Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843170 | KEH28584.1 | 67.424 | 396 | 45 | 4 | 17 | 364 | 1 | 360 | 5.03e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843170 | A0A072UFQ5 | 67.424 | 396 | 45 | 4 | 17 | 364 | 1 | 360 | 2.40e-176 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188460 | Msa0843170 | 0.801681 | 8.029503e-49 | -8.615850e-47 |
| Msa0843170 | Msa0954910 | 0.810223 | 1.282590e-50 | -8.615850e-47 |
| Msa0843170 | Msa1014540 | 0.804637 | 1.963680e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843170 | MtrunA17_Chr4g0002051 | 62.170 | 341 | 21 | 3 | 104 | 364 | 9 | 321 | 2.57e-137 | 393 |
| Msa0843170 | MtrunA17_Chr8g0381471 | 70.621 | 177 | 5 | 1 | 235 | 364 | 1 | 177 | 6.22e-81 | 244 |
| Msa0843170 | MtrunA17_Chr4g0002061 | 65.741 | 108 | 28 | 2 | 1 | 107 | 14 | 113 | 2.38e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATACCATAACAAGTTTA+TGG | 0.178722 | 5_4:-20706135 | Msa0843170:CDS |
| CCTAGTCACTCCGAATGATT+TGG | 0.276768 | 5_4:-20705689 | Msa0843170:CDS |
| GTCGTAGCCTGCACTCCAAC+TGG | 0.283193 | 5_4:-20707737 | Msa0843170:CDS |
| GCGAGTTTGTACCGAGAAAA+TGG | 0.294933 | 5_4:+20706295 | None:intergenic |
| GATAGCATTGGATTTGATAT+TGG | 0.305750 | 5_4:-20705403 | Msa0843170:CDS |
| TTAGGAATGATTGTGGAATA+TGG | 0.306351 | 5_4:-20705580 | Msa0843170:intron |
| TTTCTTGTTCCTTCACAGTA+TGG | 0.310559 | 5_4:+20707337 | None:intergenic |
| GAAAATAAATATTTGAAGAT+TGG | 0.312527 | 5_4:-20708077 | Msa0843170:CDS |
| TTACTTACACTAGGAATAAA+AGG | 0.320416 | 5_4:+20707662 | None:intergenic |
| CAGTGAAGAAGACACAAATA+TGG | 0.349269 | 5_4:-20708112 | Msa0843170:CDS |
| TTGGCTTTAGGCTTTGTATA+TGG | 0.351595 | 5_4:-20705782 | Msa0843170:intron |
| AAATACCATAACAAGTTTAT+GGG | 0.365331 | 5_4:-20706134 | Msa0843170:CDS |
| AGGTCCCCATAAACTTGTTA+TGG | 0.415010 | 5_4:+20706129 | None:intergenic |
| GGCTAAGATGGAGCTTTCCT+TGG | 0.415969 | 5_4:-20707927 | Msa0843170:CDS |
| CGGAGTGACTAGGCTAAATT+CGG | 0.418219 | 5_4:+20705699 | None:intergenic |
| GTCTCATTCAATAAGTTTGA+AGG | 0.422134 | 5_4:+20705378 | None:intergenic |
| CTAGTCACTCCGAATGATTT+GGG | 0.432092 | 5_4:-20705688 | Msa0843170:CDS |
| TTGTGGATTTGGTACCAGAT+AGG | 0.443107 | 5_4:-20709521 | Msa0843170:intron |
| AGGCTAAATTCGGATATGTT+CGG | 0.457136 | 5_4:+20705709 | None:intergenic |
| AAAACAAAGGATGGCTAAGA+TGG | 0.462193 | 5_4:-20707939 | Msa0843170:CDS |
| GCCTGCATTCCCAAATCATT+CGG | 0.464260 | 5_4:+20705679 | None:intergenic |
| CTTATTGAATGAGACAACTT+TGG | 0.469819 | 5_4:-20705370 | Msa0843170:CDS |
| TCCGAATGATTTGGGAATGC+AGG | 0.472595 | 5_4:-20705680 | Msa0843170:CDS |
| TACCTTTGAAATCTTATCAA+AGG | 0.474112 | 5_4:+20706109 | None:intergenic |
| ATAATTTACTGTGAGTGTCT+TGG | 0.481255 | 5_4:+20707690 | None:intergenic |
| TTCAATGTTAGGAATGATTG+TGG | 0.482902 | 5_4:-20705587 | Msa0843170:intron |
| GTAGAACCCAGTTGGAGTGC+AGG | 0.497938 | 5_4:+20707730 | None:intergenic |
| TCTGGTACCAAATCCACAAA+AGG | 0.506332 | 5_4:+20709525 | None:intergenic |
| TGAAATAAAACGCCGACGAA+CGG | 0.507912 | 5_4:-20709616 | Msa0843170:CDS |
| ATGGGTCATAAAGTGGATGA+TGG | 0.508546 | 5_4:-20705561 | Msa0843170:CDS |
| CATAGCAATATGTGCTGGCA+TGG | 0.510558 | 5_4:-20706184 | Msa0843170:intron |
| TATCCCTTTGATCTCTTCCA+AGG | 0.516053 | 5_4:+20707910 | None:intergenic |
| TCTTGGTCAAGCATTTCTCT+AGG | 0.517758 | 5_4:+20707295 | None:intergenic |
| TTTCCTTGGAAGAGATCAAA+GGG | 0.519832 | 5_4:-20707913 | Msa0843170:CDS |
| AAAATAAGATTACTACGTCT+TGG | 0.519892 | 5_4:+20707278 | None:intergenic |
| TTGACACTAGACATCGGAAC+TGG | 0.520973 | 5_4:+20707866 | None:intergenic |
| GCAATATGTGCTGGCATGGA+AGG | 0.521424 | 5_4:-20706180 | Msa0843170:CDS |
| CACAAATATGGATTCCAACA+AGG | 0.532460 | 5_4:-20708100 | Msa0843170:CDS |
| GACACTCACAGTAAATTATG+TGG | 0.534907 | 5_4:-20707686 | Msa0843170:CDS |
| GACCTTTGATAAGATTTCAA+AGG | 0.535769 | 5_4:-20706111 | Msa0843170:intron |
| CCAAATCATTCGGAGTGACT+AGG | 0.536951 | 5_4:+20705689 | None:intergenic |
| TACAAGACTCAGGATAGCAT+TGG | 0.545324 | 5_4:-20705415 | Msa0843170:CDS |
| TAGGAATGATTGTGGAATAT+GGG | 0.546242 | 5_4:-20705579 | Msa0843170:CDS |
| GTGGAATATGGGTCATAAAG+TGG | 0.551770 | 5_4:-20705568 | Msa0843170:CDS |
| CTTTCCTTGGAAGAGATCAA+AGG | 0.559065 | 5_4:-20707914 | Msa0843170:CDS |
| CATTGCAAACCTCCGTTCGT+CGG | 0.559198 | 5_4:+20709604 | None:intergenic |
| TCGTAGCCTGCACTCCAACT+GGG | 0.565145 | 5_4:-20707736 | Msa0843170:CDS |
| TGTATGTTATAGGTTGATGA+AGG | 0.572157 | 5_4:-20705438 | Msa0843170:intron |
| GATCTAATGTAGAACCCAGT+TGG | 0.573469 | 5_4:+20707722 | None:intergenic |
| TTGATGAAGGTACAAGACTC+AGG | 0.574689 | 5_4:-20705425 | Msa0843170:CDS |
| TCTATCATAGCAATATGTGC+TGG | 0.578974 | 5_4:-20706189 | Msa0843170:intron |
| TCGGAACTGGTTGGTGCGTG+AGG | 0.582859 | 5_4:+20707879 | None:intergenic |
| ATACTGTGAAGGAACAAGAA+AGG | 0.583431 | 5_4:-20707335 | Msa0843170:CDS |
| TGGCAGTTGCAAAACAGTCA+AGG | 0.585684 | 5_4:-20705350 | Msa0843170:CDS |
| CACTAGACATCGGAACTGGT+TGG | 0.596249 | 5_4:+20707870 | None:intergenic |
| ACAAATATGGATTCCAACAA+GGG | 0.598946 | 5_4:-20708099 | Msa0843170:CDS |
| ATAAAGTGGATGATGGAAAG+AGG | 0.602413 | 5_4:-20705554 | Msa0843170:CDS |
| GGCATGGAAGGCACAAACAC+AGG | 0.608508 | 5_4:-20706168 | Msa0843170:CDS |
| ACAGGAGCTAAAACAAAGGA+TGG | 0.609797 | 5_4:-20707948 | Msa0843170:intron |
| AATACCATAACAAGTTTATG+GGG | 0.611042 | 5_4:-20706133 | Msa0843170:CDS |
| GGAGTGCAGGCTACGACAAG+AGG | 0.620495 | 5_4:+20707743 | None:intergenic |
| GTATATGGAAGAGTTCCTCA+TGG | 0.622722 | 5_4:-20705767 | Msa0843170:CDS |
| GTGAACAGGAGCTAAAACAA+AGG | 0.629847 | 5_4:-20707952 | Msa0843170:intron |
| AATAAAACGCCGACGAACGG+AGG | 0.630467 | 5_4:-20709613 | Msa0843170:CDS |
| CGACGAACGGAGGTTTGCAA+TGG | 0.641886 | 5_4:-20709603 | Msa0843170:CDS |
| TCAGACATACCATACTGTGA+AGG | 0.650977 | 5_4:-20707346 | Msa0843170:CDS |
| AGTTGCAAAACAGTCAAGGA+GGG | 0.665111 | 5_4:-20705346 | Msa0843170:CDS |
| GTTTGTACCGAGAAAATGGT+CGG | 0.671213 | 5_4:+20706299 | None:intergenic |
| CAGTTGCAAAACAGTCAAGG+AGG | 0.684092 | 5_4:-20705347 | Msa0843170:CDS |
| TCAGCATTGACACTAGACAT+CGG | 0.708624 | 5_4:+20707860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTA+TGG | - | chr5_4:20707835-20707854 | Msa0843170:intron | 0.0% |
| !!! | TCATTTTATATTTTAAATTG+CGG | - | chr5_4:20706159-20706178 | Msa0843170:CDS | 10.0% |
| !!! | ATTATTATTATTTCTTTGAT+TGG | - | chr5_4:20706560-20706579 | Msa0843170:intron | 10.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | + | chr5_4:20708700-20708719 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | + | chr5_4:20709100-20709119 | None:intergenic | 10.0% |
| !! | ATAAGATAAATCAGTATATT+TGG | + | chr5_4:20705574-20705593 | None:intergenic | 15.0% |
| !! | GAAAATAAATATTTGAAGAT+TGG | - | chr5_4:20706878-20706897 | Msa0843170:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | - | chr5_4:20708309-20708328 | Msa0843170:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | + | chr5_4:20709135-20709154 | None:intergenic | 15.0% |
| !! | AAATATGATATGTATGTTAT+AGG | - | chr5_4:20709507-20709526 | Msa0843170:intron | 15.0% |
| !! | AAGTTCTTGTAATATAAGTT+GGG | + | chr5_4:20705644-20705663 | None:intergenic | 20.0% |
| !! | AAAGTTCTTGTAATATAAGT+TGG | + | chr5_4:20705645-20705664 | None:intergenic | 20.0% |
| !!! | ATATCTTTTTTGCTAGATTT+CGG | - | chr5_4:20705699-20705718 | Msa0843170:CDS | 20.0% |
| !! | ATATTACAAGAACTTTGTAA+TGG | - | chr5_4:20705754-20705773 | Msa0843170:CDS | 20.0% |
| !! | TGCTTATATATTATAAACTG+CGG | - | chr5_4:20705797-20705816 | Msa0843170:intron | 20.0% |
| !!! | ATAAACAGTAATTTAAGTTG+CGG | + | chr5_4:20706190-20706209 | None:intergenic | 20.0% |
| !! | ATGATCAAATATATATGAAC+TGG | + | chr5_4:20706414-20706433 | None:intergenic | 20.0% |
| !!! | TGGGTAAAAGTTTTTTTTTT+TGG | - | chr5_4:20706476-20706495 | Msa0843170:intron | 20.0% |
| !!! | TCTTTGATTGGTTTTTATTT+TGG | - | chr5_4:20706572-20706591 | Msa0843170:intron | 20.0% |
| !! | AGAAAAAAGAGCTAAAAAAT+AGG | + | chr5_4:20706712-20706731 | None:intergenic | 20.0% |
| !!! | AAATATTTATTTTCCCTTGT+TGG | + | chr5_4:20706872-20706891 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | + | chr5_4:20707718-20707737 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | - | chr5_4:20707883-20707902 | Msa0843170:CDS | 20.0% |
| !!! | TATTTTGAACATGCATATTA+TGG | - | chr5_4:20708172-20708191 | Msa0843170:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | + | chr5_4:20708212-20708231 | None:intergenic | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | - | chr5_4:20708820-20708839 | Msa0843170:intron | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | - | chr5_4:20708821-20708840 | Msa0843170:intron | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | + | chr5_4:20708919-20708938 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | + | chr5_4:20709128-20709147 | None:intergenic | 20.0% |
| !! | TAATCATGAAATTCAATGTT+AGG | - | chr5_4:20709357-20709376 | Msa0843170:intron | 20.0% |
| ! | TTGCGCAAGTTTAAATTTAA+CGG | + | chr5_4:20705599-20705618 | None:intergenic | 25.0% |
| ! | ATATTACAAGAACTTTGCAA+TGG | - | chr5_4:20705649-20705668 | Msa0843170:intron | 25.0% |
| ! | CTAGCAAAAAAGATATCTAA+TGG | + | chr5_4:20705695-20705714 | None:intergenic | 25.0% |
| ! | AAGTTCTTGTAATATAAGCT+GGG | + | chr5_4:20705749-20705768 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGTAATATAAGC+TGG | + | chr5_4:20705750-20705769 | None:intergenic | 25.0% |
| ! | AGGAAAATTGATCAAAGTTA+CGG | + | chr5_4:20705827-20705846 | None:intergenic | 25.0% |
| !! | TGTAAAAAAGTATACGCAAA+TGG | - | chr5_4:20706032-20706051 | Msa0843170:intron | 25.0% |
| ! | CATGATTTAAGAATTCTACA+GGG | + | chr5_4:20706229-20706248 | None:intergenic | 25.0% |
| ! | ACATGATTTAAGAATTCTAC+AGG | + | chr5_4:20706230-20706249 | None:intergenic | 25.0% |
| !! | ATTGATTTATCTATGTAGCA+TGG | - | chr5_4:20706456-20706475 | Msa0843170:intron | 25.0% |
| ! | TTGATTTATCTATGTAGCAT+GGG | - | chr5_4:20706457-20706476 | Msa0843170:intron | 25.0% |
| !!! | TTTTTTTTGGTTACATAGCA+TGG | - | chr5_4:20706489-20706508 | Msa0843170:intron | 25.0% |
| !!! | TTTTTTTGGTTACATAGCAT+GGG | - | chr5_4:20706490-20706509 | Msa0843170:intron | 25.0% |
| ! | AGTCAAAATTAACCAAACAA+AGG | + | chr5_4:20706660-20706679 | None:intergenic | 25.0% |
| ! | AACATTACAAAAAAATCACG+TGG | + | chr5_4:20706756-20706775 | None:intergenic | 25.0% |
| ! | ATTTGTAGTATCAACTCATA+CGG | - | chr5_4:20706929-20706948 | Msa0843170:intron | 25.0% |
| ! | TTACTTACACTAGGAATAAA+AGG | + | chr5_4:20707296-20707315 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTACTTACACT+AGG | + | chr5_4:20707305-20707324 | None:intergenic | 25.0% |
| ! | TTACCTTTATGTTACTCATT+TGG | - | chr5_4:20707317-20707336 | Msa0843170:CDS | 25.0% |
| ! | ATACCAAATGAGTAACATAA+AGG | + | chr5_4:20707323-20707342 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTTGCAGCAAAC+AGG | - | chr5_4:20707575-20707594 | Msa0843170:intron | 25.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | + | chr5_4:20707680-20707699 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | - | chr5_4:20707753-20707772 | Msa0843170:CDS | 25.0% |
| !!! | TGTTGCTTTGAAAACTAATA+AGG | - | chr5_4:20708294-20708313 | Msa0843170:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | + | chr5_4:20708369-20708388 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | + | chr5_4:20708427-20708446 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | - | chr5_4:20708424-20708443 | Msa0843170:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | - | chr5_4:20708442-20708461 | Msa0843170:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | - | chr5_4:20708822-20708841 | Msa0843170:intron | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | + | chr5_4:20708849-20708868 | None:intergenic | 25.0% |
| ! | AAATACAAAAGCAATTGAGA+AGG | + | chr5_4:20709462-20709481 | None:intergenic | 25.0% |
| !!! | TCCTTTTTTTTGTCTGAAGA+GGG | + | chr5_4:20705391-20705410 | None:intergenic | 30.0% |
| !!! | AAAAAAGGAGCAGTTTTTTC+AGG | - | chr5_4:20705402-20705421 | Msa0843170:CDS | 30.0% |
| !!! | AAAAAGGAGCAGTTTTTTCA+GGG | - | chr5_4:20705403-20705422 | Msa0843170:CDS | 30.0% |
| AAAAAAGATGAGTACCTATC+TGG | + | chr5_4:20705451-20705470 | None:intergenic | 30.0% | |
| AAAGTGCATTATCATATTGC+TGG | - | chr5_4:20705547-20705566 | Msa0843170:CDS | 30.0% | |
| TGGGAAATTGATCAAAGTAT+CGG | + | chr5_4:20705730-20705749 | None:intergenic | 30.0% | |
| TACAAGAACTTTGTAATGGT+TGG | - | chr5_4:20705758-20705777 | Msa0843170:CDS | 30.0% | |
| AAAATTGATCAAAGTTACGG+TGG | + | chr5_4:20705824-20705843 | None:intergenic | 30.0% | |
| ! | TCACACACGTATAAAGTTTT+AGG | + | chr5_4:20705847-20705866 | None:intergenic | 30.0% |
| ! | ATGTTTTCGATTGATCAACA+CGG | + | chr5_4:20705972-20705991 | None:intergenic | 30.0% |
| GTTGATCAATCGAAAACATT+AGG | - | chr5_4:20705973-20705992 | Msa0843170:intron | 30.0% | |
| AAAACATTAGGATCATTCTG+TGG | - | chr5_4:20705985-20706004 | Msa0843170:intron | 30.0% | |
| AATGTATCAGACAAGAATGA+TGG | - | chr5_4:20706264-20706283 | Msa0843170:intron | 30.0% | |
| !!! | ATGTGGCTATTTTTTTGGAA+AGG | + | chr5_4:20706634-20706653 | None:intergenic | 30.0% |
| ACAAATATGGATTCCAACAA+GGG | - | chr5_4:20706856-20706875 | Msa0843170:intron | 30.0% | |
| !! | AAATTTGCTAACATGTGAAC+AGG | - | chr5_4:20706989-20707008 | Msa0843170:intron | 30.0% |
| CCATCAGGTAAAAACAAAAA+CGG | - | chr5_4:20707182-20707201 | Msa0843170:intron | 30.0% | |
| ATAATTTACTGTGAGTGTCT+TGG | + | chr5_4:20707268-20707287 | None:intergenic | 30.0% | |
| ! | GATATGGCATCTTATTTGTT+TGG | - | chr5_4:20707456-20707475 | Msa0843170:intron | 30.0% |
| ACTGTCATCATGATTTAGTT+AGG | - | chr5_4:20708094-20708113 | Msa0843170:CDS | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | + | chr5_4:20708515-20708534 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | - | chr5_4:20708513-20708532 | Msa0843170:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | - | chr5_4:20708620-20708639 | Msa0843170:intron | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | - | chr5_4:20708627-20708646 | Msa0843170:intron | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | - | chr5_4:20708844-20708863 | Msa0843170:intron | 30.0% | |
| AATATCATTACACGACACAT+AGG | - | chr5_4:20708880-20708899 | Msa0843170:intron | 30.0% | |
| ATATCCCTAACAAACATTGT+TGG | - | chr5_4:20709154-20709173 | Msa0843170:intron | 30.0% | |
| ! | AAAGCCAACAATGTTTGTTA+GGG | + | chr5_4:20709161-20709180 | None:intergenic | 30.0% |
| TAAAGCCAACAATGTTTGTT+AGG | + | chr5_4:20709162-20709181 | None:intergenic | 30.0% | |
| !! | TAACAAACATTGTTGGCTTT+AGG | - | chr5_4:20709161-20709180 | Msa0843170:intron | 30.0% |
| ! | ACTCCTCTTTTTATATGACT+TGG | - | chr5_4:20709211-20709230 | Msa0843170:intron | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | + | chr5_4:20709217-20709236 | None:intergenic | 30.0% | |
| TTCAATGTTAGGAATGATTG+TGG | - | chr5_4:20709368-20709387 | Msa0843170:intron | 30.0% | |
| TTAGGAATGATTGTGGAATA+TGG | - | chr5_4:20709375-20709394 | Msa0843170:intron | 30.0% | |
| TAGGAATGATTGTGGAATAT+GGG | - | chr5_4:20709376-20709395 | Msa0843170:intron | 30.0% | |
| !! | TGTATGTTATAGGTTGATGA+AGG | - | chr5_4:20709517-20709536 | Msa0843170:intron | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | - | chr5_4:20709552-20709571 | Msa0843170:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | + | chr5_4:20709580-20709599 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | - | chr5_4:20709585-20709604 | Msa0843170:CDS | 30.0% | |
| ACCCTCTTCAGACAAAAAAA+AGG | - | chr5_4:20705387-20705406 | Msa0843170:CDS | 35.0% | |
| !!! | CTCCTTTTTTTTGTCTGAAG+AGG | + | chr5_4:20705392-20705411 | None:intergenic | 35.0% |
| ACATATCTGTCTGTTAGACA+TGG | - | chr5_4:20705866-20705885 | Msa0843170:intron | 35.0% | |
| !! | TGTTAGACATGGTTTTACGA+TGG | - | chr5_4:20705877-20705896 | Msa0843170:intron | 35.0% |
| !! | GTTAGACATGGTTTTACGAT+GGG | - | chr5_4:20705878-20705897 | Msa0843170:intron | 35.0% |
| !! | TTTACGATGGGTTATCATAG+AGG | - | chr5_4:20705890-20705909 | Msa0843170:intron | 35.0% |
| !! | TTACGATGGGTTATCATAGA+GGG | - | chr5_4:20705891-20705910 | Msa0843170:intron | 35.0% |
| ATCATACAATGCGTCTGAAA+AGG | - | chr5_4:20706095-20706114 | Msa0843170:intron | 35.0% | |
| TTGGAAAGGAATGTACATGT+GGG | + | chr5_4:20706620-20706639 | None:intergenic | 35.0% | |
| TTTGGAAAGGAATGTACATG+TGG | + | chr5_4:20706621-20706640 | None:intergenic | 35.0% | |
| !!! | GGTACATGTGGCTATTTTTT+TGG | + | chr5_4:20706639-20706658 | None:intergenic | 35.0% |
| ! | TAACCAAACAAAGGTACATG+TGG | + | chr5_4:20706651-20706670 | None:intergenic | 35.0% |
| CAGTGAAGAAGACACAAATA+TGG | - | chr5_4:20706843-20706862 | Msa0843170:intron | 35.0% | |
| CACAAATATGGATTCCAACA+AGG | - | chr5_4:20706855-20706874 | Msa0843170:intron | 35.0% | |
| ATTACCTCATGTTCACATGT+TGG | + | chr5_4:20706907-20706926 | None:intergenic | 35.0% | |
| AAAACAAAGGATGGCTAAGA+TGG | - | chr5_4:20707016-20707035 | Msa0843170:intron | 35.0% | |
| TTTCCTTGGAAGAGATCAAA+GGG | - | chr5_4:20707042-20707061 | Msa0843170:intron | 35.0% | |
| TGATAAGGAAGATGGCAATA+AGG | - | chr5_4:20707115-20707134 | Msa0843170:intron | 35.0% | |
| !!! | CCGTTTTTGTTTTTACCTGA+TGG | + | chr5_4:20707185-20707204 | None:intergenic | 35.0% |
| GACACTCACAGTAAATTATG+TGG | - | chr5_4:20707269-20707288 | Msa0843170:CDS | 35.0% | |
| TTCGGTATTTAAACCAGTGA+AGG | - | chr5_4:20707407-20707426 | Msa0843170:intron | 35.0% | |
| TGACTAACTCATCAGTTGAA+CGG | + | chr5_4:20707482-20707501 | None:intergenic | 35.0% | |
| TTTCTTGTTCCTTCACAGTA+TGG | + | chr5_4:20707621-20707640 | None:intergenic | 35.0% | |
| ATACTGTGAAGGAACAAGAA+AGG | - | chr5_4:20707620-20707639 | Msa0843170:intron | 35.0% | |
| TAGAAACTGAGACCATATAC+AGG | + | chr5_4:20707768-20707787 | None:intergenic | 35.0% | |
| TGACAATGACAGATGAAACA+AGG | - | chr5_4:20707868-20707887 | Msa0843170:intron | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | - | chr5_4:20707949-20707968 | Msa0843170:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | - | chr5_4:20708400-20708419 | Msa0843170:intron | 35.0% | |
| TCTATCATAGCAATATGTGC+TGG | - | chr5_4:20708766-20708785 | Msa0843170:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | - | chr5_4:20708960-20708979 | Msa0843170:intron | 35.0% | |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | - | chr5_4:20709173-20709192 | Msa0843170:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | + | chr5_4:20709206-20709225 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | + | chr5_4:20709249-20709268 | None:intergenic | 35.0% | |
| !! | ATAAAGTGGATGATGGAAAG+AGG | - | chr5_4:20709401-20709420 | Msa0843170:intron | 35.0% |
| !!! | TCGGCGTTTTATTTCAACCA+TGG | + | chr5_4:20705335-20705354 | None:intergenic | 40.0% |
| TGAAATAAAACGCCGACGAA+CGG | - | chr5_4:20705339-20705358 | Msa0843170:CDS | 40.0% | |
| !! | TTTTCAGGGAAGACCTTTTG+TGG | - | chr5_4:20705417-20705436 | Msa0843170:CDS | 40.0% |
| TCTGGTACCAAATCCACAAA+AGG | + | chr5_4:20705433-20705452 | None:intergenic | 40.0% | |
| ! | TTGTGGATTTGGTACCAGAT+AGG | - | chr5_4:20705434-20705453 | Msa0843170:intron | 40.0% |
| ATACGACATGCGCATACAAA+AGG | + | chr5_4:20705937-20705956 | None:intergenic | 40.0% | |
| TTGTATGCGCATGTCGTATT+TGG | - | chr5_4:20705938-20705957 | Msa0843170:intron | 40.0% | |
| ATGATCAAGCTCAACGACAT+AGG | + | chr5_4:20706080-20706099 | None:intergenic | 40.0% | |
| TAGCCACATGTACCTTTGTT+TGG | - | chr5_4:20706645-20706664 | Msa0843170:intron | 40.0% | |
| TCACGTGGTCAACAACTAAA+TGG | + | chr5_4:20706741-20706760 | None:intergenic | 40.0% | |
| GAATCCAACATGTGAACATG+AGG | - | chr5_4:20706900-20706919 | Msa0843170:intron | 40.0% | |
| GTGAACAGGAGCTAAAACAA+AGG | - | chr5_4:20707003-20707022 | Msa0843170:intron | 40.0% | |
| ACAGGAGCTAAAACAAAGGA+TGG | - | chr5_4:20707007-20707026 | Msa0843170:intron | 40.0% | |
| CTTTCCTTGGAAGAGATCAA+AGG | - | chr5_4:20707041-20707060 | Msa0843170:intron | 40.0% | |
| TATCCCTTTGATCTCTTCCA+AGG | + | chr5_4:20707048-20707067 | None:intergenic | 40.0% | |
| !! | TCAGCATTGACACTAGACAT+CGG | + | chr5_4:20707098-20707117 | None:intergenic | 40.0% |
| GTCTAGTGTCAATGCTGATA+AGG | - | chr5_4:20707100-20707119 | Msa0843170:intron | 40.0% | |
| GTCAATGCTGATAAGGAAGA+TGG | - | chr5_4:20707107-20707126 | Msa0843170:intron | 40.0% | |
| CGAAACATTTCCTTGTCAAC+GGG | + | chr5_4:20707149-20707168 | None:intergenic | 40.0% | |
| CCGAAACATTTCCTTGTCAA+CGG | + | chr5_4:20707150-20707169 | None:intergenic | 40.0% | |
| CCGTTGACAAGGAAATGTTT+CGG | - | chr5_4:20707147-20707166 | Msa0843170:intron | 40.0% | |
| !!! | CGGAAAGTGTTTTTACCATC+AGG | - | chr5_4:20707167-20707186 | Msa0843170:intron | 40.0% |
| GATCTAATGTAGAACCCAGT+TGG | + | chr5_4:20707236-20707255 | None:intergenic | 40.0% | |
| !!! | GTGAGTGTCTTGGCTTTTTT+GGG | + | chr5_4:20707258-20707277 | None:intergenic | 40.0% |
| !!! | TGTGAGTGTCTTGGCTTTTT+TGG | + | chr5_4:20707259-20707278 | None:intergenic | 40.0% |
| TATGCCATATGTTCATGCAG+TGG | - | chr5_4:20707379-20707398 | Msa0843170:intron | 40.0% | |
| TTCAAAGTCATTGCCTTCAC+TGG | + | chr5_4:20707423-20707442 | None:intergenic | 40.0% | |
| GAACTCTGACGAATGTGATA+TGG | - | chr5_4:20707440-20707459 | Msa0843170:intron | 40.0% | |
| TCAGACATACCATACTGTGA+AGG | - | chr5_4:20707609-20707628 | Msa0843170:intron | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | + | chr5_4:20707663-20707682 | None:intergenic | 40.0% | |
| GTCTGAATCATGAAACTCGT+TGG | - | chr5_4:20707938-20707957 | Msa0843170:CDS | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | - | chr5_4:20708649-20708668 | Msa0843170:intron | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | + | chr5_4:20708659-20708678 | None:intergenic | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | + | chr5_4:20708829-20708848 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | - | chr5_4:20709063-20709082 | Msa0843170:intron | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | - | chr5_4:20709188-20709207 | Msa0843170:intron | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | - | chr5_4:20709267-20709286 | Msa0843170:intron | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | - | chr5_4:20709387-20709406 | Msa0843170:intron | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | - | chr5_4:20709394-20709413 | Msa0843170:intron | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | - | chr5_4:20709530-20709549 | Msa0843170:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | - | chr5_4:20709540-20709559 | Msa0843170:CDS | 40.0% | |
| AGTTGCAAAACAGTCAAGGA+GGG | - | chr5_4:20709609-20709628 | Msa0843170:CDS | 40.0% | |
| ! | GGGAAGACCTTTTGTGGATT+TGG | - | chr5_4:20705423-20705442 | Msa0843170:CDS | 45.0% |
| TTGACACTAGACATCGGAAC+TGG | + | chr5_4:20707092-20707111 | None:intergenic | 45.0% | |
| ACAGCCACTGCATGAACATA+TGG | + | chr5_4:20707386-20707405 | None:intergenic | 45.0% | |
| GCGAGTTTGTACCGAGAAAA+TGG | + | chr5_4:20708663-20708682 | None:intergenic | 45.0% | |
| ! | CATAGCAATATGTGCTGGCA+TGG | - | chr5_4:20708771-20708790 | Msa0843170:intron | 45.0% |
| GAGCATTCAGAATCATGCAC+TGG | + | chr5_4:20708956-20708975 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | + | chr5_4:20708988-20709007 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | + | chr5_4:20709259-20709278 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | + | chr5_4:20709269-20709288 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | - | chr5_4:20709266-20709285 | Msa0843170:intron | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | - | chr5_4:20709275-20709294 | Msa0843170:intron | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | + | chr5_4:20709279-20709298 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAAACAGTCA+AGG | - | chr5_4:20709605-20709624 | Msa0843170:CDS | 45.0% | |
| CAGTTGCAAAACAGTCAAGG+AGG | - | chr5_4:20709608-20709627 | Msa0843170:CDS | 45.0% | |
| AATAAAACGCCGACGAACGG+AGG | - | chr5_4:20705342-20705361 | Msa0843170:CDS | 50.0% | |
| CATTGCAAACCTCCGTTCGT+CGG | + | chr5_4:20705354-20705373 | None:intergenic | 50.0% | |
| GACATGCGCATACAAAAGGC+TGG | + | chr5_4:20705933-20705952 | None:intergenic | 50.0% | |
| GGCTAAGATGGAGCTTTCCT+TGG | - | chr5_4:20707028-20707047 | Msa0843170:intron | 50.0% | |
| CACTAGACATCGGAACTGGT+TGG | + | chr5_4:20707088-20707107 | None:intergenic | 50.0% | |
| GTTCATGCAGTGGCTGTCTT+CGG | - | chr5_4:20707389-20707408 | Msa0843170:intron | 50.0% | |
| ! | GCAATATGTGCTGGCATGGA+AGG | - | chr5_4:20708775-20708794 | Msa0843170:intron | 50.0% |
| CGACGAACGGAGGTTTGCAA+TGG | - | chr5_4:20705352-20705371 | Msa0843170:CDS | 55.0% | |
| GGACTGTGAACCCGTTGACA+AGG | - | chr5_4:20707136-20707155 | Msa0843170:intron | 55.0% | |
| TCGTAGCCTGCACTCCAACT+GGG | - | chr5_4:20707219-20707238 | Msa0843170:CDS | 55.0% | |
| GTAGAACCCAGTTGGAGTGC+AGG | + | chr5_4:20707228-20707247 | None:intergenic | 55.0% | |
| ! | GGCATGGAAGGCACAAACAC+AGG | - | chr5_4:20708787-20708806 | Msa0843170:intron | 55.0% |
| ! | TCAGCACGGGCTGAATGACT+TGG | + | chr5_4:20709040-20709059 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | + | chr5_4:20709054-20709073 | None:intergenic | 55.0% | |
| ! | TCGGAACTGGTTGGTGCGTG+AGG | + | chr5_4:20707079-20707098 | None:intergenic | 60.0% |
| GGAGTGCAGGCTACGACAAG+AGG | + | chr5_4:20707215-20707234 | None:intergenic | 60.0% | |
| GTCGTAGCCTGCACTCCAAC+TGG | - | chr5_4:20707218-20707237 | Msa0843170:CDS | 60.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | - | chr5_4:20709041-20709060 | Msa0843170:intron | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | + | chr5_4:20709053-20709072 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 20705332 | 20709645 | 20705332 | ID=Msa0843170;Name=Msa0843170 |
| chr5_4 | mRNA | 20705332 | 20709645 | 20705332 | ID=Msa0843170-mRNA-1;Parent=Msa0843170;Name=Msa0843170-mRNA-1;_AED=0.19;_eAED=0.27;_QI=2|0|0|1|0.33|0.3|10|0|364 |
| chr5_4 | exon | 20709522 | 20709645 | 20709522 | ID=Msa0843170-mRNA-1:exon:8629;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20708067 | 20708163 | 20708067 | ID=Msa0843170-mRNA-1:exon:8628;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20707873 | 20707966 | 20707873 | ID=Msa0843170-mRNA-1:exon:8627;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20707670 | 20707788 | 20707670 | ID=Msa0843170-mRNA-1:exon:8626;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20707210 | 20707380 | 20707210 | ID=Msa0843170-mRNA-1:exon:8625;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20706307 | 20706396 | 20706307 | ID=Msa0843170-mRNA-1:exon:8624;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20706112 | 20706201 | 20706112 | ID=Msa0843170-mRNA-1:exon:8623;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20705670 | 20705794 | 20705670 | ID=Msa0843170-mRNA-1:exon:8622;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20705532 | 20705598 | 20705532 | ID=Msa0843170-mRNA-1:exon:8621;Parent=Msa0843170-mRNA-1 |
| chr5_4 | exon | 20705332 | 20705448 | 20705332 | ID=Msa0843170-mRNA-1:exon:8620;Parent=Msa0843170-mRNA-1 |
| chr5_4 | five_prime_UTR | 20709644 | 20709645 | 20709644 | ID=Msa0843170-mRNA-1:five_prime_utr;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20709522 | 20709643 | 20709522 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20708067 | 20708163 | 20708067 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20707873 | 20707966 | 20707873 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20707670 | 20707788 | 20707670 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20707210 | 20707380 | 20707210 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20706307 | 20706396 | 20706307 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20706112 | 20706201 | 20706112 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20705670 | 20705794 | 20705670 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20705532 | 20705598 | 20705532 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| chr5_4 | CDS | 20705332 | 20705448 | 20705332 | ID=Msa0843170-mRNA-1:cds;Parent=Msa0843170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
