Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842500 | XP_003613166.1 | 94.860 | 428 | 1 | 1 | 1 | 407 | 1 | 428 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842500 | sp|O22715|AP1M2_ARATH | 84.579 | 428 | 45 | 1 | 1 | 407 | 1 | 428 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842500 | G7K043 | 94.860 | 428 | 1 | 1 | 1 | 407 | 1 | 428 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0762680 | Msa0842500 | 0.859552 | 3.823233e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842500 | MtrunA17_Chr5g0413081 | 94.860 | 428 | 1 | 1 | 1 | 407 | 1 | 428 | 0.0 | 827 |
| Msa0842500 | MtrunA17_Chr8g0368141 | 88.785 | 428 | 27 | 1 | 1 | 407 | 1 | 428 | 0.0 | 792 |
| Msa0842500 | MtrunA17_Chr5g0400501 | 41.136 | 440 | 221 | 6 | 1 | 405 | 1 | 437 | 5.25e-112 | 335 |
| Msa0842500 | MtrunA17_Chr3g0141861 | 30.474 | 443 | 263 | 9 | 6 | 406 | 3 | 442 | 6.33e-68 | 221 |
| Msa0842500 | MtrunA17_Chr5g0427331 | 30.396 | 454 | 258 | 11 | 6 | 406 | 3 | 451 | 7.57e-66 | 216 |
| Msa0842500 | MtrunA17_Chr7g0271601 | 23.908 | 435 | 267 | 12 | 7 | 405 | 4 | 410 | 1.40e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842500 | AT1G60780.1 | 84.579 | 428 | 45 | 1 | 1 | 407 | 1 | 428 | 0.0 | 768 |
| Msa0842500 | AT1G10730.1 | 80.374 | 428 | 63 | 1 | 1 | 407 | 1 | 428 | 0.0 | 731 |
| Msa0842500 | AT5G46630.1 | 41.136 | 440 | 221 | 5 | 1 | 405 | 1 | 437 | 3.18e-115 | 343 |
| Msa0842500 | AT5G46630.2 | 39.663 | 416 | 213 | 5 | 1 | 381 | 1 | 413 | 4.26e-102 | 310 |
| Msa0842500 | AT4G24550.2 | 28.889 | 450 | 269 | 8 | 6 | 406 | 4 | 451 | 1.23e-68 | 224 |
| Msa0842500 | AT4G24550.3 | 28.698 | 338 | 196 | 5 | 6 | 299 | 4 | 340 | 1.05e-51 | 178 |
| Msa0842500 | AT4G24550.1 | 28.698 | 338 | 196 | 5 | 6 | 299 | 4 | 340 | 1.18e-51 | 177 |
| Msa0842500 | AT1G56590.1 | 25.057 | 439 | 263 | 12 | 7 | 406 | 4 | 415 | 2.51e-33 | 129 |
Find 121 sgRNAs with CRISPR-Local
Find 506 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTCCACCCAAATTAA+AGG | 0.175025 | 5_4:-19650905 | None:intergenic |
| TAGAGAAGTTGGAATTTATT+TGG | 0.187428 | 5_4:+19653904 | Msa0842500:three_prime_UTR |
| TTCAGGTTAAGCCTTTAATT+TGG | 0.191238 | 5_4:+19650894 | Msa0842500:intron |
| TATGAGCTAAGGCTTATTTA+AGG | 0.229610 | 5_4:+19653804 | Msa0842500:CDS |
| GCTTGCGAATTCCTGATTCT+TGG | 0.251938 | 5_4:-19654000 | None:intergenic |
| AAAGAGTCGGATTGAAATTA+TGG | 0.266135 | 5_4:+19650943 | Msa0842500:CDS |
| TGCTTCCTCATCTGTTATAC+TGG | 0.267401 | 5_4:-19651435 | None:intergenic |
| AAAAGCTAGGAGTCAGTTTA+AGG | 0.275911 | 5_4:+19650967 | Msa0842500:CDS |
| TCAAACAGGTGGATGGGGTT+TGG | 0.276922 | 5_4:+19653874 | Msa0842500:three_prime_UTR |
| ATCATGAAGAGAAAGATATT+TGG | 0.291945 | 5_4:-19653927 | None:intergenic |
| CAAACAGGTGGATGGGGTTT+GGG | 0.292884 | 5_4:+19653875 | Msa0842500:three_prime_UTR |
| GAATGTCTAGATATATTAAA+TGG | 0.293243 | 5_4:-19654260 | None:intergenic |
| TGAGCTACTTGATGAAATTA+TGG | 0.307055 | 5_4:+19648811 | Msa0842500:CDS |
| TCAGGTTAAGCCTTTAATTT+GGG | 0.308649 | 5_4:+19650895 | Msa0842500:intron |
| CCCATTGACGTTCGAACATT+AGG | 0.309842 | 5_4:-19651213 | None:intergenic |
| TCGGTGGATCGGATCGGATT+TGG | 0.315760 | 5_4:-19647977 | None:intergenic |
| TAATTAGATCTGACGTTGTT+GGG | 0.329471 | 5_4:+19649136 | Msa0842500:CDS |
| TGAAGAAGACGACGGAGAAT+TGG | 0.342083 | 5_4:-19647931 | None:intergenic |
| TATTGAGAAGAGTGGGTATC+AGG | 0.353475 | 5_4:+19653743 | Msa0842500:CDS |
| GAAGAAGACGACGGAGAATT+GGG | 0.364416 | 5_4:-19647930 | None:intergenic |
| TTGGGACTCTTTAGAGAAGT+TGG | 0.384217 | 5_4:+19653893 | Msa0842500:three_prime_UTR |
| TGGAAAATTCGATCCTTCTC+TGG | 0.388639 | 5_4:+19651273 | Msa0842500:CDS |
| TAAAGTTCACACCAAGAATC+AGG | 0.399034 | 5_4:+19653989 | Msa0842500:three_prime_UTR |
| CACCAAACTCATCGATAAAC+AGG | 0.401786 | 5_4:+19648125 | Msa0842500:CDS |
| TTGAAGATTATTGAGAAGAG+TGG | 0.401908 | 5_4:+19653735 | Msa0842500:CDS |
| TTAGGATTGGTTGCATCAAC+AGG | 0.412796 | 5_4:-19651195 | None:intergenic |
| CTTGATGAAATTATGGACTT+TGG | 0.414029 | 5_4:+19648818 | Msa0842500:CDS |
| TCAAAGGCCGCATCCTCGTC+TGG | 0.420613 | 5_4:+19648055 | Msa0842500:CDS |
| TAAGACTGATGCTTATAGAA+TGG | 0.429934 | 5_4:+19648883 | Msa0842500:CDS |
| AAATGATAGAGTGTTATTAG+AGG | 0.432015 | 5_4:+19650475 | Msa0842500:CDS |
| ATCTCAAATTTCACGCGTAT+AGG | 0.434573 | 5_4:-19651476 | None:intergenic |
| TCCTAATGTTCGAACGTCAA+TGG | 0.438449 | 5_4:+19651212 | Msa0842500:CDS |
| GATCCGGTTGTTTACGATAA+CGG | 0.462375 | 5_4:+19648264 | Msa0842500:CDS |
| TTGGTTGCATCAACAGGAAC+AGG | 0.463558 | 5_4:-19651189 | None:intergenic |
| CCTAATGTTCGAACGTCAAT+GGG | 0.466244 | 5_4:+19651213 | Msa0842500:CDS |
| CGTTCGATTTGATGACATAC+AGG | 0.467708 | 5_4:+19650745 | Msa0842500:CDS |
| ATCTTTGCCTCGGTATATTG+AGG | 0.473686 | 5_4:-19648845 | None:intergenic |
| CAACTACAGCGAATTCAAAC+AGG | 0.479172 | 5_4:+19653860 | Msa0842500:three_prime_UTR |
| ACCACCGCATCATCAATGTC+AGG | 0.484386 | 5_4:+19648003 | Msa0842500:exon |
| CAACTCAATCTCGACATTTG+TGG | 0.490408 | 5_4:-19651166 | None:intergenic |
| TCGGATTTGGAGCAGTGTTA+CGG | 0.492480 | 5_4:-19647964 | None:intergenic |
| GGTATGCCCGAGTGTAAACT+TGG | 0.500011 | 5_4:+19650449 | Msa0842500:CDS |
| GAGTTTGGTGAAGAAACGTT+CGG | 0.502228 | 5_4:-19648112 | None:intergenic |
| CGAATTCAAACAGGTGGATG+GGG | 0.506084 | 5_4:+19653869 | Msa0842500:three_prime_UTR |
| AGTTACTCAAAGACCTCCTA+TGG | 0.508336 | 5_4:+19648907 | Msa0842500:CDS |
| ATTTCTTTCATCCCTCCTGA+TGG | 0.509512 | 5_4:+19650720 | Msa0842500:CDS |
| AACCTGTTTATCGATGAGTT+TGG | 0.510129 | 5_4:-19648127 | None:intergenic |
| ATCAAATCGAACGATCCATC+AGG | 0.513755 | 5_4:-19650735 | None:intergenic |
| GAAGAAACGTTCGGCTTCGA+TGG | 0.521450 | 5_4:-19648103 | None:intergenic |
| ATTCCAGAAACAGTAAAATA+CGG | 0.525326 | 5_4:-19651500 | None:intergenic |
| CTCACTTAAAATCTTTGCCT+CGG | 0.525393 | 5_4:-19648855 | None:intergenic |
| GTGGGTATCAGGCTCTTCCA+TGG | 0.527442 | 5_4:+19653754 | Msa0842500:CDS |
| TGACGTTCGAACATTAGGAT+TGG | 0.528631 | 5_4:-19651208 | None:intergenic |
| AGCGAATTCAAACAGGTGGA+TGG | 0.529530 | 5_4:+19653867 | Msa0842500:three_prime_UTR |
| TTAATTAGATCTGACGTTGT+TGG | 0.530637 | 5_4:+19649135 | Msa0842500:CDS |
| AATATTCTTGTCAATAGCAA+TGG | 0.531888 | 5_4:+19649108 | Msa0842500:CDS |
| GCCGTGTCTTGGCGAAGTGA+AGG | 0.532758 | 5_4:+19648941 | Msa0842500:CDS |
| GCGAATTCAAACAGGTGGAT+GGG | 0.534875 | 5_4:+19653868 | Msa0842500:three_prime_UTR |
| TGAAGATTATTGAGAAGAGT+GGG | 0.536978 | 5_4:+19653736 | Msa0842500:CDS |
| CAAGGGAAAAGCGATAGACT+TGG | 0.539799 | 5_4:+19650514 | Msa0842500:CDS |
| TTGAAATTATGGTAAAAGCT+AGG | 0.542366 | 5_4:+19650954 | Msa0842500:CDS |
| TTTATGAAGGTGTGTCCGGT+TGG | 0.542485 | 5_4:+19650674 | Msa0842500:intron |
| TGATGAACAATCTCAAGATC+CGG | 0.542836 | 5_4:+19648248 | Msa0842500:CDS |
| GGTTAAGCCTTTAATTTGGG+TGG | 0.544300 | 5_4:+19650898 | Msa0842500:intron |
| ACACCGTTATCGTAAACAAC+CGG | 0.544469 | 5_4:-19648267 | None:intergenic |
| CTGTTCCTCCTCGACATCAA+AGG | 0.548111 | 5_4:+19648039 | Msa0842500:CDS |
| CCCTTCACTTCGCCAAGACA+CGG | 0.551825 | 5_4:-19648942 | None:intergenic |
| CGCGGTAGTCACGCCAGACG+AGG | 0.552252 | 5_4:-19648068 | None:intergenic |
| AATTAGATCTGACGTTGTTG+GGG | 0.553267 | 5_4:+19649137 | Msa0842500:CDS |
| ATTTAAACCAAGTTTACACT+CGG | 0.555581 | 5_4:-19650456 | None:intergenic |
| TTGGAGCAGTGTTACGGTGG+TGG | 0.559063 | 5_4:-19647958 | None:intergenic |
| CCGTGTCTTGGCGAAGTGAA+GGG | 0.561959 | 5_4:+19648942 | Msa0842500:CDS |
| TGTACAATGAAGATGACTAA+AGG | 0.564331 | 5_4:-19654210 | None:intergenic |
| AGATACCTTGCCTCCAGAGA+AGG | 0.567243 | 5_4:-19651286 | None:intergenic |
| TTGATGATGCGGTGGTTGAT+CGG | 0.567883 | 5_4:-19647996 | None:intergenic |
| TTGAAAAGCACTCAAAGAGT+CGG | 0.576501 | 5_4:+19650930 | Msa0842500:CDS |
| GACATACAGGCTCAGTACAC+AGG | 0.577294 | 5_4:+19650758 | Msa0842500:CDS |
| CCTCATCTGTTATACTGGGA+AGG | 0.577347 | 5_4:-19651430 | None:intergenic |
| TGGGTATCAGGCTCTTCCAT+GGG | 0.580053 | 5_4:+19653755 | Msa0842500:CDS |
| GGCACAAGGCAGAACAACCA+AGG | 0.585733 | 5_4:+19650496 | Msa0842500:CDS |
| AGTCACGCCAGACGAGGATG+CGG | 0.585775 | 5_4:-19648062 | None:intergenic |
| GTGAGATACATAACAATGGC+GGG | 0.586630 | 5_4:+19653777 | Msa0842500:CDS |
| ATTGTTATGTATCTCACCCA+TGG | 0.588077 | 5_4:-19653771 | None:intergenic |
| GCACAAGGCAGAACAACCAA+GGG | 0.590241 | 5_4:+19650497 | Msa0842500:CDS |
| GCATTAGTCACTGCCATAGG+AGG | 0.590936 | 5_4:-19648920 | None:intergenic |
| GGTTGATCGGTGGATCGGAT+CGG | 0.592381 | 5_4:-19647983 | None:intergenic |
| CCACCGCATCATCAATGTCA+GGG | 0.593019 | 5_4:+19648004 | Msa0842500:exon |
| ACGGCATTAGTCACTGCCAT+AGG | 0.595173 | 5_4:-19648923 | None:intergenic |
| GCTTCCTCATCTGTTATACT+GGG | 0.596982 | 5_4:-19651434 | None:intergenic |
| TCGATCCTTCTCTGGAGGCA+AGG | 0.599270 | 5_4:+19651281 | Msa0842500:CDS |
| AAATCGAACGATCCATCAGG+AGG | 0.615509 | 5_4:-19650732 | None:intergenic |
| CCCTGACATTGATGATGCGG+TGG | 0.617425 | 5_4:-19648004 | None:intergenic |
| GCGGTGGTTGATCGGTGGAT+CGG | 0.620317 | 5_4:-19647988 | None:intergenic |
| AAATTACTATATAAAGACAA+TGG | 0.621155 | 5_4:-19654132 | None:intergenic |
| GAAACGTTCGGCTTCGATGG+CGG | 0.623972 | 5_4:-19648100 | None:intergenic |
| CAGTGACTAATGCCGTGTCT+TGG | 0.625555 | 5_4:+19648930 | Msa0842500:CDS |
| TTCAATAACTTGTTTCCTCG+CGG | 0.627732 | 5_4:+19647886 | Msa0842500:five_prime_UTR |
| ATGATGCGGTGGTTGATCGG+TGG | 0.628890 | 5_4:-19647993 | None:intergenic |
| AAGAAGACGACGGAGAATTG+GGG | 0.629055 | 5_4:-19647929 | None:intergenic |
| CCTTCCCAGTATAACAGATG+AGG | 0.630177 | 5_4:+19651430 | Msa0842500:CDS |
| GGATGCGGCCTTTGATGTCG+AGG | 0.631816 | 5_4:-19648047 | None:intergenic |
| AATAACTTGTTTCCTCGCGG+TGG | 0.632879 | 5_4:+19647889 | Msa0842500:five_prime_UTR |
| TGCCCCTGACATTGATGATG+CGG | 0.635315 | 5_4:-19648007 | None:intergenic |
| TTTAAACCAAGTTTACACTC+GGG | 0.636655 | 5_4:-19650455 | None:intergenic |
| AAAATTCGATCCTTCTCTGG+AGG | 0.641613 | 5_4:+19651276 | Msa0842500:CDS |
| TGGCGGGAGAGTATGAGCTA+AGG | 0.642064 | 5_4:+19653793 | Msa0842500:CDS |
| CTACAGCGAATTCAAACAGG+TGG | 0.650816 | 5_4:+19653863 | Msa0842500:three_prime_UTR |
| GATTTGGAGCAGTGTTACGG+TGG | 0.661435 | 5_4:-19647961 | None:intergenic |
| CACCGCATCATCAATGTCAG+GGG | 0.662861 | 5_4:+19648005 | Msa0842500:exon |
| CTCGTCTGGCGTGACTACCG+CGG | 0.677454 | 5_4:+19648069 | Msa0842500:CDS |
| GGAGTCAGTTTAAGGAACGT+AGG | 0.677567 | 5_4:+19650975 | Msa0842500:CDS |
| TGCGGCCTTTGATGTCGAGG+AGG | 0.677780 | 5_4:-19648044 | None:intergenic |
| TGGTTATCCTCAATATACCG+AGG | 0.679386 | 5_4:+19648838 | Msa0842500:CDS |
| AATCGAACGATCCATCAGGA+GGG | 0.687261 | 5_4:-19650731 | None:intergenic |
| TTGGAGAAAAGGACTACACA+AGG | 0.693619 | 5_4:-19654032 | None:intergenic |
| GGTGAGATACATAACAATGG+CGG | 0.696604 | 5_4:+19653776 | Msa0842500:CDS |
| ATGGGTGAGATACATAACAA+TGG | 0.702359 | 5_4:+19653773 | Msa0842500:CDS |
| AGAGTGTTATTAGAGGCACA+AGG | 0.715426 | 5_4:+19650482 | Msa0842500:CDS |
| ACGACGTCGTTGCCACCGCG+AGG | 0.718150 | 5_4:-19647901 | None:intergenic |
| CGATGGCGGAGACGTCGCCG+CGG | 0.726811 | 5_4:-19648086 | None:intergenic |
| GTGGTGAATGAAGAAGACGA+CGG | 0.782226 | 5_4:-19647939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTAAAAAAATAAA+AGG | + | chr5_4:19652655-19652674 | Msa0842500:intron | 0.0% |
| !!! | AAAAGTATATAAAATTTCAT+GGG | - | chr5_4:19650063-19650082 | None:intergenic | 10.0% |
| !!! | TAAAAGTATATAAAATTTCA+TGG | - | chr5_4:19650064-19650083 | None:intergenic | 10.0% |
| !!! | ATTTTTTTAAAAAAACTGTT+TGG | - | chr5_4:19650139-19650158 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTATTTTTTTTCT+TGG | + | chr5_4:19651027-19651046 | Msa0842500:intron | 10.0% |
| !! | TAAGTGAATATAAAAAAAAT+GGG | - | chr5_4:19652550-19652569 | None:intergenic | 10.0% |
| !! | TTAAGTGAATATAAAAAAAA+TGG | - | chr5_4:19652551-19652570 | None:intergenic | 10.0% |
| !! | TCAAATTATACATAAAATCA+CGG | - | chr5_4:19648200-19648219 | None:intergenic | 15.0% |
| !!! | TATTGTGTTGTTTTAATTTT+TGG | + | chr5_4:19648761-19648780 | Msa0842500:intron | 15.0% |
| !! | TGTATAAATAGAAGAATATA+TGG | + | chr5_4:19649365-19649384 | Msa0842500:intron | 15.0% |
| !! | TTTCTATTAAATCTAATTTC+TGG | + | chr5_4:19649493-19649512 | Msa0842500:intron | 15.0% |
| !! | TTCTATTAAATCTAATTTCT+GGG | + | chr5_4:19649494-19649513 | Msa0842500:intron | 15.0% |
| !!! | AAGTTTAAAATTTACATTTC+TGG | + | chr5_4:19649838-19649857 | Msa0842500:intron | 15.0% |
| !!! | AGTTTAAAATTTACATTTCT+GGG | + | chr5_4:19649839-19649858 | Msa0842500:intron | 15.0% |
| !! | ATAAAATAAATCCTATTAGT+TGG | - | chr5_4:19651139-19651158 | None:intergenic | 15.0% |
| !!! | AATATAAGAAAATCATGTTT+TGG | - | chr5_4:19651538-19651557 | None:intergenic | 15.0% |
| !!! | TTTTCTTATATTCTAAATGT+TGG | + | chr5_4:19651546-19651565 | Msa0842500:intron | 15.0% |
| !!! | TAACATTTTGATTATTTCAA+TGG | + | chr5_4:19651728-19651747 | Msa0842500:intron | 15.0% |
| !! | TGAAAATTTATGAATATCAA+TGG | - | chr5_4:19651810-19651829 | None:intergenic | 15.0% |
| !! | AATATAAAAAAAATGGGAAA+TGG | - | chr5_4:19652544-19652563 | None:intergenic | 15.0% |
| !! | TTTCATAAAAAACAAAAACT+TGG | - | chr5_4:19653312-19653331 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTATGAAACATT+AGG | + | chr5_4:19653316-19653335 | Msa0842500:intron | 15.0% |
| !!! | TTGTTTTTTATGAAACATTA+GGG | + | chr5_4:19653317-19653336 | Msa0842500:intron | 15.0% |
| !!! | TTAGTATGTTTTAATAGTTT+AGG | + | chr5_4:19653507-19653526 | Msa0842500:intron | 15.0% |
| !!! | TTGAAAATTATGCATAATTT+TGG | + | chr5_4:19653582-19653601 | Msa0842500:intron | 15.0% |
| !! | AAATTACTATATAAAGACAA+TGG | - | chr5_4:19654135-19654154 | None:intergenic | 15.0% |
| !!! | GAATTAGTTTTTGTGATTAA+TGG | + | chr5_4:19648441-19648460 | Msa0842500:intron | 20.0% |
| !!! | AAATTTGTGTTTTTTTTTGC+AGG | + | chr5_4:19648474-19648493 | Msa0842500:intron | 20.0% |
| !!! | TTATTTTGAAGAATTAGAAG+AGG | + | chr5_4:19648507-19648526 | Msa0842500:intron | 20.0% |
| !!! | GTTGTTTTAATTTTTGGATT+TGG | + | chr5_4:19648767-19648786 | Msa0842500:intron | 20.0% |
| !! | TATGTTTATGTGTTGTAATT+TGG | + | chr5_4:19649015-19649034 | Msa0842500:intron | 20.0% |
| !!! | ACTTTTCTATTTTTGTATTC+AGG | + | chr5_4:19649059-19649078 | Msa0842500:intron | 20.0% |
| !! | AAATATATAAGAATCAGCTT+AGG | - | chr5_4:19649646-19649665 | None:intergenic | 20.0% |
| !! | TAACTTGGGAATAATTTAAT+GGG | - | chr5_4:19650021-19650040 | None:intergenic | 20.0% |
| !!! | TTAACTTGGGAATAATTTAA+TGG | - | chr5_4:19650022-19650041 | None:intergenic | 20.0% |
| !! | TTAAATTATTCCCAAGTTAA+AGG | + | chr5_4:19650022-19650041 | Msa0842500:intron | 20.0% |
| !!! | GTTTTTTTAAAAAAATACCC+AGG | + | chr5_4:19650143-19650162 | Msa0842500:intron | 20.0% |
| !! | ATCAAATTTAGGTATCAAAA+TGG | - | chr5_4:19651341-19651360 | None:intergenic | 20.0% |
| !! | GATTAATCACAATCAAATTT+AGG | - | chr5_4:19651352-19651371 | None:intergenic | 20.0% |
| !! | TAAAGAGTAAACCATTAATT+TGG | + | chr5_4:19651927-19651946 | Msa0842500:intron | 20.0% |
| !! | TGCAATAAAACATACTAAAA+AGG | + | chr5_4:19652012-19652031 | Msa0842500:intron | 20.0% |
| !! | TCAATTTCAAATTGCAAAAT+AGG | - | chr5_4:19652314-19652333 | None:intergenic | 20.0% |
| !!! | TTCATATTTTGAGCAATAAA+GGG | + | chr5_4:19652934-19652953 | Msa0842500:intron | 20.0% |
| !!! | AACTTATAATTCACACATTT+TGG | - | chr5_4:19653381-19653400 | None:intergenic | 20.0% |
| !! | AATAGTTTAGGTACTAAATT+AGG | + | chr5_4:19653519-19653538 | Msa0842500:intron | 20.0% |
| !! | ATAGTTTAGGTACTAAATTA+GGG | + | chr5_4:19653520-19653539 | Msa0842500:intron | 20.0% |
| !! | AATTTCACAGATATATCATA+CGG | - | chr5_4:19653627-19653646 | None:intergenic | 20.0% |
| !!! | TTTTCTCAACAAAAACATAT+TGG | - | chr5_4:19654054-19654073 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTAATCCTCTTTT+TGG | + | chr5_4:19654076-19654095 | Msa0842500:three_prime_UTR | 20.0% |
| !! | GAATGTCTAGATATATTAAA+TGG | - | chr5_4:19654263-19654282 | None:intergenic | 20.0% |
| !!! | CAATTTTCGCATTTTTTGTT+AGG | + | chr5_4:19648224-19648243 | Msa0842500:intron | 25.0% |
| ! | CATTTCTCAATTCAAACAAA+AGG | - | chr5_4:19648422-19648441 | None:intergenic | 25.0% |
| ! | GATAAGTTACAAGAAAAATG+AGG | + | chr5_4:19648964-19648983 | Msa0842500:CDS | 25.0% |
| ! | AATGAGGTAGTTATTATTAG+AGG | + | chr5_4:19648980-19648999 | Msa0842500:intron | 25.0% |
| !!! | TTTTTGTATTCAGGTTTTCT+TGG | + | chr5_4:19649068-19649087 | Msa0842500:intron | 25.0% |
| ! | AATATTCTTGTCAATAGCAA+TGG | + | chr5_4:19649108-19649127 | Msa0842500:CDS | 25.0% |
| ! | CCTTATTCTATAACATATCA+CGG | - | chr5_4:19649287-19649306 | None:intergenic | 25.0% |
| ! | CGTGATATGTTATAGAATAA+GGG | + | chr5_4:19649285-19649304 | Msa0842500:intron | 25.0% |
| ! | ATAGAAGAATATATGGATAG+AGG | + | chr5_4:19649372-19649391 | Msa0842500:intron | 25.0% |
| !!! | ACAATCTGTTTTTGACTTTT+TGG | + | chr5_4:19649523-19649542 | Msa0842500:intron | 25.0% |
| ! | ATATTGATATGTGTGGTTAT+TGG | + | chr5_4:19649579-19649598 | Msa0842500:intron | 25.0% |
| ! | AACGATATACATTAGAGATT+AGG | + | chr5_4:19649612-19649631 | Msa0842500:intron | 25.0% |
| ! | ACGATATACATTAGAGATTA+GGG | + | chr5_4:19649613-19649632 | Msa0842500:intron | 25.0% |
| ! | TGCAAATGAAATTAGCAATT+TGG | + | chr5_4:19649725-19649744 | Msa0842500:intron | 25.0% |
| ! | ATTGAGAAATCATTATTCCT+GGG | + | chr5_4:19649948-19649967 | Msa0842500:intron | 25.0% |
| ! | GAATAATTTAATGGGAATGA+TGG | - | chr5_4:19650013-19650032 | None:intergenic | 25.0% |
| !! | AAATAACTTCCAATTTTCCT+AGG | + | chr5_4:19650097-19650116 | Msa0842500:intron | 25.0% |
| ! | TTGAATATTCCTAGGAAAAT+TGG | - | chr5_4:19650109-19650128 | None:intergenic | 25.0% |
| ! | GCTCAAAAATTATTATTCCT+AGG | - | chr5_4:19650207-19650226 | None:intergenic | 25.0% |
| ! | ATTTAAACCAAGTTTACACT+CGG | - | chr5_4:19650459-19650478 | None:intergenic | 25.0% |
| !! | AAATGATAGAGTGTTATTAG+AGG | + | chr5_4:19650475-19650494 | Msa0842500:CDS | 25.0% |
| !!! | TAATAAGTTTCTGTTTTGAG+AGG | + | chr5_4:19650800-19650819 | Msa0842500:intron | 25.0% |
| ! | TTGAAATTATGGTAAAAGCT+AGG | + | chr5_4:19650954-19650973 | Msa0842500:CDS | 25.0% |
| ! | TATCAAAATGGATGTTATTG+AGG | - | chr5_4:19651329-19651348 | None:intergenic | 25.0% |
| ! | TTGATTGTGATTAATCAGAT+TGG | + | chr5_4:19651356-19651375 | Msa0842500:intron | 25.0% |
| ! | TGATTGTGATTAATCAGATT+GGG | + | chr5_4:19651357-19651376 | Msa0842500:intron | 25.0% |
| ! | ATTCCAGAAACAGTAAAATA+CGG | - | chr5_4:19651503-19651522 | None:intergenic | 25.0% |
| ! | TCTTATATTCTAAATGTTGG+AGG | + | chr5_4:19651549-19651568 | Msa0842500:intron | 25.0% |
| ! | AATCAAAATGTTAACAGAGA+CGG | - | chr5_4:19651721-19651740 | None:intergenic | 25.0% |
| !!! | TGATTATTTCAATGGATTGA+TGG | + | chr5_4:19651736-19651755 | Msa0842500:intron | 25.0% |
| ! | TAATAGTTTAGGGACTAATT+TGG | - | chr5_4:19651975-19651994 | None:intergenic | 25.0% |
| ! | AATTAGTCCCTAAACTATTA+AGG | + | chr5_4:19651975-19651994 | Msa0842500:intron | 25.0% |
| ! | ATTAGTCCCTAAACTATTAA+GGG | + | chr5_4:19651976-19651995 | Msa0842500:intron | 25.0% |
| ! | AAACTTCATTACAAAAAACC+AGG | - | chr5_4:19652140-19652159 | None:intergenic | 25.0% |
| ! | TTTCGGTTTCTTATGATATT+TGG | + | chr5_4:19652182-19652201 | Msa0842500:intron | 25.0% |
| ! | TTGAAATTGAAGAAGTTACT+AGG | + | chr5_4:19652324-19652343 | Msa0842500:intron | 25.0% |
| ! | TGAAATTGAAGAAGTTACTA+GGG | + | chr5_4:19652325-19652344 | Msa0842500:intron | 25.0% |
| ! | TACAAAAATTTACTCCAACA+AGG | + | chr5_4:19652718-19652737 | Msa0842500:intron | 25.0% |
| !!! | GTTCATATTTTGAGCAATAA+AGG | + | chr5_4:19652933-19652952 | Msa0842500:intron | 25.0% |
| ! | AATCTCATATGTAACTTCTA+GGG | - | chr5_4:19653246-19653265 | None:intergenic | 25.0% |
| ! | TAATCTCATATGTAACTTCT+AGG | - | chr5_4:19653247-19653266 | None:intergenic | 25.0% |
| ! | TTACATATGAGATTATCGAT+TGG | + | chr5_4:19653252-19653271 | Msa0842500:intron | 25.0% |
| ! | GTGAATTATAAGTTTGACAT+AGG | + | chr5_4:19653387-19653406 | Msa0842500:intron | 25.0% |
| !!! | TTTTTCAAGGACAAAATTGA+CGG | + | chr5_4:19653554-19653573 | Msa0842500:intron | 25.0% |
| ! | TAGAGAAGTTGGAATTTATT+TGG | + | chr5_4:19653904-19653923 | Msa0842500:three_prime_UTR | 25.0% |
| ! | ATCATGAAGAGAAAGATATT+TGG | - | chr5_4:19653930-19653949 | None:intergenic | 25.0% |
| ! | ACAAAAACATATTGGAGAAA+AGG | - | chr5_4:19654046-19654065 | None:intergenic | 25.0% |
| TTGAAATTGGATCTGAGAAA+TGG | - | chr5_4:19648163-19648182 | None:intergenic | 30.0% | |
| ! | GTTGAGTGTGAATTTGAAAT+TGG | - | chr5_4:19648176-19648195 | None:intergenic | 30.0% |
| AATTAGAAGAGGAATCACTT+AGG | + | chr5_4:19648518-19648537 | Msa0842500:intron | 30.0% | |
| ATTAGAAGAGGAATCACTTA+GGG | + | chr5_4:19648519-19648538 | Msa0842500:intron | 30.0% | |
| TTCATAGGACAAAATACTTC+GGG | - | chr5_4:19648587-19648606 | None:intergenic | 30.0% | |
| CTTCATAGGACAAAATACTT+CGG | - | chr5_4:19648588-19648607 | None:intergenic | 30.0% | |
| TGAGCTACTTGATGAAATTA+TGG | + | chr5_4:19648811-19648830 | Msa0842500:CDS | 30.0% | |
| CTTGATGAAATTATGGACTT+TGG | + | chr5_4:19648818-19648837 | Msa0842500:CDS | 30.0% | |
| TAAGACTGATGCTTATAGAA+TGG | + | chr5_4:19648883-19648902 | Msa0842500:CDS | 30.0% | |
| GTTTATGTGTTGTAATTTGG+TGG | + | chr5_4:19649018-19649037 | Msa0842500:intron | 30.0% | |
| TTAATTAGATCTGACGTTGT+TGG | + | chr5_4:19649135-19649154 | Msa0842500:CDS | 30.0% | |
| TAATTAGATCTGACGTTGTT+GGG | + | chr5_4:19649136-19649155 | Msa0842500:CDS | 30.0% | |
| ! | TGAAGATGAGAACATTTTTG+AGG | + | chr5_4:19649163-19649182 | Msa0842500:CDS | 30.0% |
| !!! | TTTTGAGATCATCTAGCTTT+TGG | + | chr5_4:19649231-19649250 | Msa0842500:intron | 30.0% |
| ! | GATTGCAACATACAGTTTTA+TGG | + | chr5_4:19649258-19649277 | Msa0842500:intron | 30.0% |
| CCGTGATATGTTATAGAATA+AGG | + | chr5_4:19649284-19649303 | Msa0842500:intron | 30.0% | |
| !! | TGTTAGAGAAGTTTGTTAGT+TGG | + | chr5_4:19649328-19649347 | Msa0842500:intron | 30.0% |
| TCTATTGAAGGGAAAACTAT+TGG | + | chr5_4:19649431-19649450 | Msa0842500:intron | 30.0% | |
| TCTCCTATGTTCCTAATTAA+TGG | + | chr5_4:19649466-19649485 | Msa0842500:intron | 30.0% | |
| CTCCTATGTTCCTAATTAAT+GGG | + | chr5_4:19649467-19649486 | Msa0842500:intron | 30.0% | |
| !! | ATAGAAAGCACCCATTAATT+AGG | - | chr5_4:19649480-19649499 | None:intergenic | 30.0% |
| AAAGTCAAAAACAGATTGTG+AGG | - | chr5_4:19649522-19649541 | None:intergenic | 30.0% | |
| TTGTATCTAGCTGAAATTTG+AGG | + | chr5_4:19649700-19649719 | Msa0842500:intron | 30.0% | |
| TGAAATTAGCAATTTGGACT+TGG | + | chr5_4:19649731-19649750 | Msa0842500:intron | 30.0% | |
| ATTAAACCAATCCATAAGCA+TGG | - | chr5_4:19649787-19649806 | None:intergenic | 30.0% | |
| TTTAATCAGCTAGTACACTT+GGG | + | chr5_4:19649801-19649820 | Msa0842500:intron | 30.0% | |
| ! | TTTACATTTCTGGGAATACA+TGG | + | chr5_4:19649848-19649867 | Msa0842500:intron | 30.0% |
| ! | TTACATTTCTGGGAATACAT+GGG | + | chr5_4:19649849-19649868 | Msa0842500:intron | 30.0% |
| ! | TGATGAATATACCCATTTTC+TGG | + | chr5_4:19649879-19649898 | Msa0842500:intron | 30.0% |
| ! | GATGAATATACCCATTTTCT+GGG | + | chr5_4:19649880-19649899 | Msa0842500:intron | 30.0% |
| CTCAATCTTGTAACAAACAT+GGG | - | chr5_4:19649934-19649953 | None:intergenic | 30.0% | |
| TCTCAATCTTGTAACAAACA+TGG | - | chr5_4:19649935-19649954 | None:intergenic | 30.0% | |
| GATTGAGAAATCATTATTCC+TGG | + | chr5_4:19649947-19649966 | Msa0842500:intron | 30.0% | |
| ATTATTCCCAAGTTAAAGGA+TGG | + | chr5_4:19650026-19650045 | Msa0842500:intron | 30.0% | |
| TTATTCCCAAGTTAAAGGAT+GGG | + | chr5_4:19650027-19650046 | Msa0842500:intron | 30.0% | |
| ATACCCAGGAATATAAAGAA+GGG | - | chr5_4:19650178-19650197 | None:intergenic | 30.0% | |
| CTATTAACCAACATTCATGA+TGG | + | chr5_4:19650377-19650396 | Msa0842500:intron | 30.0% | |
| AAATACTCCATCATGAATGT+TGG | - | chr5_4:19650387-19650406 | None:intergenic | 30.0% | |
| ! | TGAAAACTGACATGTGTTTT+TGG | + | chr5_4:19650410-19650429 | Msa0842500:intron | 30.0% |
| TTTAAACCAAGTTTACACTC+GGG | - | chr5_4:19650458-19650477 | None:intergenic | 30.0% | |
| TCTAATGTTGAACTCTAAGT+GGG | - | chr5_4:19650595-19650614 | None:intergenic | 30.0% | |
| ATCTAATGTTGAACTCTAAG+TGG | - | chr5_4:19650596-19650615 | None:intergenic | 30.0% | |
| !! | GCTAGTTCTAAAATTATGTC+TGG | + | chr5_4:19650648-19650667 | Msa0842500:intron | 30.0% |
| ! | TTATGTCTGGCATTTTATGA+AGG | + | chr5_4:19650661-19650680 | Msa0842500:intron | 30.0% |
| AAAATGCTTTCTCTTTCTGT+GGG | - | chr5_4:19650846-19650865 | None:intergenic | 30.0% | |
| ! | TTCAGGTTAAGCCTTTAATT+TGG | + | chr5_4:19650894-19650913 | Msa0842500:intron | 30.0% |
| ! | TCAGGTTAAGCCTTTAATTT+GGG | + | chr5_4:19650895-19650914 | Msa0842500:intron | 30.0% |
| AAAGAGTCGGATTGAAATTA+TGG | + | chr5_4:19650943-19650962 | Msa0842500:CDS | 30.0% | |
| !!! | TTTTTTTCTTGGCAGAAGAT+TGG | + | chr5_4:19651038-19651057 | Msa0842500:intron | 30.0% |
| !!! | TTTTTTCTTGGCAGAAGATT+GGG | + | chr5_4:19651039-19651058 | Msa0842500:intron | 30.0% |
| TGGTGAAACAAGGATATTTA+GGG | - | chr5_4:19651119-19651138 | None:intergenic | 30.0% | |
| TTGGTGAAACAAGGATATTT+AGG | - | chr5_4:19651120-19651139 | None:intergenic | 30.0% | |
| ! | ATACCGTATTTTACTGTTTC+TGG | + | chr5_4:19651497-19651516 | Msa0842500:CDS | 30.0% |
| !!! | TTTTACTGTTTCTGGAATAC+AGG | + | chr5_4:19651505-19651524 | Msa0842500:CDS | 30.0% |
| !!! | AGGCTATTTTTTTCTGCATT+GGG | + | chr5_4:19651569-19651588 | Msa0842500:intron | 30.0% |
| CCTCTGTCTGATAAAAAATT+GGG | + | chr5_4:19651615-19651634 | Msa0842500:intron | 30.0% | |
| ACACTATACACAATATGCAA+TGG | - | chr5_4:19651690-19651709 | None:intergenic | 30.0% | |
| TAGAATCGAATCGAATCAAT+TGG | + | chr5_4:19651861-19651880 | Msa0842500:intron | 30.0% | |
| GACAAACCCTTAATAGTTTA+GGG | - | chr5_4:19651985-19652004 | None:intergenic | 30.0% | |
| AGACAAACCCTTAATAGTTT+AGG | - | chr5_4:19651986-19652005 | None:intergenic | 30.0% | |
| AAACTAACCAAAGGACTAAA+GGG | - | chr5_4:19652060-19652079 | None:intergenic | 30.0% | |
| TAAACTAACCAAAGGACTAA+AGG | - | chr5_4:19652061-19652080 | None:intergenic | 30.0% | |
| !! | TGAAGGTTTTATAGAGTACA+AGG | - | chr5_4:19652086-19652105 | None:intergenic | 30.0% |
| AGGGAAGAAACAAAAATTGA+AGG | - | chr5_4:19652103-19652122 | None:intergenic | 30.0% | |
| AACCGAAATCATCACATAAT+CGG | - | chr5_4:19652170-19652189 | None:intergenic | 30.0% | |
| ATTTGGTCTGTAATGAATTC+TGG | + | chr5_4:19652199-19652218 | Msa0842500:intron | 30.0% | |
| GAAATTGAAGAAGTTACTAG+GGG | + | chr5_4:19652326-19652345 | Msa0842500:intron | 30.0% | |
| AGTTACATGAGAAATGAAGA+AGG | - | chr5_4:19652810-19652829 | None:intergenic | 30.0% | |
| ! | ACAAAGGTATGAGTAGAAAA+TGG | - | chr5_4:19652867-19652886 | None:intergenic | 30.0% |
| !! | TTACGGTTTTTCGGTTTAAA+CGG | - | chr5_4:19653109-19653128 | None:intergenic | 30.0% |
| ATCTCATATGTAACTTCTAG+GGG | - | chr5_4:19653245-19653264 | None:intergenic | 30.0% | |
| ! | AGAGACTAAATAGATGGATT+GGG | + | chr5_4:19653466-19653485 | Msa0842500:intron | 30.0% |
| ! | GGAGAGAATGATATTTTTCA+AGG | + | chr5_4:19653541-19653560 | Msa0842500:intron | 30.0% |
| AGTAGATGCTTTGATTGATT+TGG | + | chr5_4:19653665-19653684 | Msa0842500:intron | 30.0% | |
| !! | TTTGATTGATTTGGTTGAGA+TGG | + | chr5_4:19653674-19653693 | Msa0842500:intron | 30.0% |
| TTGAAGATTATTGAGAAGAG+TGG | + | chr5_4:19653735-19653754 | Msa0842500:CDS | 30.0% | |
| TGAAGATTATTGAGAAGAGT+GGG | + | chr5_4:19653736-19653755 | Msa0842500:CDS | 30.0% | |
| TATGAGCTAAGGCTTATTTA+AGG | + | chr5_4:19653804-19653823 | Msa0842500:CDS | 30.0% | |
| GTGAATAAAAAGCCAAAAAG+AGG | - | chr5_4:19654091-19654110 | None:intergenic | 30.0% | |
| TGTACAATGAAGATGACTAA+AGG | - | chr5_4:19654213-19654232 | None:intergenic | 30.0% | |
| !! | TTCAATAACTTGTTTCCTCG+CGG | + | chr5_4:19647886-19647905 | Msa0842500:five_prime_UTR | 35.0% |
| AACCTGTTTATCGATGAGTT+TGG | - | chr5_4:19648130-19648149 | None:intergenic | 35.0% | |
| TGATGAACAATCTCAAGATC+CGG | + | chr5_4:19648248-19648267 | Msa0842500:CDS | 35.0% | |
| !! | TAGGGATAACTTTGTTGTTG+TGG | + | chr5_4:19648537-19648556 | Msa0842500:intron | 35.0% |
| ACTAACGTTAGTGTTGTGTT+TGG | - | chr5_4:19648625-19648644 | None:intergenic | 35.0% | |
| CTCACTTAAAATCTTTGCCT+CGG | - | chr5_4:19648858-19648877 | None:intergenic | 35.0% | |
| ! | TGTTGTAATTTGGTGGTTTG+AGG | + | chr5_4:19649025-19649044 | Msa0842500:intron | 35.0% |
| !! | TATTCAGGTTTTCTTGGATG+TGG | + | chr5_4:19649074-19649093 | Msa0842500:intron | 35.0% |
| AATTAGATCTGACGTTGTTG+GGG | + | chr5_4:19649137-19649156 | Msa0842500:CDS | 35.0% | |
| TTGAGATCTACTGCATTTGT+AGG | + | chr5_4:19649203-19649222 | Msa0842500:intron | 35.0% | |
| AAGGGTAATTAGAGTAGTTC+AGG | + | chr5_4:19649303-19649322 | Msa0842500:intron | 35.0% | |
| AGGGTAATTAGAGTAGTTCA+GGG | + | chr5_4:19649304-19649323 | Msa0842500:intron | 35.0% | |
| TAGAGTAGTGACTCTATTGA+AGG | + | chr5_4:19649419-19649438 | Msa0842500:intron | 35.0% | |
| AGAGTAGTGACTCTATTGAA+GGG | + | chr5_4:19649420-19649439 | Msa0842500:intron | 35.0% | |
| CACCCATTAATTAGGAACAT+AGG | - | chr5_4:19649472-19649491 | None:intergenic | 35.0% | |
| TATAAGAATCAGCTTAGGCT+TGG | - | chr5_4:19649641-19649660 | None:intergenic | 35.0% | |
| AATCCATAAGCATGGAGAAT+CGG | - | chr5_4:19649779-19649798 | None:intergenic | 35.0% | |
| GTTTAATCAGCTAGTACACT+TGG | + | chr5_4:19649800-19649819 | Msa0842500:intron | 35.0% | |
| TTAATCAGCTAGTACACTTG+GGG | + | chr5_4:19649802-19649821 | Msa0842500:intron | 35.0% | |
| ATCATTATTCCTGGGTATCA+AGG | + | chr5_4:19649956-19649975 | Msa0842500:intron | 35.0% | |
| ! | TGGGAAGTTATTTCATTCCT+GGG | - | chr5_4:19649984-19650003 | None:intergenic | 35.0% |
| ! | ATGGGAAGTTATTTCATTCC+TGG | - | chr5_4:19649985-19650004 | None:intergenic | 35.0% |
| ! | ATGGGAATGATGGAAGTTAT+GGG | - | chr5_4:19650003-19650022 | None:intergenic | 35.0% |
| ! | AATGGGAATGATGGAAGTTA+TGG | - | chr5_4:19650004-19650023 | None:intergenic | 35.0% |
| ! | ACTTTCCCATCCTTTAACTT+GGG | - | chr5_4:19650035-19650054 | None:intergenic | 35.0% |
| AAGTTAAAGGATGGGAAAGT+GGG | + | chr5_4:19650035-19650054 | Msa0842500:intron | 35.0% | |
| !!! | AAGAAGGGAGTTTTATTCCT+GGG | - | chr5_4:19650163-19650182 | None:intergenic | 35.0% |
| !!! | AAAGAAGGGAGTTTTATTCC+TGG | - | chr5_4:19650164-19650183 | None:intergenic | 35.0% |
| AACTCCCTTCTTTATATTCC+TGG | + | chr5_4:19650171-19650190 | Msa0842500:intron | 35.0% | |
| ACTCCCTTCTTTATATTCCT+GGG | + | chr5_4:19650172-19650191 | Msa0842500:intron | 35.0% | |
| CATACCCAGGAATATAAAGA+AGG | - | chr5_4:19650179-19650198 | None:intergenic | 35.0% | |
| ! | CATATCTGTCAATTTTCTGC+CGG | + | chr5_4:19650287-19650306 | Msa0842500:intron | 35.0% |
| GCTATCTGCAAAATATCTAC+CGG | - | chr5_4:19650309-19650328 | None:intergenic | 35.0% | |
| TTTGGCATATTCTAATGCAG+TGG | + | chr5_4:19650428-19650447 | Msa0842500:intron | 35.0% | |
| !!! | TAAGTTTCTGTTTTGAGAGG+TGG | + | chr5_4:19650803-19650822 | Msa0842500:intron | 35.0% |
| CAAAATGCTTTCTCTTTCTG+TGG | - | chr5_4:19650847-19650866 | None:intergenic | 35.0% | |
| AAGATACGGTACAATCAACA+AGG | - | chr5_4:19650874-19650893 | None:intergenic | 35.0% | |
| ! | TGATTGTACCGTATCTTTTC+AGG | + | chr5_4:19650877-19650896 | Msa0842500:intron | 35.0% |
| AGGCTTAACCTGAAAAGATA+CGG | - | chr5_4:19650888-19650907 | None:intergenic | 35.0% | |
| TTTGCTTCCACCCAAATTAA+AGG | - | chr5_4:19650908-19650927 | None:intergenic | 35.0% | |
| !! | TTGAAAAGCACTCAAAGAGT+CGG | + | chr5_4:19650930-19650949 | Msa0842500:CDS | 35.0% |
| AAAAGCTAGGAGTCAGTTTA+AGG | + | chr5_4:19650967-19650986 | Msa0842500:CDS | 35.0% | |
| ! | TTTTTCTTGGCAGAAGATTG+GGG | + | chr5_4:19651040-19651059 | Msa0842500:intron | 35.0% |
| ! | TTTAGGGCAGTCTAAATTCT+GGG | - | chr5_4:19651103-19651122 | None:intergenic | 35.0% |
| ! | ATTTAGGGCAGTCTAAATTC+TGG | - | chr5_4:19651104-19651123 | None:intergenic | 35.0% |
| ! | TCCTTGTTTCACCAACTAAT+AGG | + | chr5_4:19651125-19651144 | Msa0842500:intron | 35.0% |
| !! | TCCTATTAGTTGGTGAAACA+AGG | - | chr5_4:19651129-19651148 | None:intergenic | 35.0% |
| ! | CAGATCAATGCATCTTTTTC+AGG | - | chr5_4:19651255-19651274 | None:intergenic | 35.0% |
| ! | CTGAAAAAGATGCATTGATC+TGG | + | chr5_4:19651253-19651272 | Msa0842500:CDS | 35.0% |
| CTCCTTTCTTTGATACTTTC+AGG | + | chr5_4:19651382-19651401 | Msa0842500:intron | 35.0% | |
| !! | CTCCTGAAAGTATCAAAGAA+AGG | - | chr5_4:19651387-19651406 | None:intergenic | 35.0% |
| ATCTCAAATTTCACGCGTAT+AGG | - | chr5_4:19651479-19651498 | None:intergenic | 35.0% | |
| !!! | GAGGCTATTTTTTTCTGCAT+TGG | + | chr5_4:19651568-19651587 | Msa0842500:intron | 35.0% |
| GCCTCTGTCTGATAAAAAAT+TGG | + | chr5_4:19651614-19651633 | Msa0842500:intron | 35.0% | |
| !!! | CCCAATTTTTTATCAGACAG+AGG | - | chr5_4:19651618-19651637 | None:intergenic | 35.0% |
| CGAATCGAATCAATTGGTAA+TGG | + | chr5_4:19651867-19651886 | Msa0842500:intron | 35.0% | |
| !! | TTGGTAATGGAAAAGAGAAC+TGG | + | chr5_4:19651880-19651899 | Msa0842500:intron | 35.0% |
| TAGTTCAGGAGCCAAATTAA+TGG | - | chr5_4:19651941-19651960 | None:intergenic | 35.0% | |
| ACAAGGACTAAACTAACCAA+AGG | - | chr5_4:19652069-19652088 | None:intergenic | 35.0% | |
| CTCCGATTATGTGATGATTT+CGG | + | chr5_4:19652165-19652184 | Msa0842500:intron | 35.0% | |
| ATACCAGTGAATCTGCTAAT+CGG | - | chr5_4:19652240-19652259 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCACTCGGTTTCTT+CGG | - | chr5_4:19652380-19652399 | None:intergenic | 35.0% |
| !!! | CGAATGTCATTTTTTGCACT+CGG | - | chr5_4:19652389-19652408 | None:intergenic | 35.0% |
| CGAGTGCAAAAAATGACATT+CGG | + | chr5_4:19652387-19652406 | Msa0842500:intron | 35.0% | |
| GAGTGCAAAAAATGACATTC+GGG | + | chr5_4:19652388-19652407 | Msa0842500:intron | 35.0% | |
| GGATAGAGAATACAAGAGTT+CGG | - | chr5_4:19652523-19652542 | None:intergenic | 35.0% | |
| AGAGTTACACTTATCAGTGA+TGG | + | chr5_4:19652572-19652591 | Msa0842500:intron | 35.0% | |
| GAGTTACACTTATCAGTGAT+GGG | + | chr5_4:19652573-19652592 | Msa0842500:intron | 35.0% | |
| ! | GAATGTTCAAGTTTCCTTGT+TGG | - | chr5_4:19652735-19652754 | None:intergenic | 35.0% |
| TCATCACATGAACAAGACAA+AGG | - | chr5_4:19652883-19652902 | None:intergenic | 35.0% | |
| TGCTCAAAATATGAACGAAG+AGG | - | chr5_4:19652929-19652948 | None:intergenic | 35.0% | |
| !! | CTTCTTACTGGGTTTGATTT+TGG | + | chr5_4:19653026-19653045 | Msa0842500:intron | 35.0% |
| !! | TACGGTTTTTCGGTTTAAAC+GGG | - | chr5_4:19653108-19653127 | None:intergenic | 35.0% |
| ! | CATATGAGATTATCGATTGG+AGG | + | chr5_4:19653255-19653274 | Msa0842500:intron | 35.0% |
| CATCAATTTGACCATTTGGA+TGG | - | chr5_4:19653445-19653464 | None:intergenic | 35.0% | |
| CATCCAAATGGTCAAATTGA+TGG | + | chr5_4:19653443-19653462 | Msa0842500:intron | 35.0% | |
| TCTCCATCAATTTGACCATT+TGG | - | chr5_4:19653449-19653468 | None:intergenic | 35.0% | |
| TGATGGAGAGACTAAATAGA+TGG | + | chr5_4:19653460-19653479 | Msa0842500:intron | 35.0% | |
| GAGAGACTAAATAGATGGAT+TGG | + | chr5_4:19653465-19653484 | Msa0842500:intron | 35.0% | |
| !! | GAGACTAAATAGATGGATTG+GGG | + | chr5_4:19653467-19653486 | Msa0842500:intron | 35.0% |
| !! | TAAATAGATGGATTGGGGAA+TGG | + | chr5_4:19653472-19653491 | Msa0842500:intron | 35.0% |
| CTAAAAGACCAAGACAAACA+TGG | - | chr5_4:19653706-19653725 | None:intergenic | 35.0% | |
| !! | CATGTTTGTCTTGGTCTTTT+AGG | + | chr5_4:19653704-19653723 | Msa0842500:intron | 35.0% |
| ATTGTTATGTATCTCACCCA+TGG | - | chr5_4:19653774-19653793 | None:intergenic | 35.0% | |
| ATGGGTGAGATACATAACAA+TGG | + | chr5_4:19653773-19653792 | Msa0842500:CDS | 35.0% | |
| TAAAGTTCACACCAAGAATC+AGG | + | chr5_4:19653989-19654008 | Msa0842500:three_prime_UTR | 35.0% | |
| ! | GAGTTTGGTGAAGAAACGTT+CGG | - | chr5_4:19648115-19648134 | None:intergenic | 40.0% |
| CACCAAACTCATCGATAAAC+AGG | + | chr5_4:19648125-19648144 | Msa0842500:CDS | 40.0% | |
| GATCCGGTTGTTTACGATAA+CGG | + | chr5_4:19648264-19648283 | Msa0842500:CDS | 40.0% | |
| ACACCGTTATCGTAAACAAC+CGG | - | chr5_4:19648270-19648289 | None:intergenic | 40.0% | |
| ATACTTGTCTTGTCGATGTC+TGG | + | chr5_4:19648680-19648699 | Msa0842500:intron | 40.0% | |
| TACTTGTCTTGTCGATGTCT+GGG | + | chr5_4:19648681-19648700 | Msa0842500:intron | 40.0% | |
| TGGTTATCCTCAATATACCG+AGG | + | chr5_4:19648838-19648857 | Msa0842500:CDS | 40.0% | |
| ATCTTTGCCTCGGTATATTG+AGG | - | chr5_4:19648848-19648867 | None:intergenic | 40.0% | |
| AGTTACTCAAAGACCTCCTA+TGG | + | chr5_4:19648907-19648926 | Msa0842500:CDS | 40.0% | |
| ! | TTGGTGTTTCTACTCGTATG+TGG | + | chr5_4:19649542-19649561 | Msa0842500:intron | 40.0% |
| ! | GGAGGGTATATTGATATGTG+TGG | + | chr5_4:19649572-19649591 | Msa0842500:intron | 40.0% |
| ATATGTGTGGTTATTGGCGA+GGG | + | chr5_4:19649585-19649604 | Msa0842500:intron | 40.0% | |
| GATTCTCCATGCTTATGGAT+TGG | + | chr5_4:19649778-19649797 | Msa0842500:intron | 40.0% | |
| TAATCAGCTAGTACACTTGG+GGG | + | chr5_4:19649803-19649822 | Msa0842500:intron | 40.0% | |
| ! | ATTTCTGGGAATACATGGGT+AGG | + | chr5_4:19649853-19649872 | Msa0842500:intron | 40.0% |
| ! | TTTCTGGGAATACATGGGTA+GGG | + | chr5_4:19649854-19649873 | Msa0842500:intron | 40.0% |
| !! | ACCCATTTTCTGGGAATACA+TGG | + | chr5_4:19649889-19649908 | Msa0842500:intron | 40.0% |
| CCCATGTATTCCCAGAAAAT+GGG | - | chr5_4:19649893-19649912 | None:intergenic | 40.0% | |
| !! | CCCATTTTCTGGGAATACAT+GGG | + | chr5_4:19649890-19649909 | Msa0842500:intron | 40.0% |
| ACCCATGTATTCCCAGAAAA+TGG | - | chr5_4:19649894-19649913 | None:intergenic | 40.0% | |
| !! | TTTTCTGGGAATACATGGGT+AGG | + | chr5_4:19649894-19649913 | Msa0842500:intron | 40.0% |
| ! | TTTCTGGGAATACATGGGTA+GGG | + | chr5_4:19649854-19649873 | Msa0842500:intron | 40.0% |
| CACTTTCCCATCCTTTAACT+TGG | - | chr5_4:19650036-19650055 | None:intergenic | 40.0% | |
| CAAGTTAAAGGATGGGAAAG+TGG | + | chr5_4:19650034-19650053 | Msa0842500:intron | 40.0% | |
| GCACACTCTTGAATATTCCT+AGG | - | chr5_4:19650117-19650136 | None:intergenic | 40.0% | |
| !! | TCATGGGGGCATTTATTTCA+CGG | - | chr5_4:19650230-19650249 | None:intergenic | 40.0% |
| AGGTCGGTCATACTGAATAA+TGG | + | chr5_4:19650263-19650282 | Msa0842500:intron | 40.0% | |
| TCAGCTGTGAATGTATACAG+TGG | - | chr5_4:19650337-19650356 | None:intergenic | 40.0% | |
| ! | AGAGTGTTATTAGAGGCACA+AGG | + | chr5_4:19650482-19650501 | Msa0842500:CDS | 40.0% |
| !! | GCATTTTATGAAGGTGTGTC+CGG | + | chr5_4:19650670-19650689 | Msa0842500:intron | 40.0% |
| ! | CATTTTCAAATCGAGCCAAC+CGG | - | chr5_4:19650692-19650711 | None:intergenic | 40.0% |
| ATTTCTTTCATCCCTCCTGA+TGG | + | chr5_4:19650720-19650739 | Msa0842500:CDS | 40.0% | |
| ATCAAATCGAACGATCCATC+AGG | - | chr5_4:19650738-19650757 | None:intergenic | 40.0% | |
| ! | CGTTCGATTTGATGACATAC+AGG | + | chr5_4:19650745-19650764 | Msa0842500:CDS | 40.0% |
| !! | GGTTAAGCCTTTAATTTGGG+TGG | + | chr5_4:19650898-19650917 | Msa0842500:intron | 40.0% |
| ! | TTTTCTTGGCAGAAGATTGG+GGG | + | chr5_4:19651041-19651060 | Msa0842500:intron | 40.0% |
| !! | TCCTTTTAATTCACGCAGTG+AGG | + | chr5_4:19651070-19651089 | Msa0842500:intron | 40.0% |
| ACCTCACTGCGTGAATTAAA+AGG | - | chr5_4:19651074-19651093 | None:intergenic | 40.0% | |
| CAACTCAATCTCGACATTTG+TGG | - | chr5_4:19651169-19651188 | None:intergenic | 40.0% | |
| !! | TTAGGATTGGTTGCATCAAC+AGG | - | chr5_4:19651198-19651217 | None:intergenic | 40.0% |
| TGACGTTCGAACATTAGGAT+TGG | - | chr5_4:19651211-19651230 | None:intergenic | 40.0% | |
| TCCTAATGTTCGAACGTCAA+TGG | + | chr5_4:19651212-19651231 | Msa0842500:CDS | 40.0% | |
| CCTAATGTTCGAACGTCAAT+GGG | + | chr5_4:19651213-19651232 | Msa0842500:CDS | 40.0% | |
| TGGAAAATTCGATCCTTCTC+TGG | + | chr5_4:19651273-19651292 | Msa0842500:CDS | 40.0% | |
| AAAATTCGATCCTTCTCTGG+AGG | + | chr5_4:19651276-19651295 | Msa0842500:CDS | 40.0% | |
| GCTTCCTCATCTGTTATACT+GGG | - | chr5_4:19651437-19651456 | None:intergenic | 40.0% | |
| TGCTTCCTCATCTGTTATAC+TGG | - | chr5_4:19651438-19651457 | None:intergenic | 40.0% | |
| ! | CGTATAGGAGCTTTTCTTTC+AGG | - | chr5_4:19651464-19651483 | None:intergenic | 40.0% |
| GAGAACTGGACATCAGAAAA+AGG | + | chr5_4:19651894-19651913 | Msa0842500:intron | 40.0% | |
| TGGACATCAGAAAAAGGATC+TGG | + | chr5_4:19651900-19651919 | Msa0842500:intron | 40.0% | |
| TGGAGAGAAAGTGATAGTTC+AGG | - | chr5_4:19651955-19651974 | None:intergenic | 40.0% | |
| AAAGGACTAAAGGGATAGAC+GGG | - | chr5_4:19652051-19652070 | None:intergenic | 40.0% | |
| CAAAGGACTAAAGGGATAGA+CGG | - | chr5_4:19652052-19652071 | None:intergenic | 40.0% | |
| TTTCCGATTAGCAGATTCAC+TGG | + | chr5_4:19652234-19652253 | Msa0842500:intron | 40.0% | |
| AATAGGTCGAGTTTCAGTCA+TGG | - | chr5_4:19652297-19652316 | None:intergenic | 40.0% | |
| ATTGAAGAAGTTACTAGGGG+TGG | + | chr5_4:19652329-19652348 | Msa0842500:intron | 40.0% | |
| TGCAAAAAATGACATTCGGG+TGG | + | chr5_4:19652391-19652410 | Msa0842500:intron | 40.0% | |
| GCAAAAAATGACATTCGGGT+GGG | + | chr5_4:19652392-19652411 | Msa0842500:intron | 40.0% | |
| !!! | GGTTACCGGGTTAGTATTTT+CGG | + | chr5_4:19652431-19652450 | Msa0842500:intron | 40.0% |
| GGAAACCGAAAATACTAACC+CGG | - | chr5_4:19652439-19652458 | None:intergenic | 40.0% | |
| AGAGAATACAAGAGTTCGGT+CGG | - | chr5_4:19652519-19652538 | None:intergenic | 40.0% | |
| ! | TTATCAGTGATGGGACTACA+CGG | + | chr5_4:19652582-19652601 | Msa0842500:intron | 40.0% |
| ATAAAGGGAACAGAACAGCA+TGG | + | chr5_4:19652949-19652968 | Msa0842500:intron | 40.0% | |
| ATCAAACCCAGTAAGAAGTG+TGG | - | chr5_4:19653024-19653043 | None:intergenic | 40.0% | |
| GATTGTTCGGATTCACAGAA+AGG | - | chr5_4:19653073-19653092 | None:intergenic | 40.0% | |
| ! | TTGAGCGGTTTACGGTTTTT+CGG | - | chr5_4:19653118-19653137 | None:intergenic | 40.0% |
| AAAACGGTTTGAGCGGTTTA+CGG | - | chr5_4:19653126-19653145 | None:intergenic | 40.0% | |
| TCGATACTGGACCCTTATAT+TGG | + | chr5_4:19653155-19653174 | Msa0842500:intron | 40.0% | |
| AAACCGCGGTTCCAATATAA+GGG | - | chr5_4:19653169-19653188 | None:intergenic | 40.0% | |
| TAAACCGCGGTTCCAATATA+AGG | - | chr5_4:19653170-19653189 | None:intergenic | 40.0% | |
| TTATATTGGAACCGCGGTTT+AGG | + | chr5_4:19653169-19653188 | Msa0842500:intron | 40.0% | |
| ! | TCATATGTAACTTCTAGGGG+TGG | - | chr5_4:19653242-19653261 | None:intergenic | 40.0% |
| AGTTTGACATAGGAGACAGT+TGG | + | chr5_4:19653397-19653416 | Msa0842500:intron | 40.0% | |
| GTTTGACATAGGAGACAGTT+GGG | + | chr5_4:19653398-19653417 | Msa0842500:intron | 40.0% | |
| !! | ATGGATTGGGGAATGGTTTA+AGG | + | chr5_4:19653479-19653498 | Msa0842500:intron | 40.0% |
| ! | TGGATTGGGGAATGGTTTAA+GGG | + | chr5_4:19653480-19653499 | Msa0842500:intron | 40.0% |
| GGTAATCACCATGTTTGTCT+TGG | + | chr5_4:19653695-19653714 | Msa0842500:intron | 40.0% | |
| TATTGAGAAGAGTGGGTATC+AGG | + | chr5_4:19653743-19653762 | Msa0842500:CDS | 40.0% | |
| GGTGAGATACATAACAATGG+CGG | + | chr5_4:19653776-19653795 | Msa0842500:CDS | 40.0% | |
| GTGAGATACATAACAATGGC+GGG | + | chr5_4:19653777-19653796 | Msa0842500:CDS | 40.0% | |
| CAACTACAGCGAATTCAAAC+AGG | + | chr5_4:19653860-19653879 | Msa0842500:three_prime_UTR | 40.0% | |
| ! | TTGGGACTCTTTAGAGAAGT+TGG | + | chr5_4:19653893-19653912 | Msa0842500:three_prime_UTR | 40.0% |
| TTGGAGAAAAGGACTACACA+AGG | - | chr5_4:19654035-19654054 | None:intergenic | 40.0% | |
| !! | AATAACTTGTTTCCTCGCGG+TGG | + | chr5_4:19647889-19647908 | Msa0842500:five_prime_UTR | 45.0% |
| AAGAAGACGACGGAGAATTG+GGG | - | chr5_4:19647932-19647951 | None:intergenic | 45.0% | |
| GAAGAAGACGACGGAGAATT+GGG | - | chr5_4:19647933-19647952 | None:intergenic | 45.0% | |
| TGAAGAAGACGACGGAGAAT+TGG | - | chr5_4:19647934-19647953 | None:intergenic | 45.0% | |
| GTGGTGAATGAAGAAGACGA+CGG | - | chr5_4:19647942-19647961 | None:intergenic | 45.0% | |
| ! | TCGGATTTGGAGCAGTGTTA+CGG | - | chr5_4:19647967-19647986 | None:intergenic | 45.0% |
| !! | TTGATGATGCGGTGGTTGAT+CGG | - | chr5_4:19647999-19648018 | None:intergenic | 45.0% |
| TGTTCGCATCAGTGCTTCAT+AGG | - | chr5_4:19648602-19648621 | None:intergenic | 45.0% | |
| ACTTGTCTTGTCGATGTCTG+GGG | + | chr5_4:19648682-19648701 | Msa0842500:intron | 45.0% | |
| ! | AAGCTTTCGGTTGGAAGTGT+TGG | + | chr5_4:19648713-19648732 | Msa0842500:intron | 45.0% |
| ! | TCAGGTTTTCTTGGATGTGG+TGG | + | chr5_4:19649077-19649096 | Msa0842500:intron | 45.0% |
| CTACTCGTATGTGGATACTC+TGG | + | chr5_4:19649551-19649570 | Msa0842500:intron | 45.0% | |
| TCGTATGTGGATACTCTGGA+GGG | + | chr5_4:19649555-19649574 | Msa0842500:intron | 45.0% | |
| GATATGTGTGGTTATTGGCG+AGG | + | chr5_4:19649584-19649603 | Msa0842500:intron | 45.0% | |
| !! | GTACCGATTCTCCATGCTTA+TGG | + | chr5_4:19649773-19649792 | Msa0842500:intron | 45.0% |
| AATCAGCTAGTACACTTGGG+GGG | + | chr5_4:19649804-19649823 | Msa0842500:intron | 45.0% | |
| TTCCTGGGTATGTTGTTCCT+AGG | + | chr5_4:19650187-19650206 | Msa0842500:intron | 45.0% | |
| TTCCTAGGAACAACATACCC+AGG | - | chr5_4:19650192-19650211 | None:intergenic | 45.0% | |
| !! | CATGGGGGCATTTATTTCAC+GGG | - | chr5_4:19650229-19650248 | None:intergenic | 45.0% |
| GTGAAATAAATGCCCCCATG+AGG | + | chr5_4:19650229-19650248 | Msa0842500:intron | 45.0% | |
| TCCTAAAGAACACCTCATGG+GGG | - | chr5_4:19650244-19650263 | None:intergenic | 45.0% | |
| CTCCTAAAGAACACCTCATG+GGG | - | chr5_4:19650245-19650264 | None:intergenic | 45.0% | |
| CCTCCTAAAGAACACCTCAT+GGG | - | chr5_4:19650246-19650265 | None:intergenic | 45.0% | |
| ACCTCCTAAAGAACACCTCA+TGG | - | chr5_4:19650247-19650266 | None:intergenic | 45.0% | |
| ! | TGAGGTGTTCTTTAGGAGGT+CGG | + | chr5_4:19650247-19650266 | Msa0842500:intron | 45.0% |
| !! | CAAGTCTATCGCTTTTCCCT+TGG | - | chr5_4:19650516-19650535 | None:intergenic | 45.0% |
| CAAGGGAAAAGCGATAGACT+TGG | + | chr5_4:19650514-19650533 | Msa0842500:CDS | 45.0% | |
| ! | TTTATGAAGGTGTGTCCGGT+TGG | + | chr5_4:19650674-19650693 | Msa0842500:intron | 45.0% |
| AATCGAACGATCCATCAGGA+GGG | - | chr5_4:19650734-19650753 | None:intergenic | 45.0% | |
| AAATCGAACGATCCATCAGG+AGG | - | chr5_4:19650735-19650754 | None:intergenic | 45.0% | |
| GGAGTCAGTTTAAGGAACGT+AGG | + | chr5_4:19650975-19650994 | Msa0842500:CDS | 45.0% | |
| TTGGTTGCATCAACAGGAAC+AGG | - | chr5_4:19651192-19651211 | None:intergenic | 45.0% | |
| CCCATTGACGTTCGAACATT+AGG | - | chr5_4:19651216-19651235 | None:intergenic | 45.0% | |
| CCTCATCTGTTATACTGGGA+AGG | - | chr5_4:19651433-19651452 | None:intergenic | 45.0% | |
| CCTTCCCAGTATAACAGATG+AGG | + | chr5_4:19651430-19651449 | Msa0842500:CDS | 45.0% | |
| !! | CAGACAGAGGCATTGAATGA+AGG | - | chr5_4:19651605-19651624 | None:intergenic | 45.0% |
| AAGGACTAAAGGGATAGACG+GGG | - | chr5_4:19652050-19652069 | None:intergenic | 45.0% | |
| CGTCTATCCCTTTAGTCCTT+TGG | + | chr5_4:19652050-19652069 | Msa0842500:intron | 45.0% | |
| CCAGGAGAAAGAGAAAGTGA+GGG | - | chr5_4:19652122-19652141 | None:intergenic | 45.0% | |
| ACCAGGAGAAAGAGAAAGTG+AGG | - | chr5_4:19652123-19652142 | None:intergenic | 45.0% | |
| TCGAGTTTCAGTCATGGTTG+GGG | - | chr5_4:19652291-19652310 | None:intergenic | 45.0% | |
| GTCGAGTTTCAGTCATGGTT+GGG | - | chr5_4:19652292-19652311 | None:intergenic | 45.0% | |
| TTCCTGTGAGTAGCAATGGT+CGG | + | chr5_4:19652455-19652474 | Msa0842500:intron | 45.0% | |
| ! | GGTCGGTTTACGGTTTCTAT+CGG | - | chr5_4:19652502-19652521 | None:intergenic | 45.0% |
| ! | ACAAGAGTTCGGTCGGTTTA+CGG | - | chr5_4:19652512-19652531 | None:intergenic | 45.0% |
| CCGGATCTGAACAAACAAGA+GGG | - | chr5_4:19652999-19653018 | None:intergenic | 45.0% | |
| ! | CCCTCTTGTTTGTTCAGATC+CGG | + | chr5_4:19652996-19653015 | Msa0842500:intron | 45.0% |
| TCCGGATCTGAACAAACAAG+AGG | - | chr5_4:19653000-19653019 | None:intergenic | 45.0% | |
| TTTAAACGGGTCGTTCGGTT+CGG | - | chr5_4:19653095-19653114 | None:intergenic | 45.0% | |
| TTCGGTTTAAACGGGTCGTT+CGG | - | chr5_4:19653100-19653119 | None:intergenic | 45.0% | |
| CTACAGCGAATTCAAACAGG+TGG | + | chr5_4:19653863-19653882 | Msa0842500:three_prime_UTR | 45.0% | |
| AGCGAATTCAAACAGGTGGA+TGG | + | chr5_4:19653867-19653886 | Msa0842500:three_prime_UTR | 45.0% | |
| GCGAATTCAAACAGGTGGAT+GGG | + | chr5_4:19653868-19653887 | Msa0842500:three_prime_UTR | 45.0% | |
| CGAATTCAAACAGGTGGATG+GGG | + | chr5_4:19653869-19653888 | Msa0842500:three_prime_UTR | 45.0% | |
| GCTTGCGAATTCCTGATTCT+TGG | - | chr5_4:19654003-19654022 | None:intergenic | 45.0% | |
| !!! | TATACTTTTAAAAAAAAAAA+AGG | + | chr5_4:19650074-19650093 | Msa0842500:intron | 5.0% |
| !!! | TATTTTTTTAATAATTTATG+AGG | - | chr5_4:19652653-19652672 | None:intergenic | 5.0% |
| ! | GATTTGGAGCAGTGTTACGG+TGG | - | chr5_4:19647964-19647983 | None:intergenic | 50.0% |
| ACCACCGCATCATCAATGTC+AGG | + | chr5_4:19648003-19648022 | Msa0842500:exon | 50.0% | |
| CCACCGCATCATCAATGTCA+GGG | + | chr5_4:19648004-19648023 | Msa0842500:exon | 50.0% | |
| CACCGCATCATCAATGTCAG+GGG | + | chr5_4:19648005-19648024 | Msa0842500:exon | 50.0% | |
| !! | TGCCCCTGACATTGATGATG+CGG | - | chr5_4:19648010-19648029 | None:intergenic | 50.0% |
| CTGTTCCTCCTCGACATCAA+AGG | + | chr5_4:19648039-19648058 | Msa0842500:CDS | 50.0% | |
| GAAGAAACGTTCGGCTTCGA+TGG | - | chr5_4:19648106-19648125 | None:intergenic | 50.0% | |
| TGGGGCAATGGACAAGCTTT+CGG | + | chr5_4:19648700-19648719 | Msa0842500:intron | 50.0% | |
| GCAATGGACAAGCTTTCGGT+TGG | + | chr5_4:19648704-19648723 | Msa0842500:intron | 50.0% | |
| GCATTAGTCACTGCCATAGG+AGG | - | chr5_4:19648923-19648942 | None:intergenic | 50.0% | |
| ACGGCATTAGTCACTGCCAT+AGG | - | chr5_4:19648926-19648945 | None:intergenic | 50.0% | |
| CAGTGACTAATGCCGTGTCT+TGG | + | chr5_4:19648930-19648949 | Msa0842500:CDS | 50.0% | |
| CTCGTATGTGGATACTCTGG+AGG | + | chr5_4:19649554-19649573 | Msa0842500:intron | 50.0% | |
| ATCAGCTAGTACACTTGGGG+GGG | + | chr5_4:19649805-19649824 | Msa0842500:intron | 50.0% | |
| ! | CCCATGAGGTGTTCTTTAGG+AGG | + | chr5_4:19650243-19650262 | Msa0842500:intron | 50.0% |
| GGTATGCCCGAGTGTAAACT+TGG | + | chr5_4:19650449-19650468 | Msa0842500:CDS | 50.0% | |
| GCACAAGGCAGAACAACCAA+GGG | + | chr5_4:19650497-19650516 | Msa0842500:CDS | 50.0% | |
| GACATACAGGCTCAGTACAC+AGG | + | chr5_4:19650758-19650777 | Msa0842500:CDS | 50.0% | |
| AGATACCTTGCCTCCAGAGA+AGG | - | chr5_4:19651289-19651308 | None:intergenic | 50.0% | |
| ! | GAGGCAAGGTATCTTCGAAG+TGG | + | chr5_4:19651295-19651314 | Msa0842500:intron | 50.0% |
| GGATAGACGGGGAATAGCTT+AGG | - | chr5_4:19652039-19652058 | None:intergenic | 50.0% | |
| CCCTCACTTTCTCTTTCTCC+TGG | + | chr5_4:19652119-19652138 | Msa0842500:intron | 50.0% | |
| CGAGTTTCAGTCATGGTTGG+GGG | - | chr5_4:19652290-19652309 | None:intergenic | 50.0% | |
| GGTCGAGTTTCAGTCATGGT+TGG | - | chr5_4:19652293-19652312 | None:intergenic | 50.0% | |
| CACTCGGTTTCTTCGGTTTC+GGG | - | chr5_4:19652373-19652392 | None:intergenic | 50.0% | |
| GCACTCGGTTTCTTCGGTTT+CGG | - | chr5_4:19652374-19652393 | None:intergenic | 50.0% | |
| CGGTTTCCTGTGAGTAGCAA+TGG | + | chr5_4:19652451-19652470 | Msa0842500:intron | 50.0% | |
| TGAGTAGCAATGGTCGGACT+CGG | + | chr5_4:19652461-19652480 | Msa0842500:intron | 50.0% | |
| TCCGGAACCACACTTCTTAC+TGG | + | chr5_4:19653014-19653033 | Msa0842500:intron | 50.0% | |
| ! | CCCAGTAAGAAGTGTGGTTC+CGG | - | chr5_4:19653018-19653037 | None:intergenic | 50.0% |
| CCGGAACCACACTTCTTACT+GGG | + | chr5_4:19653015-19653034 | Msa0842500:intron | 50.0% | |
| !! | GTCGTTCGGTTCGGATTGTT+CGG | - | chr5_4:19653086-19653105 | None:intergenic | 50.0% |
| GTGTGGGAAAACGGTTTGAG+CGG | - | chr5_4:19653133-19653152 | None:intergenic | 50.0% | |
| ! | GCTCAAACCGTTTTCCCACA+CGG | + | chr5_4:19653132-19653151 | Msa0842500:intron | 50.0% |
| ! | GTATCGACCGTGTGGGAAAA+CGG | - | chr5_4:19653142-19653161 | None:intergenic | 50.0% |
| ! | TTTTCCCACACGGTCGATAC+TGG | + | chr5_4:19653142-19653161 | Msa0842500:intron | 50.0% |
| GGACCCTTATATTGGAACCG+CGG | + | chr5_4:19653163-19653182 | Msa0842500:intron | 50.0% | |
| ! | AACTTCTAGGGGTGGACAAC+CGG | - | chr5_4:19653234-19653253 | None:intergenic | 50.0% |
| GGCAGTTAACGCCATCCAAA+TGG | + | chr5_4:19653431-19653450 | Msa0842500:intron | 50.0% | |
| TGGGTATCAGGCTCTTCCAT+GGG | + | chr5_4:19653755-19653774 | Msa0842500:CDS | 50.0% | |
| TCAAACAGGTGGATGGGGTT+TGG | + | chr5_4:19653874-19653893 | Msa0842500:three_prime_UTR | 50.0% | |
| CAAACAGGTGGATGGGGTTT+GGG | + | chr5_4:19653875-19653894 | Msa0842500:three_prime_UTR | 50.0% | |
| TTGGAGCAGTGTTACGGTGG+TGG | - | chr5_4:19647961-19647980 | None:intergenic | 55.0% | |
| TCGGTGGATCGGATCGGATT+TGG | - | chr5_4:19647980-19647999 | None:intergenic | 55.0% | |
| GGTTGATCGGTGGATCGGAT+CGG | - | chr5_4:19647986-19648005 | None:intergenic | 55.0% | |
| ATGATGCGGTGGTTGATCGG+TGG | - | chr5_4:19647996-19648015 | None:intergenic | 55.0% | |
| !! | CCCTGACATTGATGATGCGG+TGG | - | chr5_4:19648007-19648026 | None:intergenic | 55.0% |
| GAAACGTTCGGCTTCGATGG+CGG | - | chr5_4:19648103-19648122 | None:intergenic | 55.0% | |
| ! | CTTGTCGATGTCTGGGGCAA+TGG | + | chr5_4:19648688-19648707 | Msa0842500:intron | 55.0% |
| CCCTTCACTTCGCCAAGACA+CGG | - | chr5_4:19648945-19648964 | None:intergenic | 55.0% | |
| CCGTGTCTTGGCGAAGTGAA+GGG | + | chr5_4:19648942-19648961 | Msa0842500:CDS | 55.0% | |
| TCCTGGGTATCAAGGTTCCC+AGG | + | chr5_4:19649964-19649983 | Msa0842500:intron | 55.0% | |
| TCCTGGGAACCTTGATACCC+AGG | - | chr5_4:19649968-19649987 | None:intergenic | 55.0% | |
| ! | GCCCCCATGAGGTGTTCTTT+AGG | + | chr5_4:19650240-19650259 | Msa0842500:intron | 55.0% |
| GGCACAAGGCAGAACAACCA+AGG | + | chr5_4:19650496-19650515 | Msa0842500:CDS | 55.0% | |
| ! | TCGATCCTTCTCTGGAGGCA+AGG | + | chr5_4:19651281-19651300 | Msa0842500:CDS | 55.0% |
| TGGTGAGAGAGACAGCAGGA+AGG | - | chr5_4:19651670-19651689 | None:intergenic | 55.0% | |
| GCAATGGTGAGAGAGACAGC+AGG | - | chr5_4:19651674-19651693 | None:intergenic | 55.0% | |
| TCGGTTTCTTCGGTTTCGGG+CGG | - | chr5_4:19652370-19652389 | None:intergenic | 55.0% | |
| GACATTCGGGTGGGTCTGTA+CGG | + | chr5_4:19652401-19652420 | Msa0842500:intron | 55.0% | |
| ACATTCGGGTGGGTCTGTAC+GGG | + | chr5_4:19652402-19652421 | Msa0842500:intron | 55.0% | |
| ! | TGTACGGGTTGTCGGGTTAC+CGG | + | chr5_4:19652417-19652436 | Msa0842500:intron | 55.0% |
| GTCCGACCATTGCTACTCAC+AGG | - | chr5_4:19652460-19652479 | None:intergenic | 55.0% | |
| TAGCAATGGTCGGACTCGGA+TGG | + | chr5_4:19652465-19652484 | Msa0842500:intron | 55.0% | |
| GAACGAAGAGGAACACGCAG+AGG | - | chr5_4:19652917-19652936 | None:intergenic | 55.0% | |
| ATTGGAACCGCGGTTTAGGC+TGG | + | chr5_4:19653173-19653192 | Msa0842500:intron | 55.0% | |
| ! | AACCGCGGTTTAGGCTGGTT+TGG | + | chr5_4:19653178-19653197 | Msa0842500:intron | 55.0% |
| !! | ACCGCGGTTTAGGCTGGTTT+GGG | + | chr5_4:19653179-19653198 | Msa0842500:intron | 55.0% |
| TCCCAAACCAGCCTAAACCG+CGG | - | chr5_4:19653183-19653202 | None:intergenic | 55.0% | |
| ! | ACTTCTAGGGGTGGACAACC+GGG | - | chr5_4:19653233-19653252 | None:intergenic | 55.0% |
| ! | AGACAGTTGGGTTGCCAACG+TGG | + | chr5_4:19653410-19653429 | Msa0842500:intron | 55.0% |
| GATGGCGTTAACTGCCACGT+TGG | - | chr5_4:19653427-19653446 | None:intergenic | 55.0% | |
| GTGGGTATCAGGCTCTTCCA+TGG | + | chr5_4:19653754-19653773 | Msa0842500:CDS | 55.0% | |
| ! | TGGCGGGAGAGTATGAGCTA+AGG | + | chr5_4:19653793-19653812 | Msa0842500:CDS | 55.0% |
| GCGGTGGTTGATCGGTGGAT+CGG | - | chr5_4:19647991-19648010 | None:intergenic | 60.0% | |
| TGCGGCCTTTGATGTCGAGG+AGG | - | chr5_4:19648047-19648066 | None:intergenic | 60.0% | |
| GGATGCGGCCTTTGATGTCG+AGG | - | chr5_4:19648050-19648069 | None:intergenic | 60.0% | |
| TCAAAGGCCGCATCCTCGTC+TGG | + | chr5_4:19648055-19648074 | Msa0842500:CDS | 60.0% | |
| AGTCACGCCAGACGAGGATG+CGG | - | chr5_4:19648065-19648084 | None:intergenic | 60.0% | |
| GCCGTGTCTTGGCGAAGTGA+AGG | + | chr5_4:19648941-19648960 | Msa0842500:CDS | 60.0% | |
| GTGTGGTTATTGGCGAGGGC+TGG | + | chr5_4:19649589-19649608 | Msa0842500:intron | 60.0% | |
| CGGTTTCTTCGGTTTCGGGC+GGG | - | chr5_4:19652369-19652388 | None:intergenic | 60.0% | |
| ! | GGTGGGTCTGTACGGGTTGT+CGG | + | chr5_4:19652409-19652428 | Msa0842500:intron | 60.0% |
| ! | GTGGGTCTGTACGGGTTGTC+GGG | + | chr5_4:19652410-19652429 | Msa0842500:intron | 60.0% |
| ! | GTACGGGTTGTCGGGTTACC+GGG | + | chr5_4:19652418-19652437 | Msa0842500:intron | 60.0% |
| !! | GGGTCCAGTATCGACCGTGT+GGG | - | chr5_4:19653149-19653168 | None:intergenic | 60.0% |
| !! | AGGGTCCAGTATCGACCGTG+TGG | - | chr5_4:19653150-19653169 | None:intergenic | 60.0% |
| AGTTTGAACCCGAACCCGCC+CGG | + | chr5_4:19653202-19653221 | Msa0842500:intron | 60.0% | |
| CTCGTCTGGCGTGACTACCG+CGG | + | chr5_4:19648069-19648088 | Msa0842500:CDS | 65.0% | |
| !! | TTCGGTTTCGGGCGGGCTAC+GGG | - | chr5_4:19652362-19652381 | None:intergenic | 65.0% |
| !! | CTTCGGTTTCGGGCGGGCTA+CGG | - | chr5_4:19652363-19652382 | None:intergenic | 65.0% |
| TCTAGGGGTGGACAACCGGG+CGG | - | chr5_4:19653230-19653249 | None:intergenic | 65.0% | |
| ACGACGTCGTTGCCACCGCG+AGG | - | chr5_4:19647904-19647923 | None:intergenic | 70.0% | |
| CGCGGTAGTCACGCCAGACG+AGG | - | chr5_4:19648071-19648090 | None:intergenic | 70.0% | |
| CTAGGGGTGGACAACCGGGC+GGG | - | chr5_4:19653229-19653248 | None:intergenic | 70.0% | |
| !! | CGATGGCGGAGACGTCGCCG+CGG | - | chr5_4:19648089-19648108 | None:intergenic | 75.0% |
| GTGGACAACCGGGCGGGTCC+GGG | - | chr5_4:19653223-19653242 | None:intergenic | 75.0% | |
| GGTGGACAACCGGGCGGGTC+CGG | - | chr5_4:19653224-19653243 | None:intergenic | 75.0% | |
| ! | ACAACCGGGCGGGTCCGGGC+GGG | - | chr5_4:19653219-19653238 | None:intergenic | 80.0% |
| ! | GACAACCGGGCGGGTCCGGG+CGG | - | chr5_4:19653220-19653239 | None:intergenic | 80.0% |
| !! | GGGCGGGTCCGGGCGGGTTC+GGG | - | chr5_4:19653213-19653232 | None:intergenic | 85.0% |
| !! | CGGGCGGGTCCGGGCGGGTT+CGG | - | chr5_4:19653214-19653233 | None:intergenic | 85.0% |
| ! | CGAACCCGCCCGGACCCGCC+CGG | + | chr5_4:19653212-19653231 | Msa0842500:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 19647861 | 19654289 | 19647861 | ID=Msa0842500;Name=Msa0842500 |
| chr5_4 | mRNA | 19647861 | 19654289 | 19647861 | ID=Msa0842500-mRNA-1;Parent=Msa0842500;Name=Msa0842500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=157|0.88|1|1|0.88|1|10|465|407 |
| chr5_4 | exon | 19647861 | 19648146 | 19647861 | ID=Msa0842500-mRNA-1:exon:8143;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19648246 | 19648392 | 19648246 | ID=Msa0842500-mRNA-1:exon:8144;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19648809 | 19648985 | 19648809 | ID=Msa0842500-mRNA-1:exon:8145;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19649081 | 19649184 | 19649081 | ID=Msa0842500-mRNA-1:exon:8146;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19650448 | 19650555 | 19650448 | ID=Msa0842500-mRNA-1:exon:8147;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19650683 | 19650779 | 19650683 | ID=Msa0842500-mRNA-1:exon:8148;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19650899 | 19650996 | 19650899 | ID=Msa0842500-mRNA-1:exon:8149;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19651161 | 19651302 | 19651161 | ID=Msa0842500-mRNA-1:exon:8150;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19651404 | 19651526 | 19651404 | ID=Msa0842500-mRNA-1:exon:8151;Parent=Msa0842500-mRNA-1 |
| chr5_4 | exon | 19653726 | 19654289 | 19653726 | ID=Msa0842500-mRNA-1:exon:8152;Parent=Msa0842500-mRNA-1 |
| chr5_4 | five_prime_UTR | 19647861 | 19648017 | 19647861 | ID=Msa0842500-mRNA-1:five_prime_utr;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19648018 | 19648146 | 19648018 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19648246 | 19648392 | 19648246 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19648809 | 19648985 | 19648809 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19649081 | 19649184 | 19649081 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19650448 | 19650555 | 19650448 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19650683 | 19650779 | 19650683 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19650899 | 19650996 | 19650899 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19651161 | 19651302 | 19651161 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19651404 | 19651526 | 19651404 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | CDS | 19653726 | 19653824 | 19653726 | ID=Msa0842500-mRNA-1:cds;Parent=Msa0842500-mRNA-1 |
| chr5_4 | three_prime_UTR | 19653825 | 19654289 | 19653825 | ID=Msa0842500-mRNA-1:three_prime_utr;Parent=Msa0842500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
