AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838410 MtrunA17_Chr5g0405961 96.935 522 16 0 1 522 1 522 0.0 1030
Msa0838410 MtrunA17_Chr8g0371401 43.983 482 199 20 23 479 15 450 4.81e-87 275
Msa0838410 MtrunA17_Chr1g0157011 34.674 522 255 23 15 473 27 525 4.00e-59 204
Msa0838410 MtrunA17_Chr3g0143261 32.637 383 214 11 80 439 88 449 7.68e-44 161
Msa0838410 MtrunA17_Chr3g0143171 40.299 201 101 6 250 439 149 341 1.32e-36 140
Msa0838410 MtrunA17_Chr4g0045341 42.683 82 43 2 353 430 96 177 7.16e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838410 AT4G35890.1 31.238 509 232 20 23 477 44 488 1.14e-56 197
Msa0838410 AT5G66100.1 34.532 417 206 14 49 439 43 418 1.82e-46 169
Msa0838410 AT4G35890.2 32.304 421 191 19 23 400 44 413 1.57e-37 143
Msa0838410 AT5G21160.1 34.637 179 93 6 268 437 196 359 6.45e-22 100
Msa0838410 AT5G21160.2 34.637 179 93 6 268 437 196 359 6.60e-22 100
Msa0838410 AT5G21160.3 34.637 179 93 6 268 437 196 359 6.61e-22 100
Msa0838410 AT5G66100.2 31.792 346 169 14 49 368 43 347 3.81e-16 80.5

Find 214 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCAGCAATTAGCGTTAT+TGG 0.145365 5_4:+12795268 None:intergenic
TGTTGTGTTTGATTGGTTTC+TGG 0.151759 5_4:+12796122 None:intergenic
TAAATTCTCGTGAGACATTT+AGG 0.221762 5_4:-12792967 Msa0838410:three_prime_UTR
TTGAATTTGCGGAGGAATTT+TGG 0.243349 5_4:-12792737 Msa0838410:three_prime_UTR
ACTTCTCTGTGTGTGGTCTC+TGG 0.268404 5_4:+12795949 None:intergenic
AGTGTCCTCCTTAACTCTTA+TGG 0.283858 5_4:+12793038 None:intergenic
TATATTCTTGCGGAAGAATA+TGG 0.284764 5_4:-12795308 Msa0838410:CDS
CCACCACCATTGCGGCCTTT+TGG 0.303201 5_4:-12795695 Msa0838410:CDS
ACTATCCATGCAACTTCTTC+AGG 0.315616 5_4:+12792339 None:intergenic
TCTCACCACCATCATAACTA+TGG 0.319138 5_4:-12795845 Msa0838410:CDS
GAGAGAAAATGTGGTAGATT+AGG 0.325107 5_4:+12797579 None:intergenic
GTGTCCTCCTTAACTCTTAT+GGG 0.328420 5_4:+12793039 None:intergenic
ATGTATGTTCTTAGCCTTAG+AGG 0.329117 5_4:-12792774 Msa0838410:three_prime_UTR
AGTTCAAATGCATCTTCTAA+TGG 0.332097 5_4:-12796100 Msa0838410:CDS
GGATAACATGATTGTTGAAT+AGG 0.337435 5_4:-12792946 Msa0838410:three_prime_UTR
GTTCAAATGCATCTTCTAAT+GGG 0.338948 5_4:-12796099 Msa0838410:CDS
TATTATAGGGAGACAAAATA+AGG 0.339170 5_4:-12793389 Msa0838410:intron
AGAGATGGCCTTATAATTCT+TGG 0.343973 5_4:+12795746 None:intergenic
TCGTCGAAGGGTTTGTTAGA+TGG 0.345103 5_4:-12797089 Msa0838410:CDS
TTTGAACTGTTGTGTTTGAT+TGG 0.345506 5_4:+12796115 None:intergenic
TCAGAGCATACACCTGCATT+TGG 0.346720 5_4:-12793198 Msa0838410:CDS
CTCCGAAACTCCGCCATTGC+CGG 0.351037 5_4:+12797184 None:intergenic
TGAATGAATGGTGCAGAATT+AGG 0.352393 5_4:+12795719 None:intergenic
TTCCGGCAATGGCGGAGTTT+CGG 0.354961 5_4:-12797186 Msa0838410:CDS
GCGTTATTGGAACCCAGCCC+TGG 0.355999 5_4:+12795281 None:intergenic
CAGAGCATACACCTGCATTT+GGG 0.357232 5_4:-12793197 Msa0838410:CDS
GAGTTTCTCCAAGAATTATA+AGG 0.357825 5_4:-12795754 Msa0838410:CDS
ATCGATAACAACGAATGATT+AGG 0.359163 5_4:+12797467 None:intergenic
GGCAAAATGATTGGGAGAAA+TGG 0.361134 5_4:-12793365 Msa0838410:CDS
AGGTTATCGGAGGAATGATT+AGG 0.361574 5_4:+12797422 None:intergenic
GGTTATCGGAGGAATGATTA+GGG 0.363725 5_4:+12797423 None:intergenic
GGAGACTGTGTGTGGTCTCT+TGG 0.365799 5_4:+12795971 None:intergenic
TAATGTAAATGTAAACAATA+TGG 0.368486 5_4:-12796155 Msa0838410:CDS
CATTCCCGCCGTTTCTTCAT+CGG 0.370928 5_4:-12797336 Msa0838410:CDS
ACTTCAGGACTTGTAACATT+AGG 0.371270 5_4:+12793318 None:intergenic
TTCTGAGGGAAGAGGAAATA+TGG 0.374842 5_4:-12792584 Msa0838410:three_prime_UTR
TGGAGACTGTGCATGGTCTC+TGG 0.385549 5_4:+12795991 None:intergenic
CTTCTCTGTGTGTGGTCTCT+GGG 0.386745 5_4:+12795950 None:intergenic
CTTGTGGCTGCGCTTGTCCT+AGG 0.391247 5_4:-12792557 Msa0838410:three_prime_UTR
CCGATGCAGCTATCGAAACT+TGG 0.392131 5_4:+12796053 None:intergenic
ACTGGTCAAGTTGACATTCA+TGG 0.392401 5_4:-12793135 Msa0838410:CDS
ATCTTCTGTTTCTCCATGGC+AGG 0.393819 5_4:-12797066 Msa0838410:intron
CCAATGCCTCTTTATTATGC+AGG 0.404105 5_4:-12795503 Msa0838410:CDS
GAATTATCTGGTAGAACAAC+TGG 0.404768 5_4:+12793219 None:intergenic
TCGATAACAACGAATGATTA+GGG 0.404797 5_4:+12797468 None:intergenic
GCAAGCAAAACCATCCTCTA+AGG 0.405848 5_4:+12792760 None:intergenic
TTGGGAGCCCATAAGAGTTA+AGG 0.411669 5_4:-12793046 Msa0838410:three_prime_UTR
AAATAAGGAGGCAAAATGAT+TGG 0.412088 5_4:-12793374 Msa0838410:CDS
AGAGAAAATGTGGTAGATTA+GGG 0.414321 5_4:+12797580 None:intergenic
TTGCTATGCAACTGAGGGTC+TGG 0.415544 5_4:+12795479 None:intergenic
GTAAGAGACCTGCTTGGAAT+AGG 0.423840 5_4:-12797211 Msa0838410:CDS
ATGTCCTGATTTAACACTTC+AGG 0.425026 5_4:+12793303 None:intergenic
TGCTCGAGGTTCTACGAAAT+CGG 0.425168 5_4:-12797114 Msa0838410:CDS
ACCTAAAATAGTAGTCAATC+TGG 0.425590 5_4:+12795447 None:intergenic
GAAAGATTGCAATAACGCTT+TGG 0.426628 5_4:+12797726 None:intergenic
CCTGCTTGGAATAGGTCTTC+CGG 0.429708 5_4:-12797203 Msa0838410:CDS
CGCTGCTGTGGATGATCACT+TGG 0.431392 5_4:+12795917 None:intergenic
CTCTCAACTAGTGAAATTAC+TGG 0.436685 5_4:-12793153 Msa0838410:CDS
ATAATTCTTGGAGAAACTCT+TGG 0.437390 5_4:+12795758 None:intergenic
GTTCCAATAACGCTAATTGC+TGG 0.437458 5_4:-12795271 Msa0838410:CDS
GCTCAGATTTCTCTACTTCA+AGG 0.437701 5_4:-12793113 Msa0838410:CDS
AAGTCCTGAAGTGTTAAATC+AGG 0.452937 5_4:-12793307 Msa0838410:CDS
TTCATCTGTGGTTGAAGTGC+AGG 0.453895 5_4:-12793662 Msa0838410:intron
AGAATATGGATGCCCAGGGC+TGG 0.455278 5_4:-12795294 Msa0838410:CDS
ACGACGTGATTGAAGGTTAT+CGG 0.459511 5_4:+12797409 None:intergenic
CGATGAAGAAACGGCGGGAA+TGG 0.459920 5_4:+12797337 None:intergenic
ATGTCATTCCAGACAAGAAA+AGG 0.460496 5_4:+12792490 None:intergenic
GGAAGACTGTGTATGGTCTC+TGG 0.464142 5_4:+12796012 None:intergenic
GGTGAGCGCAACGGTGGTAC+TGG 0.464601 5_4:-12797233 Msa0838410:CDS
CCAAAAGGCCGCAATGGTGG+TGG 0.468564 5_4:+12795695 None:intergenic
GCGGAAGACGACGTGATTGA+AGG 0.468631 5_4:+12797402 None:intergenic
CGGAGGAATGATTAGGGGAA+TGG 0.474819 5_4:+12797429 None:intergenic
TTCGGAGGTTCAGCCGGTGA+TGG 0.475511 5_4:-12797168 Msa0838410:CDS
GGTGGCCACATGGGATTCCA+TGG 0.476427 5_4:-12795674 Msa0838410:intron
GGAACAGGCGTGATCAAGAC+TGG 0.476789 5_4:-12795823 Msa0838410:CDS
TTGTTGTGTGCGTGCGTGCG+TGG 0.478522 5_4:+12797676 None:intergenic
GGTGTATGCTCTGAATTATC+TGG 0.480744 5_4:+12793207 None:intergenic
AATAAGGAGGCAAAATGATT+GGG 0.483247 5_4:-12793373 Msa0838410:CDS
TACGAAATCGGAGTCGTCGA+AGG 0.486676 5_4:-12797102 Msa0838410:CDS
TTAGAGCTGCAAACGTGCTT+AGG 0.488374 5_4:-12793085 Msa0838410:exon
GCGGAAGAATATGGATGCCC+AGG 0.489267 5_4:-12795299 Msa0838410:CDS
CCAAGTTTCGATAGCTGCAT+CGG 0.489400 5_4:-12796053 Msa0838410:CDS
ACCATCATAACTATGGGAAC+AGG 0.492989 5_4:-12795838 Msa0838410:CDS
TCCGACTTGTCTTTGCATAG+AGG 0.493121 5_4:+12796180 None:intergenic
TCAAGTAGTTCGTGGTGAAT+CGG 0.494218 5_4:-12797372 Msa0838410:CDS
GAATATGGATGCCCAGGGCT+GGG 0.496158 5_4:-12795293 Msa0838410:CDS
AGAGGCATTGGAGGAACAAA+GGG 0.496505 5_4:+12795515 None:intergenic
CGATGCAGCTATCGAAACTT+GGG 0.497367 5_4:+12796054 None:intergenic
TAATCATTCGTTGTTATCGA+TGG 0.500645 5_4:-12797465 Msa0838410:exon
GTAACATTAGGAAACTGAAC+AGG 0.501310 5_4:+12793330 None:intergenic
AGAAAAGGACGGAATATAGC+AGG 0.504338 5_4:+12792505 None:intergenic
GCATAATAAAGAGGCATTGG+AGG 0.506118 5_4:+12795506 None:intergenic
CCACCGATAGATTCACTAAG+AGG 0.506893 5_4:-12795542 Msa0838410:CDS
GGTCCACATCAGCGTGGAGA+TGG 0.507876 5_4:-12795869 Msa0838410:CDS
AAAGCAGCTGAGGGGCAGTC+GGG 0.509014 5_4:+12792703 None:intergenic
AGTGAATCTATCGGTGGAGG+TGG 0.510618 5_4:+12795548 None:intergenic
GGTCTCTGGAAGACTGTGTA+TGG 0.512768 5_4:+12796005 None:intergenic
ATCTCTGATAACGCAGATAA+CGG 0.514514 5_4:-12797257 Msa0838410:CDS
TGGAATAGGTCTTCCGGCAA+TGG 0.514969 5_4:-12797197 Msa0838410:CDS
GCAAATGCACAATATTGCTC+TGG 0.519548 5_4:-12793271 Msa0838410:CDS
ATAGCTACCTGCTGCTTCTG+AGG 0.521934 5_4:-12792599 Msa0838410:three_prime_UTR
GGTCTCTTGGAGACTGTGCA+TGG 0.522510 5_4:+12795984 None:intergenic
CGGAGTTTCGGAGGTTCAGC+CGG 0.525049 5_4:-12797174 Msa0838410:CDS
CCTCTTCCCTCAGAAGCAGC+AGG 0.525923 5_4:+12792592 None:intergenic
AATCCCATGTGGCCACCAAA+AGG 0.526566 5_4:+12795680 None:intergenic
AGATTCCTCCGATGAAGAAA+CGG 0.531484 5_4:+12797328 None:intergenic
GCCTGTTCCCATAGTTATGA+TGG 0.532058 5_4:+12795837 None:intergenic
TCACTAGTTGAGAGCTGCAA+TGG 0.533513 5_4:+12793162 None:intergenic
ATGGATCTTCTGTTTCTCCA+TGG 0.533973 5_4:-12797070 Msa0838410:CDS
AGCATCTTTGATGTGGTCCT+AGG 0.538334 5_4:+12792540 None:intergenic
CAATGCCTCTTTATTATGCA+GGG 0.538400 5_4:-12795502 Msa0838410:CDS
ATCTGGGGTCAGCTTCCCAC+CGG 0.538434 5_4:-12792675 Msa0838410:three_prime_UTR
AATGGTGGTGGATGAATGAA+TGG 0.540490 5_4:+12795707 None:intergenic
CAAGTTTCGATAGCTGCATC+GGG 0.540907 5_4:-12796052 Msa0838410:CDS
CACGAGCGTGCATCCATCAC+CGG 0.541601 5_4:+12797155 None:intergenic
CCACGAACTACTTGATTCCA+CGG 0.542749 5_4:+12797380 None:intergenic
CGGCAATGGCGGAGTTTCGG+AGG 0.543840 5_4:-12797183 Msa0838410:CDS
GCTTTATCTGATTCTGCTCG+AGG 0.544333 5_4:-12797128 Msa0838410:CDS
TGTTGTGTGCGTGCGTGCGT+GGG 0.544979 5_4:+12797677 None:intergenic
TCCACCGGAGCAGTTACAAT+CGG 0.545019 5_4:+12797302 None:intergenic
TTGATTGGTTTCTGGCGAGT+TGG 0.545084 5_4:+12796130 None:intergenic
CAAATCCACTTCTCTGTGTG+TGG 0.546847 5_4:+12795942 None:intergenic
GAAGAGGAAGAAGATGAAGA+AGG 0.547386 5_4:+12797639 None:intergenic
TCCCGCCGTTTCTTCATCGG+AGG 0.548797 5_4:-12797333 Msa0838410:CDS
AAATTGTGCGATCTAATCGC+AGG 0.549505 5_4:+12797609 None:intergenic
GATTTGTGAGATTTAGATGA+AGG 0.549803 5_4:+12797553 None:intergenic
CGTTATTGGAACCCAGCCCT+GGG 0.551803 5_4:+12795282 None:intergenic
TGTCTTTGCATAGAGGAAGA+AGG 0.552018 5_4:+12796187 None:intergenic
CCGTGGAATCAAGTAGTTCG+TGG 0.552032 5_4:-12797380 Msa0838410:CDS
CTCACCACCATCATAACTAT+GGG 0.552412 5_4:-12795844 Msa0838410:CDS
CCTGCATAATAAAGAGGCAT+TGG 0.552572 5_4:+12795503 None:intergenic
CCACCAAAAGGCCGCAATGG+TGG 0.556739 5_4:+12795692 None:intergenic
CCTGCTGCTTCTGAGGGAAG+AGG 0.557049 5_4:-12792592 Msa0838410:three_prime_UTR
AATTCATTTAGACATCGTAA+TGG 0.558297 5_4:-12795893 Msa0838410:CDS
GAGTTAAGGAGGACACTGGC+AGG 0.559141 5_4:-12793032 Msa0838410:three_prime_UTR
CAACAGAAACAAACCTGCCA+TGG 0.562470 5_4:+12797053 None:intergenic
TGGCCACCAAAAGGCCGCAA+TGG 0.562522 5_4:+12795689 None:intergenic
AGAGACCACACACAGAGAAG+TGG 0.564958 5_4:-12795947 Msa0838410:CDS
GTGCTCAAATCCCCAAATGC+AGG 0.566808 5_4:+12793186 None:intergenic
ACGAAATCGGAGTCGTCGAA+GGG 0.566891 5_4:-12797101 Msa0838410:CDS
AAAAGCAGCTGAGGGGCAGT+CGG 0.567836 5_4:+12792702 None:intergenic
AAGAGGCATTGGAGGAACAA+AGG 0.568226 5_4:+12795514 None:intergenic
GGAGCTGCAAATAATACCAC+TGG 0.568454 5_4:+12795569 None:intergenic
ATGTTCTTAGCCTTAGAGGA+TGG 0.572421 5_4:-12792770 Msa0838410:three_prime_UTR
GCAAACGTGCTTAGGCACTT+CGG 0.574735 5_4:-12793077 Msa0838410:three_prime_UTR
TCCTCTATGCAAAGACAAGT+CGG 0.578623 5_4:-12796181 Msa0838410:CDS
ACAACTATATATGATGGTGC+AGG 0.581309 5_4:-12793246 Msa0838410:CDS
GAACCATCTCCACGCTGATG+TGG 0.581578 5_4:+12795866 None:intergenic
TCCGATTGTAACTGCTCCGG+TGG 0.583656 5_4:-12797303 Msa0838410:CDS
GGGGTGCAGACTGCTGTGTG+TGG 0.584093 5_4:+12796074 None:intergenic
ATTCTTGGAGAAACTCTTGG+TGG 0.585238 5_4:+12795761 None:intergenic
ACTATCTTGCTATGCAACTG+AGG 0.585731 5_4:+12795473 None:intergenic
CTTAGTGAATCTATCGGTGG+AGG 0.585762 5_4:+12795545 None:intergenic
TTCAAATGCATCTTCTAATG+GGG 0.586557 5_4:-12796098 Msa0838410:CDS
TAGCTACCTGCTGCTTCTGA+GGG 0.586880 5_4:-12792598 Msa0838410:three_prime_UTR
CCGGAAGACCTATTCCAAGC+AGG 0.589441 5_4:+12797203 None:intergenic
TTAGGAAACTGAACAGGAGA+AGG 0.590429 5_4:+12793336 None:intergenic
CTAAATGAATTACGCTGCTG+TGG 0.591207 5_4:+12795905 None:intergenic
CGAGCAGAATCAGATAAAGC+AGG 0.592750 5_4:+12797131 None:intergenic
CTGGAGACAACTATATATGA+TGG 0.592945 5_4:-12793252 Msa0838410:CDS
GCAGAATTAGGAGGCAGAGA+TGG 0.594443 5_4:+12795731 None:intergenic
TGAAGGTGTGAGAGAAAATG+TGG 0.594507 5_4:+12797570 None:intergenic
TCCTCCGATGAAGAAACGGC+GGG 0.595820 5_4:+12797332 None:intergenic
TGAAGAAACGGCGGGAATGG+CGG 0.596138 5_4:+12797340 None:intergenic
TTCAGAACTAGCTGCTCCAG+TGG 0.596257 5_4:-12795585 Msa0838410:intron
TAAGACCTGAAGAAGTTGCA+TGG 0.597775 5_4:-12792344 Msa0838410:three_prime_UTR
CGGAAGAATATGGATGCCCA+GGG 0.598987 5_4:-12795298 Msa0838410:CDS
AGAGCATACACCTGCATTTG+GGG 0.599587 5_4:-12793196 Msa0838410:CDS
ATCAGAGATCACTTCAGCAG+AGG 0.601515 5_4:+12797271 None:intergenic
GAGGAAATATGGCTTTCTTG+TGG 0.601693 5_4:-12792573 Msa0838410:three_prime_UTR
TCATTTAGACATCGTAATGG+TGG 0.603196 5_4:-12795890 Msa0838410:CDS
TCTGGCCCTGCATAATAAAG+AGG 0.605460 5_4:+12795497 None:intergenic
GGTCTCTGGGAGACTGTGTG+TGG 0.607006 5_4:+12795963 None:intergenic
GAAAAGGACGGAATATAGCA+GGG 0.611388 5_4:+12792506 None:intergenic
CGGTGATGGATGCACGCTCG+TGG 0.617993 5_4:-12797154 Msa0838410:CDS
AATAGGTCTTCCGGCAATGG+CGG 0.619726 5_4:-12797194 Msa0838410:CDS
CTATCTTGCTATGCAACTGA+GGG 0.620241 5_4:+12795474 None:intergenic
GGAGCCCATAAGAGTTAAGG+AGG 0.620757 5_4:-12793043 Msa0838410:three_prime_UTR
TTGCTTGCTTGAATTTGCGG+AGG 0.624364 5_4:-12792745 Msa0838410:three_prime_UTR
AATCGCAGGGAATAATGAAG+AGG 0.626480 5_4:+12797623 None:intergenic
TTGTTATCGATGGAAATGAT+CGG 0.627112 5_4:-12797455 Msa0838410:exon
TCAAGCAAGCATCTTTGATG+TGG 0.631262 5_4:+12792533 None:intergenic
AATCACGTCGTCTTCCGCCG+TGG 0.631568 5_4:-12797397 Msa0838410:CDS
TGCAATTCGAACTTCATCTG+TGG 0.632236 5_4:-12793674 Msa0838410:CDS
ATCACAATAGTCGCATCACT+AGG 0.634339 5_4:+12792819 None:intergenic
AATTGTGCGATCTAATCGCA+GGG 0.640232 5_4:+12797610 None:intergenic
GTTATCGGAGGAATGATTAG+GGG 0.640368 5_4:+12797424 None:intergenic
AACAATCGTCGAAATTACAA+TGG 0.641091 5_4:-12795800 Msa0838410:CDS
AAAATTGCATTAATACCGTG+TGG 0.641396 5_4:+12792296 None:intergenic
TGTATGGTCTCTGGAAGAAG+AGG 0.648052 5_4:+12796021 None:intergenic
TAGTCAAAGATATATTCTTG+CGG 0.650528 5_4:-12795318 Msa0838410:CDS
TTCCTCCGATGAAGAAACGG+CGG 0.651065 5_4:+12797331 None:intergenic
ACACCTCTTAGTGAATCTAT+CGG 0.653591 5_4:+12795539 None:intergenic
AACGGAGGTGAGCGCAACGG+TGG 0.654870 5_4:-12797239 Msa0838410:CDS
TCATTCATCCACCACCATTG+CGG 0.655632 5_4:-12795703 Msa0838410:CDS
ACTATATATGATGGTGCAGG+AGG 0.657550 5_4:-12793243 Msa0838410:CDS
ATAAGAGTTAAGGAGGACAC+TGG 0.657959 5_4:-12793036 Msa0838410:three_prime_UTR
TCAAATGCATCTTCTAATGG+GGG 0.659504 5_4:-12796097 Msa0838410:CDS
ATGAATGGTGCAGAATTAGG+AGG 0.661115 5_4:+12795722 None:intergenic
CCTCTTAGTGAATCTATCGG+TGG 0.662280 5_4:+12795542 None:intergenic
CATTCCAGACAAGAAAAGGA+CGG 0.662587 5_4:+12792494 None:intergenic
GCAGAGGTAGAATCATCCAC+CGG 0.663830 5_4:+12797287 None:intergenic
GATAACGGAGGTGAGCGCAA+CGG 0.670817 5_4:-12797242 Msa0838410:CDS
TATAGGGAGACAAAATAAGG+AGG 0.672967 5_4:-12793386 Msa0838410:intron
GATGCAGCTATCGAAACTTG+GGG 0.675987 5_4:+12796055 None:intergenic
GTACTGGTAAGAGACCTGCT+TGG 0.682614 5_4:-12797217 Msa0838410:CDS
ATTATCTCAGTCTTTGCACG+TGG 0.684816 5_4:-12793000 Msa0838410:three_prime_UTR
AAAAGGACGGAATATAGCAG+GGG 0.690254 5_4:+12792507 None:intergenic
ACGTGATTGAAGGTTATCGG+AGG 0.698342 5_4:+12797412 None:intergenic
TGTTCCCATAGTTATGATGG+TGG 0.702471 5_4:+12795840 None:intergenic
TCTGATAACGCAGATAACGG+AGG 0.732118 5_4:-12797254 Msa0838410:CDS
AATGGTGGTCCACATCAGCG+TGG 0.738654 5_4:-12795875 Msa0838410:CDS
ACATACCATGGAATCCCATG+TGG 0.742129 5_4:+12795669 None:intergenic
CGAACTACTTGATTCCACGG+CGG 0.836241 5_4:+12797383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTAAATGTAAACAATA+TGG - chr5_4:12793853-12793872 Msa0838410:intron 15.0%
!!! ATTTTAATTATTTGTTCTCT+TGG - chr5_4:12795726-12795745 Msa0838410:CDS 15.0%
!!! AATGCAATTTTTATTTTACT+TGG - chr5_4:12797724-12797743 Msa0838410:five_prime_UTR 15.0%
!! TTATCAAAGAAAAAACCAAA+GGG - chr5_4:12792233-12792252 Msa0838410:three_prime_UTR 20.0%
!! TCTAACAAACTATAGTAAAT+TGG + chr5_4:12793041-12793060 None:intergenic 20.0%
!! TATGAAATTGAATTCATTGA+TGG - chr5_4:12793121-12793140 Msa0838410:CDS 20.0%
!!! TTGTTTTAAGTGTCAATTAT+AGG - chr5_4:12793784-12793803 Msa0838410:intron 20.0%
!!! TGTTTTAAGTGTCAATTATA+GGG - chr5_4:12793785-12793804 Msa0838410:intron 20.0%
!!! TTTTAAATTGCCTTTTTTGT+TGG - chr5_4:12794611-12794630 Msa0838410:intron 20.0%
!! CTTCAAAAAAGTAAGTAATT+TGG - chr5_4:12794760-12794779 Msa0838410:intron 20.0%
!! ATAATATAGAAAGCAAAAGT+AGG + chr5_4:12795249-12795268 None:intergenic 20.0%
!!! TTTTTCAGGAAATTCTTTTA+AGG - chr5_4:12795406-12795425 Msa0838410:intron 20.0%
!! ACTGTTGTCATTATTATTAT+TGG - chr5_4:12795785-12795804 Msa0838410:CDS 20.0%
!!! GTCATTATTATTATTGGTTT+TGG - chr5_4:12795791-12795810 Msa0838410:CDS 20.0%
!!! ACAAAACATAAAGATTTTCA+TGG + chr5_4:12795907-12795926 None:intergenic 20.0%
!!! AATTTTCAAGTTATCCTTTA+AGG + chr5_4:12795971-12795990 None:intergenic 20.0%
!!! ATTTCTAAGACAATTTAGAT+GGG + chr5_4:12796207-12796226 None:intergenic 20.0%
!!! AATTTCTAAGACAATTTAGA+TGG + chr5_4:12796208-12796227 None:intergenic 20.0%
!!! TATTTTTCTAAATCTTGCAT+TGG - chr5_4:12796369-12796388 Msa0838410:intron 20.0%
!!! AATTTGATTTGATATTGCAT+CGG - chr5_4:12796549-12796568 Msa0838410:intron 20.0%
!!! AAGAGCTTTTTATTAGTTAA+TGG - chr5_4:12797360-12797379 Msa0838410:CDS 20.0%
!!! AGAGCTTTTTATTAGTTAAT+GGG - chr5_4:12797361-12797380 Msa0838410:CDS 20.0%
! GTTATCAAAGAAAAAACCAA+AGG - chr5_4:12792232-12792251 Msa0838410:three_prime_UTR 25.0%
! TCATAACAGTATTATGCATA+AGG + chr5_4:12793244-12793263 None:intergenic 25.0%
! AATTCATTTAGACATCGTAA+TGG - chr5_4:12794115-12794134 Msa0838410:intron 25.0%
! ACTTTCTTAACCAACAAAAA+AGG + chr5_4:12794624-12794643 None:intergenic 25.0%
! TAGTCAAAGATATATTCTTG+CGG - chr5_4:12794690-12794709 Msa0838410:intron 25.0%
!! AATCATCTTCTACCTTTTAA+TGG - chr5_4:12794936-12794955 Msa0838410:intron 25.0%
!! TTCATCAGACAATTTGAAAT+AGG + chr5_4:12795166-12795185 None:intergenic 25.0%
!! AGCTAGTATTTTTCTCATTT+TGG - chr5_4:12795189-12795208 Msa0838410:intron 25.0%
!! GCTAGTATTTTTCTCATTTT+GGG - chr5_4:12795190-12795209 Msa0838410:intron 25.0%
!! CTAGTATTTTTCTCATTTTG+GGG - chr5_4:12795191-12795210 Msa0838410:intron 25.0%
!! TAGTATTTTTCTCATTTTGG+GGG - chr5_4:12795192-12795211 Msa0838410:intron 25.0%
! ATTATATGCAGTTCTATTTG+AGG - chr5_4:12795264-12795283 Msa0838410:CDS 25.0%
!!! AAAGTTTACAGCTTTTTTTC+AGG - chr5_4:12795392-12795411 Msa0838410:intron 25.0%
! ATGTTACAATGGATATTGTT+TGG - chr5_4:12795544-12795563 Msa0838410:CDS 25.0%
! CAATGATTGTATCCATTAAA+TGG + chr5_4:12795846-12795865 None:intergenic 25.0%
!!! AATGTTGATTGATGCATTTT+TGG - chr5_4:12795931-12795950 Msa0838410:CDS 25.0%
! ATTATGATGGTATATAGTTC+AGG + chr5_4:12796024-12796043 None:intergenic 25.0%
!! TTTGTAGTTTGTACTTATAG+TGG - chr5_4:12796120-12796139 Msa0838410:CDS 25.0%
! GTCTTAGAAATTCTTCTATT+TGG - chr5_4:12796216-12796235 Msa0838410:intron 25.0%
!! CATTTTTCTTAATCTTGCAT+TGG - chr5_4:12796512-12796531 Msa0838410:intron 25.0%
! ATAAAGAAAATCAAAACAGC+AGG + chr5_4:12796592-12796611 None:intergenic 25.0%
! TATTATAGGGAGACAAAATA+AGG - chr5_4:12796619-12796638 Msa0838410:intron 25.0%
!! CATGTTTTCTGTTTTGTAAT+CGG + chr5_4:12797097-12797116 None:intergenic 25.0%
!!! CTTCTGTTTTCATTTTTAGA+GGG + chr5_4:12797144-12797163 None:intergenic 25.0%
!!! AACAGAAGGCATTTTATTTT+TGG - chr5_4:12797156-12797175 Msa0838410:CDS 25.0%
!!! CATTTTATTTTTGGTTGTTG+TGG - chr5_4:12797165-12797184 Msa0838410:CDS 25.0%
! TAATAAAAAGCTCTTGAAAC+CGG + chr5_4:12797355-12797374 None:intergenic 25.0%
AGAGAAAATGTGGTAGATTA+GGG + chr5_4:12792431-12792450 None:intergenic 30.0%
GATTTGTGAGATTTAGATGA+AGG + chr5_4:12792458-12792477 None:intergenic 30.0%
TCGATAACAACGAATGATTA+GGG + chr5_4:12792543-12792562 None:intergenic 30.0%
ATCGATAACAACGAATGATT+AGG + chr5_4:12792544-12792563 None:intergenic 30.0%
TAATCATTCGTTGTTATCGA+TGG - chr5_4:12792543-12792562 Msa0838410:three_prime_UTR 30.0%
TTGTTATCGATGGAAATGAT+CGG - chr5_4:12792553-12792572 Msa0838410:three_prime_UTR 30.0%
TGATTGAAGTGAATTTCAGT+AGG - chr5_4:12793159-12793178 Msa0838410:CDS 30.0%
ATGTTAAACTGAATCAACAG+TGG - chr5_4:12793207-12793226 Msa0838410:CDS 30.0%
CAGTATTATGCATAAGGTAA+AGG + chr5_4:12793238-12793257 None:intergenic 30.0%
AATGTAATCACATGATGCTT+CGG - chr5_4:12793319-12793338 Msa0838410:CDS 30.0%
ATTCTTCTCACTGTACAATT+TGG - chr5_4:12793561-12793580 Msa0838410:intron 30.0%
!!! GGTAAATGCAAGTTCTTTTT+TGG - chr5_4:12793582-12793601 Msa0838410:intron 30.0%
!!! TCTTTTTTGGTCTGAAGTTA+TGG - chr5_4:12793595-12793614 Msa0838410:intron 30.0%
AAGTTATGGAATATATGCAC+AGG - chr5_4:12793609-12793628 Msa0838410:intron 30.0%
AGTTATGGAATATATGCACA+GGG - chr5_4:12793610-12793629 Msa0838410:intron 30.0%
TAAGTGTCAATTATAGGGTA+TGG - chr5_4:12793790-12793809 Msa0838410:intron 30.0%
TTTGAACTGTTGTGTTTGAT+TGG + chr5_4:12793896-12793915 None:intergenic 30.0%
AGTTCAAATGCATCTTCTAA+TGG - chr5_4:12793908-12793927 Msa0838410:intron 30.0%
GTTCAAATGCATCTTCTAAT+GGG - chr5_4:12793909-12793928 Msa0838410:intron 30.0%
TTCAAATGCATCTTCTAATG+GGG - chr5_4:12793910-12793929 Msa0838410:intron 30.0%
AACAATCGTCGAAATTACAA+TGG - chr5_4:12794208-12794227 Msa0838410:intron 30.0%
ATAATTCTTGGAGAAACTCT+TGG + chr5_4:12794253-12794272 None:intergenic 30.0%
GAGTTTCTCCAAGAATTATA+AGG - chr5_4:12794254-12794273 Msa0838410:intron 30.0%
GACATTAATACAACATACCA+TGG + chr5_4:12794354-12794373 None:intergenic 30.0%
ATGTCAAGATGATTTCTTTC+AGG - chr5_4:12794369-12794388 Msa0838410:intron 30.0%
! ACCAGATTGACTACTATTTT+AGG - chr5_4:12794560-12794579 Msa0838410:intron 30.0%
ACCTAAAATAGTAGTCAATC+TGG + chr5_4:12794564-12794583 None:intergenic 30.0%
!! TTTAGGTACTGCTTTTACTT+TGG - chr5_4:12794577-12794596 Msa0838410:intron 30.0%
TATATTCTTGCGGAAGAATA+TGG - chr5_4:12794700-12794719 Msa0838410:intron 30.0%
TAATTTACTGCTGAAGTAGA+AGG - chr5_4:12794899-12794918 Msa0838410:intron 30.0%
! AGCCACTTGTTTACAAATTT+TGG - chr5_4:12794960-12794979 Msa0838410:intron 30.0%
CACCAAAATTTGTAAACAAG+TGG + chr5_4:12794965-12794984 None:intergenic 30.0%
!!! TTACAAATTTTGGTGCTTCT+TGG - chr5_4:12794970-12794989 Msa0838410:intron 30.0%
! CAGACAATTTGAAATAGGTA+GGG + chr5_4:12795161-12795180 None:intergenic 30.0%
! TCAGACAATTTGAAATAGGT+AGG + chr5_4:12795162-12795181 None:intergenic 30.0%
GTGTATCACTAAATTAGACT+AGG - chr5_4:12795318-12795337 Msa0838410:CDS 30.0%
TTCAAAGTCCAAACAAGATA+CGG + chr5_4:12795482-12795501 None:intergenic 30.0%
TGTAACATATAATACCCAGT+AGG + chr5_4:12795532-12795551 None:intergenic 30.0%
CTGGGTATTATATGTTACAA+TGG - chr5_4:12795533-12795552 Msa0838410:CDS 30.0%
ATTGTGCATACATTCATGTA+TGG + chr5_4:12795652-12795671 None:intergenic 30.0%
AGCTAAAGTAGACCATTTAA+TGG - chr5_4:12795831-12795850 Msa0838410:CDS 30.0%
!!! TTGTTGTGCTTTTGATTTCT+TGG - chr5_4:12795863-12795882 Msa0838410:CDS 30.0%
! TTTTGATGTAGTTGCCTTAA+AGG - chr5_4:12795954-12795973 Msa0838410:CDS 30.0%
! TAAGACAATTTAGATGGGTT+TGG + chr5_4:12796202-12796221 None:intergenic 30.0%
AATAGATGCACAAATTTAGC+TGG - chr5_4:12796417-12796436 Msa0838410:intron 30.0%
AAATAAGGAGGCAAAATGAT+TGG - chr5_4:12796634-12796653 Msa0838410:intron 30.0%
AATAAGGAGGCAAAATGATT+GGG - chr5_4:12796635-12796654 Msa0838410:intron 30.0%
TAAATTCTCGTGAGACATTT+AGG - chr5_4:12797041-12797060 Msa0838410:intron 30.0%
GGATAACATGATTGTTGAAT+AGG - chr5_4:12797062-12797081 Msa0838410:intron 30.0%
!! TGTTTTCATTTTTAGAGGGA+GGG + chr5_4:12797140-12797159 None:intergenic 30.0%
!! CCTTCTGTTTTCATTTTTAG+AGG + chr5_4:12797145-12797164 None:intergenic 30.0%
! CCTCTAAAAATGAAAACAGA+AGG - chr5_4:12797142-12797161 Msa0838410:CDS 30.0%
!! AGATTTTAAAAAGCAGCTGA+GGG + chr5_4:12797317-12797336 None:intergenic 30.0%
!!! TCAGCTGCTTTTTAAAATCT+GGG - chr5_4:12797317-12797336 Msa0838410:CDS 30.0%
! TTTTATATCTCTCTTCCACA+CGG - chr5_4:12797697-12797716 Msa0838410:five_prime_UTR 30.0%
AAAATTGCATTAATACCGTG+TGG + chr5_4:12797715-12797734 None:intergenic 30.0%
! GGATGCTAGTTACGATTTTA+CGG + chr5_4:12792264-12792283 None:intergenic 35.0%
GAAAGATTGCAATAACGCTT+TGG + chr5_4:12792285-12792304 None:intergenic 35.0%
! CGATTAGATCGCACAATTTT+TGG - chr5_4:12792403-12792422 Msa0838410:three_prime_UTR 35.0%
GAGAGAAAATGTGGTAGATT+AGG + chr5_4:12792432-12792451 None:intergenic 35.0%
! ATCTCTGATAACGCAGATAA+CGG - chr5_4:12792751-12792770 Msa0838410:three_prime_UTR 35.0%
GGACAAATCATTGAAATCGT+AGG + chr5_4:12793020-12793039 None:intergenic 35.0%
GAAGTGAATTTCAGTAGGTT+AGG - chr5_4:12793164-12793183 Msa0838410:CDS 35.0%
TAGGATCAGTATGTATTGCA+TGG - chr5_4:12793183-12793202 Msa0838410:CDS 35.0%
TTCATTGTAACCACAAGTGT+CGG - chr5_4:12793414-12793433 Msa0838410:intron 35.0%
ATAGCATTTCACAATCCATC+AGG + chr5_4:12793679-12793698 None:intergenic 35.0%
!! TGTTGTGTTTGATTGGTTTC+TGG + chr5_4:12793889-12793908 None:intergenic 35.0%
TCAAATGCATCTTCTAATGG+GGG - chr5_4:12793911-12793930 Msa0838410:intron 35.0%
TCATTTAGACATCGTAATGG+TGG - chr5_4:12794118-12794137 Msa0838410:intron 35.0%
!! AGAGATGGCCTTATAATTCT+TGG + chr5_4:12794265-12794284 None:intergenic 35.0%
TGAATGAATGGTGCAGAATT+AGG + chr5_4:12794292-12794311 None:intergenic 35.0%
ACACCTCTTAGTGAATCTAT+CGG + chr5_4:12794472-12794491 None:intergenic 35.0%
CAATGCCTCTTTATTATGCA+GGG - chr5_4:12794506-12794525 Msa0838410:intron 35.0%
!! ATTGCTTTTATGTGAGAGAG+AGG - chr5_4:12794792-12794811 Msa0838410:intron 35.0%
!! TTGCTTTTATGTGAGAGAGA+GGG - chr5_4:12794793-12794812 Msa0838410:intron 35.0%
AACAAGTGGCTTCCATTAAA+AGG + chr5_4:12794951-12794970 None:intergenic 35.0%
!!! AATTTTGGTGCTTCTTGGAA+AGG - chr5_4:12794975-12794994 Msa0838410:intron 35.0%
AATATAACTATGCAGCCATG+GGG + chr5_4:12795125-12795144 None:intergenic 35.0%
CAATATAACTATGCAGCCAT+GGG + chr5_4:12795126-12795145 None:intergenic 35.0%
CAGTTCTATTTGAGGAATCT+GGG - chr5_4:12795272-12795291 Msa0838410:CDS 35.0%
!!! GAAGTTGTTTTAGTGTCTTG+AGG - chr5_4:12795368-12795387 Msa0838410:intron 35.0%
!!! CAGGAAATTCTTTTAAGGCA+AGG - chr5_4:12795411-12795430 Msa0838410:intron 35.0%
TCTGTAATCCGTATCTTGTT+TGG - chr5_4:12795471-12795490 Msa0838410:CDS 35.0%
TGGATATTGTTTGGTTGTGT+TGG - chr5_4:12795553-12795572 Msa0838410:CDS 35.0%
! ACTCATGTTTTTCCAGTCAA+GGG + chr5_4:12795608-12795627 None:intergenic 35.0%
! AACTCATGTTTTTCCAGTCA+AGG + chr5_4:12795609-12795628 None:intergenic 35.0%
GACAACAGTGATGCTTAATA+TGG + chr5_4:12795774-12795793 None:intergenic 35.0%
! AGTGTCGGACATAATTATGA+TGG + chr5_4:12796037-12796056 None:intergenic 35.0%
ATCATAATTATGTCCGACAC+TGG - chr5_4:12796036-12796055 Msa0838410:CDS 35.0%
!! GTAATACCTGCTTCAAGTTT+TGG - chr5_4:12796097-12796116 Msa0838410:CDS 35.0%
TACAAACCAAAACTTGAAGC+AGG + chr5_4:12796106-12796125 None:intergenic 35.0%
TATAGGGAGACAAAATAAGG+AGG - chr5_4:12796622-12796641 Msa0838410:intron 35.0%
GTAACATTAGGAAACTGAAC+AGG + chr5_4:12796681-12796700 None:intergenic 35.0%
ACTTCAGGACTTGTAACATT+AGG + chr5_4:12796693-12796712 None:intergenic 35.0%
! AAGTCCTGAAGTGTTAAATC+AGG - chr5_4:12796701-12796720 Msa0838410:intron 35.0%
ATGTCCTGATTTAACACTTC+AGG + chr5_4:12796708-12796727 None:intergenic 35.0%
CTGGAGACAACTATATATGA+TGG - chr5_4:12796756-12796775 Msa0838410:intron 35.0%
! ACAACTATATATGATGGTGC+AGG - chr5_4:12796762-12796781 Msa0838410:intron 35.0%
GAATTATCTGGTAGAACAAC+TGG + chr5_4:12796792-12796811 None:intergenic 35.0%
CTCTCAACTAGTGAAATTAC+TGG - chr5_4:12796855-12796874 Msa0838410:intron 35.0%
!!! AGGCACTTCGGTTTTTTTTT+TGG - chr5_4:12796943-12796962 Msa0838410:intron 35.0%
!!! GGCACTTCGGTTTTTTTTTT+GGG - chr5_4:12796944-12796963 Msa0838410:intron 35.0%
!! TTTTCATTTTTAGAGGGAGG+GGG + chr5_4:12797138-12797157 None:intergenic 35.0%
!! GTTTTCATTTTTAGAGGGAG+GGG + chr5_4:12797139-12797158 None:intergenic 35.0%
!! CTGTTTTCATTTTTAGAGGG+AGG + chr5_4:12797141-12797160 None:intergenic 35.0%
!! ATGTATGTTCTTAGCCTTAG+AGG - chr5_4:12797234-12797253 Msa0838410:CDS 35.0%
! GTTTTGCTTGCTTGAATTTG+CGG - chr5_4:12797260-12797279 Msa0838410:CDS 35.0%
! TTGAATTTGCGGAGGAATTT+TGG - chr5_4:12797271-12797290 Msa0838410:CDS 35.0%
!! GATTTTAAAAAGCAGCTGAG+GGG + chr5_4:12797316-12797335 None:intergenic 35.0%
!! CAGATTTTAAAAAGCAGCTG+AGG + chr5_4:12797318-12797337 None:intergenic 35.0%
!!! CTCAGCTGCTTTTTAAAATC+TGG - chr5_4:12797316-12797335 Msa0838410:CDS 35.0%
!!! CAGCTGCTTTTTAAAATCTG+GGG - chr5_4:12797318-12797337 Msa0838410:CDS 35.0%
ATGTCATTCCAGACAAGAAA+AGG + chr5_4:12797521-12797540 None:intergenic 35.0%
! GATTTTACGGAAAAGCCCTT+TGG + chr5_4:12792251-12792270 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAGA+AGG + chr5_4:12792372-12792391 None:intergenic 40.0%
AATCGCAGGGAATAATGAAG+AGG + chr5_4:12792388-12792407 None:intergenic 40.0%
AATTGTGCGATCTAATCGCA+GGG + chr5_4:12792401-12792420 None:intergenic 40.0%
AAATTGTGCGATCTAATCGC+AGG + chr5_4:12792402-12792421 None:intergenic 40.0%
! TGAAGGTGTGAGAGAAAATG+TGG + chr5_4:12792441-12792460 None:intergenic 40.0%
GTTATCGGAGGAATGATTAG+GGG + chr5_4:12792587-12792606 None:intergenic 40.0%
GGTTATCGGAGGAATGATTA+GGG + chr5_4:12792588-12792607 None:intergenic 40.0%
AGGTTATCGGAGGAATGATT+AGG + chr5_4:12792589-12792608 None:intergenic 40.0%
ACGACGTGATTGAAGGTTAT+CGG + chr5_4:12792602-12792621 None:intergenic 40.0%
TCAAGTAGTTCGTGGTGAAT+CGG - chr5_4:12792636-12792655 Msa0838410:three_prime_UTR 40.0%
AGATTCCTCCGATGAAGAAA+CGG + chr5_4:12792683-12792702 None:intergenic 40.0%
! TTTTCCGATTGTAACTGCTC+CGG - chr5_4:12792702-12792721 Msa0838410:three_prime_UTR 40.0%
! ATGGATCTTCTGTTTCTCCA+TGG - chr5_4:12792938-12792957 Msa0838410:three_prime_UTR 40.0%
ACTGTTATGAACCACTGACA+TGG - chr5_4:12793254-12793273 Msa0838410:CDS 40.0%
AATATTGATGTCGCCATGTC+TGG + chr5_4:12793373-12793392 None:intergenic 40.0%
CTATACCATGACACTTCTGA+TGG + chr5_4:12793519-12793538 None:intergenic 40.0%
GTGTCATGGTATAGAGTTTC+AGG - chr5_4:12793525-12793544 Msa0838410:intron 40.0%
TGTCTTTGCATAGAGGAAGA+AGG + chr5_4:12793824-12793843 None:intergenic 40.0%
TCCTCTATGCAAAGACAAGT+CGG - chr5_4:12793827-12793846 Msa0838410:intron 40.0%
CTAAATGAATTACGCTGCTG+TGG + chr5_4:12794106-12794125 None:intergenic 40.0%
TCTCACCACCATCATAACTA+TGG - chr5_4:12794163-12794182 Msa0838410:intron 40.0%
CTCACCACCATCATAACTAT+GGG - chr5_4:12794164-12794183 Msa0838410:intron 40.0%
TGTTCCCATAGTTATGATGG+TGG + chr5_4:12794171-12794190 None:intergenic 40.0%
ACCATCATAACTATGGGAAC+AGG - chr5_4:12794170-12794189 Msa0838410:intron 40.0%
ATTCTTGGAGAAACTCTTGG+TGG + chr5_4:12794250-12794269 None:intergenic 40.0%
ATGAATGGTGCAGAATTAGG+AGG + chr5_4:12794289-12794308 None:intergenic 40.0%
!! AATGGTGGTGGATGAATGAA+TGG + chr5_4:12794304-12794323 None:intergenic 40.0%
!! GCATAATAAAGAGGCATTGG+AGG + chr5_4:12794505-12794524 None:intergenic 40.0%
! CCTGCATAATAAAGAGGCAT+TGG + chr5_4:12794508-12794527 None:intergenic 40.0%
CCAATGCCTCTTTATTATGC+AGG - chr5_4:12794505-12794524 Msa0838410:intron 40.0%
! CTATCTTGCTATGCAACTGA+GGG + chr5_4:12794537-12794556 None:intergenic 40.0%
! ACTATCTTGCTATGCAACTG+AGG + chr5_4:12794538-12794557 None:intergenic 40.0%
GTTCCAATAACGCTAATTGC+TGG - chr5_4:12794737-12794756 Msa0838410:intron 40.0%
AAGCCAGCAATTAGCGTTAT+TGG + chr5_4:12794743-12794762 None:intergenic 40.0%
GCAATATAACTATGCAGCCA+TGG + chr5_4:12795127-12795146 None:intergenic 40.0%
! TTTGAAATAGGTAGGGTGCT+AGG + chr5_4:12795154-12795173 None:intergenic 40.0%
GCAGTTCTATTTGAGGAATC+TGG - chr5_4:12795271-12795290 Msa0838410:CDS 40.0%
AAAACGTGAAACATGCCTAC+TGG - chr5_4:12795514-12795533 Msa0838410:CDS 40.0%
AAACGTGAAACATGCCTACT+GGG - chr5_4:12795515-12795534 Msa0838410:CDS 40.0%
! AGATTTTCATGGTGCACTCT+TGG + chr5_4:12795896-12795915 None:intergenic 40.0%
TGAAAATATTTCCGTCTGCC+AGG - chr5_4:12796274-12796293 Msa0838410:intron 40.0%
TGCAATTCGAACTTCATCTG+TGG - chr5_4:12796334-12796353 Msa0838410:intron 40.0%
GGCAAAATGATTGGGAGAAA+TGG - chr5_4:12796643-12796662 Msa0838410:intron 40.0%
TTAGGAAACTGAACAGGAGA+AGG + chr5_4:12796675-12796694 None:intergenic 40.0%
GCAAATGCACAATATTGCTC+TGG - chr5_4:12796737-12796756 Msa0838410:intron 40.0%
! ACTATATATGATGGTGCAGG+AGG - chr5_4:12796765-12796784 Msa0838410:intron 40.0%
! GGTGTATGCTCTGAATTATC+TGG + chr5_4:12796804-12796823 None:intergenic 40.0%
!! ACTGGTCAAGTTGACATTCA+TGG - chr5_4:12796873-12796892 Msa0838410:intron 40.0%
GCTCAGATTTCTCTACTTCA+AGG - chr5_4:12796895-12796914 Msa0838410:intron 40.0%
GTGTCCTCCTTAACTCTTAT+GGG + chr5_4:12796972-12796991 None:intergenic 40.0%
AGTGTCCTCCTTAACTCTTA+TGG + chr5_4:12796973-12796992 None:intergenic 40.0%
ATAAGAGTTAAGGAGGACAC+TGG - chr5_4:12796972-12796991 Msa0838410:intron 40.0%
ATTATCTCAGTCTTTGCACG+TGG - chr5_4:12797008-12797027 Msa0838410:intron 40.0%
ATCACAATAGTCGCATCACT+AGG + chr5_4:12797192-12797211 None:intergenic 40.0%
!! ATGTTCTTAGCCTTAGAGGA+TGG - chr5_4:12797238-12797257 Msa0838410:CDS 40.0%
AAAAAGCTCTTGAAACCGGT+GGG + chr5_4:12797351-12797370 None:intergenic 40.0%
TAAAAAGCTCTTGAAACCGG+TGG + chr5_4:12797352-12797371 None:intergenic 40.0%
! TTCTGAGGGAAGAGGAAATA+TGG - chr5_4:12797424-12797443 Msa0838410:CDS 40.0%
GAGGAAATATGGCTTTCTTG+TGG - chr5_4:12797435-12797454 Msa0838410:CDS 40.0%
TCAAGCAAGCATCTTTGATG+TGG + chr5_4:12797478-12797497 None:intergenic 40.0%
AAAAGGACGGAATATAGCAG+GGG + chr5_4:12797504-12797523 None:intergenic 40.0%
GAAAAGGACGGAATATAGCA+GGG + chr5_4:12797505-12797524 None:intergenic 40.0%
AGAAAAGGACGGAATATAGC+AGG + chr5_4:12797506-12797525 None:intergenic 40.0%
! TATTCCGTCCTTTTCTTGTC+TGG - chr5_4:12797510-12797529 Msa0838410:five_prime_UTR 40.0%
CATTCCAGACAAGAAAAGGA+CGG + chr5_4:12797517-12797536 None:intergenic 40.0%
TAAGACCTGAAGAAGTTGCA+TGG - chr5_4:12797664-12797683 Msa0838410:five_prime_UTR 40.0%
ACTATCCATGCAACTTCTTC+AGG + chr5_4:12797672-12797691 None:intergenic 40.0%
ACGTGATTGAAGGTTATCGG+AGG + chr5_4:12792599-12792618 None:intergenic 45.0%
CCACGAACTACTTGATTCCA+CGG + chr5_4:12792631-12792650 None:intergenic 45.0%
ATCAGAGATCACTTCAGCAG+AGG + chr5_4:12792740-12792759 None:intergenic 45.0%
! TCTGATAACGCAGATAACGG+AGG - chr5_4:12792754-12792773 Msa0838410:three_prime_UTR 45.0%
GTAAGAGACCTGCTTGGAAT+AGG - chr5_4:12792797-12792816 Msa0838410:three_prime_UTR 45.0%
CGAGCAGAATCAGATAAAGC+AGG + chr5_4:12792880-12792899 None:intergenic 45.0%
GCTTTATCTGATTCTGCTCG+AGG - chr5_4:12792880-12792899 Msa0838410:three_prime_UTR 45.0%
TGCTCGAGGTTCTACGAAAT+CGG - chr5_4:12792894-12792913 Msa0838410:three_prime_UTR 45.0%
!! TCGTCGAAGGGTTTGTTAGA+TGG - chr5_4:12792919-12792938 Msa0838410:three_prime_UTR 45.0%
! ATCTTCTGTTTCTCCATGGC+AGG - chr5_4:12792942-12792961 Msa0838410:three_prime_UTR 45.0%
CAACAGAAACAAACCTGCCA+TGG + chr5_4:12792958-12792977 None:intergenic 45.0%
ATGAAGCACGGACACAAACA+CGG - chr5_4:12793344-12793363 Msa0838410:CDS 45.0%
! TTCTGATTGAAGGCATGTCC+CGG + chr5_4:12793458-12793477 None:intergenic 45.0%
ACCATGACACTTCTGATGGA+AGG + chr5_4:12793515-12793534 None:intergenic 45.0%
ATATATGCACAGGGAGCTGT+AGG - chr5_4:12793619-12793638 Msa0838410:intron 45.0%
! TCCGACTTGTCTTTGCATAG+AGG + chr5_4:12793831-12793850 None:intergenic 45.0%
!! TTGATTGGTTTCTGGCGAGT+TGG + chr5_4:12793881-12793900 None:intergenic 45.0%
GATGCAGCTATCGAAACTTG+GGG + chr5_4:12793956-12793975 None:intergenic 45.0%
CGATGCAGCTATCGAAACTT+GGG + chr5_4:12793957-12793976 None:intergenic 45.0%
CCAAGTTTCGATAGCTGCAT+CGG - chr5_4:12793955-12793974 Msa0838410:intron 45.0%
CAAGTTTCGATAGCTGCATC+GGG - chr5_4:12793956-12793975 Msa0838410:intron 45.0%
! TGTATGGTCTCTGGAAGAAG+AGG + chr5_4:12793990-12794009 None:intergenic 45.0%
CAAATCCACTTCTCTGTGTG+TGG + chr5_4:12794069-12794088 None:intergenic 45.0%
GCCTGTTCCCATAGTTATGA+TGG + chr5_4:12794174-12794193 None:intergenic 45.0%
TCATTCATCCACCACCATTG+CGG - chr5_4:12794305-12794324 Msa0838410:intron 45.0%
ACATACCATGGAATCCCATG+TGG + chr5_4:12794342-12794361 None:intergenic 45.0%
GGAGCTGCAAATAATACCAC+TGG + chr5_4:12794442-12794461 None:intergenic 45.0%
CTTAGTGAATCTATCGGTGG+AGG + chr5_4:12794466-12794485 None:intergenic 45.0%
CCTCTTAGTGAATCTATCGG+TGG + chr5_4:12794469-12794488 None:intergenic 45.0%
CCACCGATAGATTCACTAAG+AGG - chr5_4:12794466-12794485 Msa0838410:intron 45.0%
!! AGAGGCATTGGAGGAACAAA+GGG + chr5_4:12794496-12794515 None:intergenic 45.0%
!! AAGAGGCATTGGAGGAACAA+AGG + chr5_4:12794497-12794516 None:intergenic 45.0%
TCTGGCCCTGCATAATAAAG+AGG + chr5_4:12794514-12794533 None:intergenic 45.0%
TTTATGTGAGAGAGAGGGTG+AGG - chr5_4:12794798-12794817 Msa0838410:intron 45.0%
ATGACAATCCAGCACGACAA+TGG - chr5_4:12795082-12795101 Msa0838410:intron 45.0%
! AATAGGTAGGGTGCTAGGTT+TGG + chr5_4:12795149-12795168 None:intergenic 45.0%
!! GTTGTGTTGGCTTCTGCAAT+AGG - chr5_4:12795566-12795585 Msa0838410:CDS 45.0%
! TGCAATAGGTGCCTTTTGTC+AGG - chr5_4:12795580-12795599 Msa0838410:CDS 45.0%
TGTCAGTCAAATCCATGACC+TGG + chr5_4:12796295-12796314 None:intergenic 45.0%
TTCATCTGTGGTTGAAGTGC+AGG - chr5_4:12796346-12796365 Msa0838410:intron 45.0%
TCAGAGCATACACCTGCATT+TGG - chr5_4:12796810-12796829 Msa0838410:intron 45.0%
CAGAGCATACACCTGCATTT+GGG - chr5_4:12796811-12796830 Msa0838410:intron 45.0%
AGAGCATACACCTGCATTTG+GGG - chr5_4:12796812-12796831 Msa0838410:intron 45.0%
TCACTAGTTGAGAGCTGCAA+TGG + chr5_4:12796849-12796868 None:intergenic 45.0%
TTAGAGCTGCAAACGTGCTT+AGG - chr5_4:12796923-12796942 Msa0838410:intron 45.0%
TTGGGAGCCCATAAGAGTTA+AGG - chr5_4:12796962-12796981 Msa0838410:intron 45.0%
GCAAGCAAAACCATCCTCTA+AGG + chr5_4:12797251-12797270 None:intergenic 45.0%
TTGCTTGCTTGAATTTGCGG+AGG - chr5_4:12797263-12797282 Msa0838410:CDS 45.0%
AGCATCTTTGATGTGGTCCT+AGG + chr5_4:12797471-12797490 None:intergenic 45.0%
!!! CCAGCGTGCACAATTTTTTC+GGG + chr5_4:12797635-12797654 None:intergenic 45.0%
!!! CCCAGCGTGCACAATTTTTT+CGG + chr5_4:12797636-12797655 None:intergenic 45.0%
CCGAAAAAATTGTGCACGCT+GGG - chr5_4:12797633-12797652 Msa0838410:five_prime_UTR 45.0%
CGAAAAAATTGTGCACGCTG+GGG - chr5_4:12797634-12797653 Msa0838410:five_prime_UTR 45.0%
!! AACAAATAATTAAAATTAAA+AGG + chr5_4:12795722-12795741 None:intergenic 5.0%
!!! TCTTTATTTATTTATATTAT+AGG - chr5_4:12796605-12796624 Msa0838410:intron 5.0%
!!! CTTTATTTATTTATATTATA+GGG - chr5_4:12796606-12796625 Msa0838410:intron 5.0%
CGGAGGAATGATTAGGGGAA+TGG + chr5_4:12792582-12792601 None:intergenic 50.0%
CGAACTACTTGATTCCACGG+CGG + chr5_4:12792628-12792647 None:intergenic 50.0%
CCGTGGAATCAAGTAGTTCG+TGG - chr5_4:12792628-12792647 Msa0838410:three_prime_UTR 50.0%
CATTCCCGCCGTTTCTTCAT+CGG - chr5_4:12792672-12792691 Msa0838410:three_prime_UTR 50.0%
TTCCTCCGATGAAGAAACGG+CGG + chr5_4:12792680-12792699 None:intergenic 50.0%
TCCACCGGAGCAGTTACAAT+CGG + chr5_4:12792709-12792728 None:intergenic 50.0%
GCAGAGGTAGAATCATCCAC+CGG + chr5_4:12792724-12792743 None:intergenic 50.0%
! GTACTGGTAAGAGACCTGCT+TGG - chr5_4:12792791-12792810 Msa0838410:three_prime_UTR 50.0%
CCTGCTTGGAATAGGTCTTC+CGG - chr5_4:12792805-12792824 Msa0838410:three_prime_UTR 50.0%
TGGAATAGGTCTTCCGGCAA+TGG - chr5_4:12792811-12792830 Msa0838410:three_prime_UTR 50.0%
AATAGGTCTTCCGGCAATGG+CGG - chr5_4:12792814-12792833 Msa0838410:three_prime_UTR 50.0%
TACGAAATCGGAGTCGTCGA+AGG - chr5_4:12792906-12792925 Msa0838410:three_prime_UTR 50.0%
ACGAAATCGGAGTCGTCGAA+GGG - chr5_4:12792907-12792926 Msa0838410:three_prime_UTR 50.0%
ATGTCGTGTGTCCATGTCAG+TGG + chr5_4:12793268-12793287 None:intergenic 50.0%
GATGCTTCGGCTATGAAGCA+CGG - chr5_4:12793332-12793351 Msa0838410:CDS 50.0%
ACAAACACGGACACCAGACA+TGG - chr5_4:12793357-12793376 Msa0838410:CDS 50.0%
TGACACAACACCGACACTTG+TGG + chr5_4:12793427-12793446 None:intergenic 50.0%
GCATGGACGCTTCTGATTGA+AGG + chr5_4:12793468-12793487 None:intergenic 50.0%
!! GCCTTCCATCAGAAGTGTCA+TGG - chr5_4:12793511-12793530 Msa0838410:intron 50.0%
TCCATCAGGTCGCAAAGACA+TGG + chr5_4:12793665-12793684 None:intergenic 50.0%
CCGATGCAGCTATCGAAACT+TGG + chr5_4:12793958-12793977 None:intergenic 50.0%
GGAAGACTGTGTATGGTCTC+TGG + chr5_4:12793999-12794018 None:intergenic 50.0%
! GGTCTCTGGAAGACTGTGTA+TGG + chr5_4:12794006-12794025 None:intergenic 50.0%
CTTCTCTGTGTGTGGTCTCT+GGG + chr5_4:12794061-12794080 None:intergenic 50.0%
ACTTCTCTGTGTGTGGTCTC+TGG + chr5_4:12794062-12794081 None:intergenic 50.0%
AGAGACCACACACAGAGAAG+TGG - chr5_4:12794061-12794080 Msa0838410:intron 50.0%
GCAGAATTAGGAGGCAGAGA+TGG + chr5_4:12794280-12794299 None:intergenic 50.0%
AATCCCATGTGGCCACCAAA+AGG + chr5_4:12794331-12794350 None:intergenic 50.0%
TTCAGAACTAGCTGCTCCAG+TGG - chr5_4:12794423-12794442 Msa0838410:intron 50.0%
AGTGAATCTATCGGTGGAGG+TGG + chr5_4:12794463-12794482 None:intergenic 50.0%
TTGCTATGCAACTGAGGGTC+TGG + chr5_4:12794532-12794551 None:intergenic 50.0%
CGGAAGAATATGGATGCCCA+GGG - chr5_4:12794710-12794729 Msa0838410:intron 50.0%
GGTGCTTCTTGGAAAGGATC+AGG - chr5_4:12794981-12795000 Msa0838410:intron 50.0%
ATGCTACACCATTGTCGTGC+TGG + chr5_4:12795093-12795112 None:intergenic 50.0%
TAGCATGTGTTGTCTCCCCA+TGG - chr5_4:12795107-12795126 Msa0838410:intron 50.0%
AGTCAAGGGAGCCTGACAAA+AGG + chr5_4:12795594-12795613 None:intergenic 50.0%
! TTTTGTCAGGCTCCCTTGAC+TGG - chr5_4:12795593-12795612 Msa0838410:intron 50.0%
TATTTCCGTCTGCCAGGTCA+TGG - chr5_4:12796280-12796299 Msa0838410:intron 50.0%
CAAATCCATGACCTGGCAGA+CGG + chr5_4:12796288-12796307 None:intergenic 50.0%
GTGCTCAAATCCCCAAATGC+AGG + chr5_4:12796825-12796844 None:intergenic 50.0%
GCAAACGTGCTTAGGCACTT+CGG - chr5_4:12796931-12796950 Msa0838410:intron 50.0%
GGAGCCCATAAGAGTTAAGG+AGG - chr5_4:12796965-12796984 Msa0838410:intron 50.0%
! ATAGCTACCTGCTGCTTCTG+AGG - chr5_4:12797409-12797428 Msa0838410:CDS 50.0%
! TAGCTACCTGCTGCTTCTGA+GGG - chr5_4:12797410-12797429 Msa0838410:CDS 50.0%
CCCGAAAAAATTGTGCACGC+TGG - chr5_4:12797632-12797651 Msa0838410:five_prime_UTR 50.0%
GCGGAAGACGACGTGATTGA+AGG + chr5_4:12792609-12792628 None:intergenic 55.0%
TGAAGAAACGGCGGGAATGG+CGG + chr5_4:12792671-12792690 None:intergenic 55.0%
CGATGAAGAAACGGCGGGAA+TGG + chr5_4:12792674-12792693 None:intergenic 55.0%
TCCTCCGATGAAGAAACGGC+GGG + chr5_4:12792679-12792698 None:intergenic 55.0%
TCCGATTGTAACTGCTCCGG+TGG - chr5_4:12792705-12792724 Msa0838410:three_prime_UTR 55.0%
!! GATAACGGAGGTGAGCGCAA+CGG - chr5_4:12792766-12792785 Msa0838410:three_prime_UTR 55.0%
CCGGAAGACCTATTCCAAGC+AGG + chr5_4:12792808-12792827 None:intergenic 55.0%
! TTCCGGCAATGGCGGAGTTT+CGG - chr5_4:12792822-12792841 Msa0838410:three_prime_UTR 55.0%
!! GTGTTGTGTCACCGACTCAC+CGG - chr5_4:12793436-12793455 Msa0838410:intron 55.0%
!! TGTTGTGTCACCGACTCACC+GGG - chr5_4:12793437-12793456 Msa0838410:intron 55.0%
GCGTCCATGCAACAGTGTGT+CGG - chr5_4:12793478-12793497 Msa0838410:intron 55.0%
GAGTCCGACACACTGTTGCA+TGG + chr5_4:12793485-12793504 None:intergenic 55.0%
GCCATGTCTTTGCGACCTGA+TGG - chr5_4:12793661-12793680 Msa0838410:intron 55.0%
TGGAGACTGTGCATGGTCTC+TGG + chr5_4:12794020-12794039 None:intergenic 55.0%
GGTCTCTTGGAGACTGTGCA+TGG + chr5_4:12794027-12794046 None:intergenic 55.0%
GGAGACTGTGTGTGGTCTCT+TGG + chr5_4:12794040-12794059 None:intergenic 55.0%
CGCTGCTGTGGATGATCACT+TGG + chr5_4:12794094-12794113 None:intergenic 55.0%
AATGGTGGTCCACATCAGCG+TGG - chr5_4:12794133-12794152 Msa0838410:intron 55.0%
GAACCATCTCCACGCTGATG+TGG + chr5_4:12794145-12794164 None:intergenic 55.0%
GGAACAGGCGTGATCAAGAC+TGG - chr5_4:12794185-12794204 Msa0838410:intron 55.0%
GCGGAAGAATATGGATGCCC+AGG - chr5_4:12794709-12794728 Msa0838410:intron 55.0%
AGAATATGGATGCCCAGGGC+TGG - chr5_4:12794714-12794733 Msa0838410:intron 55.0%
GAATATGGATGCCCAGGGCT+GGG - chr5_4:12794715-12794734 Msa0838410:intron 55.0%
CGTTATTGGAACCCAGCCCT+GGG + chr5_4:12794729-12794748 None:intergenic 55.0%
TATGTCCGACACTGGCGAGA+TGG - chr5_4:12796044-12796063 Msa0838410:CDS 55.0%
CAGTTCCATCTCGCCAGTGT+CGG + chr5_4:12796052-12796071 None:intergenic 55.0%
GAGTTAAGGAGGACACTGGC+AGG - chr5_4:12796976-12796995 Msa0838410:intron 55.0%
AAAAGCAGCTGAGGGGCAGT+CGG + chr5_4:12797309-12797328 None:intergenic 55.0%
TGTTGTGTGCGTGCGTGCGT+GGG + chr5_4:12792334-12792353 None:intergenic 60.0%
TTGTTGTGTGCGTGCGTGCG+TGG + chr5_4:12792335-12792354 None:intergenic 60.0%
AATCACGTCGTCTTCCGCCG+TGG - chr5_4:12792611-12792630 Msa0838410:three_prime_UTR 60.0%
TCCCGCCGTTTCTTCATCGG+AGG - chr5_4:12792675-12792694 Msa0838410:three_prime_UTR 60.0%
CTCCGAAACTCCGCCATTGC+CGG + chr5_4:12792827-12792846 None:intergenic 60.0%
CGGAGTTTCGGAGGTTCAGC+CGG - chr5_4:12792834-12792853 Msa0838410:three_prime_UTR 60.0%
TTCGGAGGTTCAGCCGGTGA+TGG - chr5_4:12792840-12792859 Msa0838410:three_prime_UTR 60.0%
CACGAGCGTGCATCCATCAC+CGG + chr5_4:12792856-12792875 None:intergenic 60.0%
! GAAGGCATGTCCCGGTGAGT+CGG + chr5_4:12793450-12793469 None:intergenic 60.0%
! GGTCTCTGGGAGACTGTGTG+TGG + chr5_4:12794048-12794067 None:intergenic 60.0%
GGTCCACATCAGCGTGGAGA+TGG - chr5_4:12794139-12794158 Msa0838410:intron 60.0%
CCAAAAGGCCGCAATGGTGG+TGG + chr5_4:12794316-12794335 None:intergenic 60.0%
! CCACCACCATTGCGGCCTTT+TGG - chr5_4:12794313-12794332 Msa0838410:intron 60.0%
CCACCAAAAGGCCGCAATGG+TGG + chr5_4:12794319-12794338 None:intergenic 60.0%
! CCACCATTGCGGCCTTTTGG+TGG - chr5_4:12794316-12794335 Msa0838410:intron 60.0%
TGGCCACCAAAAGGCCGCAA+TGG + chr5_4:12794322-12794341 None:intergenic 60.0%
!! CGGCCTTTTGGTGGCCACAT+GGG - chr5_4:12794325-12794344 Msa0838410:intron 60.0%
GGTGGCCACATGGGATTCCA+TGG - chr5_4:12794334-12794353 Msa0838410:intron 60.0%
GCGTTATTGGAACCCAGCCC+TGG + chr5_4:12794730-12794749 None:intergenic 60.0%
CGACACTGGCGAGATGGAAC+TGG - chr5_4:12796050-12796069 Msa0838410:CDS 60.0%
AAAGCAGCTGAGGGGCAGTC+GGG + chr5_4:12797308-12797327 None:intergenic 60.0%
! ATCTGGGGTCAGCTTCCCAC+CGG - chr5_4:12797333-12797352 Msa0838410:CDS 60.0%
CCTCTTCCCTCAGAAGCAGC+AGG + chr5_4:12797419-12797438 None:intergenic 60.0%
! CCTGCTGCTTCTGAGGGAAG+AGG - chr5_4:12797416-12797435 Msa0838410:CDS 60.0%
CTTGTGGCTGCGCTTGTCCT+AGG - chr5_4:12797451-12797470 Msa0838410:exon 60.0%
AACGGAGGTGAGCGCAACGG+TGG - chr5_4:12792769-12792788 Msa0838410:three_prime_UTR 65.0%
GGTGAGCGCAACGGTGGTAC+TGG - chr5_4:12792775-12792794 Msa0838410:three_prime_UTR 65.0%
! CGGCAATGGCGGAGTTTCGG+AGG - chr5_4:12792825-12792844 Msa0838410:three_prime_UTR 65.0%
!! CGGTGATGGATGCACGCTCG+TGG - chr5_4:12792854-12792873 Msa0838410:three_prime_UTR 65.0%
GGGGTGCAGACTGCTGTGTG+TGG + chr5_4:12793937-12793956 None:intergenic 65.0%
!! GCGGCCTTTTGGTGGCCACA+TGG - chr5_4:12794324-12794343 Msa0838410:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12792219 12797811 12792219 ID=Msa0838410;Name=Msa0838410
chr5_4 mRNA 12792219 12797811 12792219 ID=Msa0838410-mRNA-1;Parent=Msa0838410;Name=Msa0838410-mRNA-1;_AED=0.16;_eAED=0.16;_QI=343|1|1|1|1|1|6|885|522
chr5_4 exon 12792219 12793403 12792219 ID=Msa0838410-mRNA-1:exon:5726;Parent=Msa0838410-mRNA-1
chr5_4 exon 12793663 12793734 12793663 ID=Msa0838410-mRNA-1:exon:5725;Parent=Msa0838410-mRNA-1
chr5_4 exon 12795261 12795351 12795261 ID=Msa0838410-mRNA-1:exon:5724;Parent=Msa0838410-mRNA-1
chr5_4 exon 12795449 12795602 12795449 ID=Msa0838410-mRNA-1:exon:5723;Parent=Msa0838410-mRNA-1
chr5_4 exon 12795675 12796224 12795675 ID=Msa0838410-mRNA-1:exon:5722;Parent=Msa0838410-mRNA-1
chr5_4 exon 12797067 12797811 12797067 ID=Msa0838410-mRNA-1:exon:5721;Parent=Msa0838410-mRNA-1
chr5_4 five_prime_UTR 12797469 12797811 12797469 ID=Msa0838410-mRNA-1:five_prime_utr;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12797067 12797468 12797067 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12795675 12796224 12795675 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12795449 12795602 12795449 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12795261 12795351 12795261 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12793663 12793734 12793663 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 CDS 12793104 12793403 12793104 ID=Msa0838410-mRNA-1:cds;Parent=Msa0838410-mRNA-1
chr5_4 three_prime_UTR 12792219 12793103 12792219 ID=Msa0838410-mRNA-1:three_prime_utr;Parent=Msa0838410-mRNA-1
Gene Sequence

>Msa0838410

ATGGAAATGATCGGTAACCATTCCCCTAATCATTCCTCCGATAACCTTCAATCACGTCGTCTTCCGCCGTGGAATCAAGTAGTTCGTGGTGAATCGGAGTCTATCGCCGCCATTCCCGCCGTTTCTTCATCGGAGGAATCTTTTCCGATTGTAACTGCTCCGGTGGATGATTCTACCTCTGCTGAAGTGATCTCTGATAACGCAGATAACGGAGGTGAGCGCAACGGTGGTACTGGTAAGAGACCTGCTTGGAATAGGTCTTCCGGCAATGGCGGAGTTTCGGAGGTTCAGCCGGTGATGGATGCACGCTCGTGGCCTGCTTTATCTGATTCTGCTCGAGGTTCTACGAAATCGGAGTCGTCGAAGGGTTTGTTAGATGGATCTTCTGTTTCTCCATGGCAGGGTATGGAAAGCACACCTTCTTCCTCTATGCAAAGACAAGTCGGAGATAATGTAAATGTAAACAATATGGCACCAACTCGCCAGAAACCAATCAAACACAACAGTTCAAATGCATCTTCTAATGGGGGCCACACACAGCAGTCTGCACCCCAAGTTTCGATAGCTGCATCGGGATCTCACACCTCTTCTTCCAGAGACCATACACAGTCTTCCAGAGACCATGCACAGTCTCCAAGAGACCACACACAGTCTCCCAGAGACCACACACAGAGAAGTGGATTTGTGCCAAGTGATCATCCACAGCAGCGTAATTCATTTAGACATCGTAATGGTGGTCCACATCAGCGTGGAGATGGTTCTCACCACCATCATAACTATGGGAACAGGCGTGATCAAGACTGGAACAATCGTCGAAATTACAATGGTAGAGACATGCACGTGCCACCAAGAGTTTCTCCAAGAATTATAAGGCCATCTCTGCCTCCTAATTCTGCACCATTCATTCATCCACCACCATTGCGGCCTTTTGGTGGCCACATGGGATTCCATGAACTAGCTGCTCCAGTGGTATTATTTGCAGCTCCACCTCCACCGATAGATTCACTAAGAGGTGTTCCCTTTGTTCCTCCAATGCCTCTTTATTATGCAGGGCCAGACCCTCAGTTGCATAGCAAGATAGTCAACCAGATTGACTACTATTTTAGTAATGAAAATTTAGTCAAAGATATATTCTTGCGGAAGAATATGGATGCCCAGGGCTGGGTTCCAATAACGCTAATTGCTGGCTTCAAAAAAGTCATGGATTTGACTGACAATATTCAGCTTATAATAGATGCAATTCGAACTTCATCTGTGGTTGAAGTGCAGGGAGACAAAATAAGGAGGCAAAATGATTGGGAGAAATGGATCATGCCTTCTCCTGTTCAGTTTCCTAATGTTACAAGTCCTGAAGTGTTAAATCAGGACATGCTAGCAGAGCAAATGCACAATATTGCTCTGGAGACAACTATATATGATGGTGCAGGAGGACCAGTTGTTCTACCAGATAATTCAGAGCATACACCTGCATTTGGGGATTTGAGCACTCCATTGCAGCTCTCAACTAGTGAAATTACTGGTCAAGTTGACATTCATGGCTCAGATTTCTCTACTTCAAGGAGAAATTAG
Protein sequence

>Msa0838410

MEMIGNHSPNHSSDNLQSRRLPPWNQVVRGESESIAAIPAVSSSEESFPIVTAPVDDSTSAEVISDNADNGGERNGGTGKRPAWNRSSGNGGVSEVQPVMDARSWPALSDSARGSTKSESSKGLLDGSSVSPWQGMESTPSSSMQRQVGDNVNVNNMAPTRQKPIKHNSSNASSNGGHTQQSAPQVSIAASGSHTSSSRDHTQSSRDHAQSPRDHTQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNNRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAAPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEQMHNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSTPLQLSTSEITGQVDIHGSDFSTSRRN*