAGGACTGA+AGG | + | chr5_4:10428833-10428852 | None:intergenic | 50.0% | |
| GCGTGAGCTCATAGATCCAA+GGG | + | chr5_4:10428891-10428910 | None:intergenic | 50.0% | |
| CTTGGATCTATGAGCTCACG+CGG | - | chr5_4:10428890-10428909 | Msa0836780:CDS | 50.0% | |
| CTCACGCGGTACACTGTATA+AGG | - | chr5_4:10428904-10428923 | Msa0836780:CDS | 50.0% | |
| ACGCGGTACACTGTATAAGG+AGG | - | chr5_4:10428907-10428926 | Msa0836780:CDS | 50.0% | |
| CAGTCCTGCACATAGGTCTA+TGG | + | chr5_4:10429417-10429436 | None:intergenic | 50.0% | |
| CATAGACCTATGTGCAGGAC+TGG | - | chr5_4:10429415-10429434 | Msa0836780:intron | 50.0% | |
| TCCAAGCGAGTACCAGGATA+GGG | - | chr5_4:10429540-10429559 | Msa0836780:CDS | 50.0% | |
| TCCATGAAAATCCACAGCCC+CGG | + | chr5_4:10430150-10430169 | None:intergenic | 50.0% | |
| TACCTGATGCAAGAGCTCCA+TGG | + | chr5_4:10430424-10430443 | None:intergenic | 50.0% | |
| TTGGCCAGTCTGTGAATCAC+TGG | - | chr5_4:10430804-10430823 | Msa0836780:intron | 50.0% | |
| ACCTCCAGTGATTCACAGAC+TGG | + | chr5_4:10430811-10430830 | None:intergenic | 50.0% | |
| ACTAGGTGAGTTCGGCTACA+TGG | - | chr5_4:10430887-10430906 | Msa0836780:intron | 50.0% | |
| !! | ATGATGGGTACCAGACAGTG+AGG | - | chr5_4:10431269-10431288 | Msa0836780:intron | 50.0% |
| AAAATGTACTCCCTCCGTCC+CGG | - | chr5_4:10431293-10431312 | Msa0836780:intron | 50.0% | |
| CCGGAATATCTGAGCCAGTT+TGG | - | chr5_4:10431312-10431331 | Msa0836780:intron | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr5_4:10431502-10431521 | Msa0836780:intron | 50.0% | |
| ATCTAATACTCCCTCCGTCC+CGG | + | chr5_4:10431519-10431538 | None:intergenic | 50.0% | |
| GTCCTGTATGACAGGGATTG+CGG | - | chr5_4:10431549-10431568 | Msa0836780:intron | 50.0% | |
| TCCTGTATGACAGGGATTGC+GGG | - | chr5_4:10431550-10431569 | Msa0836780:intron | 50.0% | |
| TGAGAGTGGGGGATTATGGA+GGG | + | chr5_4:10431694-10431713 | None:intergenic | 50.0% | |
| TCTGTGAGAGTGGGGGATTA+TGG | + | chr5_4:10431698-10431717 | None:intergenic | 50.0% | |
| ! | GCTGAACAACGGCCTTGTAT+CGG | + | chr5_4:10432018-10432037 | None:intergenic | 50.0% |
| AATGGCAAGGGAATAGGCAG+GGG | + | chr5_4:10432062-10432081 | None:intergenic | 50.0% | |
| GAAATGGCAAGGGAATAGGC+AGG | + | chr5_4:10432064-10432083 | None:intergenic | 50.0% | |
| ! | GGAAACCAGGTTGGCAAGTA+CGG | - | chr5_4:10432095-10432114 | Msa0836780:intron | 50.0% |
| ATTCACCGTACTTGCCAACC+TGG | + | chr5_4:10432103-10432122 | None:intergenic | 50.0% | |
| GGGAATGGAATGGACGTCAA+GGG | + | chr5_4:10432165-10432184 | None:intergenic | 50.0% | |
| TGGGAATGGAATGGACGTCA+AGG | + | chr5_4:10432166-10432185 | None:intergenic | 50.0% | |
| TGACGTCCATTCCATTCCCA+TGG | - | chr5_4:10432166-10432185 | Msa0836780:intron | 50.0% | |
| TAATCTGGCAGCCATGGGAA+TGG | + | chr5_4:10432180-10432199 | None:intergenic | 50.0% | |
| GAACGTAATCTGGCAGCCAT+GGG | + | chr5_4:10432185-10432204 | None:intergenic | 50.0% | |
| AGCACTGCTGGAACGTAATC+TGG | + | chr5_4:10432195-10432214 | None:intergenic | 50.0% | |
| ! | CAGTGCTGTCTTCCCACTTT+TGG | - | chr5_4:10432208-10432227 | Msa0836780:intron | 50.0% |
| CACCGGTATGGAATTACACG+AGG | - | chr5_4:10432251-10432270 | Msa0836780:intron | 50.0% | |
| GGCAGAGTTACTTAGGGGTT+GGG | - | chr5_4:10432283-10432302 | Msa0836780:intron | 50.0% | |
| GCAGAGTTACTTAGGGGTTG+GGG | - | chr5_4:10432284-10432303 | Msa0836780:intron | 50.0% | |
| TTACTTAGGGGTTGGGGCTT+CGG | - | chr5_4:10432290-10432309 | Msa0836780:intron | 50.0% | |
| CAACTCAGGAGGACACAATG+TGG | + | chr5_4:10432363-10432382 | None:intergenic | 50.0% | |
| TTTAATGCTCCCCACCCTCA+TGG | - | chr5_4:10432499-10432518 | Msa0836780:intron | 50.0% | |
| TGTGACTCCCTGCTGATCTA+TGG | - | chr5_4:10432624-10432643 | Msa0836780:intron | 50.0% | |
| CTAGGCAAGGTTAACCACAC+GGG | + | chr5_4:10432657-10432676 | None:intergenic | 50.0% | |
| GCTAGGCAAGGTTAACCACA+CGG | + | chr5_4:10432658-10432677 | None:intergenic | 50.0% | |
| CTTCTGTGGAATGCTAGGCA+AGG | + | chr5_4:10432670-10432689 | None:intergenic | 50.0% | |
| ACCAGCTTCTGTGGAATGCT+AGG | + | chr5_4:10432675-10432694 | None:intergenic | 50.0% | |
| TGAAGGACATAAGCTCAGGC+TGG | - | chr5_4:10432764-10432783 | Msa0836780:intron | 50.0% | |
| GAAGGACATAAGCTCAGGCT+GGG | - | chr5_4:10432765-10432784 | Msa0836780:intron | 50.0% | |
| ! | GCTGGGTCTGCATGTGTTTT+CGG | - | chr5_4:10432782-10432801 | Msa0836780:intron | 50.0% |
| !! | GCAACGGGTTAGGGGTTATG+AGG | + | chr5_4:10426363-10426382 | None:intergenic | 55.0% |
| ! | AGGCCGAGAAGCTTTGGCAA+CGG | + | chr5_4:10426379-10426398 | None:intergenic | 55.0% |
| GTTTGCAGGCCGAGAAGCTT+TGG | + | chr5_4:10426385-10426404 | None:intergenic | 55.0% | |
| CAGAGCACAGGCAGTAGATG+CGG | + | chr5_4:10426429-10426448 | None:intergenic | 55.0% | |
| !! | TGAGTTGATTGGGTTGGCCG+CGG | - | chr5_4:10426861-10426880 | Msa0836780:exon | 55.0% |
| TGAATCAGCTTGAGGGTCCG+CGG | + | chr5_4:10426881-10426900 | None:intergenic | 55.0% | |
| ! | TCGTACCGGTCAGACACTAC+AGG | - | chr5_4:10426939-10426958 | Msa0836780:CDS | 55.0% |
| ! | CTCTTGTGGTTTGCCTCGAG+TGG | - | chr5_4:10427043-10427062 | Msa0836780:CDS | 55.0% |
| TGGGCCTATGGAGTTCGTCT+CGG | + | chr5_4:10427157-10427176 | None:intergenic | 55.0% | |
| CGCGTGAGCTCATAGATCCA+AGG | + | chr5_4:10428892-10428911 | None:intergenic | 55.0% | |
| AGACCTATGTGCAGGACTGG+TGG | - | chr5_4:10429418-10429437 | Msa0836780:intron | 55.0% | |
| ACTCCACCAGTCCTGCACAT+AGG | + | chr5_4:10429424-10429443 | None:intergenic | 55.0% | |
| TGGTTCTCCAAGCGAGTACC+AGG | - | chr5_4:10429534-10429553 | Msa0836780:CDS | 55.0% | |
| CTCCAAGCGAGTACCAGGAT+AGG | - | chr5_4:10429539-10429558 | Msa0836780:CDS | 55.0% | |
| TCCCTATCCTGGTACTCGCT+TGG | + | chr5_4:10429544-10429563 | None:intergenic | 55.0% | |
| ATGTTCTGTTTCCGGGGCTG+TGG | - | chr5_4:10430136-10430155 | Msa0836780:intron | 55.0% | |
| ! | TCCGGGGCTGTGGATTTTCA+TGG | - | chr5_4:10430146-10430165 | Msa0836780:intron | 55.0% |
| AGGGCAAGGACGGCAGAATA+TGG | - | chr5_4:10430187-10430206 | Msa0836780:intron | 55.0% | |
| GTCCATGGAGCTCTTGCATC+AGG | - | chr5_4:10430419-10430438 | Msa0836780:intron | 55.0% | |
| GCCAGTCTGTGAATCACTGG+AGG | - | chr5_4:10430807-10430826 | Msa0836780:intron | 55.0% | |
| CTCAGATATTCCGGGACGGA+GGG | + | chr5_4:10431306-10431325 | None:intergenic | 55.0% | |
| CTGGCTCAGATATTCCGGGA+CGG | + | chr5_4:10431310-10431329 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr5_4:10431506-10431525 | Msa0836780:intron | 55.0% | |
| TCCCGCAATCCCTGTCATAC+AGG | + | chr5_4:10431554-10431573 | None:intergenic | 55.0% | |
| GGGGATTATGGAGGGTAGGT+TGG | + | chr5_4:10431686-10431705 | None:intergenic | 55.0% | |
| AGTGGGGGATTATGGAGGGT+AGG | + | chr5_4:10431690-10431709 | None:intergenic | 55.0% | |
| GTGAGAGTGGGGGATTATGG+AGG | + | chr5_4:10431695-10431714 | None:intergenic | 55.0% | |
| TGGCAGCCATGGGAATGGAA+TGG | + | chr5_4:10432175-10432194 | None:intergenic | 55.0% | |
| GGAACGTAATCTGGCAGCCA+TGG | + | chr5_4:10432186-10432205 | None:intergenic | 55.0% | |
| AAGTGGGAAGACAGCACTGC+TGG | + | chr5_4:10432207-10432226 | None:intergenic | 55.0% | |
| GAATTACACGAGGAGCCGCT+GGG | - | chr5_4:10432261-10432280 | Msa0836780:intron | 55.0% | |
| AATTACACGAGGAGCCGCTG+GGG | - | chr5_4:10432262-10432281 | Msa0836780:intron | 55.0% | |
| CCTAAGTAACTCTGCCCCAG+CGG | + | chr5_4:10432279-10432298 | None:intergenic | 55.0% | |
| CGCTGGGGCAGAGTTACTTA+GGG | - | chr5_4:10432277-10432296 | Msa0836780:intron | 55.0% | |
| GCTGGGGCAGAGTTACTTAG+GGG | - | chr5_4:10432278-10432297 | Msa0836780:intron | 55.0% | |
| GGGCAGAGTTACTTAGGGGT+TGG | - | chr5_4:10432282-10432301 | Msa0836780:intron | 55.0% | |
| ! | AGAGCAAAGCACCCGAGTAG+GGG | + | chr5_4:10432605-10432624 | None:intergenic | 55.0% |
| ! | CAGAGCAAAGCACCCGAGTA+GGG | + | chr5_4:10432606-10432625 | None:intergenic | 55.0% |
| ! | ACAGAGCAAAGCACCCGAGT+AGG | + | chr5_4:10432607-10432626 | None:intergenic | 55.0% |
| CGAGGCTCCATAGATCAGCA+GGG | + | chr5_4:10432634-10432653 | None:intergenic | 55.0% | |
| GCCTAGCATTCCACAGAAGC+TGG | - | chr5_4:10432671-10432690 | Msa0836780:CDS | 55.0% | |
| CCACCTAGAACCAGCTTCTG+TGG | + | chr5_4:10432684-10432703 | None:intergenic | 55.0% | |
| !! | CCACAGAAGCTGGTTCTAGG+TGG | - | chr5_4:10432681-10432700 | Msa0836780:exon | 55.0% |
| ! | GGCCGAGAAGCTTTGGCAAC+GGG | + | chr5_4:10426378-10426397 | None:intergenic | 60.0% |
| AGCACAGGCAGTAGATGCGG+CGG | + | chr5_4:10426426-10426445 | None:intergenic | 60.0% | |
| CGGCATGCAGCCTCGATTGT+GGG | + | chr5_4:10427357-10427376 | None:intergenic | 60.0% | |
| ACGGCATGCAGCCTCGATTG+TGG | + | chr5_4:10427358-10427377 | None:intergenic | 60.0% | |
| ATCGAGGCTGCATGCCGTTG+TGG | - | chr5_4:10427360-10427379 | Msa0836780:intron | 60.0% | |
| CTGAGGTTCAGAGGCTTGGG+TGG | + | chr5_4:10429449-10429468 | None:intergenic | 60.0% | |
| GCTCAGATATTCCGGGACGG+AGG | + | chr5_4:10431307-10431326 | None:intergenic | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr5_4:10431505-10431524 | Msa0836780:intron | 60.0% | |
| CCAGGGAGTAGGGAGACACT+AGG | + | chr5_4:10431648-10431667 | None:intergenic | 60.0% | |
| CCTAGTGTCTCCCTACTCCC+TGG | - | chr5_4:10431645-10431664 | Msa0836780:intron | 60.0% | |
| GGAATTACACGAGGAGCCGC+TGG | - | chr5_4:10432260-10432279 | Msa0836780:intron | 60.0% | |
| CCGCTGGGGCAGAGTTACTT+AGG | - | chr5_4:10432276-10432295 | Msa0836780:intron | 60.0% | |
| GCGAGGCTCCATAGATCAGC+AGG | + | chr5_4:10432635-10432654 | None:intergenic | 60.0% | |
| CAAGGTTAACCACACGGGCG+AGG | + | chr5_4:10432652-10432671 | None:intergenic | 60.0% | |
| CAGGCAGTAGATGCGGCGGA+GGG | + | chr5_4:10426422-10426441 | None:intergenic | 65.0% | |
| ACAGGCAGTAGATGCGGCGG+AGG | + | chr5_4:10426423-10426442 | None:intergenic | 65.0% | |
| TCTATGGAGCCTCGCCCGTG+TGG | - | chr5_4:10432640-10432659 | Msa0836780:CDS | 65.0% | |
| CTCGGCCTGCAAACTCGCGC+CGG | - | chr5_4:10426391-10426410 | Msa0836780:three_prime_UTR | 70.0% | |
| GCAGTAGATGCGGCGGAGGG+CGG | + | chr5_4:10426419-10426438 | None:intergenic | 70.0% | |
| !! | CGGTGCCGGCGCGAGTTTGC+AGG | + | chr5_4:10426399-10426418 | None:intergenic | 75.0% |
| ! | GATGCGGCGGAGGGCGGTGC+CGG | + | chr5_4:10426413-10426432 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10426308 | 10432967 | 10426308 | ID=Msa0836780;Name=Msa0836780 |
| chr5_4 | mRNA | 10426308 | 10432967 | 10426308 | ID=Msa0836780-mRNA-1;Parent=Msa0836780;Name=Msa0836780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175|0.75|0.66|1|0.87|0.77|9|567|420 |
| chr5_4 | exon | 10426308 | 10427323 | 10426308 | ID=Msa0836780-mRNA-1:exon:4631;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10428835 | 10428954 | 10428835 | ID=Msa0836780-mRNA-1:exon:4630;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10429024 | 10429086 | 10429024 | ID=Msa0836780-mRNA-1:exon:4629;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10429509 | 10429843 | 10429509 | ID=Msa0836780-mRNA-1:exon:4628;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10430315 | 10430390 | 10430315 | ID=Msa0836780-mRNA-1:exon:4627;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10431586 | 10431631 | 10431586 | ID=Msa0836780-mRNA-1:exon:4626;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10432315 | 10432416 | 10432315 | ID=Msa0836780-mRNA-1:exon:4625;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10432626 | 10432706 | 10432626 | ID=Msa0836780-mRNA-1:exon:4624;Parent=Msa0836780-mRNA-1 |
| chr5_4 | exon | 10432802 | 10432967 | 10432802 | ID=Msa0836780-mRNA-1:exon:4623;Parent=Msa0836780-mRNA-1 |
| chr5_4 | five_prime_UTR | 10432802 | 10432967 | 10432802 | ID=Msa0836780-mRNA-1:five_prime_utr;Parent=Msa0836780-mRNA-1 |
| chr5_4 | five_prime_UTR | 10432698 | 10432706 | 10432698 | ID=Msa0836780-mRNA-1:five_prime_utr;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10432626 | 10432697 | 10432626 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10432315 | 10432416 | 10432315 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10431586 | 10431631 | 10431586 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10430315 | 10430390 | 10430315 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10429509 | 10429843 | 10429509 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10429024 | 10429086 | 10429024 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10428835 | 10428954 | 10428835 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | CDS | 10426875 | 10427323 | 10426875 | ID=Msa0836780-mRNA-1:cds;Parent=Msa0836780-mRNA-1 |
| chr5_4 | three_prime_UTR | 10426308 | 10426874 | 10426308 | ID=Msa0836780-mRNA-1:three_prime_utr;Parent=Msa0836780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
